Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AGL	0	genome.wustl.edu	37	1	100379236	100379236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	100379236	100379236	C	T	SNP	AGL	ENST00000294724	human	ensembl	74_37	+1	known	missense	c.4103	p.A1368V	1.000	pfam_AGL/Gdb1,superfamily_6-hairpin_glycosidase-like,tigrfam_Glycogen_debranch_met	pfam_AGL/Gdb1,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688				135	0	0	83	49	37.1212
S1PR1	0	genome.wustl.edu	37	1	101704655	101704655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	101704655	101704655	G	A	SNP	S1PR1	ENST00000305352	human	ensembl	74_37	+1	known	missense	c.115	p.A39T	0.006	prints_EDG1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_EDG1_rcpt,prints_S1P_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	S1PR1	HGNC	ENSG00000170989				117	0	0	70	26	27.0833
COL11A1	0	genome.wustl.edu	37	1	103491362	103491362	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	103491362	103491362	C	A	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	silent	c.927	p.G309	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				68	0	0	72	4	5.26316
CASZ1	0	genome.wustl.edu	37	1	10714074	10714074	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	10714074	10714074	G	T	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	silent	c.2040	p.T680	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				33	0	0	25	8	24.2424
VAV3	0	genome.wustl.edu	37	1	108417568	108417568	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	108417568	108417568	T	G	SNP	VAV3	ENST00000370056	human	ensembl	74_37	-1	known	missense	c.276	p.E92D	0.998	pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,prints_SM22_calponin	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215				47	0	0	57	8	12.3077
AKNAD1	0	genome.wustl.edu	37	1	109359778	109359778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	109359778	109359778	C	T	SNP	AKNAD1	ENST00000370001	human	ensembl	74_37	-1	known	missense	c.2271	p.M757I	0.000	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641				32	0	0	19	12	38.7097
AHCYL1	0	genome.wustl.edu	37	1	110561031	110561031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	110561031	110561031	G	A	SNP	AHCYL1	ENST00000369799	human	ensembl	74_37	+1	known	missense	c.1160	p.R387H	1.000	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL1	HGNC	ENSG00000168710				47	0	0	40	17	29.8246
STRIP1	0	genome.wustl.edu	37	1	110581321	110581321	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	110581321	110581321	G	A	SNP	STRIP1	ENST00000369795	human	ensembl	74_37	+1	known	silent	c.267	p.T89	0.007	pfam_N1221	pfam_DUF3402,pfam_N1221	-	no_errors	STRIP1	HGNC	ENSG00000143093				57	0	0	74	7	8.64198
KCNC4	0	genome.wustl.edu	37	1	110754251	110754251	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	110754251	110754251	G	A	SNP	KCNC4	ENST00000369787	human	ensembl	74_37	+1	known	missense	c.130	p.G44S	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_K_chnl_volt-dep_Kv3_ID,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.4,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC4	HGNC	ENSG00000116396				54	0	0	54	5	8.47458
DENND2D	0	genome.wustl.edu	37	1	111734909	111734909	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	111734909	111734909	G	A	SNP	DENND2D	ENST00000357640	human	ensembl	74_37	-1	known	silent	c.825	p.A275	0.065	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2D	HGNC	ENSG00000162777				34	0	0	31	10	24.3902
ATP5F1	0	genome.wustl.edu	37	1	112002112	112002112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	112002112	112002112	C	T	SNP	ATP5F1	ENST00000369722	human	ensembl	74_37	+1	known	missense	c.547	p.R183W	1.000	pfam_ATPase_B_chain/sub_B/MI25	pfam_ATPase_B_chain/sub_B/MI25	-	no_errors	ATP5F1	HGNC	ENSG00000116459				68	0	0	79	6	7.05882
SLC16A1	0	genome.wustl.edu	37	1	113460046	113460046	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	113460046	113460046	G	A	SNP	SLC16A1	ENST00000369626	human	ensembl	74_37	-1	known	nonsense	c.982	p.R328*	0.988	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A1	HGNC	ENSG00000155380				30	0	0	19	11	36.6667
MAGI3	0	genome.wustl.edu	37	1	114196613	114196613	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	114196613	114196613	A	G	SNP	MAGI3	ENST00000369611	human	ensembl	74_37	+1	known	missense	c.2602	p.T868A	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI3	HGNC	ENSG00000081026				189	0	0	198	13	6.16114
PTPN22	0	genome.wustl.edu	37	1	114380697	114380697	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	114380697	114380697	A	G	SNP	PTPN22	ENST00000359785	human	ensembl	74_37	-1	known	missense	c.1325	p.V442A	0.001	pirsf_Non-rcpt_Tyr_Pase_8/22	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242				67	0	0	72	10	12.1951
AP4B1	0	genome.wustl.edu	37	1	114438057	114438057	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	114438057	114438057	G	T	SNP	AP4B1	ENST00000256658	human	ensembl	74_37	-1	known	missense	c.1850	p.A617D	0.311	pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP4B1	HGNC	ENSG00000134262				87	0	0	71	28	28.2828
CSDE1	0	genome.wustl.edu	37	1	115260698	115260698	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	115260698	115260698	C	T	SNP	CSDE1	ENST00000483407	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CSDE1	HGNC	ENSG00000009307				29	0	0	18	8	30.7692
PTGFRN	0	genome.wustl.edu	37	1	117487474	117487474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	117487474	117487474	G	A	SNP	PTGFRN	ENST00000393203	human	ensembl	74_37	+1	known	missense	c.592	p.A198T	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PTGFRN	HGNC	ENSG00000134247				13	0	0	11	5	31.25
CD101	0	genome.wustl.edu	37	1	117552499	117552499	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	117552499	117552499	T	C	SNP	CD101	ENST00000256652	human	ensembl	74_37	+1	known	missense	c.71	p.V24A	0.999	pfam_Ig_V-set	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD101	HGNC	ENSG00000134256				101	0	0	112	8	6.66667
MTHFR	0	genome.wustl.edu	37	1	11852364	11852364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	11852364	11852364	G	A	SNP	MTHFR	ENST00000376583	human	ensembl	74_37	-1	known	missense	c.1726	p.R576W	0.998	NULL	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000				146	0	0	109	42	27.8146
CLCN6	0	genome.wustl.edu	37	1	11898430	11898430	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	11898430	11898430	C	T	SNP	CLCN6	ENST00000346436	human	ensembl	74_37	+1	known	silent	c.2334	p.A778	0.970	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021				101	0	0	65	7	9.72222
ZNF697	0	genome.wustl.edu	37	1	120165879	120165879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	120165879	120165879	C	T	SNP	ZNF697	ENST00000421812	human	ensembl	74_37	-1	known	missense	c.1087	p.V363M	0.991	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF697	HGNC	ENSG00000143067				11	0	0	2	3	60
MFN2	0	genome.wustl.edu	37	1	12052705	12052705	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	12052705	12052705	A	G	SNP	MFN2	ENST00000235329	human	ensembl	74_37	+1	known	missense	c.269	p.E90G	1.000	superfamily_P-loop_NTPase	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN2	HGNC	ENSG00000116688				284	0	0	197	48	19.5918
PRAMEF2	0	genome.wustl.edu	37	1	12921156	12921156	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	12921156	12921156	T	A	SNP	PRAMEF2	ENST00000240189	human	ensembl	74_37	+1	known	missense	c.947	p.F316Y	0.006	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952				207	0	0	143	38	20.9945
BCL9	0	genome.wustl.edu	37	1	147091769	147091769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	147091769	147091769	G	A	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	missense	c.1808	p.R603Q	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				104	0	0	65	18	21.6867
GABPB2	0	genome.wustl.edu	37	1	151063025	151063025	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	151063025	151063025	G	A	SNP	GABPB2	ENST00000368918	human	ensembl	74_37	+1	known	silent	c.252	p.A84	0.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	GABPB2	HGNC	ENSG00000143458				131	1	0.757576	93	29	23.7705
RFX5	0	genome.wustl.edu	37	1	151316207	151316207	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	151316207	151316207	A	G	SNP	RFX5	ENST00000290524	human	ensembl	74_37	-1	known	missense	c.707	p.I236T	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX5	HGNC	ENSG00000143390				69	0	0	49	4	7.54717
TUFT1	0	genome.wustl.edu	37	1	151546762	151546762	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	151546762	151546762	A	G	SNP	TUFT1	ENST00000538902	human	ensembl	74_37	+1	known	missense	c.668	p.Y223C	0.997	NULL	superfamily_Prefoldin	-	no_errors	TUFT1	HGNC	ENSG00000143367				81	0	0	62	10	13.8889
LINGO4	0	genome.wustl.edu	37	1	151774279	151774279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	151774279	151774279	C	T	SNP	LINGO4	ENST00000368820	human	ensembl	74_37	-1	known	missense	c.902	p.R301Q	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO4	HGNC	ENSG00000213171				59	0	0	42	22	34.375
FLG	0	genome.wustl.edu	37	1	152282031	152282031	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	152282031	152282031	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.5331	p.S1777	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				259	1	0.384615	202	81	28.6219
CRCT1	0	genome.wustl.edu	37	1	152487940	152487940	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	152487940	152487940	G	A	SNP	CRCT1	ENST00000368790	human	ensembl	74_37	+1	known	silent	c.81	p.P27	0.000	NULL	NULL	-	no_errors	CRCT1	HGNC	ENSG00000169509				8	0	0	15	6	28.5714
SMCP	0	genome.wustl.edu	37	1	152857092	152857092	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	152857092	152857092	G	A	SNP	SMCP	ENST00000368765	human	ensembl	74_37	+1	known	missense	c.194	p.C65Y	0.130	NULL	NULL	-	no_errors	SMCP	HGNC	ENSG00000163206				220	0	0	166	25	13.089
PGLYRP3	0	genome.wustl.edu	37	1	153279700	153279700	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	153279700	153279700	C	T	SNP	PGLYRP3	ENST00000290722	human	ensembl	74_37	-1	known	silent	c.99	p.P33	0.000	superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP3	HGNC	ENSG00000159527				13	0	0	13	4	23.5294
AQP10	0	genome.wustl.edu	37	1	154296779	154296779	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	154296779	154296779	G	T	SNP	AQP10	ENST00000324978	human	ensembl	74_37	+1	known	missense	c.729	p.W243C	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_10,prints_Aquaporin_3,tigrfam_MIP	-	no_errors	AQP10	HGNC	ENSG00000143595				24	0	0	30	3	9.09091
GBA	0	genome.wustl.edu	37	1	155207185	155207185	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	155207185	155207185	G	A	SNP	GBA	ENST00000327247	human	ensembl	74_37	-1	known	missense	c.946	p.R316C	0.012	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_30	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_30	-	no_errors	GBA	HGNC	ENSG00000177628				92	0	0	68	11	13.9241
ASH1L	0	genome.wustl.edu	37	1	155327459	155327459	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	155327459	155327459	T	C	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.6892	p.K2298E	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				99	0	0	119	14	10.5263
DAP3	0	genome.wustl.edu	37	1	155691377	155691377	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	155691377	155691377	C	T	SNP	DAP3	ENST00000343043	human	ensembl	74_37	+1	known	missense	c.238	p.P80S	1.000	superfamily_P-loop_NTPase	pfam_Ribosomal_S23/S29_mit,superfamily_P-loop_NTPase,prints_Ribosomal_S29_mit	-	no_errors	DAP3	HGNC	ENSG00000132676				129	0	0	66	32	32.6531
RXFP4	0	genome.wustl.edu	37	1	155912164	155912164	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	155912164	155912164	A	G	SNP	RXFP4	ENST00000368318	human	ensembl	74_37	+1	known	missense	c.664	p.T222A	0.991	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	RXFP4	HGNC	ENSG00000173080				49	0	0	52	9	14.7541
SLC25A44	0	genome.wustl.edu	37	1	156170176	156170176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	156170176	156170176	C	T	SNP	SLC25A44	ENST00000359511	human	ensembl	74_37	+1	known	missense	c.538	p.R180C	0.790	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A44	HGNC	ENSG00000160785				120	0	0	77	36	31.8584
NTRK1	0	genome.wustl.edu	37	1	156837916	156837916	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	156837916	156837916	T	C	SNP	NTRK1	ENST00000524377	human	ensembl	74_37	+1	known	missense	c.449	p.L150P	0.517	smart_Cys-rich_flank_reg_C	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400				92	0	0	81	8	8.98876
KIRREL	0	genome.wustl.edu	37	1	158064555	158064555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	158064555	158064555	G	A	SNP	KIRREL	ENST00000368173	human	ensembl	74_37	+1	known	missense	c.1967	p.R656H	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL	HGNC	ENSG00000183853				56	0	0	37	17	31.4815
OR10X1	0	genome.wustl.edu	37	1	158549198	158549198	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	158549198	158549198	A	G	SNP	OR10X1	ENST00000368150	human	ensembl	74_37	-1	known	silent	c.492	p.A164	0.985	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10X1	HGNC	ENSG00000186400				31	0	0	18	8	30.7692
IFI16	0	genome.wustl.edu	37	1	158986435	158986435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	158986435	158986435	G	A	SNP	IFI16	ENST00000295809	human	ensembl	74_37	+1	known	missense	c.494	p.R165H	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565				98	0	0	73	22	23.1579
VANGL2	0	genome.wustl.edu	37	1	160385688	160385688	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	160385688	160385688	C	T	SNP	VANGL2	ENST00000368061	human	ensembl	74_37	+1	known	missense	c.61	p.R21C	1.000	pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738				44	0	0	20	12	37.5
PVRL4	0	genome.wustl.edu	37	1	161049561	161049561	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	161049561	161049561	G	A	SNP	PVRL4	ENST00000368012	human	ensembl	74_37	-1	known	silent	c.258	p.Y86	0.991	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PVRL4	HGNC	ENSG00000143217				70	0	0	40	19	32.2034
FCGR2A	0	genome.wustl.edu	37	1	161476213	161476213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	161476213	161476213	C	T	SNP	FCGR2A	ENST00000271450	human	ensembl	74_37	+1	known	missense	c.196	p.R66C	0.002	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCGR2A	HGNC	ENSG00000143226				71	0	0	48	14	22.5806
ARHGEF19	0	genome.wustl.edu	37	1	16525022	16525022	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	16525022	16525022	C	T	SNP	ARHGEF19	ENST00000478117	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARHGEF19	HGNC	ENSG00000142632				38	0	0	39	3	7.14286
RCSD1	0	genome.wustl.edu	37	1	167659290	167659290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	167659290	167659290	C	T	SNP	RCSD1	ENST00000367854	human	ensembl	74_37	+1	known	missense	c.203	p.S68L	0.908	NULL	pfam_RCSD	-	no_errors	RCSD1	HGNC	ENSG00000198771				112	0	0	100	6	5.66038
CCDC181	0	genome.wustl.edu	37	1	169394074	169394074	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	169394074	169394074	T	C	SNP	CCDC181	ENST00000367806	human	ensembl	74_37	-1	known	missense	c.92	p.E31G	0.998	NULL	NULL	-	no_errors	CCDC181	HGNC	ENSG00000117477				65	0	0	45	23	33.8235
MROH9	0	genome.wustl.edu	37	1	170967338	170967338	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	170967338	170967338	A	C	SNP	MROH9	ENST00000367759	human	ensembl	74_37	+1	known	missense	c.1519	p.S507R	0.031	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH9	HGNC	ENSG00000117501				60	0	0	83	11	11.7021
DNM3	0	genome.wustl.edu	37	1	171956852	171956852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	171956852	171956852	C	T	SNP	DNM3	ENST00000358155	human	ensembl	74_37	+1	known	missense	c.292	p.R98C	1.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM3	HGNC	ENSG00000197959				157	0	0	118	41	25.7862
ATP13A2	0	genome.wustl.edu	37	1	17318354	17318354	+	Splice_Site	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	17318354	17318354	C	A	SNP	ATP13A2	ENST00000326735	human	ensembl	74_37	-1	known	splice_site	c.2127-1	e20-1	1.000	-	-	-	no_errors	ATP13A2	HGNC	ENSG00000159363				72	0	0	61	9	12.8571
GAS5	0	genome.wustl.edu	37	1	173836814	173836814	+	RNA	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	173836814	173836814	A	G	SNP	GAS5	ENST00000364084	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.599	-	-	-	no_errors	GAS5	HGNC	ENSG00000234741				94	0	0	56	8	12.5
SERPINC1	0	genome.wustl.edu	37	1	173878804	173878804	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	173878804	173878804	T	C	SNP	SERPINC1	ENST00000367698	human	ensembl	74_37	-1	known	missense	c.1039	p.M347V	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINC1	HGNC	ENSG00000117601				188	1	0.529101	169	20	10.582
QSOX1	0	genome.wustl.edu	37	1	180155277	180155277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	180155277	180155277	G	A	SNP	QSOX1	ENST00000367602	human	ensembl	74_37	+1	known	missense	c.977	p.R326H	1.000	NULL	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260				45	0	0	40	7	14.8936
SHCBP1L	0	genome.wustl.edu	37	1	182921962	182921962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	182921962	182921962	C	T	SNP	SHCBP1L	ENST00000367547	human	ensembl	74_37	-1	known	missense	c.307	p.A103T	0.966	NULL	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	-	no_errors	SHCBP1L	HGNC	ENSG00000157060				35	0	0	20	14	41.1765
LAMC2	0	genome.wustl.edu	37	1	183197579	183197579	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	183197579	183197579	T	C	SNP	LAMC2	ENST00000264144	human	ensembl	74_37	+1	known	silent	c.1539	p.P513	0.997	smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085				61	0	0	53	5	8.62069
KCNT2	0	genome.wustl.edu	37	1	196197341	196197341	+	RNA	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	196197341	196197341	C	A	SNP	KCNT2	ENST00000498426	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.209	-	-	-	no_errors	KCNT2	HGNC	ENSG00000162687				14	0	0	21	5	19.2308
KCNT2	0	genome.wustl.edu	37	1	196288662	196288662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	196288662	196288662	G	A	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	missense	c.2300	p.A767V	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				57	0	0	84	5	5.61798
DENND1B	0	genome.wustl.edu	37	1	197704823	197704823	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	197704823	197704823	C	T	SNP	DENND1B	ENST00000477581	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DENND1B	HGNC	ENSG00000213047				23	0	0	18	15	45.4545
CAMSAP2	0	genome.wustl.edu	37	1	200818250	200818250	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	200818250	200818250	A	G	SNP	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	missense	c.2386	p.T796A	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				69	0	0	80	5	5.88235
KIF21B	0	genome.wustl.edu	37	1	200968582	200968582	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	200968582	200968582	G	A	SNP	KIF21B	ENST00000422435	human	ensembl	74_37	-1	known	nonsense	c.1780	p.R594*	0.499	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852				104	0	0	74	5	6.32911
C4BPA	0	genome.wustl.edu	37	1	207300065	207300065	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	207300065	207300065	C	A	SNP	C4BPA	ENST00000367070	human	ensembl	74_37	+1	known	silent	c.714	p.T238	0.032	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPA	HGNC	ENSG00000123838				60	0	0	61	22	26.506
CR1	0	genome.wustl.edu	37	1	207758095	207758095	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	207758095	207758095	C	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	missense	c.5404	p.P1802S	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				176	0	0	148	21	12.426
LAMB3	0	genome.wustl.edu	37	1	209804065	209804065	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	209804065	209804065	C	T	SNP	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	missense	c.838	p.V280I	0.984	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878				56	0	0	28	9	24.3243
CENPF	0	genome.wustl.edu	37	1	214795454	214795454	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	214795454	214795454	C	T	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.898	p.R300C	0.222	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				40	0	0	19	7	26.9231
ECE1	0	genome.wustl.edu	37	1	21563339	21563339	+	Splice_Site	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	21563339	21563339	T	G	SNP	ECE1	ENST00000374893	human	ensembl	74_37	-1	known	splice_site	c.1390-2	e12-2	1.000	-	-	-	no_errors	ECE1	HGNC	ENSG00000117298				106	0	0	115	11	8.73016
USH2A	0	genome.wustl.edu	37	1	215956157	215956157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	215956157	215956157	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.10508	p.S3503N	0.064	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				65	0	0	81	7	7.95455
EPRS	0	genome.wustl.edu	37	1	220152906	220152906	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	220152906	220152906	C	T	SNP	EPRS	ENST00000366923	human	ensembl	74_37	-1	known	missense	c.3763	p.V1255I	0.018	pfscan_aa-tRNA-synth_II,tigrfam_Pro-tRNA-ligase_IIa_arc-type	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_ligase_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_ligase_II_C,prints_Glu/Gln-tRNA-synth,prints_Pro-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-ligase_IIa_arc-type,tigrfam_Glu-tRNA-synth_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628				77	0	0	62	5	7.46269
DUSP10	0	genome.wustl.edu	37	1	221875832	221875832	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	221875832	221875832	C	T	SNP	DUSP10	ENST00000366899	human	ensembl	74_37	-1	known	silent	c.1371	p.E457	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507				169	0	0	164	10	5.74713
DUSP10	0	genome.wustl.edu	37	1	221912540	221912540	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	221912540	221912540	A	G	SNP	DUSP10	ENST00000366899	human	ensembl	74_37	-1	known	missense	c.547	p.Y183H	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507				112	0	0	71	30	29.703
HHIPL2	0	genome.wustl.edu	37	1	222696078	222696078	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	222696078	222696078	T	C	SNP	HHIPL2	ENST00000343410	human	ensembl	74_37	-1	known	silent	c.2040	p.R680	0.000	NULL	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512				252	0	0	241	21	8.01527
MIA3	0	genome.wustl.edu	37	1	222801804	222801804	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	222801804	222801804	T	A	SNP	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	missense	c.1242	p.D414E	0.738	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305				66	0	0	72	9	11.1111
DISP1	0	genome.wustl.edu	37	1	223177005	223177005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	223177005	223177005	C	T	SNP	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	missense	c.2266	p.R756W	0.993	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				63	0	0	60	20	25
MIXL1	0	genome.wustl.edu	37	1	226413384	226413384	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	226413384	226413384	T	C	SNP	MIXL1	ENST00000366810	human	ensembl	74_37	+1	known	silent	c.570	p.V190	0.245	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MIXL1	HGNC	ENSG00000185155				87	0	0	70	5	6.66667
ITPKB	0	genome.wustl.edu	37	1	226923596	226923596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	226923596	226923596	G	A	SNP	ITPKB	ENST00000272117	human	ensembl	74_37	-1	known	missense	c.1564	p.R522C	0.000	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772				51	0	0	31	2	6.06061
ITPKB	0	genome.wustl.edu	37	1	226924682	226924682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	226924682	226924682	C	T	SNP	ITPKB	ENST00000272117	human	ensembl	74_37	-1	known	missense	c.478	p.A160T	0.927	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772				142	0	0	107	14	11.5702
SNAP47	0	genome.wustl.edu	37	1	227954678	227954678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	227954678	227954678	G	A	SNP	SNAP47	ENST00000366759	human	ensembl	74_37	+1	known	missense	c.1142	p.R381H	0.000	NULL	pfscan_T_SNARE_dom	-	no_errors	SNAP47	HGNC	ENSG00000143740				56	0	0	44	12	21.4286
OBSCN	0	genome.wustl.edu	37	1	228437865	228437865	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	228437865	228437865	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.4233	p.Q1411H	0.994	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				123	0	0	108	11	9.2437
OBSCN	0	genome.wustl.edu	37	1	228495858	228495858	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	228495858	228495858	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.12513	p.T4171	0.002	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				90	0	0	57	16	21.9178
EPHA8	0	genome.wustl.edu	37	1	22902838	22902838	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	22902838	22902838	C	T	SNP	EPHA8	ENST00000166244	human	ensembl	74_37	+1	known	silent	c.288	p.R96	0.721	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886				69	0	0	48	23	32.3944
SIPA1L2	0	genome.wustl.edu	37	1	232581355	232581355	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	232581355	232581355	C	T	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	silent	c.3273	p.P1091	0.983	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				52	0	0	46	14	23.3333
TARBP1	0	genome.wustl.edu	37	1	234553890	234553890	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	234553890	234553890	A	G	SNP	TARBP1	ENST00000040877	human	ensembl	74_37	-1	novel	silent	c.3645	p.I1215	1.000	superfamily_ARM-type_fold	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588				17	0	0	34	3	8.10811
HNRNPR	0	genome.wustl.edu	37	1	23645142	23645142	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	23645142	23645142	T	C	SNP	HNRNPR	ENST00000374616	human	ensembl	74_37	-1	known	missense	c.860	p.D287G	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944				38	0	0	36	7	16.2791
EDARADD	0	genome.wustl.edu	37	1	236557807	236557807	+	Splice_Site	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	236557807	236557807	T	C	SNP	EDARADD	ENST00000334232	human	ensembl	74_37	+1	known	splice_site	c.61+2	e1+2	0.334	-	-	-	no_errors	EDARADD	HGNC	ENSG00000186197				88	0	0	82	7	7.86517
EDARADD	0	genome.wustl.edu	37	1	236590728	236590728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	236590728	236590728	G	A	SNP	EDARADD	ENST00000334232	human	ensembl	74_37	+1	known	missense	c.197	p.R66Q	0.036	NULL	pfam_Death_domain,superfamily_DEATH-like_dom	-	no_errors	EDARADD	HGNC	ENSG00000186197				42	0	0	37	16	30.1887
EDARADD	0	genome.wustl.edu	37	1	236645911	236645911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	236645911	236645911	C	T	SNP	EDARADD	ENST00000334232	human	ensembl	74_37	+1	known	missense	c.610	p.P204S	1.000	NULL	pfam_Death_domain,superfamily_DEATH-like_dom	-	no_errors	EDARADD	HGNC	ENSG00000186197				111	0	0	113	10	8.13008
MTR	0	genome.wustl.edu	37	1	237024537	237024537	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	237024537	237024537	T	C	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	missense	c.2156	p.V719A	1.000	pfam_Cbl-bd_cap,superfamily_Cbl-bd_cap,pirsf_MetH,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				92	0	0	103	14	11.9658
RYR2	0	genome.wustl.edu	37	1	237778123	237778123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	237778123	237778123	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.5689	p.P1897S	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				24	0	0	21	9	30
CHRM3	0	genome.wustl.edu	37	1	240072331	240072331	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	240072331	240072331	A	C	SNP	CHRM3	ENST00000255380	human	ensembl	74_37	+1	known	missense	c.1580	p.N527T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M3_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019				93	0	0	79	8	9.1954
FMN2	0	genome.wustl.edu	37	1	240370282	240370282	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	240370282	240370282	G	A	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.2170	p.E724K	0.955	NULL	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				61	0	0	32	10	23.8095
EXO1	0	genome.wustl.edu	37	1	242035457	242035457	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	242035457	242035457	T	C	SNP	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	missense	c.1391	p.V464A	0.000	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	EXO1	HGNC	ENSG00000174371				51	0	0	43	3	6.52174
PLCH2	0	genome.wustl.edu	37	1	2430597	2430597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	2430597	2430597	G	A	SNP	PLCH2	ENST00000378486	human	ensembl	74_37	+1	known	missense	c.2509	p.V837I	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH2	HGNC	ENSG00000149527				29	0	0	30	3	9.09091
ZBTB18	0	genome.wustl.edu	37	1	244217371	244217371	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	244217371	244217371	A	G	SNP	ZBTB18	ENST00000358704	human	ensembl	74_37	+1	known	missense	c.295	p.K99E	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB18	HGNC	ENSG00000179456				55	0	0	37	5	11.9048
ZBTB18	0	genome.wustl.edu	37	1	244218475	244218475	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	244218475	244218475	G	A	SNP	ZBTB18	ENST00000358704	human	ensembl	74_37	+1	known	missense	c.1399	p.V467M	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB18	HGNC	ENSG00000179456				58	0	0	40	8	16.6667
ZNF124	0	genome.wustl.edu	37	1	247320205	247320205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	247320205	247320205	C	T	SNP	ZNF124	ENST00000543802	human	ensembl	74_37	-1	known	missense	c.719	p.G240D	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF124	HGNC	ENSG00000196418				98	0	0	95	10	9.52381
NLRP3	0	genome.wustl.edu	37	1	247587740	247587740	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	247587740	247587740	T	C	SNP	NLRP3	ENST00000336119	human	ensembl	74_37	+1	known	missense	c.995	p.L332P	0.998	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711				65	0	0	50	19	27.5362
OR11L1	0	genome.wustl.edu	37	1	248005009	248005009	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	248005009	248005009	G	A	SNP	OR11L1	ENST00000355784	human	ensembl	74_37	-1	known	nonsense	c.190	p.Q64*	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11L1	HGNC	ENSG00000197591				34	0	0	37	3	7.5
OR2L5	0	genome.wustl.edu	37	1	248185891	248185891	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	248185891	248185891	G	A	SNP	OR2L5	ENST00000355281	human	ensembl	74_37	+1	known	silent	c.642	p.A214	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L5	HGNC	ENSG00000197454				77	0	0	75	12	13.7931
OR2L3	0	genome.wustl.edu	37	1	248223987	248223987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	248223987	248223987	G	A	SNP	OR2L3	ENST00000359959	human	ensembl	74_37	+1	known	missense	c.4	p.E2K	0.208	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128				196	0	0	185	22	10.628
OR2M5	0	genome.wustl.edu	37	1	248308959	248308959	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	248308959	248308959	G	A	SNP	OR2M5	ENST00000366476	human	ensembl	74_37	+1	known	silent	c.510	p.G170	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727				257	0	0	283	24	7.81759
DHDDS	0	genome.wustl.edu	37	1	26759476	26759476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	26759476	26759476	C	T	SNP	DHDDS	ENST00000360009	human	ensembl	74_37	+1	known	missense	c.40	p.R14W	1.000	NULL	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	-	no_errors	DHDDS	HGNC	ENSG00000117682				114	0	0	71	28	28.2828
RPS6KA1	0	genome.wustl.edu	37	1	26883500	26883500	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	26883500	26883500	T	C	SNP	RPS6KA1	ENST00000531382	human	ensembl	74_37	+1	known	silent	c.1020	p.R340	0.291	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676				110	0	0	93	5	5.10204
GPR3	0	genome.wustl.edu	37	1	27720612	27720612	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	27720612	27720612	G	T	SNP	GPR3	ENST00000374024	human	ensembl	74_37	+1	known	missense	c.310	p.G104C	0.881	pfam_GPCR_Rhodpsn,prints_GPR_3/6/12_orphan,prints_GPR3,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPR_3/6/12_orphan,prints_GPR3,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR3	HGNC	ENSG00000181773				61	0	0	55	4	6.77966
PRDM16	0	genome.wustl.edu	37	1	3102980	3102980	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	3102980	3102980	T	C	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	missense	c.329	p.L110P	0.893	smart_SET_dom,pfscan_SET_dom	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				48	0	0	32	18	36
SPOCD1	0	genome.wustl.edu	37	1	32280324	32280324	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	32280324	32280324	C	A	SNP	SPOCD1	ENST00000360482	human	ensembl	74_37	-1	known	missense	c.611	p.R204M	0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,superfamily_TFIIS_cen_dom,smart_TFS2M	-	no_errors	SPOCD1	HGNC	ENSG00000134668				123	0	0	109	7	6.03448
LCK	0	genome.wustl.edu	37	1	32745341	32745341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	32745341	32745341	C	T	SNP	LCK	ENST00000333070	human	ensembl	74_37	+1	known	missense	c.1124	p.A375V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LCK	HGNC	ENSG00000182866				202	0	0	132	61	31.6062
MARCKSL1	0	genome.wustl.edu	37	1	32800476	32800476	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	32800476	32800476	A	G	SNP	MARCKSL1	ENST00000329421	human	ensembl	74_37	-1	known	missense	c.310	p.S104P	1.000	pfam_MARCKS,prints_MARCKS	pfam_MARCKS,prints_MARCKS	-	no_errors	MARCKSL1	HGNC	ENSG00000175130				69	0	0	47	10	17.5439
TRIM62	0	genome.wustl.edu	37	1	33613190	33613190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	33613190	33613190	G	A	SNP	TRIM62	ENST00000291416	human	ensembl	74_37	-1	known	missense	c.1016	p.S339L	1.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM62	HGNC	ENSG00000116525				67	0	0	59	17	22.3684
TRIM62	0	genome.wustl.edu	37	1	33625397	33625397	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	33625397	33625397	T	C	SNP	TRIM62	ENST00000291416	human	ensembl	74_37	-1	known	missense	c.653	p.Y218C	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM62	HGNC	ENSG00000116525				114	0	0	91	5	5.20833
CSMD2	0	genome.wustl.edu	37	1	34011774	34011774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	34011774	34011774	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.8963	p.G2988D	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				39	0	0	21	12	36.3636
ZMYM4	0	genome.wustl.edu	37	1	35873680	35873680	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	35873680	35873680	T	C	SNP	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	missense	c.3868	p.F1290L	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				172	0	0	138	12	8
DFFB	0	genome.wustl.edu	37	1	3800085	3800085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	3800085	3800085	G	A	SNP	DFFB	ENST00000378209	human	ensembl	74_37	+1	known	missense	c.797	p.R266H	1.000	pfam_Apoptosis_DFF40	pfam_Apoptosis_DFF40,pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	DFFB	HGNC	ENSG00000169598				69	0	0	45	5	10
MTF1	0	genome.wustl.edu	37	1	38305654	38305654	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	38305654	38305654	C	T	SNP	MTF1	ENST00000373036	human	ensembl	74_37	-1	known	silent	c.585	p.T195	0.995	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786				102	0	0	64	23	26.4368
MFSD2A	0	genome.wustl.edu	37	1	40430970	40430970	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	40430970	40430970	C	T	SNP	MFSD2A	ENST00000372809	human	ensembl	74_37	+1	known	silent	c.480	p.Y160	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD2A	HGNC	ENSG00000168389				70	0	0	66	12	15.3846
CAP1	0	genome.wustl.edu	37	1	40529914	40529914	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	40529914	40529914	T	A	SNP	CAP1	ENST00000372792	human	ensembl	74_37	+1	known	missense	c.310	p.L104M	0.986	pfam_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP1	HGNC	ENSG00000131236				80	0	0	83	6	6.74157
PPT1	0	genome.wustl.edu	37	1	40546070	40546070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	40546070	40546070	C	T	SNP	PPT1	ENST00000433473	human	ensembl	74_37	-1	known	missense	c.626	p.R209Q	1.000	pfam_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT1	HGNC	ENSG00000131238				275	0	0	193	77	28.5185
PPT1	0	genome.wustl.edu	37	1	40555088	40555088	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	40555088	40555088	T	C	SNP	PPT1	ENST00000433473	human	ensembl	74_37	-1	known	missense	c.530	p.Q177R	0.998	pfam_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT1	HGNC	ENSG00000131238				94	0	0	93	5	5.10204
FOXJ3	0	genome.wustl.edu	37	1	42645440	42645440	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	42645440	42645440	G	A	SNP	FOXJ3	ENST00000361346	human	ensembl	74_37	-1	known	missense	c.1810	p.R604W	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815				187	0	0	153	14	8.38323
SLC2A1	0	genome.wustl.edu	37	1	43393384	43393384	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	43393384	43393384	G	A	SNP	SLC2A1	ENST00000426263	human	ensembl	74_37	-1	known	silent	c.1170	p.I390	0.593	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394				29	0	0	15	7	31.8182
EBNA1BP2	0	genome.wustl.edu	37	1	43636531	43636531	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	43636531	43636531	C	T	SNP	EBNA1BP2	ENST00000431635	human	ensembl	74_37	-1	known	missense	c.508	p.A170T	0.512	pfam_Ebp2	pfam_Ebp2	-	no_errors	EBNA1BP2	HGNC	ENSG00000117395				210	0	0	161	50	23.6967
ZSWIM5	0	genome.wustl.edu	37	1	45484249	45484249	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	45484249	45484249	A	G	SNP	ZSWIM5	ENST00000359600	human	ensembl	74_37	-1	known	silent	c.3435	p.A1145	0.993	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415				157	0	0	131	28	17.6101
MUTYH	0	genome.wustl.edu	37	1	45797709	45797709	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	45797709	45797709	T	C	SNP	MUTYH	ENST00000450313	human	ensembl	74_37	-1	known	missense	c.983	p.D328G	0.302	NULL	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,superfamily_NUDIX_hydrolase_dom-like,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	MUTYH	HGNC	ENSG00000132781				112	0	0	84	6	6.66667
AKR1A1	0	genome.wustl.edu	37	1	46033700	46033700	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	46033700	46033700	T	C	SNP	AKR1A1	ENST00000351829	human	ensembl	74_37	+1	known	missense	c.403	p.Y135H	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1A1	HGNC	ENSG00000117448				42	0	0	35	4	10.2564
DMBX1	0	genome.wustl.edu	37	1	46977911	46977911	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	46977911	46977911	G	T	SNP	DMBX1	ENST00000371956	human	ensembl	74_37	+1	known	silent	c.894	p.A298	0.001	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	DMBX1	HGNC	ENSG00000197587				30	0	0	32	4	11.1111
CYP4X1	0	genome.wustl.edu	37	1	47512210	47512210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	47512210	47512210	C	T	SNP	CYP4X1	ENST00000371901	human	ensembl	74_37	+1	known	missense	c.1145	p.P382L	0.487	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4X1	HGNC	ENSG00000186377				72	0	0	58	14	19.4444
ZFYVE9	0	genome.wustl.edu	37	1	52805802	52805802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	52805802	52805802	G	A	SNP	ZFYVE9	ENST00000287727	human	ensembl	74_37	+1	known	missense	c.3838	p.V1280I	0.005	pfam_DUF3480,pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_SARA_Smad-bd,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE9	HGNC	ENSG00000157077				47	0	0	37	15	28.8462
ZCCHC11	0	genome.wustl.edu	37	1	52940630	52940630	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	52940630	52940630	G	A	SNP	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	silent	c.2601	p.T867	0.001	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				50	0	0	48	24	33.3333
ZYG11B	0	genome.wustl.edu	37	1	53237431	53237431	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	53237431	53237431	C	T	SNP	ZYG11B	ENST00000294353	human	ensembl	74_37	+1	known	silent	c.936	p.G312	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	ZYG11B	HGNC	ENSG00000162378				135	0	0	96	30	23.8095
TMEM59	0	genome.wustl.edu	37	1	54509118	54509118	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	54509118	54509118	G	A	SNP	TMEM59	ENST00000234831	human	ensembl	74_37	-1	known	silent	c.471	p.S157	1.000	pfam_Uncharacterised_TMEM59	pfam_Uncharacterised_TMEM59,superfamily_Prot_inh_Kunz-m	-	no_errors	TMEM59	HGNC	ENSG00000116209				67	0	0	64	5	7.24638
ACOT11	0	genome.wustl.edu	37	1	55073633	55073633	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	55073633	55073633	G	A	SNP	ACOT11	ENST00000371316	human	ensembl	74_37	+1	known	silent	c.1521	p.A507	0.007	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,pfam_Thioestr_supf,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	ACOT11	HGNC	ENSG00000162390				113	0	0	81	20	19.802
FGGY	0	genome.wustl.edu	37	1	59812011	59812011	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	59812011	59812011	T	C	SNP	FGGY	ENST00000303721	human	ensembl	74_37	+1	known	missense	c.406	p.Y136H	0.809	pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456				82	0	0	43	7	14
HOOK1	0	genome.wustl.edu	37	1	60336688	60336688	+	RNA	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	60336688	60336688	T	A	SNP	HOOK1	ENST00000491135	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.066	-	-	-	no_errors	HOOK1	HGNC	ENSG00000134709				22	0	0	26	10	27.7778
CHD5	0	genome.wustl.edu	37	1	6188970	6188970	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	6188970	6188970	A	G	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	missense	c.3547	p.S1183P	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				67	0	0	43	14	24.5614
ANGPTL3	0	genome.wustl.edu	37	1	63064448	63064448	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	63064448	63064448	C	A	SNP	ANGPTL3	ENST00000371129	human	ensembl	74_37	+1	known	missense	c.577	p.H193N	0.994	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL3	HGNC	ENSG00000132855				47	0	0	43	18	29.5082
ITGB3BP	0	genome.wustl.edu	37	1	63920100	63920100	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	63920100	63920100	G	T	SNP	ITGB3BP	ENST00000371092	human	ensembl	74_37	-1	known	silent	c.495	p.S165	0.002	pfam_CENP-R	pfam_CENP-R	-	no_errors	ITGB3BP	HGNC	ENSG00000142856				45	0	0	48	7	12.7273
ROR1	0	genome.wustl.edu	37	1	64624767	64624767	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	64624767	64624767	C	T	SNP	ROR1	ENST00000371079	human	ensembl	74_37	+1	known	silent	c.1278	p.C426	0.996	pirsf_Tyr_kinase_rcpt_ROR	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR1	HGNC	ENSG00000185483				118	0	0	107	14	11.5702
ESPN	0	genome.wustl.edu	37	1	6520165	6520165	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	6520165	6520165	C	T	SNP	ESPN	ENST00000377828	human	ensembl	74_37	+1	known	nonsense	c.2524	p.R842*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_WH2_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_WH2_dom	-	no_errors	ESPN	HGNC	ENSG00000187017				55	0	0	47	6	11.3208
JAK1	0	genome.wustl.edu	37	1	65310493	65310493	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	65310493	65310493	C	T	SNP	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	missense	c.2195	p.G732D	0.998	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				87	0	0	79	9	10.2273
JAK1	0	genome.wustl.edu	37	1	65310571	65310571	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	65310571	65310571	T	G	SNP	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	missense	c.2117	p.E706A	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				60	0	0	55	4	6.77966
NOL9	0	genome.wustl.edu	37	1	6589186	6589186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	6589186	6589186	C	T	SNP	NOL9	ENST00000377705	human	ensembl	74_37	-1	known	missense	c.1693	p.A565T	0.878	pfam_Pre-mRNA_cleavage_cplxII_Clp1	pfam_Pre-mRNA_cleavage_cplxII_Clp1,superfamily_P-loop_NTPase	-	no_errors	NOL9	HGNC	ENSG00000162408				55	0	0	38	17	30.9091
LRRC7	0	genome.wustl.edu	37	1	70488956	70488956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	70488956	70488956	G	A	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.1579	p.A527T	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				125	0	0	102	12	10.5263
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74716398	74716398	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	74716398	74716398	G	A	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	missense	c.620	p.R207H	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				57	0	0	40	20	33.3333
CAMTA1	0	genome.wustl.edu	37	1	7792523	7792523	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	7792523	7792523	T	C	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.2930	p.M977T	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				57	0	0	41	6	12.766
NEXN	0	genome.wustl.edu	37	1	78392295	78392295	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	78392295	78392295	T	C	SNP	NEXN	ENST00000334785	human	ensembl	74_37	+1	known	missense	c.686	p.M229T	0.596	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	NEXN	HGNC	ENSG00000162614				78	0	0	78	5	6.0241
IFI44L	0	genome.wustl.edu	37	1	79107475	79107475	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	79107475	79107475	C	T	SNP	IFI44L	ENST00000370751	human	ensembl	74_37	+1	known	missense	c.1340	p.A447V	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	IFI44L	HGNC	ENSG00000137959				237	1	0.420168	197	68	25.6604
ELTD1	0	genome.wustl.edu	37	1	79356867	79356867	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	79356867	79356867	A	T	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	missense	c.2045	p.V682D	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618				47	0	0	37	9	19.5652
TNFRSF9	0	genome.wustl.edu	37	1	7995165	7995165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	7995165	7995165	G	A	SNP	TNFRSF9	ENST00000377507	human	ensembl	74_37	-1	known	missense	c.452	p.T151M	0.973	smart_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9	-	no_errors	TNFRSF9	HGNC	ENSG00000049249				65	0	0	43	29	40.2778
WDR63	0	genome.wustl.edu	37	1	85560140	85560140	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	85560140	85560140	C	T	SNP	WDR63	ENST00000294664	human	ensembl	74_37	+1	known	nonsense	c.1075	p.R359*	0.894	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR63	HGNC	ENSG00000162643				247	0	0	310	24	7.18563
CYR61	0	genome.wustl.edu	37	1	86047684	86047684	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	86047684	86047684	T	C	SNP	CYR61	ENST00000451137	human	ensembl	74_37	+1	known	silent	c.351	p.C117	1.000	pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CYR61	HGNC	ENSG00000142871				120	0	0	111	9	7.5
SLC44A3	0	genome.wustl.edu	37	1	95323005	95323005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	95323005	95323005	C	T	SNP	SLC44A3	ENST00000271227	human	ensembl	74_37	+1	known	missense	c.1187	p.A396V	0.962	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A3	HGNC	ENSG00000143036				115	0	0	87	38	30.4
ABCC2	0	genome.wustl.edu	37	10	101591751	101591751	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	101591751	101591751	G	T	SNP	ABCC2	ENST00000370449	human	ensembl	74_37	+1	known	missense	c.3121	p.A1041S	0.015	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839				175	0	0	173	18	9.42408
FAM178A	0	genome.wustl.edu	37	10	102676365	102676365	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	102676365	102676365	A	G	SNP	FAM178A	ENST00000370269	human	ensembl	74_37	+1	known	missense	c.223	p.K75E	1.000	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906				52	0	0	53	5	8.62069
KAZALD1	0	genome.wustl.edu	37	10	102822357	102822357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	102822357	102822357	C	T	SNP	KAZALD1	ENST00000370200	human	ensembl	74_37	+1	known	missense	c.8	p.P3L	0.001	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Immunoglobulin,pfam_IGFBP-like,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	-	no_errors	KAZALD1	HGNC	ENSG00000107821				10	0	0	12	4	25
CYP17A1	0	genome.wustl.edu	37	10	104592406	104592406	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	104592406	104592406	T	C	SNP	CYP17A1	ENST00000369887	human	ensembl	74_37	-1	known	missense	c.1001	p.Q334R	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP17A1	HGNC	ENSG00000148795				107	0	0	86	14	14
COL17A1	0	genome.wustl.edu	37	10	105795035	105795035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	105795035	105795035	G	A	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	missense	c.3605	p.S1202L	0.947	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				20	0	0	18	6	25
CCDC147	0	genome.wustl.edu	37	10	106166475	106166475	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	106166475	106166475	T	C	SNP	CCDC147	ENST00000369704	human	ensembl	74_37	+1	known	missense	c.2180	p.I727T	1.000	superfamily_Homeodomain-like	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051				158	0	0	164	9	5.20231
IDI2	0	genome.wustl.edu	37	10	1070565	1070565	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	1070565	1070565	G	T	SNP	IDI2	ENST00000277517	human	ensembl	74_37	-1	known	silent	c.99	p.A33	0.000	superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	-	no_errors	IDI2	HGNC	ENSG00000148377				49	0	0	35	18	33.9623
XPNPEP1	0	genome.wustl.edu	37	10	111624956	111624956	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	111624956	111624956	A	T	SNP	XPNPEP1	ENST00000502935	human	ensembl	74_37	-1	known	missense	c.1987	p.S663T	0.998	NULL	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP1	HGNC	ENSG00000108039				104	0	0	90	10	10
SMC3	0	genome.wustl.edu	37	10	112361628	112361628	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	112361628	112361628	C	T	SNP	SMC3	ENST00000361804	human	ensembl	74_37	+1	known	silent	c.2878	p.L960	0.998	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055				88	0	0	103	6	5.50459
PNLIPRP3	0	genome.wustl.edu	37	10	118196325	118196325	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	118196325	118196325	A	C	SNP	PNLIPRP3	ENST00000369230	human	ensembl	74_37	+1	known	missense	c.152	p.K51T	0.059	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837				117	0	0	111	14	11.2
PROSER2	0	genome.wustl.edu	37	10	11908667	11908667	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	11908667	11908667	G	A	SNP	PROSER2	ENST00000277570	human	ensembl	74_37	+1	known	silent	c.276	p.P92	0.427	NULL	NULL	-	no_errors	PROSER2	HGNC	ENSG00000148426				52	0	0	30	8	21.0526
EMX2	0	genome.wustl.edu	37	10	119303110	119303110	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	119303110	119303110	C	A	SNP	EMX2	ENST00000553456	human	ensembl	74_37	+1	known	nonsense	c.332	p.S111*	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_HTH_motif	-	no_errors	EMX2	HGNC	ENSG00000170370				193	0	0	177	10	5.34759
CPXM2	0	genome.wustl.edu	37	10	125516743	125516743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	125516743	125516743	C	T	SNP	CPXM2	ENST00000241305	human	ensembl	74_37	-1	known	missense	c.1903	p.V635M	1.000	smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898				141	0	0	118	42	26.25
LHPP	0	genome.wustl.edu	37	10	126186604	126186604	+	Splice_Site	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	126186604	126186604	G	T	SNP	LHPP	ENST00000368842	human	ensembl	74_37	+1	known	splice_site	c.532-1	e5-1	1.000	-	-	-	no_errors	LHPP	HGNC	ENSG00000107902				60	0	0	32	15	31.9149
MMP21	0	genome.wustl.edu	37	10	127462511	127462511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	127462511	127462511	G	A	SNP	MMP21	ENST00000368808	human	ensembl	74_37	-1	known	missense	c.586	p.R196C	0.157	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP21	HGNC	ENSG00000154485				16	0	0	17	7	29.1667
ADAM12	0	genome.wustl.edu	37	10	128076637	128076637	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	128076637	128076637	G	A	SNP	ADAM12	ENST00000368679	human	ensembl	74_37	-1	known	silent	c.78	p.C26	0.002	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM12	HGNC	ENSG00000148848				21	0	0	15	8	34.7826
DOCK1	0	genome.wustl.edu	37	10	129245732	129245732	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	129245732	129245732	G	A	SNP	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	missense	c.5425	p.A1809T	0.945	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				22	0	0	23	6	20.6897
PWWP2B	0	genome.wustl.edu	37	10	134219544	134219544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	134219544	134219544	G	A	SNP	PWWP2B	ENST00000305233	human	ensembl	74_37	+1	known	missense	c.1540	p.G514S	0.812	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	PWWP2B	HGNC	ENSG00000171813				80	0	0	53	21	28.3784
KNDC1	0	genome.wustl.edu	37	10	135015215	135015215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	135015215	135015215	C	T	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	missense	c.3206	p.T1069I	0.001	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				10	0	0	13	3	18.75
NMT2	0	genome.wustl.edu	37	10	15175100	15175100	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	15175100	15175100	T	C	SNP	NMT2	ENST00000378165	human	ensembl	74_37	-1	known	missense	c.554	p.D185G	1.000	pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT2	HGNC	ENSG00000152465				98	0	0	76	9	10.5882
CUBN	0	genome.wustl.edu	37	10	17146585	17146585	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	17146585	17146585	A	C	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.1250	p.F417C	0.239	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				27	0	0	19	3	13.6364
ST8SIA6	0	genome.wustl.edu	37	10	17363172	17363172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	17363172	17363172	G	A	SNP	ST8SIA6	ENST00000377602	human	ensembl	74_37	-1	known	missense	c.902	p.P301L	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA6	HGNC	ENSG00000148488				209	0	0	225	14	5.85774
CACNB2	0	genome.wustl.edu	37	10	18828510	18828510	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	18828510	18828510	C	T	SNP	CACNB2	ENST00000324631	human	ensembl	74_37	+1	known	nonsense	c.1840	p.R614*	1.000	NULL	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995				69	0	0	47	9	16.0714
PLXDC2	0	genome.wustl.edu	37	10	20465998	20465998	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	20465998	20465998	G	A	SNP	PLXDC2	ENST00000377252	human	ensembl	74_37	+1	known	silent	c.954	p.S318	0.980	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	-	no_errors	PLXDC2	HGNC	ENSG00000120594				117	0	0	95	36	27.4809
PIP4K2A	0	genome.wustl.edu	37	10	22880634	22880634	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	22880634	22880634	T	C	SNP	PIP4K2A	ENST00000376573	human	ensembl	74_37	-1	known	missense	c.416	p.D139G	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2A	HGNC	ENSG00000150867				81	0	0	68	5	6.84932
ARMC3	0	genome.wustl.edu	37	10	23319585	23319585	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	23319585	23319585	A	G	SNP	ARMC3	ENST00000298032	human	ensembl	74_37	+1	known	silent	c.2106	p.V702	0.000	NULL	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309				70	0	0	70	5	6.66667
KIAA1217	0	genome.wustl.edu	37	10	24832970	24832970	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	24832970	24832970	A	G	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.4771	p.T1591A	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				109	0	0	66	23	25.8427
KIAA1217	0	genome.wustl.edu	37	10	24835181	24835181	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	24835181	24835181	C	T	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	silent	c.5760	p.S1920	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				72	0	0	58	4	6.45161
MYO3A	0	genome.wustl.edu	37	10	26455050	26455050	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	26455050	26455050	C	A	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	silent	c.3054	p.T1018	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				213	0	0	191	26	11.9816
YME1L1	0	genome.wustl.edu	37	10	27436425	27436425	+	Splice_Site	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	27436425	27436425	A	G	SNP	YME1L1	ENST00000326799	human	ensembl	74_37	-1	known	splice_site	c.339+2	e3+2	0.000	-	-	-	no_errors	YME1L1	HGNC	ENSG00000136758				45	0	0	46	3	6.12245
ZNF248	0	genome.wustl.edu	37	10	38121220	38121220	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	38121220	38121220	T	C	SNP	ZNF248	ENST00000357328	human	ensembl	74_37	-1	known	missense	c.1063	p.N355D	0.253	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105				88	0	0	93	5	5.10204
BMS1	0	genome.wustl.edu	37	10	43319100	43319100	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	43319100	43319100	G	A	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	silent	c.3324	p.A1108	1.000	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				80	0	0	54	18	25
OGDHL	0	genome.wustl.edu	37	10	50946001	50946001	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	50946001	50946001	G	A	SNP	OGDHL	ENST00000374103	human	ensembl	74_37	-1	known	missense	c.2509	p.R837C	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444				216	0	0	148	48	24.4898
AGAP6	0	genome.wustl.edu	37	10	51769465	51769465	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	51769465	51769465	A	G	SNP	AGAP6	ENST00000374056	human	ensembl	74_37	+1	known	missense	c.1511	p.E504G	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP6	HGNC	ENSG00000204149				247	1	0.403226	210	31	12.8631
DKK1	0	genome.wustl.edu	37	10	54074807	54074807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	54074807	54074807	G	A	SNP	DKK1	ENST00000373970	human	ensembl	74_37	+1	known	missense	c.368	p.R123H	0.999	pfam_Dickkopf_N	pfam_Dickkopf_N	-	no_errors	DKK1	HGNC	ENSG00000107984				50	0	0	37	16	30.1887
FBXO18	0	genome.wustl.edu	37	10	5948257	5948257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	5948257	5948257	C	T	SNP	FBXO18	ENST00000379999	human	ensembl	74_37	+1	known	missense	c.568	p.R190W	0.009	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom,superfamily_P-loop_NTPase,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO18	HGNC	ENSG00000134452				30	0	0	21	8	27.5862
SLC16A9	0	genome.wustl.edu	37	10	61412656	61412656	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	61412656	61412656	G	A	SNP	SLC16A9	ENST00000395347	human	ensembl	74_37	-1	known	silent	c.1404	p.G468	0.249	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A9	HGNC	ENSG00000165449				85	0	0	75	6	7.40741
ANK3	0	genome.wustl.edu	37	10	61846435	61846435	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	61846435	61846435	C	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.3748	p.G1250W	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				76	0	0	94	12	11.3208
TET1	0	genome.wustl.edu	37	10	70426987	70426987	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	70426987	70426987	C	T	SNP	TET1	ENST00000373644	human	ensembl	74_37	+1	known	silent	c.4647	p.T1549	0.499	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				29	0	0	18	4	18.1818
TET1	0	genome.wustl.edu	37	10	70450635	70450635	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	70450635	70450635	A	G	SNP	TET1	ENST00000373644	human	ensembl	74_37	+1	known	silent	c.5475	p.S1825	0.913	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				101	0	0	79	8	9.1954
DDX50	0	genome.wustl.edu	37	10	70696828	70696828	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	70696828	70696828	C	T	SNP	DDX50	ENST00000373585	human	ensembl	74_37	+1	known	nonsense	c.1732	p.R578*	1.000	pfam_GUCT	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625				116	0	0	92	24	20.6897
SUPV3L1	0	genome.wustl.edu	37	10	70968476	70968476	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	70968476	70968476	G	T	SNP	SUPV3L1	ENST00000359655	human	ensembl	74_37	+1	known	silent	c.2046	p.T682	0.215	NULL	pfam_SUV3_C,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	-	no_errors	SUPV3L1	HGNC	ENSG00000156502				89	0	0	76	14	15.5556
SGPL1	0	genome.wustl.edu	37	10	72630885	72630885	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	72630885	72630885	T	C	SNP	SGPL1	ENST00000373202	human	ensembl	74_37	+1	known	silent	c.891	p.P297	0.367	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SGPL1	HGNC	ENSG00000166224				64	0	0	46	24	34.2857
CDH23	0	genome.wustl.edu	37	10	73567408	73567408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	73567408	73567408	G	A	SNP	CDH23	ENST00000398788	human	ensembl	74_37	+1	known	missense	c.1724	p.R575H	0.097	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				36	0	0	25	6	19.3548
OIT3	0	genome.wustl.edu	37	10	74658557	74658557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	74658557	74658557	C	T	SNP	OIT3	ENST00000334011	human	ensembl	74_37	+1	known	missense	c.197	p.A66V	1.000	NULL	pfam_ZP_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	OIT3	HGNC	ENSG00000138315				52	0	0	44	21	32.3077
CAMK2G	0	genome.wustl.edu	37	10	75620588	75620588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	75620588	75620588	C	T	SNP	CAMK2G	ENST00000423381	human	ensembl	74_37	-1	known	missense	c.220	p.V74M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2G	HGNC	ENSG00000148660				105	0	0	102	8	7.27273
ZMIZ1	0	genome.wustl.edu	37	10	81051995	81051995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	81051995	81051995	C	T	SNP	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	missense	c.839	p.A280V	0.999	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				90	0	0	73	5	6.41026
ZMIZ1	0	genome.wustl.edu	37	10	81060696	81060696	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	81060696	81060696	C	T	SNP	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	silent	c.2016	p.C672	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				49	0	0	38	3	7.31707
CDHR1	0	genome.wustl.edu	37	10	85973974	85973974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	85973974	85973974	G	A	SNP	CDHR1	ENST00000372117	human	ensembl	74_37	+1	known	missense	c.2177	p.R726H	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600				90	0	0	49	29	37.1795
PAPSS2	0	genome.wustl.edu	37	10	89487166	89487166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	89487166	89487166	G	A	SNP	PAPSS2	ENST00000456849	human	ensembl	74_37	+1	known	missense	c.1006	p.A336T	1.000	pfam_Sulfurylase_cat_dom,superfamily_PUA-like_domain,tigrfam_Sulphate_adenylyltransferase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,superfamily_P-loop_NTPase,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS2	HGNC	ENSG00000198682				45	0	0	35	19	35.1852
CH25H	0	genome.wustl.edu	37	10	90966256	90966256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	90966256	90966256	C	T	SNP	CH25H	ENST00000371852	human	ensembl	74_37	-1	known	missense	c.794	p.R265Q	0.287	NULL	pfam_Fatty_acid_hydroxylase	-	no_errors	CH25H	HGNC	ENSG00000138135				20	0	0	19	7	26.9231
IFIT5	0	genome.wustl.edu	37	10	91177661	91177661	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	91177661	91177661	A	G	SNP	IFIT5	ENST00000371795	human	ensembl	74_37	+1	known	silent	c.705	p.E235	0.977	pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT5	HGNC	ENSG00000152778				62	0	0	52	26	33.3333
MYOF	0	genome.wustl.edu	37	10	95157162	95157162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	95157162	95157162	C	T	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.1273	p.V425I	0.558	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				43	0	0	34	17	33.3333
ALDH18A1	0	genome.wustl.edu	37	10	97402812	97402812	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	97402812	97402812	G	A	SNP	ALDH18A1	ENST00000371224	human	ensembl	74_37	-1	known	silent	c.240	p.A80	0.113	pfam_Asp/Glu/Uridylate_kinase,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,tigrfam_P5_carboxy_syn	pfam_Asp/Glu/Uridylate_kinase,pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,prints_Glu/AcGlu_kinase,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	-	no_errors	ALDH18A1	HGNC	ENSG00000059573				74	0	0	37	20	35.0877
CCNJ	0	genome.wustl.edu	37	10	97817760	97817760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	97817760	97817760	C	T	SNP	CCNJ	ENST00000465148	human	ensembl	74_37	+1	known	missense	c.914	p.T305M	0.640	NULL	pfam_Cyclin_C-dom,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJ	HGNC	ENSG00000107443				227	0	0	203	13	6.01852
TM9SF3	0	genome.wustl.edu	37	10	98336438	98336438	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	98336438	98336438	A	C	SNP	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	missense	c.251	p.L84R	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				144	0	0	143	9	5.92105
SLIT1	0	genome.wustl.edu	37	10	98766417	98766417	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	98766417	98766417	A	G	SNP	SLIT1	ENST00000266058	human	ensembl	74_37	-1	known	silent	c.3402	p.T1134	0.552	smart_Fol_N,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EG-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122				30	0	0	21	3	12.5
RRP12	0	genome.wustl.edu	37	10	99141484	99141484	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	99141484	99141484	C	T	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	silent	c.1308	p.T436	0.998	superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				43	0	0	33	13	28.2609
CRTAC1	0	genome.wustl.edu	37	10	99677300	99677300	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	99677300	99677300	C	T	SNP	CRTAC1	ENST00000370597	human	ensembl	74_37	-1	known	silent	c.672	p.A224	0.006	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	-	no_errors	CRTAC1	HGNC	ENSG00000095713				62	0	0	30	16	34.7826
MUC6	0	genome.wustl.edu	37	11	1026404	1026404	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	1026404	1026404	G	A	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	silent	c.2469	p.P823	0.568	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				38	0	0	29	7	19.4444
MMP12	0	genome.wustl.edu	37	11	102742539	102742539	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	102742539	102742539	C	T	SNP	MMP12	ENST00000326227	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MMP12	HGNC	ENSG00000110347				31	0	0	31	15	32.6087
CWF19L2	0	genome.wustl.edu	37	11	107219755	107219755	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	107219755	107219755	G	A	SNP	CWF19L2	ENST00000282251	human	ensembl	74_37	-1	known	missense	c.2110	p.R704W	0.013	pfam_Cwf19-like_C_dom-1,superfamily_HIT-like	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404				44	0	0	47	18	27.6923
CUL5	0	genome.wustl.edu	37	11	107959318	107959318	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	107959318	107959318	T	C	SNP	CUL5	ENST00000393094	human	ensembl	74_37	+1	known	silent	c.1243	p.L415	1.000	pfam_Cullin_N,superfamily_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266				61	0	0	68	8	10.5263
ATM	0	genome.wustl.edu	37	11	108201105	108201105	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	108201105	108201105	G	T	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.7472	p.W2491L	1.000	superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				165	0	0	130	40	23.5294
MUC2	0	genome.wustl.edu	37	11	1095795	1095795	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	1095795	1095795	C	T	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	silent	c.6306	p.R2102	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				18	0	0	14	9	39.1304
C11orf52	0	genome.wustl.edu	37	11	111796804	111796804	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	111796804	111796804	A	C	SNP	C11orf52	ENST00000278601	human	ensembl	74_37	+1	known	missense	c.253	p.S85R	0.693	NULL	NULL	-	no_errors	C11orf52	HGNC	ENSG00000149300				33	0	0	31	8	20.5128
DIXDC1	0	genome.wustl.edu	37	11	111866190	111866190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	111866190	111866190	G	A	SNP	DIXDC1	ENST00000440460	human	ensembl	74_37	+1	known	missense	c.1588	p.D530N	1.000	NULL	pfam_DIX,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_DIX,pfscan_CH-domain,pfscan_DIX	-	no_errors	DIXDC1	HGNC	ENSG00000150764				64	0	0	42	19	31.1475
ZW10	0	genome.wustl.edu	37	11	113639659	113639659	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	113639659	113639659	A	G	SNP	ZW10	ENST00000200135	human	ensembl	74_37	-1	known	missense	c.136	p.Y46H	1.000	pfam_RZZ-complex_Zw10	pfam_RZZ-complex_Zw10	-	no_errors	ZW10	HGNC	ENSG00000086827				116	0	0	141	11	7.23684
SIDT2	0	genome.wustl.edu	37	11	117049952	117049952	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	117049952	117049952	C	T	SNP	SIDT2	ENST00000525339	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.045	-	-	-	no_errors	SIDT2	HGNC	ENSG00000149577				15	0	0	17	13	43.3333
UBE4A	0	genome.wustl.edu	37	11	118252213	118252213	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	118252213	118252213	A	G	SNP	UBE4A	ENST00000431736	human	ensembl	74_37	+1	known	missense	c.2005	p.T669A	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4A	HGNC	ENSG00000110344				121	0	0	127	10	7.29927
PHLDB1	0	genome.wustl.edu	37	11	118516165	118516165	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	118516165	118516165	C	T	SNP	PHLDB1	ENST00000361417	human	ensembl	74_37	+1	known	silent	c.3213	p.H1071	0.824	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144				96	0	0	71	30	29.703
FOXR1	0	genome.wustl.edu	37	11	118849724	118849724	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	118849724	118849724	C	T	SNP	FOXR1	ENST00000317011	human	ensembl	74_37	+1	known	missense	c.194	p.P65L	0.121	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXR1	HGNC	ENSG00000176302				228	0	0	190	26	12.037
ARHGEF12	0	genome.wustl.edu	37	11	120317769	120317769	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	120317769	120317769	A	T	SNP	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	missense	c.1507	p.I503F	1.000	pfam_RGS-like_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914				192	0	0	173	13	6.98925
GRIK4	0	genome.wustl.edu	37	11	120776003	120776003	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	120776003	120776003	A	C	SNP	GRIK4	ENST00000527524	human	ensembl	74_37	+1	known	missense	c.1277	p.N426T	1.000	smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403				232	0	0	170	12	6.59341
TBCEL	0	genome.wustl.edu	37	11	120929174	120929174	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	120929174	120929174	T	A	SNP	TBCEL	ENST00000422003	human	ensembl	74_37	+1	known	missense	c.833	p.I278K	0.995	NULL	pfscan_Ubiquitin_supergroup	-	no_errors	TBCEL	HGNC	ENSG00000154114				143	0	0	176	13	6.87831
TECTA	0	genome.wustl.edu	37	11	121000699	121000699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	121000699	121000699	G	A	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.2720	p.R907Q	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				52	0	0	44	10	18.5185
GRAMD1B	0	genome.wustl.edu	37	11	123483485	123483485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	123483485	123483485	C	T	SNP	GRAMD1B	ENST00000322282	human	ensembl	74_37	+1	known	missense	c.1507	p.R503C	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171				22	0	0	13	3	18.75
ACRV1	0	genome.wustl.edu	37	11	125547803	125547803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	125547803	125547803	G	A	SNP	ACRV1	ENST00000533904	human	ensembl	74_37	-1	known	missense	c.442	p.H148Y	0.001	NULL	NULL	-	no_errors	ACRV1	HGNC	ENSG00000134940				221	0	0	173	63	26.6949
SRPR	0	genome.wustl.edu	37	11	126136701	126136701	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	126136701	126136701	C	T	SNP	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	missense	c.643	p.E215K	1.000	pfam_Sig_recog_particle_rcpt_asu_N	pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	-	no_errors	SRPR	HGNC	ENSG00000182934				183	0	0	120	62	34.0659
KIRREL3	0	genome.wustl.edu	37	11	126396494	126396494	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	126396494	126396494	G	A	SNP	KIRREL3	ENST00000525144	human	ensembl	74_37	-1	known	silent	c.222	p.Y74	0.998	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL3	HGNC	ENSG00000149571				19	0	0	14	8	36.3636
MUC5B	0	genome.wustl.edu	37	11	1265003	1265003	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	1265003	1265003	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.6902	p.P2301H	0.007	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				152	0	0	120	11	8.39695
MUC5B	0	genome.wustl.edu	37	11	1267404	1267404	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	1267404	1267404	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.9303	p.S3101	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				127	0	0	74	24	24.4898
MUC5B	0	genome.wustl.edu	37	11	1275943	1275943	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	1275943	1275943	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.15506	p.P5169L	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				43	0	0	26	7	21.2121
THYN1	0	genome.wustl.edu	37	11	134121181	134121181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	134121181	134121181	C	T	SNP	THYN1	ENST00000341541	human	ensembl	74_37	-1	known	missense	c.65	p.R22H	0.000	NULL	pfam_EVE_domain,superfamily_PUA-like_domain	-	no_errors	THYN1	HGNC	ENSG00000151500				307	0	0	285	30	9.52381
SPON1	0	genome.wustl.edu	37	11	14063134	14063134	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	14063134	14063134	C	T	SNP	SPON1	ENST00000310358	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268				132	0	0	103	38	26.9504
MRGPRX4	0	genome.wustl.edu	37	11	18195721	18195721	+	Silent	SNP	G	G	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	18195721	18195721	G	C	SNP	MRGPRX4	ENST00000314254	human	ensembl	74_37	+1	known	silent	c.918	p.G306	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX4	HGNC	ENSG00000179817				62	0	0	34	13	27.6596
IGSF22	0	genome.wustl.edu	37	11	18743459	18743459	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	18743459	18743459	T	C	SNP	IGSF22	ENST00000513874	human	ensembl	74_37	-1	known	missense	c.239	p.E80G	0.840	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF22	HGNC	ENSG00000179057				93	0	0	98	7	6.66667
MRGPRX2	0	genome.wustl.edu	37	11	19077849	19077849	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	19077849	19077849	A	G	SNP	MRGPRX2	ENST00000329773	human	ensembl	74_37	-1	known	missense	c.101	p.V34A	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX2	HGNC	ENSG00000183695				192	0	0	200	20	9.09091
SLC17A6	0	genome.wustl.edu	37	11	22364897	22364897	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	22364897	22364897	G	A	SNP	SLC17A6	ENST00000263160	human	ensembl	74_37	+1	known	silent	c.444	p.R148	0.845	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664				63	0	0	54	5	8.47458
PAX6	0	genome.wustl.edu	37	11	31823241	31823241	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	31823241	31823241	T	C	SNP	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	silent	c.267	p.K89	0.986	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372				80	0	0	70	9	11.3924
CSTF3	0	genome.wustl.edu	37	11	33124659	33124659	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	33124659	33124659	T	C	SNP	CSTF3	ENST00000323959	human	ensembl	74_37	-1	known	silent	c.657	p.V219	0.998	NULL	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102				78	0	0	83	7	7.77778
RAG1	0	genome.wustl.edu	37	11	36595836	36595836	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	36595836	36595836	T	C	SNP	RAG1	ENST00000299440	human	ensembl	74_37	+1	known	missense	c.982	p.C328R	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349				61	0	0	68	8	10.5263
STIM1	0	genome.wustl.edu	37	11	4045107	4045107	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	4045107	4045107	T	C	SNP	STIM1	ENST00000300737	human	ensembl	74_37	+1	known	missense	c.275	p.L92P	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323				47	0	0	44	7	13.7255
PEX16	0	genome.wustl.edu	37	11	45936234	45936234	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	45936234	45936234	A	G	SNP	PEX16	ENST00000241041	human	ensembl	74_37	-1	known	silent	c.462	p.D154	0.947	pfam_Pex16	pfam_Pex16	-	no_errors	PEX16	HGNC	ENSG00000121680				134	0	0	81	23	22.1154
CHRM4	0	genome.wustl.edu	37	11	46407805	46407805	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	46407805	46407805	G	A	SNP	CHRM4	ENST00000433765	human	ensembl	74_37	-1	known	silent	c.303	p.G101	0.732	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720				30	0	0	24	14	36.8421
ARHGAP1	0	genome.wustl.edu	37	11	46701278	46701278	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	46701278	46701278	A	T	SNP	ARHGAP1	ENST00000311956	human	ensembl	74_37	-1	known	missense	c.947	p.V316D	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP1	HGNC	ENSG00000175220				110	0	0	84	10	10.6383
OR52R1	0	genome.wustl.edu	37	11	4825255	4825255	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	4825255	4825255	A	G	SNP	OR52R1	ENST00000380382	human	ensembl	74_37	-1	known	missense	c.593	p.M198T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937				116	0	0	98	16	14.0351
OR51S1	0	genome.wustl.edu	37	11	4870019	4870019	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	4870019	4870019	G	C	SNP	OR51S1	ENST00000322101	human	ensembl	74_37	-1	known	nonsense	c.420	p.Y140*	0.053	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51S1	HGNC	ENSG00000176922				131	0	0	94	9	8.73786
LOC440040	0	genome.wustl.edu	37	11	49598008	49598008	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	49598008	49598008	G	A	SNP	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035				25	0	0	24	13	35.1351
OR4A5	0	genome.wustl.edu	37	11	51412264	51412264	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	51412264	51412264	C	A	SNP	OR4A5	ENST00000319760	human	ensembl	74_37	-1	known	silent	c.132	p.V44	0.978	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840				52	0	0	40	14	25.9259
OR51I1	0	genome.wustl.edu	37	11	5462646	5462646	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	5462646	5462646	G	T	SNP	OR51I1	ENST00000380211	human	ensembl	74_37	-1	known	missense	c.99	p.F33L	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51I1	HGNC	ENSG00000167359				95	0	0	80	23	22.3301
OR4C15	0	genome.wustl.edu	37	11	55322033	55322033	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	55322033	55322033	T	C	SNP	OR4C15	ENST00000314644	human	ensembl	74_37	+1	known	missense	c.251	p.L84S	0.957	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939				145	0	0	143	16	10.0629
OR5J2	0	genome.wustl.edu	37	11	55944903	55944903	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	55944903	55944903	A	G	SNP	OR5J2	ENST00000312298	human	ensembl	74_37	+1	known	silent	c.810	p.Q270	0.008	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957				72	0	0	49	21	30
OR5J2	0	genome.wustl.edu	37	11	55944912	55944912	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	55944912	55944912	G	A	SNP	OR5J2	ENST00000312298	human	ensembl	74_37	+1	known	silent	c.819	p.V273	0.406	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957				69	0	0	41	17	29.3103
OR5J2	0	genome.wustl.edu	37	11	55944930	55944930	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	55944930	55944930	G	A	SNP	OR5J2	ENST00000312298	human	ensembl	74_37	+1	known	silent	c.837	p.T279	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957				54	0	0	35	14	28.5714
OR5J2	0	genome.wustl.edu	37	11	55944935	55944935	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	55944935	55944935	G	T	SNP	OR5J2	ENST00000312298	human	ensembl	74_37	+1	known	missense	c.842	p.G281V	0.799	pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957				49	0	0	31	13	29.5455
OR5AR1	0	genome.wustl.edu	37	11	56431414	56431414	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	56431414	56431414	T	C	SNP	OR5AR1	ENST00000302969	human	ensembl	74_37	+1	known	missense	c.253	p.F85L	0.036	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AR1	HGNC	ENSG00000172459				199	0	0	201	26	11.4537
TMX2	0	genome.wustl.edu	37	11	57506647	57506647	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	57506647	57506647	T	C	SNP	TMX2	ENST00000278422	human	ensembl	74_37	+1	known	missense	c.659	p.L220P	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX2	HGNC	ENSG00000213593				191	0	0	119	61	33.8889
TAF6L	0	genome.wustl.edu	37	11	62543364	62543364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	62543364	62543364	G	A	SNP	TAF6L	ENST00000294168	human	ensembl	74_37	+1	known	missense	c.109	p.A37T	0.990	pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_TAF_TATA-bd	pfam_TAF_TATA-bd,pfam_DUF1546,superfamily_Histone-fold,smart_TAF_TATA-bd	-	no_errors	TAF6L	HGNC	ENSG00000162227				54	0	0	34	13	27.6596
TAF6L	0	genome.wustl.edu	37	11	62554095	62554095	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	62554095	62554095	G	T	SNP	TAF6L	ENST00000294168	human	ensembl	74_37	+1	known	missense	c.1196	p.S399I	1.000	NULL	pfam_TAF_TATA-bd,pfam_DUF1546,superfamily_Histone-fold,smart_TAF_TATA-bd	-	no_errors	TAF6L	HGNC	ENSG00000162227				17	0	0	21	7	25
GPR137	0	genome.wustl.edu	37	11	64054186	64054186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	64054186	64054186	G	A	SNP	GPR137	ENST00000313074	human	ensembl	74_37	+1	known	missense	c.190	p.A64T	0.996	NULL	NULL	-	no_errors	GPR137	HGNC	ENSG00000173264				241	0	0	133	53	28.4946
MRPL49	0	genome.wustl.edu	37	11	64893062	64893062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	64893062	64893062	G	A	SNP	MRPL49	ENST00000279242	human	ensembl	74_37	+1	known	missense	c.332	p.R111Q	1.000	pfam_Ribosomal_L49/IMG2	pfam_Ribosomal_L49/IMG2	-	no_errors	MRPL49	HGNC	ENSG00000149792				79	0	0	63	20	24.0964
CAPN1	0	genome.wustl.edu	37	11	64972290	64972290	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	64972290	64972290	C	T	SNP	CAPN1	ENST00000279247	human	ensembl	74_37	+1	known	silent	c.1302	p.F434	0.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216				53	0	0	32	13	28.8889
MAP3K11	0	genome.wustl.edu	37	11	65367065	65367065	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	65367065	65367065	C	T	SNP	MAP3K11	ENST00000309100	human	ensembl	74_37	-1	known	missense	c.2006	p.R669H	0.198	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327				42	0	0	32	11	25.5814
AP5B1	0	genome.wustl.edu	37	11	65545802	65545802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	65545802	65545802	G	A	SNP	AP5B1	ENST00000532090	human	ensembl	74_37	-1	novel	missense	c.2162	p.A721V	0.001	NULL	NULL	-	no_errors	AP5B1	HGNC	ENSG00000254470				25	0	0	17	6	26.087
AP5B1	0	genome.wustl.edu	37	11	65546165	65546165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	65546165	65546165	G	A	SNP	AP5B1	ENST00000532090	human	ensembl	74_37	-1	novel	missense	c.1799	p.A600V	0.976	NULL	NULL	-	no_errors	AP5B1	HGNC	ENSG00000254470				13	0	0	7	4	36.3636
CTSW	0	genome.wustl.edu	37	11	65650135	65650135	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	65650135	65650135	C	T	SNP	CTSW	ENST00000307886	human	ensembl	74_37	+1	known	silent	c.594	p.D198	0.664	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSW	HGNC	ENSG00000172543				97	0	0	54	19	26.0274
KLC2	0	genome.wustl.edu	37	11	66033912	66033912	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	66033912	66033912	G	A	SNP	KLC2	ENST00000316924	human	ensembl	74_37	+1	known	missense	c.1736	p.R579Q	1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC2	HGNC	ENSG00000174996				59	0	0	49	20	28.9855
SLC29A2	0	genome.wustl.edu	37	11	66130984	66130984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	66130984	66130984	C	T	SNP	SLC29A2	ENST00000357440	human	ensembl	74_37	-1	known	missense	c.1294	p.A432T	0.498	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	-	no_errors	SLC29A2	HGNC	ENSG00000174669				28	0	0	16	5	23.8095
C11orf80	0	genome.wustl.edu	37	11	66610523	66610523	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	66610523	66610523	C	A	SNP	C11orf80	ENST00000360962	human	ensembl	74_37	+1	known	missense	c.1951	p.L651I	0.107	NULL	NULL	-	no_errors	C11orf80	HGNC	ENSG00000173715				9	0	0	6	3	33.3333
NDUFV1	0	genome.wustl.edu	37	11	67377024	67377024	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	67377024	67377024	T	G	SNP	NDUFV1	ENST00000322776	human	ensembl	74_37	+1	known	missense	c.428	p.L143R	1.000	pfam_NADH_UbQ_OxRdtase_51kDa_su,tigrfam_NADH-UbQ_OxRdtase_suF	pfam_NADH_UbQ_OxRdtase_51kDa_su,pfam_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,pfam_Soluble_ligand-bd,smart_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,tigrfam_NADH-UbQ_OxRdtase_suF	-	no_errors	NDUFV1	HGNC	ENSG00000167792				184	1	0.540541	163	18	9.94475
SUV420H1	0	genome.wustl.edu	37	11	67941281	67941281	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	67941281	67941281	T	C	SNP	SUV420H1	ENST00000304363	human	ensembl	74_37	-1	known	missense	c.643	p.T215A	1.000	smart_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066				93	0	0	80	11	12.0879
CPT1A	0	genome.wustl.edu	37	11	68530165	68530165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	68530165	68530165	G	A	SNP	CPT1A	ENST00000265641	human	ensembl	74_37	-1	known	missense	c.1805	p.T602M	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090				69	0	0	59	10	14.4928
CTTN	0	genome.wustl.edu	37	11	70261793	70261793	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	70261793	70261793	G	A	SNP	CTTN	ENST00000301843	human	ensembl	74_37	+1	known	missense	c.427	p.G143R	1.000	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733				214	0	0	195	19	8.8785
NLRP14	0	genome.wustl.edu	37	11	7065123	7065123	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	7065123	7065123	T	C	SNP	NLRP14	ENST00000299481	human	ensembl	74_37	+1	known	silent	c.1866	p.L622	0.985	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077				101	0	0	101	9	8.18182
INPPL1	0	genome.wustl.edu	37	11	71939260	71939260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	71939260	71939260	G	A	SNP	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	missense	c.209	p.R70H	0.999	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				75	0	0	73	6	7.59494
ARHGEF17	0	genome.wustl.edu	37	11	73071483	73071483	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	73071483	73071483	G	A	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	missense	c.4325	p.R1442Q	0.997	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				169	0	0	149	11	6.875
ARHGEF17	0	genome.wustl.edu	37	11	73071553	73071553	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	73071553	73071553	C	A	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	silent	c.4395	p.A1465	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				93	0	0	85	16	15.8416
MAP6	0	genome.wustl.edu	37	11	75298476	75298476	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	75298476	75298476	A	G	SNP	MAP6	ENST00000304771	human	ensembl	74_37	-1	known	silent	c.2070	p.H690	0.000	NULL	pfam_MAP6/FAM154	-	no_errors	MAP6	HGNC	ENSG00000171533				98	0	0	65	29	30.8511
PPFIBP2	0	genome.wustl.edu	37	11	7586879	7586879	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	7586879	7586879	A	G	SNP	PPFIBP2	ENST00000299492	human	ensembl	74_37	+1	known	missense	c.160	p.I54V	0.948	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387				153	0	0	107	26	19.5489
CCDC83	0	genome.wustl.edu	37	11	85593593	85593593	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	85593593	85593593	G	A	SNP	CCDC83	ENST00000280245	human	ensembl	74_37	+1	known	missense	c.218	p.R73Q	0.011	NULL	NULL	-	no_errors	CCDC83	HGNC	ENSG00000150676				101	0	0	67	25	27.1739
GRM5-AS1	0	genome.wustl.edu	37	11	88241732	88241732	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	88241732	88241732	C	T	SNP	GRM5-AS1	ENST00000526448	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRM5-AS1	HGNC	ENSG00000255082				15	0	0	16	8	33.3333
MTNR1B	0	genome.wustl.edu	37	11	92702976	92702976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	92702976	92702976	C	T	SNP	MTNR1B	ENST00000257068	human	ensembl	74_37	+1	known	missense	c.85	p.R29W	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Mel_1A_rcpt	-	no_errors	MTNR1B	HGNC	ENSG00000134640				23	0	0	13	5	27.7778
CCDC67	0	genome.wustl.edu	37	11	93103271	93103271	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	93103271	93103271	G	A	SNP	CCDC67	ENST00000298050	human	ensembl	74_37	+1	known	silent	c.465	p.K155	1.000	superfamily_MHC_II-assoc_invariant_trimer	superfamily_MHC_II-assoc_invariant_trimer	-	no_errors	CCDC67	HGNC	ENSG00000165325				22	0	0	7	2	22.2222
AMOTL1	0	genome.wustl.edu	37	11	94602448	94602448	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	94602448	94602448	C	A	SNP	AMOTL1	ENST00000433060	human	ensembl	74_37	+1	known	silent	c.2574	p.A858	0.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025				19	0	0	19	3	13.6364
ZNF143	0	genome.wustl.edu	37	11	9492923	9492923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	9492923	9492923	C	T	SNP	ZNF143	ENST00000396602	human	ensembl	74_37	+1	known	missense	c.68	p.A23V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF143	HGNC	ENSG00000166478				108	0	0	69	22	24.1758
SLC5A8	0	genome.wustl.edu	37	12	101555808	101555808	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	101555808	101555808	C	T	SNP	SLC5A8	ENST00000536262	human	ensembl	74_37	-1	known	missense	c.1574	p.S525N	1.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A8	HGNC	ENSG00000256870				258	1	0.3861	279	17	5.74324
CLEC1A	0	genome.wustl.edu	37	12	10224068	10224068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	10224068	10224068	C	T	SNP	CLEC1A	ENST00000315330	human	ensembl	74_37	-1	known	missense	c.707	p.C236Y	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1A	HGNC	ENSG00000150048				130	0	0	104	42	28.7671
SART3	0	genome.wustl.edu	37	12	108918245	108918245	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	108918245	108918245	C	T	SNP	SART3	ENST00000228284	human	ensembl	74_37	-1	known	silent	c.2562	p.A854	0.152	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856				65	0	0	56	17	23.2877
CUX2	0	genome.wustl.edu	37	12	111652089	111652089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	111652089	111652089	G	A	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	missense	c.149	p.R50Q	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				52	0	0	55	8	12.6984
ALDH2	0	genome.wustl.edu	37	12	112230515	112230515	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	112230515	112230515	C	T	SNP	ALDH2	ENST00000261733	human	ensembl	74_37	+1	known	missense	c.1012	p.R338W	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH2	HGNC	ENSG00000111275				14	0	0	10	4	28.5714
HECTD4	0	genome.wustl.edu	37	12	112711506	112711506	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	112711506	112711506	T	G	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.1349	p.Y450S	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				158	0	0	123	12	8.88889
RASAL1	0	genome.wustl.edu	37	12	113553825	113553825	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	113553825	113553825	G	A	SNP	RASAL1	ENST00000546530	human	ensembl	74_37	-1	known	missense	c.763	p.R255C	1.000	superfamily_C2_dom,smart_RasGAP	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASAL1	HGNC	ENSG00000111344				67	0	0	49	10	16.9492
LHX5	0	genome.wustl.edu	37	12	113907132	113907132	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	113907132	113907132	G	A	SNP	LHX5	ENST00000261731	human	ensembl	74_37	-1	known	silent	c.192	p.C64	0.968	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX5	HGNC	ENSG00000089116				57	0	0	48	4	7.69231
FBXW8	0	genome.wustl.edu	37	12	117365934	117365934	+	Splice_Site	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	117365934	117365934	T	C	SNP	FBXW8	ENST00000309909	human	ensembl	74_37	+1	known	splice_site	c.423+2	e2+2	1.000	-	-	-	no_errors	FBXW8	HGNC	ENSG00000174989				74	0	0	72	9	11.1111
SRRM4	0	genome.wustl.edu	37	12	119563220	119563220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	119563220	119563220	C	T	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	missense	c.550	p.R184C	0.791	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767				55	0	0	49	13	20.9677
HSPB8	0	genome.wustl.edu	37	12	119617314	119617314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	119617314	119617314	C	T	SNP	HSPB8	ENST00000281938	human	ensembl	74_37	+1	known	missense	c.197	p.S66L	0.998	NULL	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	HSPB8	HGNC	ENSG00000152137				76	0	0	50	21	29.5775
GCN1L1	0	genome.wustl.edu	37	12	120569133	120569133	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	120569133	120569133	G	A	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	silent	c.7419	p.D2473	0.942	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				115	0	0	60	6	9.09091
GCN1L1	0	genome.wustl.edu	37	12	120597681	120597681	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	120597681	120597681	G	A	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	silent	c.2697	p.N899	0.864	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				70	0	0	44	7	13.7255
SPPL3	0	genome.wustl.edu	37	12	121205374	121205374	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	121205374	121205374	T	C	SNP	SPPL3	ENST00000353487	human	ensembl	74_37	-1	known	missense	c.796	p.M266V	1.000	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	-	no_errors	SPPL3	HGNC	ENSG00000157837				58	0	0	60	6	9.09091
CAMKK2	0	genome.wustl.edu	37	12	121678602	121678602	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	121678602	121678602	A	G	SNP	CAMKK2	ENST00000324774	human	ensembl	74_37	-1	known	missense	c.1667	p.V556A	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKK2	HGNC	ENSG00000110931				88	0	0	66	4	5.71429
TMEM120B	0	genome.wustl.edu	37	12	122218958	122218958	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	122218958	122218958	G	A	SNP	TMEM120B	ENST00000538055	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMEM120B	HGNC	ENSG00000188735				44	0	0	52	8	13.3333
LRRC43	0	genome.wustl.edu	37	12	122684777	122684777	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	122684777	122684777	T	G	SNP	LRRC43	ENST00000339777	human	ensembl	74_37	+1	known	missense	c.1391	p.V464G	0.110	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113				139	0	0	102	25	19.685
PITPNM2	0	genome.wustl.edu	37	12	123471271	123471271	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	123471271	123471271	G	A	SNP	PITPNM2	ENST00000320201	human	ensembl	74_37	-1	known	silent	c.3519	p.G1173	0.934	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM2	HGNC	ENSG00000090975				68	0	0	52	21	28.7671
CDK2AP1	0	genome.wustl.edu	37	12	123749783	123749783	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	123749783	123749783	C	T	SNP	CDK2AP1	ENST00000261692	human	ensembl	74_37	-1	known	silent	c.240	p.T80	0.127	pfam_Cyclin-dep_kinase2-assoc_pr,pirsf_CDK2-associated_2	pfam_Cyclin-dep_kinase2-assoc_pr,pirsf_CDK2-associated_2	-	no_errors	CDK2AP1	HGNC	ENSG00000111328				244	0	0	204	14	6.42202
DNAH10	0	genome.wustl.edu	37	12	124270304	124270304	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	124270304	124270304	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	silent	c.1059	p.H353	0.050	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				115	0	0	64	10	13.5135
GPR19	0	genome.wustl.edu	37	12	12815196	12815196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	12815196	12815196	C	T	SNP	GPR19	ENST00000332427	human	ensembl	74_37	-1	known	missense	c.187	p.G63R	0.993	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR19	HGNC	ENSG00000183150				121	0	0	92	8	8
GPR133	0	genome.wustl.edu	37	12	131471729	131471729	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	131471729	131471729	A	G	SNP	GPR133	ENST00000261654	human	ensembl	74_37	+1	known	missense	c.580	p.S194G	0.000	superfamily_ConA-like_lec_gl_sf	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452				124	0	0	87	8	8.42105
MMP17	0	genome.wustl.edu	37	12	132325164	132325164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	132325164	132325164	C	T	SNP	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	missense	c.469	p.R157C	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598				109	0	0	90	26	22.4138
KIAA1467	0	genome.wustl.edu	37	12	13232857	13232857	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	13232857	13232857	C	T	SNP	KIAA1467	ENST00000197268	human	ensembl	74_37	+1	known	nonsense	c.1777	p.Q593*	0.796	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	KIAA1467	HGNC	ENSG00000084444				50	0	0	38	17	30.9091
GOLT1B	0	genome.wustl.edu	37	12	21665245	21665245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	21665245	21665245	G	A	SNP	GOLT1B	ENST00000229314	human	ensembl	74_37	+1	known	missense	c.313	p.V105I	1.000	pfam_Vesicle_transpt_Got1/SFT2	pfam_Vesicle_transpt_Got1/SFT2	-	no_errors	GOLT1B	HGNC	ENSG00000111711				101	0	0	106	6	5.35714
SOX5	0	genome.wustl.edu	37	12	23999035	23999035	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	23999035	23999035	G	A	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	silent	c.363	p.G121	0.966	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				114	0	0	76	31	28.972
KRAS	0	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	25398284	25398284	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.35	p.G12D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				33	0	0	25	8	24.2424
ITPR2	0	genome.wustl.edu	37	12	26551954	26551954	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	26551954	26551954	T	C	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	silent	c.7551	p.R2517	0.991	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				19	0	0	14	9	39.1304
CACNA1C	0	genome.wustl.edu	37	12	2786373	2786373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	2786373	2786373	G	A	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.4942	p.A1648T	0.989	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				23	0	0	15	4	21.0526
IPO8	0	genome.wustl.edu	37	12	30792613	30792613	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	30792613	30792613	A	G	SNP	IPO8	ENST00000256079	human	ensembl	74_37	-1	known	silent	c.2325	p.T775	0.271	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704				152	0	0	143	8	5.29801
IPO8	0	genome.wustl.edu	37	12	30826944	30826944	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	30826944	30826944	A	G	SNP	IPO8	ENST00000256079	human	ensembl	74_37	-1	known	missense	c.889	p.Y297H	1.000	pfam_Cse1,superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704				57	0	0	48	5	9.43396
PRMT8	0	genome.wustl.edu	37	12	3701425	3701425	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	3701425	3701425	G	A	SNP	PRMT8	ENST00000382622	human	ensembl	74_37	+1	known	silent	c.1008	p.K336	1.000	pfam_Arg_MeTrfase	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT8	HGNC	ENSG00000111218				247	1	0.403226	203	29	12.5
PCED1B	0	genome.wustl.edu	37	12	47629940	47629940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	47629940	47629940	C	T	SNP	PCED1B	ENST00000432328	human	ensembl	74_37	+1	known	missense	c.1094	p.A365V	0.000	NULL	NULL	-	no_errors	PCED1B	HGNC	ENSG00000179715				157	0	0	87	27	23.6842
ZNF641	0	genome.wustl.edu	37	12	48737243	48737243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	48737243	48737243	G	A	SNP	ZNF641	ENST00000301042	human	ensembl	74_37	-1	known	missense	c.830	p.S277F	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF641	HGNC	ENSG00000167528				41	0	0	55	6	9.83607
ADCY6	0	genome.wustl.edu	37	12	49165623	49165623	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	49165623	49165623	G	A	SNP	ADCY6	ENST00000307885	human	ensembl	74_37	-1	known	missense	c.2921	p.S974L	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY6	HGNC	ENSG00000174233				88	0	0	50	28	35.8974
DDX23	0	genome.wustl.edu	37	12	49226331	49226331	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	49226331	49226331	G	T	SNP	DDX23	ENST00000308025	human	ensembl	74_37	-1	known	missense	c.1829	p.P610H	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX23	HGNC	ENSG00000174243				41	0	0	35	7	16.6667
WNT10B	0	genome.wustl.edu	37	12	49361903	49361903	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	49361903	49361903	G	A	SNP	WNT10B	ENST00000301061	human	ensembl	74_37	-1	known	silent	c.537	p.S179	1.000	pfam_Wnt,smart_Wnt,prints_Wnt10	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10B	HGNC	ENSG00000169884				42	0	0	34	4	10.5263
KMT2D	0	genome.wustl.edu	37	12	49425776	49425776	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	49425776	49425776	G	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.12712	p.R4238C	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				24	0	0	19	11	36.6667
KCNH3	0	genome.wustl.edu	37	12	49948156	49948156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	49948156	49948156	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.1955	p.R652Q	0.029	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519				174	0	0	125	13	9.42029
GPD1	0	genome.wustl.edu	37	12	50498451	50498451	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	50498451	50498451	G	T	SNP	GPD1	ENST00000301149	human	ensembl	74_37	+1	known	nonsense	c.136	p.G46*	0.574	pfam_G3P_DH_NAD-dep_N,pirsf_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	pfam_G3P_DH_NAD-dep_N,pfam_G3P_DH_NAD-dep_C,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	-	no_errors	GPD1	HGNC	ENSG00000167588				157	0	0	139	12	7.94702
LETMD1	0	genome.wustl.edu	37	12	51450008	51450008	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	51450008	51450008	C	T	SNP	LETMD1	ENST00000262055	human	ensembl	74_37	+1	known	nonsense	c.742	p.Q248*	0.281	pfam_LETM1	pfam_LETM1	-	no_errors	LETMD1	HGNC	ENSG00000050426				118	0	0	121	11	8.33333
CSRNP2	0	genome.wustl.edu	37	12	51461489	51461489	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	51461489	51461489	C	T	SNP	CSRNP2	ENST00000228515	human	ensembl	74_37	-1	known	silent	c.675	p.A225	0.008	prints_Cys/Ser-rich_nuc_prot	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP2	HGNC	ENSG00000110925				141	0	0	87	27	23.6842
CSRNP2	0	genome.wustl.edu	37	12	51470194	51470194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	51470194	51470194	G	A	SNP	CSRNP2	ENST00000228515	human	ensembl	74_37	-1	known	missense	c.151	p.P51S	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP2	HGNC	ENSG00000110925				76	0	0	61	7	10.2941
KCNA5	0	genome.wustl.edu	37	12	5154886	5154886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	5154886	5154886	C	T	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	missense	c.1573	p.R525W	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				64	0	0	34	10	22.7273
DAZAP2	0	genome.wustl.edu	37	12	51634184	51634184	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	51634184	51634184	C	A	SNP	DAZAP2	ENST00000549555	human	ensembl	74_37	+1	known	missense	c.71	p.P24H	1.000	NULL	pfam_DAZ_assoc-2	-	no_errors	DAZAP2	HGNC	ENSG00000183283				110	1	0.900901	64	25	28.0899
ACVR1B	0	genome.wustl.edu	37	12	52377793	52377793	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	52377793	52377793	C	A	SNP	ACVR1B	ENST00000257963	human	ensembl	74_37	+1	known	silent	c.822	p.T274	0.986	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503				45	0	0	56	4	6.66667
KRT80	0	genome.wustl.edu	37	12	52567501	52567501	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	52567501	52567501	G	A	SNP	KRT80	ENST00000394815	human	ensembl	74_37	-1	known	silent	c.714	p.V238	0.967	pfam_IF,prints_Keratin_I	pfam_IF,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT80	HGNC	ENSG00000167767				103	0	0	57	19	25
KRT6B	0	genome.wustl.edu	37	12	52845641	52845641	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	52845641	52845641	C	A	SNP	KRT6B	ENST00000252252	human	ensembl	74_37	-1	known	silent	c.222	p.G74	0.920	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6B	HGNC	ENSG00000185479				38	0	0	20	16	44.4444
KRT6C	0	genome.wustl.edu	37	12	52867410	52867410	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	52867410	52867410	C	T	SNP	KRT6C	ENST00000252250	human	ensembl	74_37	-1	known	missense	c.112	p.V38M	0.953	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6C	HGNC	ENSG00000170465				78	0	0	53	18	25.3521
KRT79	0	genome.wustl.edu	37	12	53217775	53217775	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	53217775	53217775	C	G	SNP	KRT79	ENST00000330553	human	ensembl	74_37	-1	known	missense	c.1042	p.A348P	1.000	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_STAT_TF_coiled-coil,prints_Keratin_II	-	no_errors	KRT79	HGNC	ENSG00000185640				34	0	0	53	3	5.35714
TENC1	0	genome.wustl.edu	37	12	53457555	53457555	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	53457555	53457555	G	A	SNP	TENC1	ENST00000314276	human	ensembl	74_37	+1	known	silent	c.4149	p.P1383	0.636	pfam_PTB,smart_PTB/PI_dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077				209	0	0	138	42	23.3333
SOAT2	0	genome.wustl.edu	37	12	53517580	53517580	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	53517580	53517580	C	T	SNP	SOAT2	ENST00000301466	human	ensembl	74_37	+1	known	silent	c.1441	p.L481	0.991	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	SOAT2	HGNC	ENSG00000167780				113	0	0	84	17	16.8317
ESPL1	0	genome.wustl.edu	37	12	53686104	53686104	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	53686104	53686104	A	C	SNP	ESPL1	ENST00000257934	human	ensembl	74_37	+1	known	missense	c.5839	p.S1947R	0.003	pfam_Peptidase_C50	pfam_Peptidase_C50,superfamily_DsrEFH-like	-	no_errors	ESPL1	HGNC	ENSG00000135476				113	0	0	81	29	26.3636
HNRNPA1	0	genome.wustl.edu	37	12	54676031	54676031	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	54676031	54676031	G	T	SNP	HNRNPA1	ENST00000340913	human	ensembl	74_37	+1	known	missense	c.437	p.R146M	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA1	HGNC	ENSG00000135486				58	0	0	46	21	31.3433
NCKAP1L	0	genome.wustl.edu	37	12	54930016	54930016	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	54930016	54930016	C	T	SNP	NCKAP1L	ENST00000293373	human	ensembl	74_37	+1	known	silent	c.3060	p.S1020	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338				38	0	0	40	5	11.1111
SUOX	0	genome.wustl.edu	37	12	56397718	56397718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	56397718	56397718	G	A	SNP	SUOX	ENST00000266971	human	ensembl	74_37	+1	known	missense	c.545	p.R182H	1.000	superfamily_OxRdtase_Mopterin-bd_dom,superfamily_Cyt_B5-like_heme/steroid-bd	pfam_OxRdtase_Mopterin-bd_dom,pfam_MoCF_OxRdtse_dimer,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_OxRdtase_Mopterin-bd_dom,superfamily_Ig_E-set,superfamily_Cyt_B5-like_heme/steroid-bd,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Mopterin_OxRdtase_euk,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	SUOX	HGNC	ENSG00000139531				40	0	0	29	6	17.1429
SMARCC2	0	genome.wustl.edu	37	12	56579984	56579984	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	56579984	56579984	C	A	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	missense	c.272	p.C91F	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				116	0	0	69	24	25.8065
CS	0	genome.wustl.edu	37	12	56669893	56669893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	56669893	56669893	G	A	SNP	CS	ENST00000546891	human	ensembl	74_37	-1	known	missense	c.515	p.A172V	1.000	NULL	pfam_Citrate_synthase-like,superfamily_Citrate_synthase-like_core	-	no_errors	CS	HGNC	ENSG00000062485				71	0	0	52	16	23.5294
PAN2	0	genome.wustl.edu	37	12	56716264	56716264	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	56716264	56716264	G	A	SNP	PAN2	ENST00000425394	human	ensembl	74_37	-1	known	silent	c.2652	p.G884	0.015	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19/C67,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19/C67	-	no_errors	PAN2	HGNC	ENSG00000135473				61	0	0	56	13	18.8406
PAN2	0	genome.wustl.edu	37	12	56718366	56718366	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	56718366	56718366	T	C	SNP	PAN2	ENST00000425394	human	ensembl	74_37	-1	known	missense	c.1727	p.Q576R	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19/C67,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19/C67	-	no_errors	PAN2	HGNC	ENSG00000135473				85	0	0	93	5	5.10204
NACA	0	genome.wustl.edu	37	12	57107321	57107321	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	57107321	57107321	C	T	SNP	NACA	ENST00000454682	human	ensembl	74_37	-1	known	silent	c.5970	p.K1990	1.000	pfam_Nas_poly-pep-assoc_cplx_dom,pfscan_Nas_poly-pep-assoc_cplx_dom	pfam_Nas_poly-pep-assoc_cplx_dom,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACA	HGNC	ENSG00000196531				93	0	0	123	11	8.20896
KIF5A	0	genome.wustl.edu	37	12	57963455	57963455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	57963455	57963455	G	A	SNP	KIF5A	ENST00000455537	human	ensembl	74_37	+1	known	missense	c.1106	p.R369Q	1.000	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5A	HGNC	ENSG00000155980				43	0	0	26	12	31.5789
MARCH9	0	genome.wustl.edu	37	12	58152041	58152041	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	58152041	58152041	A	T	SNP	MARCH9	ENST00000266643	human	ensembl	74_37	+1	known	missense	c.664	p.I222F	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH9	HGNC	ENSG00000139266				45	0	0	54	6	10
HELB	0	genome.wustl.edu	37	12	66696454	66696454	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	66696454	66696454	A	G	SNP	HELB	ENST00000247815	human	ensembl	74_37	+1	known	missense	c.71	p.E24G	0.024	NULL	superfamily_P-loop_NTPase	-	no_errors	HELB	HGNC	ENSG00000127311				39	0	0	42	3	6.66667
CHD4	0	genome.wustl.edu	37	12	6707121	6707121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	6707121	6707121	G	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.1831	p.R611C	1.000	superfamily_Chromodomain-like	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				142	0	0	105	50	32.2581
GLIPR1	0	genome.wustl.edu	37	12	75884201	75884201	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	75884201	75884201	A	G	SNP	GLIPR1	ENST00000266659	human	ensembl	74_37	+1	known	missense	c.436	p.S146G	0.959	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1	HGNC	ENSG00000139278				50	0	0	28	9	24.3243
SLC2A14	0	genome.wustl.edu	37	12	7970451	7970451	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	7970451	7970451	G	A	SNP	SLC2A14	ENST00000396589	human	ensembl	74_37	-1	known	silent	c.1320	p.V440	0.996	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A14	HGNC	ENSG00000173262				105	0	0	63	26	29.2135
MYF5	0	genome.wustl.edu	37	12	81111208	81111208	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	81111208	81111208	G	A	SNP	MYF5	ENST00000228644	human	ensembl	74_37	+1	known	silent	c.366	p.E122	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_Basic,pfam_Myf5,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYF5	HGNC	ENSG00000111049				104	0	0	100	11	9.90991
PPFIA2	0	genome.wustl.edu	37	12	81741514	81741514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	81741514	81741514	C	T	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.2030	p.R677H	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220				91	0	0	71	8	10.1266
EEA1	0	genome.wustl.edu	37	12	93192691	93192691	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	93192691	93192691	G	A	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	missense	c.2944	p.L982F	0.006	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189				75	0	0	81	10	10.989
CCDC41	0	genome.wustl.edu	37	12	94806263	94806263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	94806263	94806263	C	T	SNP	CCDC41	ENST00000339839	human	ensembl	74_37	-1	known	missense	c.4	p.V2I	0.997	NULL	NULL	-	no_errors	CCDC41	HGNC	ENSG00000173588				71	0	0	56	11	16.4179
FGD6	0	genome.wustl.edu	37	12	95604120	95604120	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	95604120	95604120	T	C	SNP	FGD6	ENST00000343958	human	ensembl	74_37	-1	known	missense	c.940	p.T314A	0.998	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263				110	0	0	103	9	8.03571
CDK17	0	genome.wustl.edu	37	12	96674556	96674556	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	96674556	96674556	G	A	SNP	CDK17	ENST00000543119	human	ensembl	74_37	-1	known	nonsense	c.1564	p.R522*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK17	HGNC	ENSG00000059758				42	0	0	29	13	30.9524
C12orf55	0	genome.wustl.edu	37	12	97043775	97043775	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	97043775	97043775	A	C	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	missense	c.4797	p.K1599N	0.845	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				79	0	0	85	12	12.3711
TMCO3	0	genome.wustl.edu	37	13	114152698	114152698	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	114152698	114152698	T	C	SNP	TMCO3	ENST00000434316	human	ensembl	74_37	+1	known	silent	c.486	p.H162	1.000	NULL	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403				51	0	0	54	5	8.47458
MICU2	0	genome.wustl.edu	37	13	22084194	22084194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	22084194	22084194	C	T	SNP	MICU2	ENST00000382374	human	ensembl	74_37	-1	known	missense	c.710	p.R237H	0.077	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU2	HGNC	ENSG00000165487				48	0	0	39	13	25
SACS	0	genome.wustl.edu	37	13	23905259	23905259	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	23905259	23905259	A	G	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	silent	c.12756	p.S4252	0.981	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				35	0	0	43	10	18.8679
SACS	0	genome.wustl.edu	37	13	23928962	23928962	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	23928962	23928962	A	C	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.1789	p.S597A	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				75	0	0	60	5	7.69231
PARP4	0	genome.wustl.edu	37	13	25067820	25067820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	25067820	25067820	C	T	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	missense	c.793	p.D265N	0.942	superfamily_Poly(ADP-ribose)pol_reg_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				38	0	0	57	6	9.52381
NUPL1	0	genome.wustl.edu	37	13	25905705	25905705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	25905705	25905705	G	A	SNP	NUPL1	ENST00000463407	human	ensembl	74_37	+1	known	missense	c.1444	p.A482T	1.000	NULL	NULL	-	no_errors	NUPL1	HGNC	ENSG00000139496				18	0	0	19	9	32.1429
WASF3	0	genome.wustl.edu	37	13	27257105	27257105	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	27257105	27257105	C	T	SNP	WASF3	ENST00000335327	human	ensembl	74_37	+1	known	nonsense	c.1345	p.R449*	0.991	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF3	HGNC	ENSG00000132970				116	0	0	55	21	27.6316
NBEA	0	genome.wustl.edu	37	13	35733851	35733851	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	35733851	35733851	T	C	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	silent	c.3543	p.S1181	0.935	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				30	0	0	20	8	28.5714
FREM2	0	genome.wustl.edu	37	13	39261570	39261570	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	39261570	39261570	T	G	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.89	p.L30R	0.013	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				16	0	0	11	3	21.4286
MTRF1	0	genome.wustl.edu	37	13	41800599	41800599	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	41800599	41800599	T	G	SNP	MTRF1	ENST00000430347	human	ensembl	74_37	-1	known	missense	c.1133	p.K378T	0.003	pfam_Pep_chain_release_fac_I_II	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1	HGNC	ENSG00000120662				71	0	0	52	30	36.5854
COG3	0	genome.wustl.edu	37	13	46083848	46083848	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	46083848	46083848	C	A	SNP	COG3	ENST00000349995	human	ensembl	74_37	+1	known	missense	c.1616	p.P539H	1.000	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152				234	0	0	180	63	25.9259
PHF11	0	genome.wustl.edu	37	13	50095067	50095067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	50095067	50095067	G	A	SNP	PHF11	ENST00000378319	human	ensembl	74_37	+1	known	missense	c.496	p.A166T	0.000	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF11	HGNC	ENSG00000136147				49	0	0	46	5	9.80392
HNRNPA1L2	0	genome.wustl.edu	37	13	53216743	53216743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	53216743	53216743	C	T	SNP	HNRNPA1L2	ENST00000342657	human	ensembl	74_37	+1	known	missense	c.116	p.T39M	0.976	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_HnRNPA1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA1L2	HGNC	ENSG00000139675				30	0	0	20	7	25.9259
PCDH17	0	genome.wustl.edu	37	13	58207949	58207949	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	58207949	58207949	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.1269	p.T423	0.028	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				33	0	0	16	11	40.7407
PCDH17	0	genome.wustl.edu	37	13	58208794	58208794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	58208794	58208794	C	T	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.2114	p.S705L	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				101	0	0	46	14	23.3333
KLF5	0	genome.wustl.edu	37	13	73636260	73636260	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	73636260	73636260	A	G	SNP	KLF5	ENST00000377687	human	ensembl	74_37	+1	known	missense	c.523	p.T175A	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF5	HGNC	ENSG00000102554				101	0	0	103	12	10.4348
TBC1D4	0	genome.wustl.edu	37	13	75873705	75873705	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	75873705	75873705	T	A	SNP	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	missense	c.2917	p.T973S	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				38	0	0	27	16	37.2093
TBC1D4	0	genome.wustl.edu	37	13	75901921	75901921	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	75901921	75901921	A	G	SNP	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	silent	c.1773	p.S591	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				148	0	0	95	44	31.6547
SLITRK1	0	genome.wustl.edu	37	13	84454847	84454847	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	84454847	84454847	G	A	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	nonsense	c.796	p.R266*	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				63	0	0	54	5	8.47458
DNAJC3	0	genome.wustl.edu	37	13	96375615	96375615	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	96375615	96375615	A	G	SNP	DNAJC3	ENST00000602402	human	ensembl	74_37	+1	known	missense	c.313	p.T105A	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_DnaJ_domain,smart_TPR_repeat,smart_DnaJ_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC3	HGNC	ENSG00000102580				104	0	0	115	12	9.44882
RNF113B	0	genome.wustl.edu	37	13	98828582	98828582	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	98828582	98828582	G	A	SNP	RNF113B	ENST00000267291	human	ensembl	74_37	-1	known	silent	c.909	p.P303	0.937	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113B	HGNC	ENSG00000139797				126	0	0	80	32	28.5714
DOCK9	0	genome.wustl.edu	37	13	99567684	99567684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	99567684	99567684	C	T	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	missense	c.794	p.S265N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				35	0	0	37	3	7.5
WARS	0	genome.wustl.edu	37	14	100801346	100801346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	100801346	100801346	C	T	SNP	WARS	ENST00000355338	human	ensembl	74_37	-1	known	missense	c.1282	p.G428S	0.998	pfam_aa-tRNA-synth_Ic,tigrfam_Trp-tRNA-ligase	pfam_aa-tRNA-synth_Ic,pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS	HGNC	ENSG00000140105				54	0	0	55	8	12.6984
SNORD113-2	0	genome.wustl.edu	37	14	101393683	101393683	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	101393683	101393683	C	T	SNP	SNORD113-2	ENST00000391082	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD113-2	HGNC	ENSG00000212384				35	0	0	50	4	7.40741
SNORD114-16	0	genome.wustl.edu	37	14	101439979	101439979	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	101439979	101439979	G	A	SNP	SNORD114-16	ENST00000363044	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	SNORD114-16	HGNC	ENSG00000199914				91	0	0	71	8	10.1266
PPP2R5C	0	genome.wustl.edu	37	14	102359431	102359431	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	102359431	102359431	G	A	SNP	PPP2R5C	ENST00000422945	human	ensembl	74_37	+1	known	missense	c.877	p.V293I	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5C	HGNC	ENSG00000078304				76	0	0	46	4	8
WDR20	0	genome.wustl.edu	37	14	102676020	102676020	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	102676020	102676020	C	A	SNP	WDR20	ENST00000454394	human	ensembl	74_37	+1	known	missense	c.1606	p.P536T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR20	HGNC	ENSG00000140153				89	0	0	91	7	7.14286
CEP170B	0	genome.wustl.edu	37	14	105350360	105350360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	105350360	105350360	G	A	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	missense	c.1247	p.R416Q	0.983	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814				12	0	0	18	5	21.7391
JAG2	0	genome.wustl.edu	37	14	105622217	105622217	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	105622217	105622217	G	A	SNP	JAG2	ENST00000331782	human	ensembl	74_37	-1	known	silent	c.585	p.R195	0.183	pfam_DSL,smart_DSL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	JAG2	HGNC	ENSG00000184916				19	0	0	16	5	23.8095
RNASE9	0	genome.wustl.edu	37	14	21024951	21024951	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	21024951	21024951	T	C	SNP	RNASE9	ENST00000338904	human	ensembl	74_37	-1	known	missense	c.278	p.Y93C	0.014	pfam_RNaseA_domain,superfamily_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain	-	no_errors	RNASE9	HGNC	ENSG00000188655				110	0	0	144	14	8.86076
RNASE11	0	genome.wustl.edu	37	14	21052427	21052427	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	21052427	21052427	A	G	SNP	RNASE11	ENST00000398008	human	ensembl	74_37	-1	known	silent	c.207	p.D69	0.002	NULL	pfam_RNaseA_domain,superfamily_RNaseA_domain	-	no_errors	RNASE11	HGNC	ENSG00000173464				232	0	0	214	30	12.2951
RPGRIP1	0	genome.wustl.edu	37	14	21769187	21769187	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	21769187	21769187	C	A	SNP	RPGRIP1	ENST00000206660	human	ensembl	74_37	+1	known	missense	c.281	p.A94E	0.000	NULL	pfam_DUF3250,superfamily_C2_dom	-	no_errors	RPGRIP1	HGNC	ENSG00000092200				48	0	0	37	4	9.7561
RAB2B	0	genome.wustl.edu	37	14	21944741	21944741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	21944741	21944741	G	A	SNP	RAB2B	ENST00000397762	human	ensembl	74_37	-1	known	missense	c.64	p.L22F	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB2B	HGNC	ENSG00000129472				130	0	0	81	35	30.1724
TOX4	0	genome.wustl.edu	37	14	21955822	21955822	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	21955822	21955822	C	T	SNP	TOX4	ENST00000262709	human	ensembl	74_37	+1	known	silent	c.288	p.G96	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX4	HGNC	ENSG00000092203				85	0	0	63	11	14.8649
LRP10	0	genome.wustl.edu	37	14	23345962	23345962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	23345962	23345962	G	A	SNP	LRP10	ENST00000359591	human	ensembl	74_37	+1	known	missense	c.1489	p.G497R	0.999	NULL	pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP10	HGNC	ENSG00000197324				93	0	0	81	9	10
CDH24	0	genome.wustl.edu	37	14	23522901	23522901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	23522901	23522901	G	A	SNP	CDH24	ENST00000267383	human	ensembl	74_37	-1	known	missense	c.1030	p.L344F	0.985	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880				30	0	0	32	4	11.1111
SLC22A17	0	genome.wustl.edu	37	14	23818480	23818480	+	Splice_Site	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	23818480	23818480	C	T	SNP	SLC22A17	ENST00000206544	human	ensembl	74_37	-1	known	splice_site	c.526+1	e3+1	1.000	-	-	-	no_errors	SLC22A17	HGNC	ENSG00000092096				69	0	0	56	20	26.3158
MYH6	0	genome.wustl.edu	37	14	23871975	23871975	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	23871975	23871975	G	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	silent	c.933	p.Y311	0.833	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				77	0	0	43	15	25.8621
MYH7	0	genome.wustl.edu	37	14	23898464	23898464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	23898464	23898464	C	T	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.1231	p.V411I	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				169	0	0	125	48	27.7457
LRRC16B	0	genome.wustl.edu	37	14	24523312	24523312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	24523312	24523312	C	T	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	missense	c.151	p.R51C	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				76	0	0	53	11	17.1875
LRRC16B	0	genome.wustl.edu	37	14	24532697	24532697	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	24532697	24532697	G	T	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	missense	c.2934	p.R978S	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				71	0	0	73	7	8.75
LRRC16B	0	genome.wustl.edu	37	14	24537831	24537831	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	24537831	24537831	A	G	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	missense	c.3721	p.S1241G	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				91	0	0	82	10	10.8696
ADCY4	0	genome.wustl.edu	37	14	24791428	24791428	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	24791428	24791428	A	G	SNP	ADCY4	ENST00000310677	human	ensembl	74_37	-1	known	silent	c.2430	p.N810	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467				59	0	0	70	10	12.5
FOXG1	0	genome.wustl.edu	37	14	29237305	29237305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	29237305	29237305	C	T	SNP	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	missense	c.820	p.R274W	1.000	pfam_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165				39	0	0	23	12	34.2857
RALGAPA1	0	genome.wustl.edu	37	14	36147154	36147154	+	Splice_Site	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	36147154	36147154	G	A	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	splice_site	c.3247+2	e22+2	1.000	-	-	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				61	0	0	54	20	27.027
BRMS1L	0	genome.wustl.edu	37	14	36302197	36302197	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	36302197	36302197	C	T	SNP	BRMS1L	ENST00000216807	human	ensembl	74_37	+1	known	nonsense	c.247	p.R83*	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	BRMS1L	HGNC	ENSG00000100916				43	0	0	43	7	14
DPPA3P2	0	genome.wustl.edu	37	14	36840675	36840675	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	36840675	36840675	C	T	SNP	DPPA3P2	ENST00000557188	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	DPPA3P2	HGNC	ENSG00000188831				27	0	0	22	8	26.6667
PAX9	0	genome.wustl.edu	37	14	37132240	37132240	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	37132240	37132240	T	C	SNP	PAX9	ENST00000361487	human	ensembl	74_37	+1	known	missense	c.143	p.V48A	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX9	HGNC	ENSG00000198807				64	0	0	39	6	13.3333
LRFN5	0	genome.wustl.edu	37	14	42356964	42356964	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	42356964	42356964	A	G	SNP	LRFN5	ENST00000298119	human	ensembl	74_37	+1	known	missense	c.1136	p.H379R	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN5	HGNC	ENSG00000165379				67	0	0	77	9	10.4651
KLHL28	0	genome.wustl.edu	37	14	45414264	45414264	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	45414264	45414264	C	G	SNP	KLHL28	ENST00000396128	human	ensembl	74_37	-1	known	missense	c.868	p.G290R	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454				135	0	0	108	7	6.08696
FANCM	0	genome.wustl.edu	37	14	45645243	45645243	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	45645243	45645243	C	T	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.3286	p.P1096S	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				51	0	0	49	5	9.25926
RPL10L	0	genome.wustl.edu	37	14	47120898	47120898	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	47120898	47120898	G	C	SNP	RPL10L	ENST00000298283	human	ensembl	74_37	-1	known	missense	c.42	p.N14K	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10L	HGNC	ENSG00000165496				97	0	0	67	28	29.4737
MDGA2	0	genome.wustl.edu	37	14	47342767	47342767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	47342767	47342767	C	T	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	missense	c.2621	p.R874Q	0.983	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				82	0	0	76	8	9.52381
TRIM9	0	genome.wustl.edu	37	14	51561493	51561493	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	51561493	51561493	G	A	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	silent	c.165	p.S55	0.982	smart_Znf_RING	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				31	0	0	16	4	20
GNG2	0	genome.wustl.edu	37	14	52417379	52417379	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	52417379	52417379	G	T	SNP	GNG2	ENST00000557376	human	ensembl	74_37	+1	putative	missense	c.100	p.D34Y	0.073	NULL	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG2	HGNC	ENSG00000186469				47	0	0	41	14	25.4545
WDHD1	0	genome.wustl.edu	37	14	55429711	55429711	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	55429711	55429711	C	T	SNP	WDHD1	ENST00000360586	human	ensembl	74_37	-1	known	silent	c.2490	p.E830	0.929	NULL	pfam_WD40_repeat,pfam_DUF3639,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,superfamily_HMG_box_dom,smart_WD40_repeat,smart_HMG_box_dom,pfscan_HMG_box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDHD1	HGNC	ENSG00000198554				15	0	0	15	4	21.0526
PSMA3	0	genome.wustl.edu	37	14	58734211	58734211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	58734211	58734211	G	A	SNP	PSMA3	ENST00000216455	human	ensembl	74_37	+1	known	missense	c.563	p.R188H	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA3	HGNC	ENSG00000100567				52	0	0	62	11	15.0685
TOMM20L	0	genome.wustl.edu	37	14	58863027	58863027	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	58863027	58863027	G	A	SNP	TOMM20L	ENST00000360945	human	ensembl	74_37	+1	known	missense	c.148	p.E50K	0.009	pfam_MAS20_rcpt-related,pirsf_MAS20_rcpt-related,prints_MAS20_rcpt_metazoan	pfam_MAS20_rcpt-related,superfamily_Tom20_dom,pirsf_MAS20_rcpt-related,prints_MAS20_rcpt_metazoan,prints_MAS20_rcpt-related	-	no_errors	TOMM20L	HGNC	ENSG00000196860				47	0	0	39	4	9.30233
WDR89	0	genome.wustl.edu	37	14	64066595	64066595	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	64066595	64066595	C	T	SNP	WDR89	ENST00000267522	human	ensembl	74_37	-1	known	silent	c.66	p.E22	1.000	smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR89	HGNC	ENSG00000140006				93	0	0	66	14	17.5
SYNE2	0	genome.wustl.edu	37	14	64408821	64408821	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	64408821	64408821	T	G	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.368	p.I123S	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				64	0	0	62	7	10.1449
HSPA2	0	genome.wustl.edu	37	14	65008911	65008911	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	65008911	65008911	C	T	SNP	HSPA2	ENST00000247207	human	ensembl	74_37	+1	known	silent	c.1344	p.G448	0.999	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803				99	0	0	102	7	6.42202
TMEM229B	0	genome.wustl.edu	37	14	67940262	67940262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	67940262	67940262	C	T	SNP	TMEM229B	ENST00000357461	human	ensembl	74_37	-1	known	missense	c.379	p.G127R	1.000	pfam_DUF1113_TMEM229	pfam_DUF1113_TMEM229	-	no_errors	TMEM229B	HGNC	ENSG00000198133				22	0	0	21	2	8.69565
SIPA1L1	0	genome.wustl.edu	37	14	72152299	72152299	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	72152299	72152299	G	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.3325	p.A1109T	0.993	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				59	0	0	63	6	8.69565
DCAF4	0	genome.wustl.edu	37	14	73409783	73409783	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	73409783	73409783	C	T	SNP	DCAF4	ENST00000358377	human	ensembl	74_37	+1	known	silent	c.513	p.S171	0.133	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4	HGNC	ENSG00000119599				93	0	0	58	15	20.5479
DLST	0	genome.wustl.edu	37	14	75361105	75361105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	75361105	75361105	G	A	SNP	DLST	ENST00000334220	human	ensembl	74_37	+1	known	missense	c.763	p.D255N	1.000	pfam_2-oxoacid_DH_actylTfrase,tigrfam_SucB	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl,tigrfam_SucB	-	no_errors	DLST	HGNC	ENSG00000119689				160	0	0	134	12	8.21918
ISM2	0	genome.wustl.edu	37	14	77942332	77942332	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	77942332	77942332	G	T	SNP	ISM2	ENST00000342219	human	ensembl	74_37	-1	known	missense	c.1322	p.P441H	0.015	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM2	HGNC	ENSG00000100593				44	0	0	54	5	8.47458
NRXN3	0	genome.wustl.edu	37	14	80328033	80328033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	80328033	80328033	G	A	SNP	NRXN3	ENST00000335750	human	ensembl	74_37	+1	known	missense	c.2912	p.R971Q	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				52	0	0	39	14	26.4151
PTPN21	0	genome.wustl.edu	37	14	88946663	88946663	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	88946663	88946663	T	C	SNP	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	missense	c.1112	p.Y371C	1.000	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778				75	0	0	72	6	7.69231
FOXN3	0	genome.wustl.edu	37	14	89878421	89878421	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	89878421	89878421	G	A	SNP	FOXN3	ENST00000261302	human	ensembl	74_37	-1	known	missense	c.400	p.R134C	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254				135	0	0	109	15	12.0968
CCDC88C	0	genome.wustl.edu	37	14	91770121	91770121	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	91770121	91770121	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.3559	p.A1187T	0.998	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				23	0	0	14	2	12.5
SMEK1	0	genome.wustl.edu	37	14	91925133	91925133	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	91925133	91925133	T	C	SNP	SMEK1	ENST00000554943	human	ensembl	74_37	-1	known	silent	c.2472	p.P824	0.977	NULL	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796				55	0	0	71	10	12.3457
UNC79	0	genome.wustl.edu	37	14	94103591	94103591	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	94103591	94103591	A	G	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.5929	p.N1977D	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				78	0	0	59	6	9.23077
DICER1	0	genome.wustl.edu	37	14	95562378	95562378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	95562378	95562378	C	T	SNP	DICER1	ENST00000343455	human	ensembl	74_37	-1	known	missense	c.4879	p.A1627T	0.064	NULL	pfam_RNase_III_dom,pfam_PAZ_dom,pfam_Dicer_dimerisation_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_P-loop_NTPase,superfamily_PAZ_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_PAZ_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697				293	0	0	278	34	10.8974
CLMN	0	genome.wustl.edu	37	14	95679626	95679626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	95679626	95679626	C	T	SNP	CLMN	ENST00000298912	human	ensembl	74_37	-1	known	missense	c.538	p.A180T	0.211	superfamily_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959				93	0	0	86	9	9.47368
SETD3	0	genome.wustl.edu	37	14	99872896	99872896	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	99872896	99872896	C	T	SNP	SETD3	ENST00000331768	human	ensembl	74_37	-1	known	missense	c.881	p.R294H	1.000	pfam_SET_dom	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,superfamily_Rubisco_LSMT_subst-bd	-	no_errors	SETD3	HGNC	ENSG00000183576				102	0	0	52	24	31.5789
PCSK6	0	genome.wustl.edu	37	15	101971538	101971538	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	101971538	101971538	A	G	SNP	PCSK6	ENST00000348070	human	ensembl	74_37	-1	known	missense	c.641	p.L214P	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,pfam_PLAC,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,pfscan_PLAC,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK6	HGNC	ENSG00000140479				36	0	0	47	5	9.61538
CYFIP1	0	genome.wustl.edu	37	15	22928165	22928165	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	22928165	22928165	A	G	SNP	CYFIP1	ENST00000313077	human	ensembl	74_37	+1	known	missense	c.244	p.M82V	1.000	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793				219	0	0	127	46	26.5896
MAGEL2	0	genome.wustl.edu	37	15	23889660	23889660	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	23889660	23889660	A	G	SNP	MAGEL2	ENST00000532292	human	ensembl	74_37	-1	known	missense	c.1421	p.L474S	0.161	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585				34	0	0	24	10	29.4118
NDN	0	genome.wustl.edu	37	15	23932112	23932112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	23932112	23932112	C	T	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	missense	c.253	p.A85T	0.005	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636				13	0	0	9	7	43.75
SNORD115-23	0	genome.wustl.edu	37	15	25456987	25456987	+	RNA	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	25456987	25456987	A	G	SNP	SNORD115-23	ENST00000364461	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.936	-	-	-	no_errors	SNORD115-23	HGNC	ENSG00000201331				323	0	0	286	28	8.9172
ATP10A	0	genome.wustl.edu	37	15	25971230	25971230	+	Splice_Site	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	25971230	25971230	C	A	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	splice_site	c.848-1	e5-1	1.000	-	-	-	no_errors	ATP10A	HGNC	ENSG00000206190				75	0	0	55	4	6.77966
GABRA5	0	genome.wustl.edu	37	15	27160004	27160004	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	27160004	27160004	G	A	SNP	GABRA5	ENST00000335625	human	ensembl	74_37	+1	known	silent	c.552	p.A184	0.600	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297				60	0	0	50	3	5.66038
HERC2	0	genome.wustl.edu	37	15	28514464	28514464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	28514464	28514464	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.1376	p.A459V	1.000	superfamily_RCC1/BLIP-II	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				40	0	0	37	10	21.2766
TRPM1	0	genome.wustl.edu	37	15	31332410	31332410	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	31332410	31332410	G	A	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.2278	p.R760W	0.991	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				124	0	0	77	26	25.2427
RYR3	0	genome.wustl.edu	37	15	34123231	34123231	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	34123231	34123231	A	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.11402	p.N3801I	1.000	pfam_RIH_assoc-dom,superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				37	0	0	38	12	24
AVEN	0	genome.wustl.edu	37	15	34168182	34168182	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	34168182	34168182	G	A	SNP	AVEN	ENST00000306730	human	ensembl	74_37	-1	known	nonsense	c.460	p.Q154*	1.000	NULL	NULL	-	no_errors	AVEN	HGNC	ENSG00000169857				37	0	0	36	16	30.7692
AVEN	0	genome.wustl.edu	37	15	34295366	34295366	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	34295366	34295366	A	G	SNP	AVEN	ENST00000306730	human	ensembl	74_37	-1	known	silent	c.312	p.D104	0.240	NULL	NULL	-	no_errors	AVEN	HGNC	ENSG00000169857				35	0	0	23	12	34.2857
ZNF770	0	genome.wustl.edu	37	15	35273567	35273567	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	35273567	35273567	A	G	SNP	ZNF770	ENST00000356321	human	ensembl	74_37	-1	known	missense	c.2069	p.V690A	0.010	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF770	HGNC	ENSG00000198146				18	0	0	19	4	17.3913
MEIS2	0	genome.wustl.edu	37	15	37388529	37388529	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	37388529	37388529	G	A	SNP	MEIS2	ENST00000561208	human	ensembl	74_37	-1	known	silent	c.348	p.S116	0.789	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS2	HGNC	ENSG00000134138				25	0	0	24	5	17.2414
MEIS2	0	genome.wustl.edu	37	15	37390178	37390178	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	37390178	37390178	C	T	SNP	MEIS2	ENST00000561208	human	ensembl	74_37	-1	known	missense	c.235	p.A79T	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS2	HGNC	ENSG00000134138				75	0	0	41	9	18
THBS1	0	genome.wustl.edu	37	15	39881276	39881276	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	39881276	39881276	G	T	SNP	THBS1	ENST00000260356	human	ensembl	74_37	+1	known	missense	c.1762	p.D588Y	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801				98	0	0	73	30	29.1262
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42126983	42126983	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	42126983	42126983	C	G	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	missense	c.110	p.T37S	0.001	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				183	0	0	133	13	8.90411
CDAN1	0	genome.wustl.edu	37	15	43020419	43020419	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	43020419	43020419	C	A	SNP	CDAN1	ENST00000356231	human	ensembl	74_37	-1	known	nonsense	c.2851	p.E951*	0.998	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326				139	0	0	97	11	10.1852
TGM7	0	genome.wustl.edu	37	15	43585733	43585733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	43585733	43585733	C	T	SNP	TGM7	ENST00000452443	human	ensembl	74_37	-1	known	missense	c.107	p.R36H	1.000	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495				107	0	0	50	61	54.955
B2M	0	genome.wustl.edu	37	15	45003812	45003812	+	Splice_Site	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	45003812	45003812	G	A	SNP	B2M	ENST00000544417	human	ensembl	74_37	+1	known	splice_site	c.67+1	e1+1	0.996	-	-	-	no_errors	B2M	HGNC	ENSG00000166710				86	0	0	36	65	64.3564
DUOX2	0	genome.wustl.edu	37	15	45392026	45392026	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	45392026	45392026	T	C	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	silent	c.3249	p.S1083	0.005	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				69	0	0	62	9	12.6761
DMXL2	0	genome.wustl.edu	37	15	51773773	51773773	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	51773773	51773773	G	T	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.5530	p.L1844I	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				40	0	0	24	28	53.8462
FAM214A	0	genome.wustl.edu	37	15	52897418	52897418	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	52897418	52897418	A	G	SNP	FAM214A	ENST00000261844	human	ensembl	74_37	-1	known	missense	c.2372	p.V791A	0.926	NULL	NULL	-	no_errors	FAM214A	HGNC	ENSG00000047346				123	0	0	136	15	9.93377
WDR72	0	genome.wustl.edu	37	15	53994441	53994441	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	53994441	53994441	G	T	SNP	WDR72	ENST00000360509	human	ensembl	74_37	-1	known	missense	c.1459	p.L487M	0.776	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415				118	0	0	139	12	7.94702
ZNF280D	0	genome.wustl.edu	37	15	56959098	56959098	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	56959098	56959098	G	T	SNP	ZNF280D	ENST00000267807	human	ensembl	74_37	-1	known	silent	c.1632	p.L544	0.995	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280D	HGNC	ENSG00000137871				25	0	0	35	3	7.89474
HERC1	0	genome.wustl.edu	37	15	63953190	63953190	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	63953190	63953190	G	A	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	nonsense	c.9205	p.Q3069*	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				74	0	0	68	4	5.55556
RBPMS2	0	genome.wustl.edu	37	15	65040633	65040633	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	65040633	65040633	G	A	SNP	RBPMS2	ENST00000300069	human	ensembl	74_37	-1	known	silent	c.552	p.A184	0.483	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBPMS2	HGNC	ENSG00000166831				71	0	0	62	7	10.1449
SKOR1	0	genome.wustl.edu	37	15	68118326	68118326	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	68118326	68118326	A	G	SNP	SKOR1	ENST00000380035	human	ensembl	74_37	+1	known	missense	c.160	p.S54G	1.000	NULL	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR1	HGNC	ENSG00000188779				46	0	0	45	5	10
ITGA11	0	genome.wustl.edu	37	15	68619011	68619011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	68619011	68619011	C	T	SNP	ITGA11	ENST00000315757	human	ensembl	74_37	-1	known	missense	c.2192	p.R731Q	0.912	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809				11	0	0	3	2	40
UACA	0	genome.wustl.edu	37	15	70960242	70960242	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	70960242	70960242	C	T	SNP	UACA	ENST00000322954	human	ensembl	74_37	-1	known	silent	c.2781	p.E927	0.952	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831				66	0	0	62	10	13.8889
PKM	0	genome.wustl.edu	37	15	72502688	72502688	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	72502688	72502688	G	A	SNP	PKM	ENST00000319622	human	ensembl	74_37	-1	known	silent	c.378	p.G126	1.000	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase-like_insert_dom,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKM	HGNC	ENSG00000067225				198	1	0.502513	227	14	5.80913
ISLR2	0	genome.wustl.edu	37	15	74425583	74425583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	74425583	74425583	C	T	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	missense	c.488	p.A163V	0.090	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				58	0	0	68	5	6.84932
LMAN1L	0	genome.wustl.edu	37	15	75117889	75117889	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	75117889	75117889	C	A	SNP	LMAN1L	ENST00000309664	human	ensembl	74_37	+1	known	silent	c.1524	p.T508	0.000	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	-	no_errors	LMAN1L	HGNC	ENSG00000140506				155	0	0	54	88	61.9718
PTPN9	0	genome.wustl.edu	37	15	75763086	75763086	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	75763086	75763086	T	C	SNP	PTPN9	ENST00000306726	human	ensembl	74_37	-1	known	missense	c.1294	p.T432A	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_CRAL-TRIO_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_CRAL-bd_toc_tran	-	no_errors	PTPN9	HGNC	ENSG00000169410				129	0	0	108	12	10
SNUPN	0	genome.wustl.edu	37	15	75890977	75890977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	75890977	75890977	C	T	SNP	SNUPN	ENST00000371091	human	ensembl	74_37	-1	known	missense	c.931	p.G311R	1.000	pirsf_Snurportin-1	pfam_Snurportin-1_N,pirsf_Snurportin-1,pfscan_Importin-a_IBB	-	no_errors	SNUPN	HGNC	ENSG00000169371				217	1	0.458716	204	14	6.42202
MORF4L1	0	genome.wustl.edu	37	15	79170560	79170560	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	79170560	79170560	C	T	SNP	MORF4L1	ENST00000331268	human	ensembl	74_37	+1	known	nonsense	c.46	p.R16*	1.000	pfam_Tudor-knot,superfamily_Chromodomain-like,pirsf_EAF3/MRG15	pfam_MRG_dom,pfam_Tudor-knot,superfamily_Chromodomain-like,pirsf_EAF3/MRG15	-	no_errors	MORF4L1	HGNC	ENSG00000185787				35	0	0	17	38	69.0909
WHAMM	0	genome.wustl.edu	37	15	83481903	83481903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	83481903	83481903	G	A	SNP	WHAMM	ENST00000286760	human	ensembl	74_37	+1	known	missense	c.658	p.V220I	0.875	NULL	superfamily_tRNA-bd_arm,pfscan_WH2_dom	-	no_errors	WHAMM	HGNC	ENSG00000156232				29	0	0	7	11	61.1111
PDE8A	0	genome.wustl.edu	37	15	85634368	85634368	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	85634368	85634368	G	A	SNP	PDE8A	ENST00000310298	human	ensembl	74_37	+1	known	missense	c.808	p.A270T	1.000	pfam_PAS_fold,pfam_PAS_4,superfamily_PAS,pfscan_PAS,tigrfam_PAS	pfam_PDEase_catalytic_dom,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,superfamily_PAS,superfamily_CheY-like_superfamily,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8A	HGNC	ENSG00000073417				27	0	0	33	9	21.4286
AGBL1	0	genome.wustl.edu	37	15	86813174	86813174	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	86813174	86813174	C	T	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	silent	c.1725	p.N575	0.817	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748				37	0	0	34	7	17.0732
GABARAPL3	0	genome.wustl.edu	37	15	90892168	90892168	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	90892168	90892168	T	C	SNP	GABARAPL3	ENST00000412799	human	ensembl	74_37	-1	known	missense	c.262	p.S88G	1.000	pfam_Atg8_fam,pfam_Atg12	pfam_Atg8_fam,pfam_Atg12	-	no_errors	GABARAPL3	HGNC	ENSG00000238244				34	0	0	34	3	8.10811
SV2B	0	genome.wustl.edu	37	15	91835608	91835608	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	91835608	91835608	C	A	SNP	SV2B	ENST00000330276	human	ensembl	74_37	+1	known	silent	c.1878	p.A626	0.996	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2B	HGNC	ENSG00000185518				81	0	0	25	56	69.1358
CIITA	0	genome.wustl.edu	37	16	11000842	11000842	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	11000842	11000842	T	C	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.1493	p.L498P	1.000	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,prints_MHC_II_transact	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				114	0	0	124	8	6.06061
CIITA	0	genome.wustl.edu	37	16	11000938	11000938	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	11000938	11000938	C	T	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.1589	p.A530V	0.953	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,prints_MHC_II_transact	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				19	0	0	33	4	10.8108
CIITA	0	genome.wustl.edu	37	16	11016335	11016335	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	11016335	11016335	T	C	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.3305	p.V1102A	0.737	NULL	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				45	0	0	33	4	10.8108
CLEC16A	0	genome.wustl.edu	37	16	11118742	11118742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	11118742	11118742	G	A	SNP	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	missense	c.1501	p.V501M	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532				19	0	0	12	3	20
TXNDC11	0	genome.wustl.edu	37	16	11773600	11773600	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	11773600	11773600	G	A	SNP	TXNDC11	ENST00000356957	human	ensembl	74_37	-1	known	silent	c.2409	p.S803	0.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066				70	0	0	62	20	24.3902
ZC3H7A	0	genome.wustl.edu	37	16	11873209	11873209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	11873209	11873209	C	T	SNP	ZC3H7A	ENST00000355758	human	ensembl	74_37	-1	known	missense	c.119	p.R40H	0.001	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299				26	0	0	35	9	20.4545
MKL2	0	genome.wustl.edu	37	16	14334332	14334332	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	14334332	14334332	C	T	SNP	MKL2	ENST00000341243	human	ensembl	74_37	+1	known	missense	c.1037	p.A346V	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL2	HGNC	ENSG00000186260				176	0	0	139	12	7.94702
BFAR	0	genome.wustl.edu	37	16	14742310	14742310	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	14742310	14742310	A	G	SNP	BFAR	ENST00000261658	human	ensembl	74_37	+1	known	missense	c.329	p.N110S	0.104	NULL	pfam_SAM_type1,pfam_Znf_C3HC4_RING-type,pfam_SAM_2,superfamily_SAM/pointed,smart_Znf_RING,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	BFAR	HGNC	ENSG00000103429				146	0	0	133	23	14.7436
NTAN1	0	genome.wustl.edu	37	16	15133905	15133905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	15133905	15133905	G	A	SNP	NTAN1	ENST00000287706	human	ensembl	74_37	-1	known	missense	c.560	p.A187V	0.933	NULL	NULL	-	no_errors	NTAN1	HGNC	ENSG00000157045				143	0	0	141	9	6
NPIPP1	0	genome.wustl.edu	37	16	15198488	15198488	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	15198488	15198488	G	A	SNP	NPIPP1	ENST00000534799	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.031	-	-	-	no_errors	NPIPP1	HGNC	ENSG00000188599				93	0	0	62	23	27.0588
ABCC1	0	genome.wustl.edu	37	16	16108453	16108453	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	16108453	16108453	C	A	SNP	ABCC1	ENST00000399408	human	ensembl	74_37	+1	known	missense	c.457	p.L153M	1.000	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222				108	0	0	77	25	24.5098
IFT140	0	genome.wustl.edu	37	16	1652450	1652450	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	1652450	1652450	G	A	SNP	IFT140	ENST00000426508	human	ensembl	74_37	-1	known	missense	c.290	p.T97M	0.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535				56	0	0	47	18	27.6923
MAPK8IP3	0	genome.wustl.edu	37	16	1818284	1818284	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	1818284	1818284	C	T	SNP	MAPK8IP3	ENST00000250894	human	ensembl	74_37	+1	known	missense	c.3644	p.A1215V	0.412	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834				170	0	0	126	41	24.5509
ARL6IP1	0	genome.wustl.edu	37	16	18806789	18806789	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	18806789	18806789	C	T	SNP	ARL6IP1	ENST00000304414	human	ensembl	74_37	-1	known	silent	c.405	p.K135	1.000	pfam_Reticulon	pfam_Reticulon	-	no_errors	ARL6IP1	HGNC	ENSG00000170540				56	0	0	51	6	10.5263
TMC5	0	genome.wustl.edu	37	16	19483534	19483534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	19483534	19483534	C	T	SNP	TMC5	ENST00000396229	human	ensembl	74_37	+1	known	missense	c.1907	p.A636V	0.457	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534				80	0	0	49	23	31.9444
IQCK	0	genome.wustl.edu	37	16	19745102	19745102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	19745102	19745102	G	A	SNP	IQCK	ENST00000320394	human	ensembl	74_37	+1	known	missense	c.329	p.R110H	0.000	NULL	NULL	-	no_errors	IQCK	HGNC	ENSG00000174628				126	1	0.787402	72	31	30.0971
ZNF598	0	genome.wustl.edu	37	16	2052681	2052681	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	2052681	2052681	C	A	SNP	ZNF598	ENST00000431526	human	ensembl	74_37	-1	known	missense	c.518	p.R173L	1.000	NULL	superfamily_PAH,smart_Znf_C2H2-like,pfscan_Znf_RING	-	no_errors	ZNF598	HGNC	ENSG00000167962				14	0	0	17	3	15
USP31	0	genome.wustl.edu	37	16	23080573	23080573	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	23080573	23080573	G	A	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	silent	c.2853	p.D951	0.032	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404				145	0	0	114	36	24
USP31	0	genome.wustl.edu	37	16	23080800	23080800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	23080800	23080800	G	A	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	missense	c.2626	p.R876C	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404				43	0	0	48	5	9.43396
LUC7L	0	genome.wustl.edu	37	16	258086	258086	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	258086	258086	A	G	SNP	LUC7L	ENST00000293872	human	ensembl	74_37	-1	known	silent	c.357	p.V119	1.000	pfam_Luc7-rel	pfam_Luc7-rel	-	no_errors	LUC7L	HGNC	ENSG00000007392				58	0	0	69	5	6.75676
GTF3C1	0	genome.wustl.edu	37	16	27481581	27481581	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	27481581	27481581	G	A	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	silent	c.4662	p.N1554	0.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				103	0	0	73	31	29.8077
GSG1L	0	genome.wustl.edu	37	16	27895882	27895882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	27895882	27895882	C	T	SNP	GSG1L	ENST00000447459	human	ensembl	74_37	-1	known	missense	c.475	p.E159K	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_GSG-1,pfam_PMP22/EMP/MP20/Claudin	-	no_errors	GSG1L	HGNC	ENSG00000169181				36	0	0	23	5	17.8571
SRRM2	0	genome.wustl.edu	37	16	2812472	2812472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	2812472	2812472	G	A	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	missense	c.1943	p.R648H	0.998	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				127	0	0	106	15	12.3967
SRRM2	0	genome.wustl.edu	37	16	2813634	2813634	+	Silent	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	2813634	2813634	C	G	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	silent	c.3105	p.L1035	0.001	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				102	0	0	94	11	10.4762
SPN	0	genome.wustl.edu	37	16	29675600	29675600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	29675600	29675600	G	A	SNP	SPN	ENST00000360121	human	ensembl	74_37	+1	known	missense	c.551	p.G184E	0.006	NULL	NULL	-	no_errors	SPN	HGNC	ENSG00000197471				185	0	0	156	20	11.3636
TAOK2	0	genome.wustl.edu	37	16	29996880	29996880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	29996880	29996880	G	A	SNP	TAOK2	ENST00000308893	human	ensembl	74_37	+1	known	missense	c.1769	p.R590H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				34	0	0	35	15	30
ITGAL	0	genome.wustl.edu	37	16	30532882	30532882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	30532882	30532882	G	A	SNP	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	missense	c.3409	p.A1137T	0.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAL	HGNC	ENSG00000005844				79	0	0	60	21	25.9259
ZNF689	0	genome.wustl.edu	37	16	30621257	30621257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	30621257	30621257	C	T	SNP	ZNF689	ENST00000287461	human	ensembl	74_37	-1	known	missense	c.106	p.V36M	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF689	HGNC	ENSG00000156853				20	0	0	21	2	8.69565
CLDN6	0	genome.wustl.edu	37	16	3065718	3065718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	3065718	3065718	G	A	SNP	CLDN6	ENST00000328796	human	ensembl	74_37	-1	known	missense	c.305	p.A102V	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697				50	0	0	34	5	12.8205
ARMC5	0	genome.wustl.edu	37	16	31473646	31473646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	31473646	31473646	C	T	SNP	ARMC5	ENST00000408912	human	ensembl	74_37	+1	known	missense	c.1063	p.R355C	1.000	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,superfamily_BTB/POZ_fold,smart_Armadillo,pfscan_Armadillo,pfscan_BTB/POZ-like	-	no_errors	ARMC5	HGNC	ENSG00000140691				49	0	0	29	11	27.5
ARMC5	0	genome.wustl.edu	37	16	31477726	31477726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	31477726	31477726	G	A	SNP	ARMC5	ENST00000408912	human	ensembl	74_37	+1	known	missense	c.2609	p.R870Q	1.000	superfamily_BTB/POZ_fold,pfscan_BTB/POZ-like	superfamily_ARM-type_fold,superfamily_BTB/POZ_fold,smart_Armadillo,pfscan_Armadillo,pfscan_BTB/POZ-like	-	no_errors	ARMC5	HGNC	ENSG00000140691				26	0	0	14	4	22.2222
BMS1P8	0	genome.wustl.edu	37	16	33490494	33490494	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	33490494	33490494	C	T	SNP	BMS1P8	ENST00000567036	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BMS1P8	HGNC	ENSG00000260518				16	0	0	13	3	18.75
ZNF597	0	genome.wustl.edu	37	16	3487176	3487176	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	3487176	3487176	G	A	SNP	ZNF597	ENST00000301744	human	ensembl	74_37	-1	known	nonsense	c.523	p.Q175*	0.880	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF597	HGNC	ENSG00000167981				172	0	0	122	44	26.506
SLX4	0	genome.wustl.edu	37	16	3639789	3639789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	3639789	3639789	C	T	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	missense	c.3850	p.V1284M	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				84	0	0	76	5	6.17284
DNASE1	0	genome.wustl.edu	37	16	3705926	3705926	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	3705926	3705926	A	G	SNP	DNASE1	ENST00000246949	human	ensembl	74_37	+1	known	missense	c.224	p.D75G	0.947	pirsf_DNase_I,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,prints_DNase_I	pirsf_DNase_I,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,prints_DNase_I	-	no_errors	DNASE1	HGNC	ENSG00000213918				85	0	0	74	8	9.7561
ADCY9	0	genome.wustl.edu	37	16	4164856	4164856	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	4164856	4164856	C	T	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	silent	c.588	p.T196	0.656	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				63	0	0	55	4	6.77966
ANKRD26P1	0	genome.wustl.edu	37	16	46597934	46597934	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	46597934	46597934	C	T	SNP	ANKRD26P1	ENST00000566201	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ANKRD26P1	HGNC	ENSG00000261239				20	0	0	11	3	21.4286
ABCC12	0	genome.wustl.edu	37	16	48139203	48139203	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	48139203	48139203	G	A	SNP	ABCC12	ENST00000311303	human	ensembl	74_37	-1	known	silent	c.2520	p.G840	0.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC12	HGNC	ENSG00000140798				23	0	0	15	9	37.5
GLYR1	0	genome.wustl.edu	37	16	4871450	4871450	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	4871450	4871450	G	T	SNP	GLYR1	ENST00000321919	human	ensembl	74_37	-1	known	missense	c.737	p.T246N	0.985	NULL	pfam_6PGDH_NADP-bd,pfam_PWWP_dom,superfamily_6-PGluconate_DH_C-like,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	GLYR1	HGNC	ENSG00000140632				37	0	0	41	3	6.81818
HEATR3	0	genome.wustl.edu	37	16	50106523	50106523	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	50106523	50106523	A	C	SNP	HEATR3	ENST00000299192	human	ensembl	74_37	+1	known	missense	c.520	p.S174R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR3	HGNC	ENSG00000155393				76	0	0	51	24	32
NAGPA	0	genome.wustl.edu	37	16	5083687	5083687	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	5083687	5083687	C	T	SNP	NAGPA	ENST00000312251	human	ensembl	74_37	-1	known	silent	c.129	p.A43	0.007	NULL	pfam_DUF2233,pfscan_EG-like_dom	-	no_errors	NAGPA	HGNC	ENSG00000103174				22	0	0	15	5	25
ALG1	0	genome.wustl.edu	37	16	5130946	5130946	+	Splice_Site	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	5130946	5130946	G	A	SNP	ALG1	ENST00000262374	human	ensembl	74_37	+1	known	splice_site	c.962-1	e10-1	1.000	-	-	-	no_errors	ALG1	HGNC	ENSG00000033011				112	0	0	62	21	25.3012
RBL2	0	genome.wustl.edu	37	16	53524153	53524153	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	53524153	53524153	A	C	SNP	RBL2	ENST00000262133	human	ensembl	74_37	+1	known	missense	c.3361	p.N1121H	1.000	NULL	pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL2	HGNC	ENSG00000103479				90	0	0	96	12	11.1111
IRX6	0	genome.wustl.edu	37	16	55363085	55363085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	55363085	55363085	G	A	SNP	IRX6	ENST00000290552	human	ensembl	74_37	+1	known	missense	c.1195	p.A399T	0.002	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX6	HGNC	ENSG00000159387				75	0	0	55	23	29.4872
IRX6	0	genome.wustl.edu	37	16	55363166	55363166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	55363166	55363166	C	T	SNP	IRX6	ENST00000290552	human	ensembl	74_37	+1	known	missense	c.1276	p.P426S	0.691	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX6	HGNC	ENSG00000159387				94	0	0	79	6	7.05882
HERPUD1	0	genome.wustl.edu	37	16	56966259	56966259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	56966259	56966259	G	A	SNP	HERPUD1	ENST00000439977	human	ensembl	74_37	+1	known	missense	c.103	p.G35S	0.982	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	HERPUD1	HGNC	ENSG00000051108				14	0	0	13	3	18.75
NLRC5	0	genome.wustl.edu	37	16	57095558	57095558	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	57095558	57095558	C	T	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	nonsense	c.4099	p.Q1367*	0.837	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				107	0	0	72	23	24.2105
CX3CL1	0	genome.wustl.edu	37	16	57416243	57416243	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	57416243	57416243	T	C	SNP	CX3CL1	ENST00000006053	human	ensembl	74_37	+1	known	missense	c.493	p.S165P	0.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CX3CL1	-	no_errors	CX3CL1	HGNC	ENSG00000006210				33	0	0	17	11	39.2857
GPR56	0	genome.wustl.edu	37	16	57689903	57689903	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	57689903	57689903	C	T	SNP	GPR56	ENST00000379696	human	ensembl	74_37	+1	known	missense	c.1016	p.P339L	1.000	prints_GPCR_2_orphan_rcpt_GPR56	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_orphan_rcpt_GPR56,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR56	HGNC	ENSG00000205336				136	0	0	109	9	7.62712
MMP15	0	genome.wustl.edu	37	16	58079177	58079177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	58079177	58079177	G	A	SNP	MMP15	ENST00000219271	human	ensembl	74_37	+1	known	missense	c.1837	p.V613M	1.000	pfam_Pept_M10A_metallopeptidase_C	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP15	HGNC	ENSG00000102996				29	0	0	23	2	8
CNOT1	0	genome.wustl.edu	37	16	58617056	58617056	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	58617056	58617056	C	T	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	silent	c.837	p.Q279	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				94	0	0	85	8	8.60215
CDH11	0	genome.wustl.edu	37	16	64981896	64981896	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	64981896	64981896	C	T	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	silent	c.2001	p.G667	0.899	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				94	0	0	97	9	8.49057
CDH11	0	genome.wustl.edu	37	16	65038607	65038607	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	65038607	65038607	C	T	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.166	p.V56I	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				60	0	0	65	6	8.4507
FHOD1	0	genome.wustl.edu	37	16	67265542	67265542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	67265542	67265542	G	A	SNP	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	missense	c.2383	p.R795W	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723				67	0	0	50	23	31.5068
PLEKHG4	0	genome.wustl.edu	37	16	67316181	67316181	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	67316181	67316181	A	G	SNP	PLEKHG4	ENST00000360461	human	ensembl	74_37	+1	known	silent	c.1182	p.Q394	0.090	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4	HGNC	ENSG00000196155				32	0	0	41	3	6.81818
CTCF	0	genome.wustl.edu	37	16	67660619	67660619	+	Splice_Site	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	67660619	67660619	G	A	SNP	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	splice_site	c.1518+1	e6+1	1.000	-	-	-	no_errors	CTCF	HGNC	ENSG00000102974				59	0	0	47	9	16.0714
RLTPR	0	genome.wustl.edu	37	16	67683857	67683857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	67683857	67683857	C	T	SNP	RLTPR	ENST00000334583	human	ensembl	74_37	+1	known	missense	c.2068	p.R690C	0.754	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753				26	0	0	17	10	37.037
LCAT	0	genome.wustl.edu	37	16	67976779	67976779	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	67976779	67976779	T	C	SNP	LCAT	ENST00000264005	human	ensembl	74_37	-1	known	missense	c.412	p.S138G	0.040	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	LCAT	HGNC	ENSG00000213398				97	0	0	75	23	23.4694
NOB1	0	genome.wustl.edu	37	16	69776336	69776336	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	69776336	69776336	T	C	SNP	NOB1	ENST00000268802	human	ensembl	74_37	-1	known	missense	c.1138	p.S380G	1.000	pirsf_D-site_20S_pre-rRNA_nuclease	pfam_NOB1_Zn-bd,smart_PIN_dom,pirsf_D-site_20S_pre-rRNA_nuclease	-	no_errors	NOB1	HGNC	ENSG00000141101				89	0	0	45	16	26.2295
HYDIN	0	genome.wustl.edu	37	16	70841851	70841851	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	70841851	70841851	T	C	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.14998	p.K5000E	0.340	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				94	0	0	90	12	11.7647
HYDIN	0	genome.wustl.edu	37	16	70852299	70852299	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	70852299	70852299	G	A	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	silent	c.14604	p.C4868	0.997	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				21	0	0	14	9	39.1304
ZFHX3	0	genome.wustl.edu	37	16	72821576	72821576	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	72821576	72821576	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	silent	c.10599	p.A3533	1.000	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				113	0	0	123	19	13.3803
ZFHX3	0	genome.wustl.edu	37	16	72991508	72991508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	72991508	72991508	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.2537	p.R846H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				108	0	0	82	10	10.8696
GLG1	0	genome.wustl.edu	37	16	74526897	74526897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	74526897	74526897	G	A	SNP	GLG1	ENST00000205061	human	ensembl	74_37	-1	known	missense	c.1192	p.L398F	1.000	pfam_Cys-rich_GLG1_repeat	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863				37	0	0	39	9	18.75
ADAMTS18	0	genome.wustl.edu	37	16	77334209	77334209	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	77334209	77334209	G	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	silent	c.2625	p.A875	0.001	superfamily_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				66	0	0	53	22	29.3333
CMIP	0	genome.wustl.edu	37	16	81711996	81711996	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	81711996	81711996	A	T	SNP	CMIP	ENST00000537098	human	ensembl	74_37	+1	known	missense	c.1151	p.E384V	1.000	NULL	NULL	-	no_errors	CMIP	HGNC	ENSG00000153815				11	0	0	17	2	10.5263
CMIP	0	genome.wustl.edu	37	16	81733366	81733366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	81733366	81733366	G	A	SNP	CMIP	ENST00000537098	human	ensembl	74_37	+1	known	missense	c.1715	p.C572Y	1.000	NULL	NULL	-	no_errors	CMIP	HGNC	ENSG00000153815				21	0	0	20	2	9.09091
TLDC1	0	genome.wustl.edu	37	16	84516207	84516207	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	84516207	84516207	C	T	SNP	TLDC1	ENST00000343629	human	ensembl	74_37	-1	known	silent	c.1068	p.P356	0.000	pfam_TLDc,smart_TLDc	pfam_TLDc,smart_TLDc	-	no_errors	TLDC1	HGNC	ENSG00000140950				119	0	0	63	26	29.2135
GSE1	0	genome.wustl.edu	37	16	85690909	85690909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	85690909	85690909	G	A	SNP	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	missense	c.1339	p.A447T	0.982	NULL	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149				101	1	0.980392	75	5	6.25
GSE1	0	genome.wustl.edu	37	16	85698686	85698686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	85698686	85698686	G	A	SNP	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	missense	c.2710	p.D904N	0.908	NULL	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149				72	0	0	56	3	5.08475
TMEM186	0	genome.wustl.edu	37	16	8889867	8889867	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	8889867	8889867	C	T	SNP	TMEM186	ENST00000333050	human	ensembl	74_37	-1	known	missense	c.584	p.R195H	0.000	NULL	NULL	-	no_errors	TMEM186	HGNC	ENSG00000184857				120	0	0	104	36	25.7143
TMEM186	0	genome.wustl.edu	37	16	8890042	8890042	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	8890042	8890042	C	T	SNP	TMEM186	ENST00000333050	human	ensembl	74_37	-1	known	missense	c.409	p.G137S	0.980	NULL	NULL	-	no_errors	TMEM186	HGNC	ENSG00000184857				90	0	0	89	6	6.31579
CPNE7	0	genome.wustl.edu	37	16	89661935	89661935	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	89661935	89661935	G	C	SNP	CPNE7	ENST00000268720	human	ensembl	74_37	+1	known	missense	c.1688	p.G563A	1.000	smart_VWF_A,pfscan_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE7	HGNC	ENSG00000178773				31	0	0	30	10	25
SPATA2L	0	genome.wustl.edu	37	16	89764300	89764300	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	89764300	89764300	G	A	SNP	SPATA2L	ENST00000289805	human	ensembl	74_37	-1	known	silent	c.717	p.D239	0.005	NULL	NULL	-	no_errors	SPATA2L	HGNC	ENSG00000158792				30	0	0	19	5	20.8333
MC1R	0	genome.wustl.edu	37	16	89986444	89986444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	89986444	89986444	C	T	SNP	MC1R	ENST00000555147	human	ensembl	74_37	+1	known	missense	c.778	p.H260Y	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MSH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC1R	HGNC	ENSG00000258839				94	0	0	82	8	8.88889
MYH13	0	genome.wustl.edu	37	17	10265498	10265498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	10265498	10265498	G	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.442	p.R148C	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				189	0	0	146	12	7.59494
TEKT3	0	genome.wustl.edu	37	17	15215749	15215749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	15215749	15215749	G	A	SNP	TEKT3	ENST00000338696	human	ensembl	74_37	-1	known	missense	c.928	p.R310C	0.999	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT3	HGNC	ENSG00000125409				53	0	0	67	5	6.94444
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				49	0	0	60	29	32.5843
TRIM16	0	genome.wustl.edu	37	17	15532509	15532509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	15532509	15532509	G	A	SNP	TRIM16	ENST00000336708	human	ensembl	74_37	-1	known	missense	c.1115	p.A372V	0.834	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM16	HGNC	ENSG00000221926				70	0	0	41	4	8.88889
TBC1D26	0	genome.wustl.edu	37	17	15644464	15644464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	15644464	15644464	G	A	SNP	TBC1D26	ENST00000437605	human	ensembl	74_37	+1	known	missense	c.575	p.R192H	0.569	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D26	HGNC	ENSG00000214946				76	0	0	59	15	20.2703
NCOR1	0	genome.wustl.edu	37	17	15961030	15961030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	15961030	15961030	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.6190	p.A2064T	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				67	0	0	60	22	26.8293
RAI1	0	genome.wustl.edu	37	17	17698552	17698552	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	17698552	17698552	G	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	nonsense	c.2290	p.E764*	0.907	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				66	0	0	65	16	19.7531
FLII	0	genome.wustl.edu	37	17	18148464	18148464	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	18148464	18148464	C	A	SNP	FLII	ENST00000327031	human	ensembl	74_37	-1	known	missense	c.3798	p.K1266N	0.128	NULL	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731				106	0	0	107	10	8.54701
PRPSAP2	0	genome.wustl.edu	37	17	18833976	18833976	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	18833976	18833976	T	C	SNP	PRPSAP2	ENST00000268835	human	ensembl	74_37	+1	known	missense	c.1075	p.S359P	1.000	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP2	HGNC	ENSG00000141127				49	0	0	35	6	14.6341
SGSM2	0	genome.wustl.edu	37	17	2276761	2276761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	2276761	2276761	G	A	SNP	SGSM2	ENST00000268989	human	ensembl	74_37	+1	known	missense	c.2054	p.S685N	1.000	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258				96	0	0	62	4	6.06061
NOS2	0	genome.wustl.edu	37	17	26105782	26105782	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	26105782	26105782	C	T	SNP	NOS2	ENST00000313735	human	ensembl	74_37	-1	known	silent	c.1215	p.K405	0.994	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171				107	0	0	81	32	28.3186
SPAG5	0	genome.wustl.edu	37	17	26911493	26911493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	26911493	26911493	G	A	SNP	SPAG5	ENST00000321765	human	ensembl	74_37	-1	known	missense	c.2167	p.R723W	0.796	NULL	NULL	-	no_errors	SPAG5	HGNC	ENSG00000076382				149	0	0	148	10	6.32911
SGK494	0	genome.wustl.edu	37	17	26940691	26940691	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	26940691	26940691	G	A	SNP	SGK494	ENST00000301037	human	ensembl	74_37	-1	known	missense	c.91	p.R31W	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK494	Clone_based_vega_gene	ENSG00000167524				47	0	0	41	10	19.6078
MYO18A	0	genome.wustl.edu	37	17	27424848	27424848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	27424848	27424848	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	missense	c.4060	p.R1354W	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				160	0	0	112	40	26.3158
MYO18A	0	genome.wustl.edu	37	17	27438750	27438750	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	27438750	27438750	A	G	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	silent	c.2730	p.G910	0.972	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				45	0	0	32	5	13.5135
SSH2	0	genome.wustl.edu	37	17	27963595	27963595	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	27963595	27963595	T	C	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	silent	c.1572	p.K524	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				79	0	0	59	31	34.4444
SLC6A4	0	genome.wustl.edu	37	17	28545192	28545192	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	28545192	28545192	G	A	SNP	SLC6A4	ENST00000261707	human	ensembl	74_37	-1	known	silent	c.642	p.S214	0.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576				72	0	0	45	17	27.4194
CPD	0	genome.wustl.edu	37	17	28791624	28791624	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	28791624	28791624	T	C	SNP	CPD	ENST00000225719	human	ensembl	74_37	+1	known	missense	c.3935	p.L1312S	0.998	superfamily_CarboxyPept-like_regulatory	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582				153	0	0	166	20	10.7527
OR1D5	0	genome.wustl.edu	37	17	2966259	2966259	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	2966259	2966259	T	C	SNP	OR1D5	ENST00000575751	human	ensembl	74_37	-1	known	missense	c.643	p.T215A	0.007	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1D5	HGNC	ENSG00000262628				54	0	0	33	3	8.33333
RAB11FIP4	0	genome.wustl.edu	37	17	29848367	29848367	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	29848367	29848367	G	A	SNP	RAB11FIP4	ENST00000325874	human	ensembl	74_37	+1	known	silent	c.747	p.S249	0.001	NULL	pfam_Rab-bd_FIP-RBD,pfscan_EF_hand_dom	-	no_errors	RAB11FIP4	HGNC	ENSG00000131242				22	0	0	27	10	27.027
AP2B1	0	genome.wustl.edu	37	17	33954489	33954489	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	33954489	33954489	A	G	SNP	AP2B1	ENST00000312678	human	ensembl	74_37	+1	known	missense	c.1024	p.M342V	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP2B1	HGNC	ENSG00000006125				53	0	0	47	21	30.8824
MMP28	0	genome.wustl.edu	37	17	34106043	34106043	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	34106043	34106043	G	T	SNP	MMP28	ENST00000587639	human	ensembl	74_37	-1	known	silent	c.228	p.G76	0.999	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	-	no_errors	MMP28	HGNC	ENSG00000129270				34	0	0	20	7	25.9259
ACACA	0	genome.wustl.edu	37	17	35580491	35580491	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	35580491	35580491	T	A	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.3506	p.D1169V	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				97	0	0	58	22	27.5
SRCIN1	0	genome.wustl.edu	37	17	36720452	36720452	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	36720452	36720452	G	A	SNP	SRCIN1	ENST00000264659	human	ensembl	74_37	-1	known	missense	c.443	p.S148L	1.000	NULL	pfam_AIP3_C	-	no_errors	SRCIN1	HGNC	ENSG00000017373				8	0	0	7	5	41.6667
GSDMA	0	genome.wustl.edu	37	17	38133118	38133118	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	38133118	38133118	T	C	SNP	GSDMA	ENST00000301659	human	ensembl	74_37	+1	known	missense	c.1145	p.F382S	0.837	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMA	HGNC	ENSG00000167914				94	0	0	79	29	26.8519
CCR7	0	genome.wustl.edu	37	17	38711960	38711960	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	38711960	38711960	T	C	SNP	CCR7	ENST00000246657	human	ensembl	74_37	-1	known	silent	c.171	p.K57	0.981	prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_Chemokine_CCRL1	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR7,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_Chemokine_CCRL1	-	no_errors	CCR7	HGNC	ENSG00000126353				71	0	0	56	7	11.1111
SMARCE1	0	genome.wustl.edu	37	17	38792670	38792670	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	38792670	38792670	A	C	SNP	SMARCE1	ENST00000348513	human	ensembl	74_37	-1	known	missense	c.346	p.L116V	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SMARCE1	HGNC	ENSG00000073584				193	0	0	192	24	11.1111
KRT28	0	genome.wustl.edu	37	17	38953225	38953225	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	38953225	38953225	G	A	SNP	KRT28	ENST00000306658	human	ensembl	74_37	-1	known	silent	c.921	p.T307	0.002	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908				83	0	0	65	25	27.7778
KRT23	0	genome.wustl.edu	37	17	39092710	39092710	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	39092710	39092710	G	A	SNP	KRT23	ENST00000209718	human	ensembl	74_37	-1	known	missense	c.146	p.T49M	0.000	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT23	HGNC	ENSG00000108244				55	0	0	40	13	24.5283
KRTAP1-1	0	genome.wustl.edu	37	17	39197586	39197586	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	39197586	39197586	A	G	SNP	KRTAP1-1	ENST00000306271	human	ensembl	74_37	-1	known	missense	c.64	p.S22P	1.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP1-1	HGNC	ENSG00000188581				80	0	0	58	7	10.7692
KRT38	0	genome.wustl.edu	37	17	39595537	39595537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	39595537	39595537	G	A	SNP	KRT38	ENST00000246646	human	ensembl	74_37	-1	known	missense	c.650	p.A217V	0.097	pfam_IF,prints_Keratin_I	pfam_IF,prints_Keratin_I	-	no_errors	KRT38	HGNC	ENSG00000171360				91	0	0	62	20	24.3902
KRT32	0	genome.wustl.edu	37	17	39622023	39622023	+	Splice_Site	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	39622023	39622023	A	G	SNP	KRT32	ENST00000225899	human	ensembl	74_37	-1	known	splice_site	c.708+2	e3+2	1.000	-	-	-	no_errors	KRT32	HGNC	ENSG00000108759				69	0	0	73	5	6.41026
KRT9	0	genome.wustl.edu	37	17	39723536	39723536	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	39723536	39723536	A	G	SNP	KRT9	ENST00000246662	human	ensembl	74_37	-1	known	missense	c.1861	p.S621P	0.880	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403				89	0	0	70	14	16.6667
CNP	0	genome.wustl.edu	37	17	40120397	40120397	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	40120397	40120397	G	A	SNP	CNP	ENST00000393892	human	ensembl	74_37	+1	known	silent	c.315	p.E105	1.000	pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,pirsf_CNPase	pfam_CNPase,pfam_Zeta_toxin_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,superfamily_P-loop_NTPase,pirsf_CNPase	-	no_errors	CNP	HGNC	ENSG00000173786				21	0	0	32	4	11.1111
KCNH4	0	genome.wustl.edu	37	17	40312256	40312256	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	40312256	40312256	C	T	SNP	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	silent	c.2856	p.T952	0.001	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558				96	0	0	71	6	7.79221
WNK4	0	genome.wustl.edu	37	17	40948272	40948272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	40948272	40948272	G	A	SNP	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	missense	c.3563	p.R1188H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				14	0	0	6	3	33.3333
DHX8	0	genome.wustl.edu	37	17	41585055	41585055	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	41585055	41585055	A	G	SNP	DHX8	ENST00000262415	human	ensembl	74_37	+1	known	missense	c.2108	p.K703R	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596				118	0	0	121	11	8.33333
MPP2	0	genome.wustl.edu	37	17	41960294	41960294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	41960294	41960294	G	A	SNP	MPP2	ENST00000461854	human	ensembl	74_37	-1	known	missense	c.502	p.R168C	1.000	superfamily_PDZ,pfscan_PDZ	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP2	HGNC	ENSG00000108852				275	0	0	248	21	7.80669
ITGA2B	0	genome.wustl.edu	37	17	42461924	42461924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	42461924	42461924	C	T	SNP	ITGA2B	ENST00000262407	human	ensembl	74_37	-1	known	missense	c.829	p.G277R	0.985	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961				127	1	0.78125	64	26	28.8889
ADAM11	0	genome.wustl.edu	37	17	42837183	42837183	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	42837183	42837183	G	A	SNP	ADAM11	ENST00000200557	human	ensembl	74_37	+1	known	missense	c.155	p.R52H	0.997	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM11	HGNC	ENSG00000073670				33	0	0	15	12	44.4444
ADAM11	0	genome.wustl.edu	37	17	42855087	42855087	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	42855087	42855087	C	T	SNP	ADAM11	ENST00000200557	human	ensembl	74_37	+1	known	silent	c.1926	p.D642	0.995	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM11	HGNC	ENSG00000073670				71	0	0	51	20	28.169
MAP3K14	0	genome.wustl.edu	37	17	43345039	43345039	+	RNA	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	43345039	43345039	T	C	SNP	MAP3K14	ENST00000344686	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAP3K14	HGNC	ENSG00000006062				137	0	0	110	11	9.09091
SPNS3	0	genome.wustl.edu	37	17	4348354	4348354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	4348354	4348354	C	T	SNP	SPNS3	ENST00000355530	human	ensembl	74_37	+1	known	missense	c.293	p.A98V	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS3	HGNC	ENSG00000182557				231	0	0	153	71	31.6964
KPNB1	0	genome.wustl.edu	37	17	45727597	45727597	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	45727597	45727597	C	T	SNP	KPNB1	ENST00000577918	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	KPNB1	HGNC	ENSG00000108424				38	0	0	24	9	27.2727
SP2	0	genome.wustl.edu	37	17	45993853	45993853	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	45993853	45993853	A	G	SNP	SP2	ENST00000376741	human	ensembl	74_37	+1	known	missense	c.416	p.Q139R	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP2	HGNC	ENSG00000167182				103	0	0	93	12	11.4286
SP2	0	genome.wustl.edu	37	17	46002400	46002400	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	46002400	46002400	C	T	SNP	SP2	ENST00000376741	human	ensembl	74_37	+1	known	silent	c.1488	p.P496	0.003	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP2	HGNC	ENSG00000167182				64	0	0	56	8	12.5
MIR10A	0	genome.wustl.edu	37	17	46657180	46657180	+	RNA	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	46657180	46657180	T	A	SNP	MIR10A	ENST00000548801	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.349	-	-	-	no_errors	MIR10A	HGNC	ENSG00000257178				18	0	0	20	6	23.0769
PSMB6	0	genome.wustl.edu	37	17	4701657	4701657	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	4701657	4701657	G	A	SNP	PSMB6	ENST00000270586	human	ensembl	74_37	+1	known	silent	c.660	p.R220	0.993	NULL	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB6	HGNC	ENSG00000142507				235	0	0	195	12	5.7971
LRRC59	0	genome.wustl.edu	37	17	48472334	48472334	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	48472334	48472334	C	T	SNP	LRRC59	ENST00000225972	human	ensembl	74_37	-1	known	missense	c.121	p.A41T	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC59	HGNC	ENSG00000108829				64	0	0	43	6	12.2449
SPATA20	0	genome.wustl.edu	37	17	48632944	48632944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	48632944	48632944	C	T	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	missense	c.2330	p.T777I	0.998	NULL	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				65	0	0	60	12	16.6667
CACNA1G	0	genome.wustl.edu	37	17	48692826	48692826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	48692826	48692826	G	A	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.4864	p.G1622R	1.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				55	0	0	34	10	22.7273
CACNA1G	0	genome.wustl.edu	37	17	48703460	48703460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	48703460	48703460	C	T	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.6482	p.P2161L	0.020	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				56	0	0	35	15	30
KIF1C	0	genome.wustl.edu	37	17	4910366	4910366	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	4910366	4910366	T	C	SNP	KIF1C	ENST00000320785	human	ensembl	74_37	+1	known	missense	c.1322	p.M441T	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250				27	0	0	38	14	26.9231
KIF2B	0	genome.wustl.edu	37	17	51902173	51902173	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	51902173	51902173	A	C	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.1779	p.K593N	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				103	0	0	99	6	5.71429
STXBP4	0	genome.wustl.edu	37	17	53077036	53077036	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	53077036	53077036	G	A	SNP	STXBP4	ENST00000376352	human	ensembl	74_37	+1	known	missense	c.331	p.D111N	0.000	NULL	pfam_WW_dom,pfam_PDZ,superfamily_PDZ,superfamily_WW_dom,smart_PDZ,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom	-	no_errors	STXBP4	HGNC	ENSG00000166263				47	0	0	38	9	19.1489
BZRAP1	0	genome.wustl.edu	37	17	56389881	56389881	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	56389881	56389881	A	G	SNP	BZRAP1	ENST00000355701	human	ensembl	74_37	-1	known	silent	c.2301	p.P767	0.000	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379				115	0	0	87	20	18.6916
BZRAP1	0	genome.wustl.edu	37	17	56389972	56389972	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	56389972	56389972	C	G	SNP	BZRAP1	ENST00000355701	human	ensembl	74_37	-1	known	missense	c.2210	p.S737T	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379				86	0	0	83	9	9.78261
SUPT4H1	0	genome.wustl.edu	37	17	56424934	56424934	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	56424934	56424934	A	G	SNP	SUPT4H1	ENST00000225504	human	ensembl	74_37	-1	known	missense	c.188	p.M63T	1.000	pfam_Spt4/RpoE2_Znf,pirsf_Spt4	pfam_Spt4/RpoE2_Znf,pirsf_Spt4	-	no_errors	SUPT4H1	HGNC	ENSG00000213246				76	0	0	54	6	10
TLK2	0	genome.wustl.edu	37	17	60657500	60657500	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	60657500	60657500	A	G	SNP	TLK2	ENST00000326270	human	ensembl	74_37	+1	known	missense	c.1381	p.R461G	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TLK2	HGNC	ENSG00000146872				58	0	0	53	3	5.35714
SMURF2	0	genome.wustl.edu	37	17	62551006	62551006	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	62551006	62551006	A	G	SNP	SMURF2	ENST00000262435	human	ensembl	74_37	-1	known	silent	c.1716	p.P572	0.995	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF2	HGNC	ENSG00000108854				45	0	0	53	5	8.62069
CEP112	0	genome.wustl.edu	37	17	64049989	64049989	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	64049989	64049989	A	G	SNP	CEP112	ENST00000392769	human	ensembl	74_37	-1	known	silent	c.1083	p.N361	0.338	NULL	superfamily_t-SNARE	-	no_errors	CEP112	HGNC	ENSG00000154240				80	0	0	76	6	7.31707
GEMIN4	0	genome.wustl.edu	37	17	650620	650620	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	650620	650620	G	A	SNP	GEMIN4	ENST00000319004	human	ensembl	74_37	-1	known	silent	c.663	p.R221	0.000	NULL	NULL	-	no_errors	GEMIN4	HGNC	ENSG00000179409				97	0	0	72	30	29.4118
BPTF	0	genome.wustl.edu	37	17	65888143	65888143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	65888143	65888143	G	A	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.2426	p.G809D	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				39	0	0	27	14	34.1463
ABCA9	0	genome.wustl.edu	37	17	66982372	66982372	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	66982372	66982372	G	A	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	nonsense	c.4141	p.Q1381*	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				128	0	0	87	38	30.4
ABCA10	0	genome.wustl.edu	37	17	67170783	67170783	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	67170783	67170783	C	A	SNP	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	nonsense	c.3013	p.G1005*	0.001	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				86	0	0	122	10	7.57576
TEKT1	0	genome.wustl.edu	37	17	6718526	6718526	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	6718526	6718526	T	C	SNP	TEKT1	ENST00000338694	human	ensembl	74_37	-1	known	silent	c.585	p.S195	0.227	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT1	HGNC	ENSG00000167858				151	0	0	108	9	7.69231
ABCA10	0	genome.wustl.edu	37	17	67210857	67210857	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	67210857	67210857	G	A	SNP	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	nonsense	c.994	p.R332*	0.003	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				94	0	0	86	9	9.47368
SLC39A11	0	genome.wustl.edu	37	17	70943934	70943934	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	70943934	70943934	A	G	SNP	SLC39A11	ENST00000542342	human	ensembl	74_37	-1	known	silent	c.387	p.G129	0.043	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A11	HGNC	ENSG00000133195				87	0	0	72	5	6.49351
CDC42EP4	0	genome.wustl.edu	37	17	71281599	71281599	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	71281599	71281599	A	G	SNP	CDC42EP4	ENST00000581014	human	ensembl	74_37	-1	putative	nonstop	c.238	p.*80R	0.978	NULL	NULL	-	no_errors	CDC42EP4	HGNC	ENSG00000179604				157	0	0	123	13	9.55882
SDK2	0	genome.wustl.edu	37	17	71380095	71380095	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	71380095	71380095	C	T	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	missense	c.4625	p.R1542Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188				46	0	0	37	4	9.7561
SDK2	0	genome.wustl.edu	37	17	71398134	71398134	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	71398134	71398134	G	A	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	silent	c.2631	p.P877	0.010	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188				25	0	0	15	9	37.5
ELP5	0	genome.wustl.edu	37	17	7155822	7155822	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	7155822	7155822	A	G	SNP	ELP5	ENST00000354429	human	ensembl	74_37	+1	known	missense	c.1	p.M1V	0.025	NULL	pfam_Elp5	-	no_errors	ELP5	HGNC	ENSG00000170291				25	0	0	27	4	12.9032
OTOP3	0	genome.wustl.edu	37	17	72945440	72945440	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	72945440	72945440	G	A	SNP	OTOP3	ENST00000328801	human	ensembl	74_37	+1	known	missense	c.1720	p.G574S	0.997	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP3	HGNC	ENSG00000182938				97	0	0	93	8	7.92079
C17orf74	0	genome.wustl.edu	37	17	7329644	7329644	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	7329644	7329644	T	C	SNP	C17orf74	ENST00000333870	human	ensembl	74_37	+1	known	missense	c.334	p.F112L	0.000	NULL	NULL	-	no_errors	C17orf74	HGNC	ENSG00000184560				184	0	0	103	52	33.5484
LLGL2	0	genome.wustl.edu	37	17	73568034	73568034	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	73568034	73568034	C	T	SNP	LLGL2	ENST00000392550	human	ensembl	74_37	+1	known	silent	c.2349	p.D783	0.955	NULL	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350				41	0	0	30	5	14.2857
ZBTB4	0	genome.wustl.edu	37	17	7365271	7365271	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	7365271	7365271	G	A	SNP	ZBTB4	ENST00000311403	human	ensembl	74_37	-1	known	silent	c.3030	p.G1010	0.998	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282				43	0	0	51	10	16.3934
ITGB4	0	genome.wustl.edu	37	17	73747158	73747158	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	73747158	73747158	C	T	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	silent	c.3759	p.Y1253	0.109	pirsf_Integrin_bsu-4,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				80	0	0	53	18	25.3521
FBF1	0	genome.wustl.edu	37	17	73916363	73916363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	73916363	73916363	C	T	SNP	FBF1	ENST00000389570	human	ensembl	74_37	-1	known	missense	c.1780	p.E594K	1.000	superfamily_HRDC-like	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878				32	0	0	14	6	30
ACOX1	0	genome.wustl.edu	37	17	73946860	73946860	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	73946860	73946860	C	T	SNP	ACOX1	ENST00000293217	human	ensembl	74_37	-1	known	silent	c.1293	p.T431	0.001	superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX1	HGNC	ENSG00000161533				99	0	0	56	24	30
EVPL	0	genome.wustl.edu	37	17	74005245	74005245	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	74005245	74005245	C	T	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	silent	c.4041	p.A1347	0.000	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				58	0	0	62	4	6.06061
EVPL	0	genome.wustl.edu	37	17	74011054	74011054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	74011054	74011054	C	T	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	missense	c.2165	p.R722H	0.741	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				60	0	0	44	7	13.7255
QRICH2	0	genome.wustl.edu	37	17	74278023	74278023	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	74278023	74278023	C	T	SNP	QRICH2	ENST00000262765	human	ensembl	74_37	-1	known	silent	c.3687	p.R1229	0.990	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646				29	0	0	24	5	17.2414
SPHK1	0	genome.wustl.edu	37	17	74382513	74382513	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	74382513	74382513	G	A	SNP	SPHK1	ENST00000323374	human	ensembl	74_37	+1	known	missense	c.556	p.A186T	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK1	HGNC	ENSG00000176170				63	0	0	56	4	6.66667
ST6GALNAC2	0	genome.wustl.edu	37	17	74566696	74566696	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	74566696	74566696	A	T	SNP	ST6GALNAC2	ENST00000225276	human	ensembl	74_37	-1	known	missense	c.724	p.S242T	0.279	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GALNAC2	HGNC	ENSG00000070731				45	0	0	38	4	9.52381
SEPT9	0	genome.wustl.edu	37	17	75398265	75398265	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	75398265	75398265	C	T	SNP	SEPT9	ENST00000427177	human	ensembl	74_37	+1	known	silent	c.201	p.G67	0.929	NULL	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	SEPT9	HGNC	ENSG00000184640				61	0	0	50	20	28.5714
TNRC6C	0	genome.wustl.edu	37	17	76089061	76089061	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	76089061	76089061	A	G	SNP	TNRC6C	ENST00000335749	human	ensembl	74_37	+1	known	missense	c.4009	p.I1337V	1.000	NULL	pfam_Argonaute_hook_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687				44	0	0	31	3	8.82353
DNAH17	0	genome.wustl.edu	37	17	76548815	76548815	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	76548815	76548815	A	G	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	silent	c.2251	p.L751	0.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				242	0	0	228	22	8.8
DNAH2	0	genome.wustl.edu	37	17	7695578	7695578	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	7695578	7695578	A	G	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	silent	c.7062	p.V2354	0.859	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				74	0	0	91	8	8.08081
ENGASE	0	genome.wustl.edu	37	17	77076406	77076406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	77076406	77076406	G	A	SNP	ENGASE	ENST00000579016	human	ensembl	74_37	+1	known	missense	c.683	p.R228H	0.431	pfam_Glyco_hydro_85	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280				94	0	0	45	16	26.2295
DNAH2	0	genome.wustl.edu	37	17	7721318	7721318	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	7721318	7721318	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.10291	p.A3431T	0.998	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				160	0	0	155	19	10.9195
KDM6B	0	genome.wustl.edu	37	17	7750893	7750893	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	7750893	7750893	G	A	SNP	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	silent	c.1287	p.A429	0.984	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				50	0	0	32	19	37.2549
CBX4	0	genome.wustl.edu	37	17	77809003	77809003	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	77809003	77809003	C	T	SNP	CBX4	ENST00000269397	human	ensembl	74_37	-1	known	silent	c.438	p.K146	0.996	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,prints_Chromo_dom_subgr,pfscan_Chromo_domain/shadow	-	no_errors	CBX4	HGNC	ENSG00000141582				130	0	0	95	13	12.037
CHD3	0	genome.wustl.edu	37	17	7807305	7807305	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	7807305	7807305	A	G	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.3890	p.D1297G	1.000	pfam_DUF1087	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				103	0	0	75	4	5.06329
CHD3	0	genome.wustl.edu	37	17	7813856	7813856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	7813856	7813856	C	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.5701	p.R1901C	1.000	pfam_CHD_C2	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				70	0	0	50	8	13.7931
RNF213	0	genome.wustl.edu	37	17	78269393	78269393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	78269393	78269393	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.1792	p.V598M	0.001	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				25	0	0	30	10	25
RPTOR	0	genome.wustl.edu	37	17	78599517	78599517	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	78599517	78599517	T	C	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	silent	c.189	p.V63	0.010	prints_Raptor	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				149	0	0	115	11	8.73016
AATK	0	genome.wustl.edu	37	17	79094124	79094124	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	79094124	79094124	C	T	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	silent	c.3612	p.A1204	0.031	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409				21	0	0	22	4	15.3846
AZI1	0	genome.wustl.edu	37	17	79173252	79173252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	79173252	79173252	C	T	SNP	AZI1	ENST00000269392	human	ensembl	74_37	-1	known	missense	c.1121	p.R374Q	0.000	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577				15	0	0	13	6	31.5789
C17orf70	0	genome.wustl.edu	37	17	79512907	79512907	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	79512907	79512907	G	A	SNP	C17orf70	ENST00000327787	human	ensembl	74_37	-1	known	silent	c.2175	p.G725	0.000	NULL	NULL	-	no_errors	C17orf70	HGNC	ENSG00000185504				30	0	0	11	4	26.6667
TSPAN10	0	genome.wustl.edu	37	17	79612028	79612028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	79612028	79612028	G	A	SNP	TSPAN10	ENST00000328585	human	ensembl	74_37	+1	known	missense	c.47	p.G16D	0.001	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN10	HGNC	ENSG00000182612				38	0	0	41	3	6.81818
ALYREF	0	genome.wustl.edu	37	17	79846261	79846261	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	79846261	79846261	G	A	SNP	ALYREF	ENST00000505490	human	ensembl	74_37	-1	known	silent	c.636	p.G212	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ALYREF	HGNC	ENSG00000183684				34	0	0	31	2	6.06061
RFNG	0	genome.wustl.edu	37	17	80006940	80006940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	80006940	80006940	G	A	SNP	RFNG	ENST00000310496	human	ensembl	74_37	-1	known	missense	c.881	p.A294V	0.267	pfam_Fringe-like,pirsf_Fringe	pfam_Fringe-like,pirsf_Fringe	-	no_errors	RFNG	HGNC	ENSG00000169733				58	0	0	39	10	20.4082
CCDC57	0	genome.wustl.edu	37	17	80059604	80059604	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	80059604	80059604	C	T	SNP	CCDC57	ENST00000389641	human	ensembl	74_37	-1	known	missense	c.2705	p.G902D	0.000	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155				149	0	0	125	12	8.75912
CSNK1D	0	genome.wustl.edu	37	17	80213367	80213367	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	80213367	80213367	G	T	SNP	CSNK1D	ENST00000314028	human	ensembl	74_37	-1	known	missense	c.274	p.L92I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1D	HGNC	ENSG00000141551				123	0	0	112	15	11.811
CD7	0	genome.wustl.edu	37	17	80274772	80274772	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	80274772	80274772	C	T	SNP	CD7	ENST00000581434	human	ensembl	74_37	-1	known	missense	c.98	p.G33E	0.011	NULL	NULL	-	no_errors	CD7	HGNC	ENSG00000173762				79	0	0	47	4	7.84314
TBCD	0	genome.wustl.edu	37	17	80861301	80861301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	80861301	80861301	C	T	SNP	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	missense	c.1751	p.A584V	0.030	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556				11	0	0	9	3	25
CCDC42	0	genome.wustl.edu	37	17	8638542	8638542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	8638542	8638542	C	T	SNP	CCDC42	ENST00000293845	human	ensembl	74_37	-1	known	missense	c.745	p.A249T	0.927	NULL	NULL	-	no_errors	CCDC42	HGNC	ENSG00000161973				60	0	0	36	11	23.4043
APCDD1	0	genome.wustl.edu	37	18	10468632	10468632	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	10468632	10468632	C	T	SNP	APCDD1	ENST00000355285	human	ensembl	74_37	+1	known	silent	c.225	p.G75	0.972	NULL	NULL	-	no_errors	APCDD1	HGNC	ENSG00000154856				66	0	0	45	5	10
MC2R	0	genome.wustl.edu	37	18	13884951	13884951	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	13884951	13884951	G	A	SNP	MC2R	ENST00000327606	human	ensembl	74_37	-1	known	silent	c.567	p.I189	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ACTH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn	-	no_errors	MC2R	HGNC	ENSG00000185231				93	0	0	80	8	9.09091
ANKRD30B	0	genome.wustl.edu	37	18	14782566	14782566	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	14782566	14782566	C	A	SNP	ANKRD30B	ENST00000358984	human	ensembl	74_37	+1	known	missense	c.1523	p.P508H	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30B	HGNC	ENSG00000180777				32	0	0	20	6	23.0769
SS18	0	genome.wustl.edu	37	18	23637588	23637588	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	23637588	23637588	G	A	SNP	SS18	ENST00000415083	human	ensembl	74_37	-1	known	missense	c.350	p.P117L	1.000	NULL	pfam_SS18_fam	-	no_errors	SS18	HGNC	ENSG00000141380				91	0	0	75	13	14.7727
DSG4	0	genome.wustl.edu	37	18	28965115	28965115	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	28965115	28965115	A	G	SNP	DSG4	ENST00000359747	human	ensembl	74_37	+1	known	missense	c.65	p.N22S	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065				100	0	0	83	10	10.7527
TRAPPC8	0	genome.wustl.edu	37	18	29522637	29522637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	29522637	29522637	G	A	SNP	TRAPPC8	ENST00000283351	human	ensembl	74_37	-1	known	missense	c.91	p.L31F	1.000	NULL	NULL	-	no_errors	TRAPPC8	HGNC	ENSG00000153339				10	0	0	8	3	27.2727
ASXL3	0	genome.wustl.edu	37	18	31326458	31326458	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	31326458	31326458	C	T	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.6646	p.R2216W	1.000	superfamily_Znf_FYVE_PHD	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				41	0	0	30	6	16.6667
DTNA	0	genome.wustl.edu	37	18	32455306	32455306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	32455306	32455306	C	T	SNP	DTNA	ENST00000269190	human	ensembl	74_37	+1	known	missense	c.1769	p.T590M	0.986	pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNA	HGNC	ENSG00000134769				85	0	0	67	27	28.7234
SLC39A6	0	genome.wustl.edu	37	18	33706548	33706548	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	33706548	33706548	C	T	SNP	SLC39A6	ENST00000269187	human	ensembl	74_37	-1	known	silent	c.423	p.K141	0.271	NULL	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424				45	0	0	40	7	14.8936
ELP2	0	genome.wustl.edu	37	18	33726340	33726340	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	33726340	33726340	A	G	SNP	ELP2	ENST00000358232	human	ensembl	74_37	+1	known	missense	c.1121	p.N374S	0.812	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759				59	0	0	54	12	18.1818
DLGAP1	0	genome.wustl.edu	37	18	3729198	3729198	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	3729198	3729198	A	G	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	missense	c.1528	p.S510P	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579				33	0	0	28	13	31.7073
ACAA2	0	genome.wustl.edu	37	18	47311699	47311699	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	47311699	47311699	T	C	SNP	ACAA2	ENST00000285093	human	ensembl	74_37	-1	known	missense	c.977	p.Q326R	1.000	pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAA2	HGNC	ENSG00000167315				38	0	0	39	5	11.3636
CCDC68	0	genome.wustl.edu	37	18	52571597	52571597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	52571597	52571597	G	A	SNP	CCDC68	ENST00000337363	human	ensembl	74_37	-1	known	missense	c.1000	p.R334W	0.999	NULL	superfamily_Prefoldin	-	no_errors	CCDC68	HGNC	ENSG00000166510				62	0	0	50	13	20.6349
EPB41L3	0	genome.wustl.edu	37	18	5419828	5419828	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	5419828	5419828	T	G	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.1388	p.N463T	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				73	0	0	73	4	5.19481
ZNF532	0	genome.wustl.edu	37	18	56651464	56651464	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	56651464	56651464	C	T	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	silent	c.3672	p.I1224	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657				46	0	0	52	6	10.3448
SERPINB4	0	genome.wustl.edu	37	18	61305030	61305030	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	61305030	61305030	T	C	SNP	SERPINB4	ENST00000341074	human	ensembl	74_37	-1	known	missense	c.1096	p.N366D	0.994	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB4	HGNC	ENSG00000206073				130	0	0	148	13	8.07453
SERPINB8	0	genome.wustl.edu	37	18	61649053	61649053	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	61649053	61649053	G	A	SNP	SERPINB8	ENST00000353706	human	ensembl	74_37	+1	known	nonsense	c.405	p.W135*	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB8	HGNC	ENSG00000166401				149	0	0	146	11	7.00637
TMX3	0	genome.wustl.edu	37	18	66350180	66350180	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	66350180	66350180	A	G	SNP	TMX3	ENST00000299608	human	ensembl	74_37	-1	known	missense	c.887	p.I296T	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	TMX3	HGNC	ENSG00000166479				136	0	0	160	17	9.60452
LAMA1	0	genome.wustl.edu	37	18	6999505	6999505	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	6999505	6999505	G	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.4602	p.A1534	0.023	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				34	0	0	32	17	34.6939
CBLN2	0	genome.wustl.edu	37	18	70205584	70205584	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	70205584	70205584	G	T	SNP	CBLN2	ENST00000269503	human	ensembl	74_37	-1	known	missense	c.502	p.P168T	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN2	HGNC	ENSG00000141668				85	0	0	67	7	9.45946
FBXO15	0	genome.wustl.edu	37	18	71740785	71740785	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	71740785	71740785	T	A	SNP	FBXO15	ENST00000419743	human	ensembl	74_37	-1	known	missense	c.1444	p.I482F	0.874	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO15	HGNC	ENSG00000141665				245	1	0.406504	194	16	7.61905
PTPRM	0	genome.wustl.edu	37	18	7567873	7567873	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	7567873	7567873	G	A	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	silent	c.57	p.A19	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				61	0	0	53	17	24.2857
SALL3	0	genome.wustl.edu	37	18	76754750	76754750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	76754750	76754750	C	T	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.2759	p.P920L	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				15	0	0	15	8	34.7826
SOGA2	0	genome.wustl.edu	37	18	8720350	8720350	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	8720350	8720350	A	G	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	silent	c.213	p.V71	0.678	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				112	0	0	87	9	9.375
VAPA	0	genome.wustl.edu	37	18	9944964	9944964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	9944964	9944964	G	A	SNP	VAPA	ENST00000340541	human	ensembl	74_37	+1	known	missense	c.461	p.S154N	0.984	pirsf_Vesicle-associated_membrane	pfam_MSP_dom,superfamily_PapD-like,pirsf_Vesicle-associated_membrane,pfscan_MSP_dom	-	no_errors	VAPA	HGNC	ENSG00000101558				104	0	0	87	19	17.9245
TMEM259	0	genome.wustl.edu	37	19	1012464	1012464	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	1012464	1012464	A	G	SNP	TMEM259	ENST00000356663	human	ensembl	74_37	-1	known	missense	c.716	p.L239P	1.000	pfam_Membralin	pfam_Membralin	-	no_errors	TMEM259	HGNC	ENSG00000182087				17	0	0	13	2	13.3333
ANGPTL6	0	genome.wustl.edu	37	19	10203376	10203376	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	10203376	10203376	G	A	SNP	ANGPTL6	ENST00000253109	human	ensembl	74_37	-1	known	silent	c.1302	p.H434	0.065	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL6	HGNC	ENSG00000130812				58	0	0	45	15	25
TYK2	0	genome.wustl.edu	37	19	10463616	10463616	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	10463616	10463616	G	A	SNP	TYK2	ENST00000264818	human	ensembl	74_37	-1	known	silent	c.3186	p.D1062	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397				84	0	0	81	9	10
KEAP1	0	genome.wustl.edu	37	19	10610476	10610476	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	10610476	10610476	G	A	SNP	KEAP1	ENST00000171111	human	ensembl	74_37	-1	known	silent	c.234	p.D78	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999				66	0	0	36	9	20
POLR2E	0	genome.wustl.edu	37	19	1095303	1095303	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	1095303	1095303	C	G	SNP	POLR2E	ENST00000215587	human	ensembl	74_37	-1	known	missense	c.12	p.E4D	1.000	pfam_RNA_pol_Rpb5_N,superfamily_RNA_pol_Rpb5_N,pirsf_DNA_RNA_pol_RPB5_euk/virus	pfam_RNA_pol_subH/Rpb5_C,pfam_RNA_pol_Rpb5_N,superfamily_RNA_pol_Rpb5_N,superfamily_RNA_pol_subH/Rpb5_C,pirsf_DNA_RNA_pol_RPB5_euk/virus	-	no_errors	POLR2E	HGNC	ENSG00000099817				84	0	0	58	7	10.7692
SMARCA4	0	genome.wustl.edu	37	19	11096047	11096047	+	Silent	SNP	G	G	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	11096047	11096047	G	C	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	silent	c.321	p.G107	0.998	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				33	0	0	35	2	5.40541
DOCK6	0	genome.wustl.edu	37	19	11313233	11313233	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	11313233	11313233	G	A	SNP	DOCK6	ENST00000586702	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DOCK6	HGNC	ENSG00000130158				227	0	0	139	51	26.8421
TSPAN16	0	genome.wustl.edu	37	19	11408917	11408917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	11408917	11408917	G	A	SNP	TSPAN16	ENST00000316737	human	ensembl	74_37	+1	known	missense	c.169	p.V57I	0.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN16	HGNC	ENSG00000130167				94	0	0	78	27	25.7143
LPPR2	0	genome.wustl.edu	37	19	11471930	11471930	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	11471930	11471930	C	T	SNP	LPPR2	ENST00000591608	human	ensembl	74_37	+1	known	silent	c.354	p.F118	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	DKFZP761J1410	Uniprot_gn	ENSG00000105520				87	0	0	42	19	31.1475
ACP5	0	genome.wustl.edu	37	19	11687099	11687099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	11687099	11687099	C	T	SNP	ACP5	ENST00000218758	human	ensembl	74_37	-1	known	missense	c.694	p.G232R	0.972	pfam_PEstase_dom	pfam_PEstase_dom	-	no_errors	ACP5	HGNC	ENSG00000102575				57	0	0	30	4	11.7647
MAN2B1	0	genome.wustl.edu	37	19	12769060	12769060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	12769060	12769060	C	T	SNP	MAN2B1	ENST00000456935	human	ensembl	74_37	-1	known	missense	c.1208	p.R403H	1.000	pfam_Glyco_hydro_38_cen_dom,smart_Glyco_hydro_38_cen_dom	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774				65	0	0	47	22	31.8841
ZSWIM4	0	genome.wustl.edu	37	19	13919924	13919924	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	13919924	13919924	G	A	SNP	ZSWIM4	ENST00000254323	human	ensembl	74_37	+1	known	missense	c.902	p.R301H	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003				83	0	0	96	13	11.9266
LPHN1	0	genome.wustl.edu	37	19	14269224	14269224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	14269224	14269224	C	T	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.2305	p.A769T	0.879	pfam_DUF3497	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				84	0	0	70	6	7.89474
CCDC105	0	genome.wustl.edu	37	19	15132166	15132166	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	15132166	15132166	G	A	SNP	CCDC105	ENST00000292574	human	ensembl	74_37	+1	known	silent	c.876	p.A292	0.946	pfam_Tektin	pfam_Tektin	-	no_errors	CCDC105	HGNC	ENSG00000160994				19	0	0	17	6	26.087
CYP4F2	0	genome.wustl.edu	37	19	16000370	16000370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	16000370	16000370	G	A	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	missense	c.781	p.R261C	0.283	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115				134	0	0	121	19	13.5714
CYP4F11	0	genome.wustl.edu	37	19	16040401	16040401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	16040401	16040401	G	A	SNP	CYP4F11	ENST00000248041	human	ensembl	74_37	-1	known	missense	c.209	p.T70M	0.001	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903				122	0	0	109	14	11.3821
MED26	0	genome.wustl.edu	37	19	16688383	16688383	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	16688383	16688383	C	T	SNP	MED26	ENST00000263390	human	ensembl	74_37	-1	known	silent	c.258	p.P86	0.010	superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	MED26	HGNC	ENSG00000105085				38	0	0	31	10	24.3902
TMEM38A	0	genome.wustl.edu	37	19	16791318	16791318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	16791318	16791318	C	T	SNP	TMEM38A	ENST00000187762	human	ensembl	74_37	+1	known	missense	c.392	p.A131V	1.000	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38A	HGNC	ENSG00000072954				175	1	0.568182	127	15	10.5634
HAUS8	0	genome.wustl.edu	37	19	17179875	17179875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	17179875	17179875	C	T	SNP	HAUS8	ENST00000253669	human	ensembl	74_37	-1	known	missense	c.113	p.R38Q	0.914	NULL	NULL	-	no_errors	HAUS8	HGNC	ENSG00000131351				28	0	0	26	4	13.3333
B3GNT3	0	genome.wustl.edu	37	19	17922546	17922546	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	17922546	17922546	T	C	SNP	B3GNT3	ENST00000318683	human	ensembl	74_37	+1	known	missense	c.734	p.I245T	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT3	HGNC	ENSG00000179913				97	0	0	72	5	6.49351
UPF1	0	genome.wustl.edu	37	19	18967788	18967788	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	18967788	18967788	G	A	SNP	UPF1	ENST00000599848	human	ensembl	74_37	+1	known	missense	c.1960	p.E654K	1.000	superfamily_P-loop_NTPase	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase	-	no_errors	UPF1	HGNC	ENSG00000005007				119	0	0	111	11	9.01639
DDX49	0	genome.wustl.edu	37	19	19035782	19035782	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	19035782	19035782	C	A	SNP	DDX49	ENST00000247003	human	ensembl	74_37	+1	known	missense	c.1021	p.R341S	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX49	HGNC	ENSG00000105671				37	0	0	28	12	30
SUGP2	0	genome.wustl.edu	37	19	19112469	19112469	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	19112469	19112469	G	A	SNP	SUGP2	ENST00000337018	human	ensembl	74_37	-1	known	nonsense	c.2944	p.R982*	1.000	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP2	HGNC	ENSG00000064607				72	0	0	70	4	5.40541
NCAN	0	genome.wustl.edu	37	19	19360629	19360629	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	19360629	19360629	A	G	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.3875	p.Q1292R	1.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				62	0	0	46	9	16.3636
GATAD2A	0	genome.wustl.edu	37	19	19609410	19609410	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	19609410	19609410	C	T	SNP	GATAD2A	ENST00000358713	human	ensembl	74_37	+1	known	silent	c.1083	p.L361	0.969	NULL	pfam_Znf_GATA,pfscan_Znf_GATA	-	no_errors	GATAD2A	HGNC	ENSG00000167491				22	0	0	31	2	6.06061
ZNF43	0	genome.wustl.edu	37	19	22000730	22000730	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	22000730	22000730	C	A	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	missense	c.189	p.W63C	0.176	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				114	0	0	124	7	5.34351
LOC440518	0	genome.wustl.edu	37	19	22785471	22785471	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	22785471	22785471	C	T	SNP	LOC440518	ENST00000600260	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTC-457E21.3	Clone_based_vega_gene	ENSG00000269332				100	0	0	82	19	18.8119
LINGO3	0	genome.wustl.edu	37	19	2290137	2290137	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	2290137	2290137	C	T	SNP	LINGO3	ENST00000404279	human	ensembl	74_37	-1	known	missense	c.1639	p.V547M	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO3	HGNC	ENSG00000220008				33	0	0	15	7	31.8182
TLE6	0	genome.wustl.edu	37	19	2991927	2991927	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	2991927	2991927	G	T	SNP	TLE6	ENST00000246112	human	ensembl	74_37	+1	known	missense	c.1331	p.R444L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE6	HGNC	ENSG00000104953				77	0	0	48	17	26.1538
TLE2	0	genome.wustl.edu	37	19	3005947	3005947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	3005947	3005947	C	T	SNP	TLE2	ENST00000262953	human	ensembl	74_37	-1	known	missense	c.1520	p.R507H	0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717				57	0	0	40	15	27.2727
SLC7A9	0	genome.wustl.edu	37	19	33353425	33353425	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	33353425	33353425	C	T	SNP	SLC7A9	ENST00000023064	human	ensembl	74_37	-1	known	silent	c.546	p.A182	0.076	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A9	HGNC	ENSG00000021488				69	0	0	38	17	30.9091
CHST8	0	genome.wustl.edu	37	19	34263385	34263385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	34263385	34263385	G	A	SNP	CHST8	ENST00000262622	human	ensembl	74_37	+1	known	missense	c.692	p.S231N	0.844	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST8	HGNC	ENSG00000124302				87	0	0	45	10	18.1818
HPN	0	genome.wustl.edu	37	19	35550829	35550829	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	35550829	35550829	G	A	SNP	HPN	ENST00000262626	human	ensembl	74_37	+1	known	silent	c.342	p.T114	0.629	pfam_Hepsin-SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel	pfam_Peptidase_S1,pfam_Hepsin-SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HPN	HGNC	ENSG00000105707				12	0	0	6	6	50
MAG	0	genome.wustl.edu	37	19	35800865	35800865	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	35800865	35800865	G	A	SNP	MAG	ENST00000392213	human	ensembl	74_37	+1	known	silent	c.1320	p.P440	0.000	NULL	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MAG	HGNC	ENSG00000105695				137	0	0	105	7	6.25
KMT2B	0	genome.wustl.edu	37	19	36223564	36223564	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	36223564	36223564	T	C	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	silent	c.6114	p.P2038	0.997	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				23	0	0	28	2	6.66667
U2AF1L4	0	genome.wustl.edu	37	19	36235042	36235042	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	36235042	36235042	C	A	SNP	U2AF1L4	ENST00000412391	human	ensembl	74_37	-1	known	missense	c.353	p.R118L	0.988	pfam_RRM_dom,smart_RRM_dom_euk,prints_U2_small,pfscan_RRM_dom	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,prints_U2_small,pfscan_RRM_dom	-	no_errors	U2AF1L4	HGNC	ENSG00000161265				54	0	0	28	10	26.3158
ARHGAP33	0	genome.wustl.edu	37	19	36278199	36278199	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	36278199	36278199	T	C	SNP	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	missense	c.2732	p.V911A	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777				51	0	0	40	19	32.2034
WDR62	0	genome.wustl.edu	37	19	36593955	36593955	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	36593955	36593955	C	T	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	silent	c.3441	p.Y1147	0.293	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				37	0	0	33	4	10.8108
ZNF146	0	genome.wustl.edu	37	19	36727780	36727780	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	36727780	36727780	T	C	SNP	ZNF146	ENST00000443387	human	ensembl	74_37	+1	known	silent	c.438	p.H146	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF146	HGNC	ENSG00000167635				89	0	0	85	7	7.6087
ZNF345	0	genome.wustl.edu	37	19	37367968	37367968	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	37367968	37367968	G	A	SNP	ZNF345	ENST00000420450	human	ensembl	74_37	+1	known	missense	c.236	p.R79Q	0.005	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF345	HGNC	ENSG00000251247				55	0	0	38	16	29.6296
ZNF569	0	genome.wustl.edu	37	19	37903706	37903706	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	37903706	37903706	G	T	SNP	ZNF569	ENST00000316950	human	ensembl	74_37	-1	known	missense	c.1854	p.S618R	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437				78	0	0	74	22	22.9167
PAPL	0	genome.wustl.edu	37	19	39589701	39589701	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	39589701	39589701	C	A	SNP	PAPL	ENST00000331256	human	ensembl	74_37	+1	known	missense	c.424	p.L142M	1.000	pfam_PEstase_dom	pfam_PEstase_dom,superfamily_Purple_acid_Pase-like_N	-	no_errors	PAPL	Uniprot_gn	ENSG00000183760				60	0	0	73	4	5.19481
EEF2	0	genome.wustl.edu	37	19	3977944	3977944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	3977944	3977944	C	T	SNP	EEF2	ENST00000309311	human	ensembl	74_37	-1	known	missense	c.1940	p.R647H	0.997	pfam_Transl_elong_EFG/EF2_IV,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658				66	0	0	34	18	34.6154
ZNF780B	0	genome.wustl.edu	37	19	40541822	40541822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	40541822	40541822	C	T	SNP	ZNF780B	ENST00000434248	human	ensembl	74_37	-1	known	missense	c.944	p.R315Q	0.023	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000				104	0	0	116	9	7.2
ADCK4	0	genome.wustl.edu	37	19	41209479	41209479	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	41209479	41209479	C	T	SNP	ADCK4	ENST00000324464	human	ensembl	74_37	-1	known	missense	c.766	p.A256T	0.999	pfam_UbiB_dom,superfamily_Kinase-like_dom	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK4	HGNC	ENSG00000123815				50	0	0	46	6	11.5385
CYP2F1	0	genome.wustl.edu	37	19	41630643	41630643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	41630643	41630643	C	T	SNP	CYP2F1	ENST00000532164	human	ensembl	74_37	+1	known	missense	c.926	p.S309L	0.882	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_CYP2_fam	-	no_errors	CYP2F1	HGNC	ENSG00000197446				26	0	0	24	5	17.2414
CYP2S1	0	genome.wustl.edu	37	19	41700534	41700534	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	41700534	41700534	G	A	SNP	CYP2S1	ENST00000310054	human	ensembl	74_37	+1	known	missense	c.263	p.R88Q	0.010	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600				70	0	0	49	11	18.3333
CD79A	0	genome.wustl.edu	37	19	42383351	42383351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	42383351	42383351	G	A	SNP	CD79A	ENST00000221972	human	ensembl	74_37	+1	known	missense	c.371	p.R124H	0.851	smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Phos_immunorcpt_sig_ITAM,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM,pfscan_Ig-like_dom	-	no_errors	CD79A	HGNC	ENSG00000105369				39	0	0	21	5	19.2308
ATP1A3	0	genome.wustl.edu	37	19	42489240	42489240	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	42489240	42489240	C	T	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	missense	c.823	p.A275T	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				26	0	0	27	3	10
MEGF8	0	genome.wustl.edu	37	19	42880243	42880243	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	42880243	42880243	C	T	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	silent	c.7854	p.G2618	0.677	NULL	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				54	0	0	41	16	28.0702
PSG1	0	genome.wustl.edu	37	19	43376071	43376071	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	43376071	43376071	C	T	SNP	PSG1	ENST00000312439	human	ensembl	74_37	-1	known	missense	c.557	p.S186N	0.023	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG1	HGNC	ENSG00000231924				296	0	0	241	83	25.6173
CD177	0	genome.wustl.edu	37	19	43859890	43859890	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	43859890	43859890	A	G	SNP	CD177	ENST00000378009	human	ensembl	74_37	+1	known	missense	c.457	p.K153E	0.000	pfam_LY6_UPAR	pfam_LY6_UPAR	-	no_errors	CD177	HGNC	ENSG00000204936				55	0	0	34	12	26.087
XRCC1	0	genome.wustl.edu	37	19	44057061	44057061	+	Splice_Site	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	44057061	44057061	C	A	SNP	XRCC1	ENST00000262887	human	ensembl	74_37	-1	known	splice_site	c.712-1	e8-1	0.981	-	-	-	no_errors	XRCC1	HGNC	ENSG00000073050				16	0	0	16	3	15.7895
ZNF155	0	genome.wustl.edu	37	19	44500799	44500799	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	44500799	44500799	G	T	SNP	ZNF155	ENST00000270014	human	ensembl	74_37	+1	known	missense	c.790	p.A264S	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF155	HGNC	ENSG00000204920				136	0	0	148	20	11.9048
CEACAM19	0	genome.wustl.edu	37	19	45179597	45179597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	45179597	45179597	C	T	SNP	CEACAM19	ENST00000403660	human	ensembl	74_37	+1	known	missense	c.479	p.A160V	0.000	NULL	pfam_Ig_V-set	-	no_errors	CEACAM19	HGNC	ENSG00000186567				61	0	0	60	24	28.5714
GIPR	0	genome.wustl.edu	37	19	46176148	46176148	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	46176148	46176148	G	A	SNP	GIPR	ENST00000590918	human	ensembl	74_37	+1	known	missense	c.320	p.G107D	1.000	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,prints_GPCR_2_GIP_rcpt,prints_GPCR_2_secretin-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	GIPR	HGNC	ENSG00000010310				60	0	0	56	9	13.8462
DMPK	0	genome.wustl.edu	37	19	46280967	46280967	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	46280967	46280967	C	T	SNP	DMPK	ENST00000343373	human	ensembl	74_37	-1	known	silent	c.870	p.A290	0.236	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	DMPK	HGNC	ENSG00000104936				183	0	0	144	15	9.43396
ARHGAP35	0	genome.wustl.edu	37	19	47422062	47422062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	47422062	47422062	C	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	missense	c.130	p.R44C	1.000	superfamily_P-loop_NTPase	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007				60	0	0	85	7	7.6087
BCAT2	0	genome.wustl.edu	37	19	49303347	49303347	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	49303347	49303347	T	G	SNP	BCAT2	ENST00000316273	human	ensembl	74_37	-1	known	missense	c.422	p.K141T	1.000	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552				73	0	0	71	4	5.33333
PPFIA3	0	genome.wustl.edu	37	19	49642973	49642973	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	49642973	49642973	G	A	SNP	PPFIA3	ENST00000334186	human	ensembl	74_37	+1	known	missense	c.2125	p.A709T	0.975	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380				65	0	0	57	19	25
PRR12	0	genome.wustl.edu	37	19	50099565	50099565	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	50099565	50099565	C	T	SNP	PRR12	ENST00000418929	human	ensembl	74_37	+1	novel	missense	c.1973	p.A658V	0.906	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464				20	0	0	11	8	42.1053
PRMT1	0	genome.wustl.edu	37	19	50189959	50189959	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	50189959	50189959	C	T	SNP	PRMT1	ENST00000454376	human	ensembl	74_37	+1	known	silent	c.1008	p.G336	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT1	HGNC	ENSG00000126457				89	0	0	68	6	8.10811
PRMT1	0	genome.wustl.edu	37	19	50191558	50191558	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	50191558	50191558	C	T	SNP	PRMT1	ENST00000527866	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PRMT1	HGNC	ENSG00000126457				24	0	0	21	8	27.5862
TSKS	0	genome.wustl.edu	37	19	50249873	50249873	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	50249873	50249873	G	A	SNP	TSKS	ENST00000246801	human	ensembl	74_37	-1	known	silent	c.846	p.C282	0.593	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467				45	0	0	33	12	26.6667
KDM4B	0	genome.wustl.edu	37	19	5032920	5032920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	5032920	5032920	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.19	p.G7S	0.602	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				104	0	0	65	24	26.9663
MYH14	0	genome.wustl.edu	37	19	50794294	50794294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	50794294	50794294	C	T	SNP	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	missense	c.5116	p.R1706C	0.836	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357				21	0	0	24	9	27.2727
POLD1	0	genome.wustl.edu	37	19	50910265	50910265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	50910265	50910265	G	A	SNP	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	missense	c.1520	p.R507H	1.000	superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822				194	0	0	146	14	8.75
LRRC4B	0	genome.wustl.edu	37	19	51021034	51021034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	51021034	51021034	C	T	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.1936	p.G646R	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				14	0	0	11	6	35.2941
GPR32	0	genome.wustl.edu	37	19	51273872	51273872	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	51273872	51273872	G	A	SNP	GPR32	ENST00000270590	human	ensembl	74_37	+1	known	silent	c.15	p.S5	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	GPR32	HGNC	ENSG00000142511				40	0	0	17	3	15
KDM4B	0	genome.wustl.edu	37	19	5131974	5131974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	5131974	5131974	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.1862	p.R621Q	0.994	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				19	0	0	9	3	25
KLK15	0	genome.wustl.edu	37	19	51330229	51330229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	51330229	51330229	G	A	SNP	KLK15	ENST00000598239	human	ensembl	74_37	-1	known	missense	c.386	p.T129M	0.005	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK15	HGNC	ENSG00000174562				55	0	0	47	28	37.3333
SIGLEC5	0	genome.wustl.edu	37	19	52130718	52130718	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	52130718	52130718	G	T	SNP	SIGLEC5	ENST00000222107	human	ensembl	74_37	-1	known	missense	c.1279	p.Q427K	0.913	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC5	HGNC	ENSG00000105501				204	0	0	139	53	27.6042
PTPRS	0	genome.wustl.edu	37	19	5214592	5214592	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	5214592	5214592	G	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.4477	p.R1493W	0.271	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				57	0	0	33	11	25
ZNF350	0	genome.wustl.edu	37	19	52469195	52469195	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	52469195	52469195	G	A	SNP	ZNF350	ENST00000243644	human	ensembl	74_37	-1	known	nonsense	c.511	p.R171*	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF350	HGNC	ENSG00000256683				124	0	0	105	27	20.4545
ZNF616	0	genome.wustl.edu	37	19	52618898	52618898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	52618898	52618898	G	A	SNP	ZNF616	ENST00000600228	human	ensembl	74_37	-1	known	missense	c.1519	p.R507C	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611				119	0	0	126	24	16
ZNF616	0	genome.wustl.edu	37	19	52620202	52620202	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	52620202	52620202	A	G	SNP	ZNF616	ENST00000600228	human	ensembl	74_37	-1	known	missense	c.215	p.V72A	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611				79	0	0	64	10	13.5135
ZNF83	0	genome.wustl.edu	37	19	53116634	53116634	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	53116634	53116634	T	C	SNP	ZNF83	ENST00000301096	human	ensembl	74_37	-1	known	missense	c.1184	p.H395R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF83	HGNC	ENSG00000167766				99	0	0	106	11	9.40171
ZNF320	0	genome.wustl.edu	37	19	53367219	53367219	+	RNA	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	53367219	53367219	A	G	SNP	ZNF320	ENST00000595202	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	ZNF320	HGNC	ENSG00000182986				21	0	0	29	5	14.7059
MIR515-1	0	genome.wustl.edu	37	19	54182284	54182284	+	RNA	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	54182284	54182284	G	T	SNP	MIR515-1	ENST00000384884	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	MIR515-1	HGNC	ENSG00000207616				43	0	0	33	5	13.1579
LILRA5	0	genome.wustl.edu	37	19	54822903	54822903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	54822903	54822903	G	A	SNP	LILRA5	ENST00000301219	human	ensembl	74_37	-1	known	missense	c.493	p.R165W	0.000	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2	-	no_errors	LILRA5	HGNC	ENSG00000187116				84	0	0	81	7	7.95455
LILRA4	0	genome.wustl.edu	37	19	54848764	54848764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	54848764	54848764	G	A	SNP	LILRA4	ENST00000291759	human	ensembl	74_37	-1	known	missense	c.859	p.R287C	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA4	HGNC	ENSG00000239961				56	0	0	37	15	28.8462
FCAR	0	genome.wustl.edu	37	19	55401033	55401033	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	55401033	55401033	A	G	SNP	FCAR	ENST00000355524	human	ensembl	74_37	+1	known	missense	c.668	p.Y223C	0.064	NULL	smart_Ig_sub	-	no_errors	FCAR	HGNC	ENSG00000186431				639	1	0.15625	489	41	7.73585
ZNF628	0	genome.wustl.edu	37	19	55993235	55993235	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	55993235	55993235	G	A	SNP	ZNF628	ENST00000598519	human	ensembl	74_37	+1	known	silent	c.675	p.T225	0.152	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483				12	0	0	1	5	83.3333
U2AF2	0	genome.wustl.edu	37	19	56166473	56166473	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	56166473	56166473	G	A	SNP	U2AF2	ENST00000308924	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_U2AF_lg	-	no_errors	U2AF2	HGNC	ENSG00000063244				34	0	0	34	5	12.8205
ZNF787	0	genome.wustl.edu	37	19	56599515	56599515	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	56599515	56599515	G	A	SNP	ZNF787	ENST00000270459	human	ensembl	74_37	-1	known	silent	c.1026	p.G342	0.779	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF787	HGNC	ENSG00000142409				28	0	0	22	4	15.3846
ZNF71	0	genome.wustl.edu	37	19	57133439	57133439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	57133439	57133439	C	T	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	missense	c.784	p.R262C	0.666	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				87	0	0	47	10	17.5439
ZIM2	0	genome.wustl.edu	37	19	57286450	57286450	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	57286450	57286450	G	T	SNP	ZIM2	ENST00000221722	human	ensembl	74_37	-1	known	missense	c.1190	p.A397E	0.000	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM2	HGNC	ENSG00000269699				49	0	0	44	9	16.9811
PEG3	0	genome.wustl.edu	37	19	57325987	57325987	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	57325987	57325987	T	G	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.3823	p.S1275R	0.272	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				27	0	0	47	3	6
ZNF805	0	genome.wustl.edu	37	19	57765778	57765778	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	57765778	57765778	A	G	SNP	ZNF805	ENST00000414468	human	ensembl	74_37	+1	known	missense	c.1591	p.I531V	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524				72	0	0	71	5	6.57895
ZNF543	0	genome.wustl.edu	37	19	57840273	57840273	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	57840273	57840273	C	T	SNP	ZNF543	ENST00000321545	human	ensembl	74_37	+1	known	silent	c.1443	p.C481	0.307	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229				112	0	0	74	8	9.7561
ENSG00000268230	0	genome.wustl.edu	37	19	58867479	58867479	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	58867479	58867479	G	A	SNP	ENSG00000268230	ENST00000600123	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CTD-2619J13.8	Clone_based_vega_gene	ENSG00000268230				19	0	0	7	6	46.1538
ZBTB45	0	genome.wustl.edu	37	19	59028928	59028928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	59028928	59028928	C	T	SNP	ZBTB45	ENST00000354590	human	ensembl	74_37	-1	known	missense	c.113	p.R38H	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB45	HGNC	ENSG00000119574				92	0	0	31	14	31.1111
RFX2	0	genome.wustl.edu	37	19	6042100	6042100	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	6042100	6042100	A	G	SNP	RFX2	ENST00000303657	human	ensembl	74_37	-1	known	missense	c.215	p.V72A	1.000	pfam_RFX1_trans_act	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX2	HGNC	ENSG00000087903				133	0	0	84	19	18.4466
PRSS57	0	genome.wustl.edu	37	19	691994	691994	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	691994	691994	C	T	SNP	PRSS57	ENST00000329267	human	ensembl	74_37	-1	known	missense	c.245	p.R82H	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS57	HGNC	ENSG00000185198				18	0	0	7	3	30
MCOLN1	0	genome.wustl.edu	37	19	7591468	7591468	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	7591468	7591468	G	T	SNP	MCOLN1	ENST00000264079	human	ensembl	74_37	+1	known	missense	c.381	p.Q127H	0.995	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674				113	0	0	89	34	27.6423
CAMSAP3	0	genome.wustl.edu	37	19	7675435	7675435	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	7675435	7675435	C	A	SNP	CAMSAP3	ENST00000446248	human	ensembl	74_37	+1	known	silent	c.915	p.A305	0.643	pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP3	HGNC	ENSG00000076826				257	0	0	162	50	23.5849
ELAVL1	0	genome.wustl.edu	37	19	8038749	8038749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	8038749	8038749	C	T	SNP	ELAVL1	ENST00000351593	human	ensembl	74_37	-1	known	missense	c.371	p.R124H	1.000	pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044				70	0	0	52	4	7.14286
MYO1F	0	genome.wustl.edu	37	19	8595150	8595150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	8595150	8595150	C	T	SNP	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	missense	c.2258	p.R753H	0.999	pfam_Myosin_tail_2,superfamily_P-loop_NTPase	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				320	0	0	245	25	9.25926
ACTL9	0	genome.wustl.edu	37	19	8807821	8807821	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	8807821	8807821	C	T	SNP	ACTL9	ENST00000324436	human	ensembl	74_37	-1	known	missense	c.1231	p.V411M	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL9	HGNC	ENSG00000181786				117	0	0	78	18	18.75
R3HDM4	0	genome.wustl.edu	37	19	902066	902066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	902066	902066	G	A	SNP	R3HDM4	ENST00000361574	human	ensembl	74_37	-1	known	missense	c.136	p.R46W	1.000	NULL	pfscan_R3H_ss-bd	-	no_errors	R3HDM4	HGNC	ENSG00000198858				91	0	0	91	18	16.5138
OR7D2	0	genome.wustl.edu	37	19	9296577	9296577	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	9296577	9296577	G	A	SNP	OR7D2	ENST00000344248	human	ensembl	74_37	+1	known	silent	c.120	p.L40	0.000	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D2	HGNC	ENSG00000188000				88	0	0	88	25	22.1239
ZNF699	0	genome.wustl.edu	37	19	9406947	9406947	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	9406947	9406947	A	G	SNP	ZNF699	ENST00000308650	human	ensembl	74_37	-1	known	missense	c.1133	p.L378P	0.503	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF699	HGNC	ENSG00000196110				64	0	0	71	7	8.97436
ZNF426	0	genome.wustl.edu	37	19	9639131	9639131	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	9639131	9639131	T	G	SNP	ZNF426	ENST00000253115	human	ensembl	74_37	-1	known	missense	c.1590	p.K530N	0.512	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Znf_C2H2_jaz,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF426	HGNC	ENSG00000130818				63	0	0	51	7	12.069
NCK2	0	genome.wustl.edu	37	2	106498353	106498353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	106498353	106498353	G	A	SNP	NCK2	ENST00000233154	human	ensembl	74_37	+1	known	missense	c.796	p.A266T	0.433	superfamily_SH3_domain,pirsf_Cytoplasmic_NCK	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK2	HGNC	ENSG00000071051				42	0	0	31	6	16.2162
POLR1B	0	genome.wustl.edu	37	2	113332680	113332680	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	113332680	113332680	A	G	SNP	POLR1B	ENST00000541869	human	ensembl	74_37	+1	known	missense	c.2896	p.M966V	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630				126	0	0	128	13	9.21986
GREB1	0	genome.wustl.edu	37	2	11706636	11706636	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	11706636	11706636	T	G	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.308	p.L103R	0.990	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				53	0	0	58	5	7.93651
GREB1	0	genome.wustl.edu	37	2	11774326	11774326	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	11774326	11774326	C	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	silent	c.5061	p.D1687	0.749	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				122	0	0	82	28	25.4545
TFCP2L1	0	genome.wustl.edu	37	2	121997199	121997199	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	121997199	121997199	G	A	SNP	TFCP2L1	ENST00000263707	human	ensembl	74_37	-1	known	silent	c.795	p.Y265	1.000	NULL	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2L1	HGNC	ENSG00000115112				82	0	0	62	8	11.4286
CLASP1	0	genome.wustl.edu	37	2	122215303	122215303	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	122215303	122215303	T	C	SNP	CLASP1	ENST00000263710	human	ensembl	74_37	-1	known	missense	c.1345	p.I449V	1.000	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054				49	0	0	58	5	7.93651
POTEF	0	genome.wustl.edu	37	2	130832416	130832416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	130832416	130832416	G	A	SNP	POTEF	ENST00000357462	human	ensembl	74_37	-1	known	missense	c.2629	p.R877C	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEF	HGNC	ENSG00000196604				49	0	0	45	9	16.6667
POTEE	0	genome.wustl.edu	37	2	131976274	131976274	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	131976274	131976274	A	C	SNP	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	missense	c.299	p.K100T	0.047	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219				61	0	0	47	5	9.61538
GPR39	0	genome.wustl.edu	37	2	133403128	133403128	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	133403128	133403128	G	A	SNP	GPR39	ENST00000329321	human	ensembl	74_37	+1	known	silent	c.1311	p.A437	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840				104	0	0	82	6	6.81818
LCT	0	genome.wustl.edu	37	2	136566490	136566490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	136566490	136566490	C	T	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	missense	c.3427	p.A1143T	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				64	0	0	51	16	23.8806
KYNU	0	genome.wustl.edu	37	2	143715236	143715236	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	143715236	143715236	T	C	SNP	KYNU	ENST00000264170	human	ensembl	74_37	+1	known	silent	c.534	p.L178	0.989	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919				75	0	0	56	24	30
ZEB2	0	genome.wustl.edu	37	2	145157300	145157300	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	145157300	145157300	T	G	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.1454	p.K485T	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				62	0	0	81	9	10
RIF1	0	genome.wustl.edu	37	2	152324542	152324542	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	152324542	152324542	T	C	SNP	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	missense	c.6629	p.I2210T	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				88	0	0	90	10	10
NR4A2	0	genome.wustl.edu	37	2	157182339	157182339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	157182339	157182339	G	A	SNP	NR4A2	ENST00000539077	human	ensembl	74_37	-1	known	missense	c.1747	p.R583C	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Nuc_orph_rcpt,prints_Retinoic_acid_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NURR_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A2	HGNC	ENSG00000153234				93	0	0	77	22	22.2222
FIGN	0	genome.wustl.edu	37	2	164467599	164467599	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	164467599	164467599	G	A	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	missense	c.743	p.P248L	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263				62	0	0	33	3	8.33333
CSRNP3	0	genome.wustl.edu	37	2	166535234	166535234	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	166535234	166535234	C	T	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	silent	c.729	p.C243	0.993	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				66	0	0	66	7	9.58904
XIRP2	0	genome.wustl.edu	37	2	168105930	168105930	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	168105930	168105930	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	silent	c.8028	p.K2676	0.309	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				63	0	0	57	5	8.06452
LRP2	0	genome.wustl.edu	37	2	170063685	170063685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	170063685	170063685	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.6545	p.R2182H	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				77	0	0	80	7	8.04598
LRP2	0	genome.wustl.edu	37	2	170103435	170103435	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	170103435	170103435	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	silent	c.2970	p.P990	0.255	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				47	0	0	58	6	9.375
GORASP2	0	genome.wustl.edu	37	2	171807902	171807902	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	171807902	171807902	A	G	SNP	GORASP2	ENST00000452526	human	ensembl	74_37	+1	known	missense	c.536	p.N179S	1.000	pfam_GRASP55/65_PDZ,superfamily_PDZ	pfam_GRASP55/65_PDZ,superfamily_PDZ	-	no_errors	GORASP2	HGNC	ENSG00000115806				75	0	0	74	8	9.7561
HAT1	0	genome.wustl.edu	37	2	172844276	172844276	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	172844276	172844276	G	T	SNP	HAT1	ENST00000264108	human	ensembl	74_37	+1	known	missense	c.1092	p.K364N	1.000	pirsf_Hist_AcTrfase_B-typ_cat-su	pfam_Hat1_N,superfamily_Acyl_CoA_acyltransferase,pirsf_Hist_AcTrfase_B-typ_cat-su	-	no_errors	HAT1	HGNC	ENSG00000128708				58	0	0	47	5	9.61538
SCRN3	0	genome.wustl.edu	37	2	175263039	175263039	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	175263039	175263039	G	A	SNP	SCRN3	ENST00000272732	human	ensembl	74_37	+1	known	missense	c.28	p.V10M	1.000	NULL	pfam_Peptidase_C69	-	no_errors	SCRN3	HGNC	ENSG00000144306				75	0	0	75	8	9.63855
EVX2	0	genome.wustl.edu	37	2	176945561	176945561	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	176945561	176945561	C	T	SNP	EVX2	ENST00000308618	human	ensembl	74_37	-1	known	nonsense	c.705	p.W235*	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1,prints_Homeobox_metazoa	-	no_errors	EVX2	HGNC	ENSG00000174279				32	0	0	22	4	15.3846
HOXD3	0	genome.wustl.edu	37	2	177036780	177036780	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	177036780	177036780	C	T	SNP	HOXD3	ENST00000249440	human	ensembl	74_37	+1	known	silent	c.1077	p.G359	0.113	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD3	HGNC	ENSG00000128652				17	0	0	11	6	35.2941
HOXD1	0	genome.wustl.edu	37	2	177054563	177054563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	177054563	177054563	G	A	SNP	HOXD1	ENST00000331462	human	ensembl	74_37	+1	known	missense	c.680	p.S227N	0.953	superfamily_Homeodomain-like,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD1	HGNC	ENSG00000128645				120	0	0	119	8	6.29921
TTN	0	genome.wustl.edu	37	2	179430621	179430621	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	179430621	179430621	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.72534	p.N24178	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				107	0	0	128	11	7.91367
TTN	0	genome.wustl.edu	37	2	179438533	179438533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	179438533	179438533	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.64622	p.G21541D	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				46	0	0	40	17	29.8246
TTN	0	genome.wustl.edu	37	2	179440424	179440424	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	179440424	179440424	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.62731	p.R20911W	0.993	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				34	0	0	41	15	26.7857
ENSG00000270574	0	genome.wustl.edu	37	2	179444126	179444126	+	RNA	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	179444126	179444126	A	G	SNP	ENSG00000270574	ENST00000603521	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.108	-	-	-	no_errors	RP11-171I2.2	Clone_based_vega_gene	ENSG00000270574				19	0	0	16	9	36
TTN	0	genome.wustl.edu	37	2	179452031	179452031	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	179452031	179452031	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.56203	p.V18735M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				19	0	0	22	4	15.3846
TTN	0	genome.wustl.edu	37	2	179596108	179596108	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	179596108	179596108	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.13653	p.K4551N	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				302	0	0	267	18	6.31579
TTN	0	genome.wustl.edu	37	2	179598399	179598399	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	179598399	179598399	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.11985	p.T3995	0.191	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				81	0	0	61	19	23.75
TTN	0	genome.wustl.edu	37	2	179606044	179606044	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	179606044	179606044	G	A	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	silent	c.11403	p.F3801	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				122	0	0	136	15	9.93377
CCDC141	0	genome.wustl.edu	37	2	179732925	179732925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	179732925	179732925	C	T	SNP	CCDC141	ENST00000420890	human	ensembl	74_37	-1	known	missense	c.2402	p.R801H	0.000	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CCDC141	HGNC	ENSG00000163492				57	0	0	40	25	38.4615
CERKL	0	genome.wustl.edu	37	2	182423344	182423344	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	182423344	182423344	G	A	SNP	CERKL	ENST00000339098	human	ensembl	74_37	-1	known	nonsense	c.847	p.R283*	0.000	pfam_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom	-	no_errors	CERKL	HGNC	ENSG00000188452				75	0	0	75	4	5.06329
NEUROD1	0	genome.wustl.edu	37	2	182542664	182542664	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	182542664	182542664	C	T	SNP	NEUROD1	ENST00000295108	human	ensembl	74_37	-1	known	silent	c.924	p.L308	1.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD1	HGNC	ENSG00000162992				70	0	0	54	8	12.9032
NCKAP1	0	genome.wustl.edu	37	2	183902820	183902820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	183902820	183902820	C	T	SNP	NCKAP1	ENST00000360982	human	ensembl	74_37	-1	known	missense	c.8	p.R3H	1.000	NULL	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676				18	0	0	14	4	22.2222
FAM171B	0	genome.wustl.edu	37	2	187605049	187605049	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	187605049	187605049	G	A	SNP	FAM171B	ENST00000304698	human	ensembl	74_37	+1	known	silent	c.333	p.K111	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369				67	0	0	59	4	6.34921
FAM171B	0	genome.wustl.edu	37	2	187615864	187615864	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	187615864	187615864	T	C	SNP	FAM171B	ENST00000304698	human	ensembl	74_37	+1	known	missense	c.728	p.F243S	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369				106	0	0	97	9	8.49057
STAT4	0	genome.wustl.edu	37	2	191897688	191897688	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	191897688	191897688	G	A	SNP	STAT4	ENST00000358470	human	ensembl	74_37	-1	known	silent	c.2040	p.C680	0.367	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378				70	0	0	59	9	13.2353
SDPR	0	genome.wustl.edu	37	2	192701019	192701019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	192701019	192701019	C	T	SNP	SDPR	ENST00000304141	human	ensembl	74_37	-1	known	missense	c.908	p.R303Q	0.994	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497				104	0	0	74	34	31.4815
MOB4	0	genome.wustl.edu	37	2	198415089	198415089	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	198415089	198415089	G	A	SNP	MOB4	ENST00000323303	human	ensembl	74_37	+1	known	silent	c.525	p.R175	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB4	HGNC	ENSG00000115540				36	0	0	21	6	22.2222
CLK1	0	genome.wustl.edu	37	2	201718647	201718647	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	201718647	201718647	T	C	SNP	CLK1	ENST00000321356	human	ensembl	74_37	-1	known	silent	c.1290	p.S430	0.987	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK1	HGNC	ENSG00000013441				96	0	0	105	14	11.7647
CASP10	0	genome.wustl.edu	37	2	202074183	202074183	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	202074183	202074183	T	G	SNP	CASP10	ENST00000286186	human	ensembl	74_37	+1	known	missense	c.1313	p.L438R	1.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10	pfam_Pept_C14_caspase,pfam_DED,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,prints_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20	-	no_errors	CASP10	HGNC	ENSG00000003400				152	0	0	136	25	15.528
TMEM237	0	genome.wustl.edu	37	2	202496815	202496815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	202496815	202496815	C	T	SNP	TMEM237	ENST00000409883	human	ensembl	74_37	-1	known	missense	c.512	p.G171D	0.913	NULL	NULL	-	no_errors	TMEM237	HGNC	ENSG00000155755				112	0	0	75	43	36.4407
LAPTM4A	0	genome.wustl.edu	37	2	20251253	20251253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	20251253	20251253	C	T	SNP	LAPTM4A	ENST00000175091	human	ensembl	74_37	-1	known	missense	c.29	p.R10H	1.000	NULL	pfam_LAPTM4/5,tigrfam_LAPTM_4A/5	-	no_errors	LAPTM4A	HGNC	ENSG00000068697				25	0	0	7	6	46.1538
NBEAL1	0	genome.wustl.edu	37	2	204037566	204037566	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	204037566	204037566	A	G	SNP	NBEAL1	ENST00000449802	human	ensembl	74_37	+1	known	missense	c.6226	p.M2076V	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426				38	0	0	38	16	29.6296
PARD3B	0	genome.wustl.edu	37	2	205983664	205983664	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	205983664	205983664	C	T	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	nonsense	c.700	p.R234*	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				80	0	0	37	16	30.1887
NDUFS1	0	genome.wustl.edu	37	2	207006782	207006782	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	207006782	207006782	C	T	SNP	NDUFS1	ENST00000455934	human	ensembl	74_37	-1	known	missense	c.1187	p.R396H	1.000	pfam_Mopterin_OxRdtase,tigrfam_NADH_UbQ_OxRdtase_Gsu	pfam_Mopterin_OxRdtase,pfam_NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd,pfam_NuoG_C,pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,smart_NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd,pfscan_2Fe-2S_ferredoxin-type,tigrfam_NADH_UbQ_OxRdtase_Gsu	-	no_errors	NDUFS1	HGNC	ENSG00000023228				65	0	0	49	3	5.76923
GPR1	0	genome.wustl.edu	37	2	207041587	207041587	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	207041587	207041587	T	C	SNP	GPR1	ENST00000407325	human	ensembl	74_37	-1	known	missense	c.385	p.T129A	0.993	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR1_orph_rcpt,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt,prints_ATII_rcpt	-	no_errors	GPR1	HGNC	ENSG00000183671				111	0	0	96	6	5.88235
ZDBF2	0	genome.wustl.edu	37	2	207171520	207171520	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	207171520	207171520	G	A	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	silent	c.2268	p.P756	0.122	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				240	0	0	241	22	8.36502
GDF7	0	genome.wustl.edu	37	2	20871149	20871149	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	20871149	20871149	C	T	SNP	GDF7	ENST00000272224	human	ensembl	74_37	+1	known	silent	c.1317	p.Y439	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF7	HGNC	ENSG00000143869				29	0	0	32	8	20
CRYGC	0	genome.wustl.edu	37	2	208994365	208994365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	208994365	208994365	C	T	SNP	CRYGC	ENST00000282141	human	ensembl	74_37	-1	known	missense	c.52	p.E18K	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGC	HGNC	ENSG00000163254				207	0	0	145	59	28.9216
IDH1	0	genome.wustl.edu	37	2	209116255	209116255	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	209116255	209116255	G	A	SNP	IDH1	ENST00000345146	human	ensembl	74_37	-1	known	silent	c.21	p.G7	0.003	pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	-	no_errors	IDH1	HGNC	ENSG00000138413				57	0	0	55	3	5.17241
PIKFYVE	0	genome.wustl.edu	37	2	209138324	209138324	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	209138324	209138324	C	T	SNP	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	silent	c.189	p.G63	0.998	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020				37	0	0	64	7	9.85915
PIKFYVE	0	genome.wustl.edu	37	2	209209854	209209854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	209209854	209209854	G	A	SNP	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	missense	c.5047	p.A1683T	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020				46	0	0	50	5	9.09091
KANSL1L	0	genome.wustl.edu	37	2	210887888	210887888	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	210887888	210887888	G	A	SNP	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	nonsense	c.2749	p.R917*	1.000	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				36	0	0	25	10	28.5714
MYL1	0	genome.wustl.edu	37	2	211179636	211179636	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	211179636	211179636	T	G	SNP	MYL1	ENST00000352451	human	ensembl	74_37	-1	known	missense	c.131	p.K44T	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL1	HGNC	ENSG00000168530				178	0	0	153	26	14.5251
CPS1	0	genome.wustl.edu	37	2	211442163	211442163	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	211442163	211442163	C	T	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	silent	c.418	p.L140	1.000	pfam_CarbamoylP_synth_ssu_N,superfamily_CarbamoylP_synth_ssu_N,tigrfam_CarbamoylP_synth_ssu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				110	0	0	101	37	26.8116
APOB	0	genome.wustl.edu	37	2	21228086	21228086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	21228086	21228086	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.11654	p.A3885V	0.990	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				95	0	0	69	20	22.4719
APOB	0	genome.wustl.edu	37	2	21233839	21233839	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	21233839	21233839	T	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.5901	p.K1967N	0.928	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				55	0	0	65	13	16.6667
SMARCAL1	0	genome.wustl.edu	37	2	217285159	217285159	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	217285159	217285159	C	T	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	nonsense	c.1000	p.R334*	0.198	NULL	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375				63	0	0	54	9	14.2857
CXCR2	0	genome.wustl.edu	37	2	219000083	219000083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	219000083	219000083	G	A	SNP	CXCR2	ENST00000318507	human	ensembl	74_37	+1	known	missense	c.559	p.V187I	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR_1/2,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR2,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR2	HGNC	ENSG00000180871				80	0	0	77	10	11.4943
TTLL4	0	genome.wustl.edu	37	2	219614016	219614016	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	219614016	219614016	C	T	SNP	TTLL4	ENST00000258398	human	ensembl	74_37	+1	known	nonsense	c.2641	p.R881*	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL4	HGNC	ENSG00000135912				71	0	0	78	20	20.4082
TTLL4	0	genome.wustl.edu	37	2	219617636	219617636	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	219617636	219617636	C	T	SNP	TTLL4	ENST00000258398	human	ensembl	74_37	+1	known	nonsense	c.3127	p.R1043*	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL4	HGNC	ENSG00000135912				141	0	0	84	22	20.7547
CYP27A1	0	genome.wustl.edu	37	2	219679346	219679346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	219679346	219679346	C	T	SNP	CYP27A1	ENST00000258415	human	ensembl	74_37	+1	known	missense	c.1342	p.R448C	0.999	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP27A1	HGNC	ENSG00000135929				62	0	0	57	3	5
ABCB6	0	genome.wustl.edu	37	2	220080867	220080867	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	220080867	220080867	G	A	SNP	ABCB6	ENST00000265316	human	ensembl	74_37	-1	known	missense	c.1006	p.R336W	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB6	HGNC	ENSG00000115657				12	0	0	14	4	22.2222
SPEG	0	genome.wustl.edu	37	2	220347929	220347929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	220347929	220347929	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.5744	p.S1915N	0.968	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				18	0	0	15	3	16.6667
SPEG	0	genome.wustl.edu	37	2	220355154	220355154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	220355154	220355154	C	T	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.8945	p.A2982V	0.600	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				73	0	0	45	19	29.6875
GMPPA	0	genome.wustl.edu	37	2	220370455	220370455	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	220370455	220370455	C	T	SNP	GMPPA	ENST00000313597	human	ensembl	74_37	+1	known	missense	c.872	p.P291L	1.000	NULL	pfam_NTP_transferase	-	no_errors	GMPPA	HGNC	ENSG00000144591				68	0	0	45	16	26.2295
OBSL1	0	genome.wustl.edu	37	2	220432656	220432656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	220432656	220432656	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.1318	p.V440I	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				32	0	0	23	12	34.2857
KCNE4	0	genome.wustl.edu	37	2	223917920	223917920	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	223917920	223917920	C	T	SNP	KCNE4	ENST00000281830	human	ensembl	74_37	+1	known	silent	c.525	p.S175	1.000	NULL	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE	-	no_errors	KCNE4	HGNC	ENSG00000152049				46	0	0	47	8	14.5455
CUL3	0	genome.wustl.edu	37	2	225367719	225367719	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	225367719	225367719	G	A	SNP	CUL3	ENST00000264414	human	ensembl	74_37	-1	known	missense	c.1448	p.T483M	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257				289	0	0	224	87	27.9743
IRS1	0	genome.wustl.edu	37	2	227663053	227663053	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	227663053	227663053	G	A	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	silent	c.402	p.G134	1.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				65	0	0	45	5	10
SP110	0	genome.wustl.edu	37	2	231042313	231042313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	231042313	231042313	C	T	SNP	SP110	ENST00000258381	human	ensembl	74_37	-1	known	missense	c.1531	p.A511T	0.000	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899				279	0	0	215	99	31.5287
LOC101927958	0	genome.wustl.edu	37	2	239140958	239140958	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	239140958	239140958	C	T	SNP	LOC101927958	ENST00000456601	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC096574.4	Clone_based_vega_gene	ENSG00000225057				70	0	0	54	17	23.9437
ANKMY1	0	genome.wustl.edu	37	2	241463640	241463640	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	241463640	241463640	G	A	SNP	ANKMY1	ENST00000272972	human	ensembl	74_37	-1	known	silent	c.1227	p.H409	0.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504				66	0	0	38	17	30.9091
ANO7	0	genome.wustl.edu	37	2	242142788	242142788	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	242142788	242142788	G	A	SNP	ANO7	ENST00000274979	human	ensembl	74_37	+1	known	missense	c.926	p.R309H	0.010	NULL	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205				20	0	0	8	3	27.2727
MFSD2B	0	genome.wustl.edu	37	2	24244805	24244805	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	24244805	24244805	G	A	SNP	MFSD2B	ENST00000338315	human	ensembl	74_37	+1	known	missense	c.859	p.V287M	0.998	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD2B	HGNC	ENSG00000205639				158	0	0	142	13	8.3871
THAP4	0	genome.wustl.edu	37	2	242572343	242572343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	242572343	242572343	G	A	SNP	THAP4	ENST00000407315	human	ensembl	74_37	-1	known	missense	c.1229	p.S410L	0.995	NULL	pfam_DUF1794,pfam_Znf_C2CH,superfamily_Calycin-like,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP4	HGNC	ENSG00000176946				28	0	0	18	8	30.7692
HADHA	0	genome.wustl.edu	37	2	26414471	26414471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	26414471	26414471	C	T	SNP	HADHA	ENST00000380649	human	ensembl	74_37	-1	known	missense	c.2027	p.R676H	1.000	pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Fa_ox_alpha_mit	pfam_Crotonase_core_superfam,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Fa_ox_alpha_mit	-	no_errors	HADHA	HGNC	ENSG00000084754				60	0	0	52	9	14.7541
OTOF	0	genome.wustl.edu	37	2	26684998	26684998	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	26684998	26684998	G	A	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	silent	c.5244	p.D1748	0.996	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				377	0	0	232	82	26.1146
C2orf70	0	genome.wustl.edu	37	2	26802284	26802284	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	26802284	26802284	G	A	SNP	C2orf70	ENST00000329615	human	ensembl	74_37	+1	known	missense	c.584	p.C195Y	0.097	NULL	pfam_UPF0573/UPF0605	-	no_errors	C2orf70	HGNC	ENSG00000173557				84	0	0	62	28	31.1111
AGBL5	0	genome.wustl.edu	37	2	27276774	27276774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	27276774	27276774	C	T	SNP	AGBL5	ENST00000360131	human	ensembl	74_37	+1	known	missense	c.398	p.T133M	0.919	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693				89	0	0	76	6	7.31707
GTF3C2	0	genome.wustl.edu	37	2	27566379	27566379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	27566379	27566379	C	T	SNP	GTF3C2	ENST00000264720	human	ensembl	74_37	-1	known	missense	c.43	p.G15S	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GTF3C2	HGNC	ENSG00000115207				116	1	0.854701	106	10	8.62069
IFT172	0	genome.wustl.edu	37	2	27702965	27702965	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	27702965	27702965	C	T	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	silent	c.837	p.K279	0.990	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				62	0	0	50	3	5.66038
CCDC121	0	genome.wustl.edu	37	2	27850186	27850186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	27850186	27850186	C	T	SNP	CCDC121	ENST00000394775	human	ensembl	74_37	-1	known	missense	c.967	p.D323N	0.001	NULL	NULL	-	no_errors	CCDC121	HGNC	ENSG00000176714				49	0	0	56	6	9.67742
FOSL2	0	genome.wustl.edu	37	2	28627100	28627100	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	28627100	28627100	C	A	SNP	FOSL2	ENST00000264716	human	ensembl	74_37	+1	known	missense	c.229	p.P77T	0.998	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSL2	HGNC	ENSG00000075426				170	0	0	146	11	7.00637
C2orf71	0	genome.wustl.edu	37	2	29296745	29296745	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	29296745	29296745	T	C	SNP	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	missense	c.383	p.D128G	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270				111	0	0	115	11	8.73016
CRIM1	0	genome.wustl.edu	37	2	36771577	36771577	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	36771577	36771577	G	T	SNP	CRIM1	ENST00000280527	human	ensembl	74_37	+1	known	missense	c.2682	p.E894D	0.205	NULL	pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938				84	0	0	75	8	9.63855
FEZ2	0	genome.wustl.edu	37	2	36818143	36818143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	36818143	36818143	G	A	SNP	FEZ2	ENST00000405912	human	ensembl	74_37	-1	known	missense	c.278	p.A93V	1.000	pfam_FEZ	pfam_FEZ	-	no_errors	FEZ2	HGNC	ENSG00000171055				26	0	0	18	7	28
PRKD3	0	genome.wustl.edu	37	2	37483955	37483955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	37483955	37483955	G	A	SNP	PRKD3	ENST00000234179	human	ensembl	74_37	-1	known	missense	c.2263	p.R755C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825				128	1	0.775194	97	41	29.7101
DHX57	0	genome.wustl.edu	37	2	39070156	39070156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	39070156	39070156	G	A	SNP	DHX57	ENST00000295373	human	ensembl	74_37	-1	known	missense	c.2416	p.R806C	1.000	superfamily_P-loop_NTPase	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_P-loop_NTPase,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214				64	0	0	35	12	25.5319
DHX57	0	genome.wustl.edu	37	2	39095428	39095428	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	39095428	39095428	G	A	SNP	DHX57	ENST00000295373	human	ensembl	74_37	-1	known	silent	c.120	p.G40	0.920	NULL	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_P-loop_NTPase,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214				97	0	0	74	15	16.8539
PPM1B	0	genome.wustl.edu	37	2	44428909	44428909	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	44428909	44428909	C	T	SNP	PPM1B	ENST00000282412	human	ensembl	74_37	+1	known	missense	c.571	p.R191C	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1B	HGNC	ENSG00000138032				111	0	0	72	24	25
PPM1B	0	genome.wustl.edu	37	2	44445156	44445156	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	44445156	44445156	A	G	SNP	PPM1B	ENST00000282412	human	ensembl	74_37	+1	known	missense	c.1015	p.M339V	1.000	pfam_PP2C_C,superfamily_PP2C_C	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1B	HGNC	ENSG00000138032				127	0	0	115	7	5.7377
SLC3A1	0	genome.wustl.edu	37	2	44528255	44528255	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	44528255	44528255	C	T	SNP	SLC3A1	ENST00000260649	human	ensembl	74_37	+1	known	silent	c.1125	p.P375	0.973	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A1	HGNC	ENSG00000138079				53	0	0	38	13	25.4902
PPP1R21	0	genome.wustl.edu	37	2	48692092	48692092	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	48692092	48692092	C	T	SNP	PPP1R21	ENST00000294952	human	ensembl	74_37	+1	known	silent	c.711	p.N237	0.897	NULL	pfam_KLRAQ/TTKRSYEDQ_C,pfam_Unchr_KLRAQ/TTKRSYEDQ_N,superfamily_Ferritin-like_SF	-	no_errors	PPP1R21	HGNC	ENSG00000162869				56	0	0	52	6	10.3448
NRXN1	0	genome.wustl.edu	37	2	50464107	50464107	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	50464107	50464107	A	G	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.3342	p.P1114	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				68	0	0	56	16	22.2222
BCL11A	0	genome.wustl.edu	37	2	60688092	60688092	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	60688092	60688092	G	A	SNP	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	missense	c.1955	p.T652M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				68	0	0	52	17	24.6377
TMEM18	0	genome.wustl.edu	37	2	675583	675583	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	675583	675583	G	A	SNP	TMEM18	ENST00000281017	human	ensembl	74_37	-1	known	silent	c.105	p.H35	0.079	NULL	NULL	-	no_errors	TMEM18	HGNC	ENSG00000151353				67	0	0	47	23	32.8571
GKN2	0	genome.wustl.edu	37	2	69174390	69174390	+	Splice_Site	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	69174390	69174390	C	T	SNP	GKN2	ENST00000328895	human	ensembl	74_37	-1	known	splice_site	c.205-1	e4-1	1.000	-	-	-	no_errors	GKN2	HGNC	ENSG00000183607				88	0	0	47	21	30.8824
ATP6V1B1	0	genome.wustl.edu	37	2	71163176	71163176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	71163176	71163176	G	A	SNP	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	missense	c.92	p.R31Q	0.997	NULL	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				119	0	0	71	31	30.3922
ATP6V1B1	0	genome.wustl.edu	37	2	71190412	71190412	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	71190412	71190412	C	T	SNP	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	nonsense	c.1030	p.Q344*	1.000	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				100	0	0	69	5	6.75676
ZNF638	0	genome.wustl.edu	37	2	71577059	71577059	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	71577059	71577059	A	T	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	missense	c.975	p.Q325H	0.994	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				175	0	0	155	18	10.4046
RNF144A	0	genome.wustl.edu	37	2	7164594	7164594	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	7164594	7164594	A	G	SNP	RNF144A	ENST00000320892	human	ensembl	74_37	+1	known	missense	c.604	p.M202V	1.000	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_Znf_C6HC,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF144A	HGNC	ENSG00000151692				78	0	0	52	26	33.3333
DYSF	0	genome.wustl.edu	37	2	71762412	71762412	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	71762412	71762412	C	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	silent	c.1461	p.C487	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				116	0	0	85	32	27.3504
SFXN5	0	genome.wustl.edu	37	2	73198729	73198729	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	73198729	73198729	G	A	SNP	SFXN5	ENST00000272433	human	ensembl	74_37	-1	known	silent	c.711	p.L237	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN5	HGNC	ENSG00000144040				48	0	0	40	17	29.8246
ALMS1	0	genome.wustl.edu	37	2	73747133	73747133	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	73747133	73747133	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	silent	c.9768	p.R3256	0.002	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				187	0	0	166	15	8.28729
TPRKB	0	genome.wustl.edu	37	2	73957738	73957738	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	73957738	73957738	C	A	SNP	TPRKB	ENST00000272424	human	ensembl	74_37	-1	known	missense	c.390	p.Q130H	0.997	pfam_CGI121/TPRKB	pfam_CGI121/TPRKB	-	no_errors	TPRKB	HGNC	ENSG00000144034				46	0	0	50	4	7.40741
STAMBP	0	genome.wustl.edu	37	2	74089388	74089388	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	74089388	74089388	C	T	SNP	STAMBP	ENST00000486458	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.732	-	-	-	no_errors	STAMBP	HGNC	ENSG00000124356				61	0	0	37	15	28.8462
TET3	0	genome.wustl.edu	37	2	74317124	74317124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	74317124	74317124	C	T	SNP	TET3	ENST00000409262	human	ensembl	74_37	+1	known	missense	c.2584	p.R862W	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605				149	0	0	130	15	10.3448
LOXL3	0	genome.wustl.edu	37	2	74763923	74763923	+	Silent	SNP	G	G	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	74763923	74763923	G	C	SNP	LOXL3	ENST00000264094	human	ensembl	74_37	-1	known	silent	c.825	p.G275	0.118	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL3	HGNC	ENSG00000115318				115	0	0	85	5	5.55556
SEMA4F	0	genome.wustl.edu	37	2	74906809	74906809	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	74906809	74906809	T	C	SNP	SEMA4F	ENST00000357877	human	ensembl	74_37	+1	known	missense	c.1786	p.C596R	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4F	HGNC	ENSG00000135622				129	0	0	97	54	35.7616
LRRTM4	0	genome.wustl.edu	37	2	77746704	77746704	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	77746704	77746704	A	G	SNP	LRRTM4	ENST00000409911	human	ensembl	74_37	-1	known	silent	c.294	p.I98	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204				59	0	0	58	9	13.4328
TCF7L1	0	genome.wustl.edu	37	2	85532493	85532493	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	85532493	85532493	C	T	SNP	TCF7L1	ENST00000282111	human	ensembl	74_37	+1	known	missense	c.956	p.P319L	0.996	NULL	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L1	HGNC	ENSG00000152284				53	0	0	50	5	9.09091
RNF103	0	genome.wustl.edu	37	2	86831536	86831536	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	86831536	86831536	A	G	SNP	RNF103	ENST00000237455	human	ensembl	74_37	-1	known	silent	c.1488	p.P496	0.948	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305				69	0	0	77	9	10.4651
CD8A	0	genome.wustl.edu	37	2	87017603	87017603	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	87017603	87017603	A	G	SNP	CD8A	ENST00000538832	human	ensembl	74_37	-1	known	missense	c.374	p.L125P	0.021	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD8A	HGNC	ENSG00000153563				128	0	0	101	11	9.82143
RPIA	0	genome.wustl.edu	37	2	89034099	89034099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	89034099	89034099	G	A	SNP	RPIA	ENST00000283646	human	ensembl	74_37	+1	known	missense	c.493	p.V165I	1.000	pfam_Ribose5P_isomerase_typA,tigrfam_Ribose5P_isomerase_typA	pfam_Ribose5P_isomerase_typA,tigrfam_Ribose5P_isomerase_typA	-	no_errors	RPIA	HGNC	ENSG00000153574				110	0	0	84	9	9.67742
KIDINS220	0	genome.wustl.edu	37	2	8957838	8957838	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	8957838	8957838	C	T	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	nonsense	c.216	p.W72*	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				116	0	0	120	8	6.25
ANKRD20A8P	0	genome.wustl.edu	37	2	95522779	95522779	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	95522779	95522779	C	T	SNP	ANKRD20A8P	ENST00000432432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKRD20A8P	HGNC	ENSG00000229089				45	0	0	26	13	33.3333
ZNF2	0	genome.wustl.edu	37	2	95847304	95847304	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	95847304	95847304	C	A	SNP	ZNF2	ENST00000340539	human	ensembl	74_37	+1	known	missense	c.731	p.S244Y	0.096	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF2	HGNC	ENSG00000163067				140	0	0	137	11	7.43243
INPP4A	0	genome.wustl.edu	37	2	99172076	99172076	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	99172076	99172076	C	T	SNP	INPP4A	ENST00000074304	human	ensembl	74_37	+1	known	silent	c.1642	p.L548	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4A	HGNC	ENSG00000040933				57	0	0	38	15	28.3019
INPP4A	0	genome.wustl.edu	37	2	99204042	99204042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	99204042	99204042	G	A	SNP	INPP4A	ENST00000074304	human	ensembl	74_37	+1	known	missense	c.2905	p.E969K	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4A	HGNC	ENSG00000040933				78	0	0	61	28	31.4607
JAG1	0	genome.wustl.edu	37	20	10632334	10632334	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	10632334	10632334	C	T	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	missense	c.1015	p.A339T	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384				35	0	0	27	8	22.8571
KIF16B	0	genome.wustl.edu	37	20	16360726	16360726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	16360726	16360726	G	A	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	missense	c.1921	p.R641C	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				76	0	0	68	31	31.3131
ZNF133	0	genome.wustl.edu	37	20	18295989	18295989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	18295989	18295989	C	T	SNP	ZNF133	ENST00000396026	human	ensembl	74_37	+1	known	missense	c.503	p.A168V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF133	HGNC	ENSG00000125846				113	0	0	121	11	8.33333
SLC24A3	0	genome.wustl.edu	37	20	19496186	19496186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	19496186	19496186	C	T	SNP	SLC24A3	ENST00000328041	human	ensembl	74_37	+1	known	missense	c.326	p.A109V	0.569	NULL	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A3	HGNC	ENSG00000185052				156	1	0.636943	144	9	5.88235
TGM3	0	genome.wustl.edu	37	20	2321186	2321186	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	2321186	2321186	C	A	SNP	TGM3	ENST00000381458	human	ensembl	74_37	+1	known	missense	c.2041	p.P681T	0.993	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM3	HGNC	ENSG00000125780				87	0	0	89	5	5.31915
TGM6	0	genome.wustl.edu	37	20	2378638	2378638	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	2378638	2378638	C	T	SNP	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	silent	c.618	p.T206	0.030	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				77	0	0	73	16	17.9775
GNRH2	0	genome.wustl.edu	37	20	3025167	3025167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	3025167	3025167	G	A	SNP	GNRH2	ENST00000245983	human	ensembl	74_37	+1	known	missense	c.107	p.R36Q	0.232	NULL	pfam_GnRH	-	no_errors	GNRH2	HGNC	ENSG00000125787				48	0	0	26	4	13.3333
FASTKD5	0	genome.wustl.edu	37	20	3128087	3128087	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	3128087	3128087	A	G	SNP	FASTKD5	ENST00000380266	human	ensembl	74_37	-1	known	silent	c.1630	p.L544	0.998	pfam_FAST_2	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD5	HGNC	ENSG00000215251				55	0	0	46	3	6.12245
DNMT3B	0	genome.wustl.edu	37	20	31387092	31387092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	31387092	31387092	C	T	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	missense	c.1717	p.R573W	1.000	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				42	0	0	31	8	20.5128
ZNF341	0	genome.wustl.edu	37	20	32341075	32341075	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	32341075	32341075	C	A	SNP	ZNF341	ENST00000375200	human	ensembl	74_37	+1	known	missense	c.587	p.P196H	0.979	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF341	HGNC	ENSG00000131061				16	0	0	13	5	27.7778
CEP250	0	genome.wustl.edu	37	20	34055233	34055233	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	34055233	34055233	C	A	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.704	p.S235Y	0.987	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				139	0	0	127	15	10.5634
RBM39	0	genome.wustl.edu	37	20	34312604	34312604	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	34312604	34312604	C	A	SNP	RBM39	ENST00000253363	human	ensembl	74_37	-1	known	missense	c.575	p.R192L	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM39	HGNC	ENSG00000131051				108	0	0	101	6	5.60748
MROH8	0	genome.wustl.edu	37	20	35749348	35749348	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	35749348	35749348	G	T	SNP	MROH8	ENST00000400441	human	ensembl	74_37	-1	known	missense	c.2068	p.L690M	0.997	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH8	HGNC	ENSG00000101353				51	0	0	42	6	12.5
ADAM33	0	genome.wustl.edu	37	20	3653476	3653476	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	3653476	3653476	G	A	SNP	ADAM33	ENST00000356518	human	ensembl	74_37	-1	known	silent	c.1203	p.G401	0.846	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451				16	0	0	10	9	47.3684
SIGLEC1	0	genome.wustl.edu	37	20	3669223	3669223	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	3669223	3669223	G	A	SNP	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	missense	c.5114	p.A1705V	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				11	0	0	13	3	18.75
HSPA12B	0	genome.wustl.edu	37	20	3729009	3729009	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	3729009	3729009	G	A	SNP	HSPA12B	ENST00000254963	human	ensembl	74_37	+1	known	missense	c.821	p.R274H	1.000	NULL	NULL	-	no_errors	HSPA12B	HGNC	ENSG00000132622				13	0	0	13	5	27.7778
CDC25B	0	genome.wustl.edu	37	20	3782662	3782662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	3782662	3782662	G	A	SNP	CDC25B	ENST00000245960	human	ensembl	74_37	+1	known	missense	c.1013	p.R338Q	1.000	pfam_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25B	HGNC	ENSG00000101224				16	0	0	5	3	37.5
PLCG1	0	genome.wustl.edu	37	20	39791298	39791298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	39791298	39791298	G	A	SNP	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	missense	c.614	p.S205N	0.994	pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_dom,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181				71	0	0	51	4	7.27273
CHD6	0	genome.wustl.edu	37	20	40081533	40081533	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	40081533	40081533	T	C	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.3170	p.Y1057C	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				36	0	0	54	4	6.89655
TTPAL	0	genome.wustl.edu	37	20	43115284	43115284	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	43115284	43115284	C	T	SNP	TTPAL	ENST00000262605	human	ensembl	74_37	+1	known	nonsense	c.688	p.R230*	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPAL	HGNC	ENSG00000124120				65	0	0	75	4	5.06329
SERINC3	0	genome.wustl.edu	37	20	43141456	43141456	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	43141456	43141456	C	T	SNP	SERINC3	ENST00000255175	human	ensembl	74_37	-1	known	silent	c.381	p.A127	0.998	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC3	HGNC	ENSG00000132824				47	0	0	34	7	17.0732
PKIG	0	genome.wustl.edu	37	20	43243338	43243338	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	43243338	43243338	C	T	SNP	PKIG	ENST00000349959	human	ensembl	74_37	+1	known	silent	c.141	p.L47	0.138	pfam_cAMP_dep_PKI	pfam_cAMP_dep_PKI	-	no_errors	PKIG	HGNC	ENSG00000168734				56	0	0	32	15	31.9149
ADA	0	genome.wustl.edu	37	20	43249692	43249692	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	43249692	43249692	G	A	SNP	ADA	ENST00000372874	human	ensembl	74_37	-1	known	silent	c.942	p.D314	0.885	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	-	no_errors	ADA	HGNC	ENSG00000196839				140	0	0	108	10	8.47458
WISP2	0	genome.wustl.edu	37	20	43353454	43353454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	43353454	43353454	G	A	SNP	WISP2	ENST00000190983	human	ensembl	74_37	+1	known	missense	c.353	p.S118N	0.959	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP2	HGNC	ENSG00000064205				26	0	0	24	3	11.1111
MATN4	0	genome.wustl.edu	37	20	43926908	43926908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	43926908	43926908	C	T	SNP	MATN4	ENST00000372754	human	ensembl	74_37	-1	known	missense	c.1451	p.R484Q	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN4	HGNC	ENSG00000124159				86	0	0	71	6	7.79221
SLC9A8	0	genome.wustl.edu	37	20	48431697	48431697	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	48431697	48431697	T	C	SNP	SLC9A8	ENST00000417961	human	ensembl	74_37	+1	known	missense	c.179	p.M60T	1.000	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818				149	0	0	109	12	9.91736
TMEM230	0	genome.wustl.edu	37	20	5090082	5090082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	5090082	5090082	G	A	SNP	TMEM230	ENST00000342308	human	ensembl	74_37	-1	known	missense	c.184	p.R62C	0.010	NULL	pfam_DUF872_TM	-	no_errors	TMEM230	HGNC	ENSG00000089063				30	0	0	34	4	10.5263
CYP24A1	0	genome.wustl.edu	37	20	52789528	52789528	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	52789528	52789528	G	A	SNP	CYP24A1	ENST00000216862	human	ensembl	74_37	-1	known	silent	c.369	p.S123	0.993	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186				94	0	0	86	9	9.47368
ZBP1	0	genome.wustl.edu	37	20	56191408	56191408	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	56191408	56191408	G	A	SNP	ZBP1	ENST00000343535	human	ensembl	74_37	-1	known	nonsense	c.151	p.R51*	0.726	pfam_dsRNA_A_deaminase,smart_dsRNA_A_deaminase	pfam_dsRNA_A_deaminase,smart_dsRNA_A_deaminase	-	no_errors	ZBP1	HGNC	ENSG00000124256				156	0	0	108	10	8.47458
RAB22A	0	genome.wustl.edu	37	20	56918855	56918855	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	56918855	56918855	A	G	SNP	RAB22A	ENST00000244040	human	ensembl	74_37	+1	known	silent	c.198	p.R66	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB22A	HGNC	ENSG00000124209				26	0	0	19	4	17.3913
LAMA5	0	genome.wustl.edu	37	20	60902996	60902996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	60902996	60902996	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.4723	p.R1575C	0.985	smart_EG-like_dom,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				94	0	0	58	20	25.641
MIR124-3	0	genome.wustl.edu	37	20	61809912	61809912	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	61809912	61809912	G	A	SNP	MIR124-3	ENST00000384866	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR124-3	HGNC	ENSG00000207598				46	0	0	46	6	11.5385
ARFGAP1	0	genome.wustl.edu	37	20	61908657	61908657	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	61908657	61908657	G	A	SNP	ARFGAP1	ENST00000353546	human	ensembl	74_37	+1	known	missense	c.443	p.R148Q	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP1	HGNC	ENSG00000101199				26	0	0	15	8	34.7826
COL20A1	0	genome.wustl.edu	37	20	61938964	61938964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	61938964	61938964	G	A	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	missense	c.619	p.A207T	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				76	0	0	56	4	6.66667
COL20A1	0	genome.wustl.edu	37	20	61944569	61944569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	61944569	61944569	G	A	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	missense	c.2177	p.R726H	0.853	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				64	0	0	37	10	21.2766
KCNQ2	0	genome.wustl.edu	37	20	62046276	62046276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	62046276	62046276	G	A	SNP	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	missense	c.1421	p.A474V	0.562	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043				156	0	0	83	40	32.5203
HELZ2	0	genome.wustl.edu	37	20	62198376	62198376	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	62198376	62198376	G	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.2335	p.P779T	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				106	0	0	73	31	29.8077
ZBTB46	0	genome.wustl.edu	37	20	62421541	62421541	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	62421541	62421541	G	A	SNP	ZBTB46	ENST00000245663	human	ensembl	74_37	-1	known	silent	c.570	p.H190	0.283	NULL	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584				17	0	0	17	13	43.3333
NPBWR2	0	genome.wustl.edu	37	20	62737451	62737451	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	62737451	62737451	C	T	SNP	NPBWR2	ENST00000369768	human	ensembl	74_37	-1	known	missense	c.734	p.R245H	0.813	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	-	no_errors	NPBWR2	HGNC	ENSG00000125522				19	0	0	9	4	30.7692
BMP2	0	genome.wustl.edu	37	20	6759451	6759451	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	6759451	6759451	C	T	SNP	BMP2	ENST00000378827	human	ensembl	74_37	+1	known	silent	c.906	p.Y302	0.956	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP2	HGNC	ENSG00000125845				80	0	0	47	30	38.961
HAO1	0	genome.wustl.edu	37	20	7886818	7886818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	7886818	7886818	G	A	SNP	HAO1	ENST00000378789	human	ensembl	74_37	-1	known	missense	c.704	p.A235V	1.000	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO1	HGNC	ENSG00000101323				169	0	0	117	48	29.0909
ANKRD30BP2	0	genome.wustl.edu	37	21	14418577	14418577	+	RNA	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	14418577	14418577	T	G	SNP	ANKRD30BP2	ENST00000507941	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.057	-	-	-	no_errors	ANKRD30BP2	HGNC	ENSG00000224309				78	0	0	85	9	9.57447
TMPRSS15	0	genome.wustl.edu	37	21	19653413	19653413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	19653413	19653413	C	T	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	missense	c.2612	p.R871Q	0.679	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				172	0	0	167	17	9.23913
ADAMTS1	0	genome.wustl.edu	37	21	28210023	28210023	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	28210023	28210023	C	T	SNP	ADAMTS1	ENST00000284984	human	ensembl	74_37	-1	known	missense	c.2779	p.G927S	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Pept_M12B_ADAM-TS1	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734				78	0	0	92	6	6.12245
LTN1	0	genome.wustl.edu	37	21	30359239	30359239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	30359239	30359239	C	T	SNP	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	missense	c.197	p.R66Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				45	0	0	36	14	28
KRTAP24-1	0	genome.wustl.edu	37	21	31654858	31654858	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	31654858	31654858	G	A	SNP	KRTAP24-1	ENST00000340345	human	ensembl	74_37	-1	known	silent	c.393	p.C131	0.060	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP24-1	HGNC	ENSG00000188694				123	0	0	83	7	7.77778
TIAM1	0	genome.wustl.edu	37	21	32639198	32639198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	32639198	32639198	G	A	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.91	p.R31C	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				36	0	0	32	4	11.1111
PSMG1	0	genome.wustl.edu	37	21	40550511	40550511	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	40550511	40550511	G	A	SNP	PSMG1	ENST00000331573	human	ensembl	74_37	-1	known	silent	c.519	p.T173	0.469	pirsf_Proteasome_assmbl_chp_1	pirsf_Proteasome_assmbl_chp_1	-	no_errors	PSMG1	HGNC	ENSG00000183527				62	0	0	84	7	7.69231
DSCAM	0	genome.wustl.edu	37	21	41414322	41414322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	41414322	41414322	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.5662	p.A1888T	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				95	0	0	51	12	19.0476
DSCAM	0	genome.wustl.edu	37	21	41496241	41496241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	41496241	41496241	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.3577	p.A1193T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				89	0	0	55	13	19.1176
PRDM15	0	genome.wustl.edu	37	21	43256665	43256665	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	43256665	43256665	G	A	SNP	PRDM15	ENST00000269844	human	ensembl	74_37	-1	known	silent	c.2193	p.L731	0.766	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956				144	1	0.689655	119	12	9.16031
C2CD2	0	genome.wustl.edu	37	21	43327823	43327823	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	43327823	43327823	C	T	SNP	C2CD2	ENST00000380486	human	ensembl	74_37	-1	known	silent	c.1089	p.T363	0.000	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom	-	no_errors	C2CD2	HGNC	ENSG00000157617				20	0	0	16	7	30.4348
TRAPPC10	0	genome.wustl.edu	37	21	45478985	45478985	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	45478985	45478985	A	G	SNP	TRAPPC10	ENST00000291574	human	ensembl	74_37	+1	known	missense	c.680	p.E227G	1.000	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218				64	0	0	53	8	13.1148
ICOSLG	0	genome.wustl.edu	37	21	45655435	45655435	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	45655435	45655435	G	A	SNP	ICOSLG	ENST00000344330	human	ensembl	74_37	-1	known	silent	c.417	p.S139	1.000	NULL	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	ICOSLG	HGNC	ENSG00000160223				134	0	0	83	34	29.0598
DNMT3L	0	genome.wustl.edu	37	21	45679416	45679416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	45679416	45679416	G	A	SNP	DNMT3L	ENST00000270172	human	ensembl	74_37	-1	known	missense	c.248	p.A83V	0.006	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	DNMT3L	HGNC	ENSG00000142182				91	0	0	84	8	8.69565
TSPEAR	0	genome.wustl.edu	37	21	45947381	45947381	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	45947381	45947381	C	T	SNP	TSPEAR	ENST00000323084	human	ensembl	74_37	-1	known	missense	c.943	p.V315M	1.000	pfscan_EAR	pfam_EPTP,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_EAR	-	no_errors	TSPEAR	HGNC	ENSG00000175894				87	0	0	60	20	25
COL18A1	0	genome.wustl.edu	37	21	46895395	46895395	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	46895395	46895395	C	T	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	silent	c.1989	p.S663	0.109	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				13	0	0	9	3	25
PCNT	0	genome.wustl.edu	37	21	47786513	47786513	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	47786513	47786513	G	A	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.2624	p.R875H	0.816	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				54	0	0	43	18	29.5082
PCNT	0	genome.wustl.edu	37	21	47801609	47801609	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	47801609	47801609	G	T	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.3166	p.G1056C	0.259	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				100	0	0	92	29	23.9669
CECR2	0	genome.wustl.edu	37	22	18021966	18021966	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	18021966	18021966	G	T	SNP	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	missense	c.2068	p.G690W	0.791	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954				18	0	0	6	7	53.8462
DGCR2	0	genome.wustl.edu	37	22	19055688	19055688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	19055688	19055688	G	A	SNP	DGCR2	ENST00000263196	human	ensembl	74_37	-1	known	missense	c.253	p.R85W	0.331	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,smart_VWF_C,pfscan_LDrepeatLR_classA_rpt,pfscan_C-type_lectin	-	no_errors	DGCR2	HGNC	ENSG00000070413				35	0	0	20	10	33.3333
TBX1	0	genome.wustl.edu	37	22	19766891	19766891	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	19766891	19766891	C	T	SNP	TBX1	ENST00000329705	human	ensembl	74_37	+1	known	silent	c.1158	p.G386	0.001	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX1	HGNC	ENSG00000184058				57	0	0	57	7	10.9375
DGCR8	0	genome.wustl.edu	37	22	20094192	20094192	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	20094192	20094192	C	A	SNP	DGCR8	ENST00000351989	human	ensembl	74_37	+1	known	missense	c.1967	p.A656E	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom	pfam_dsRNA-bd_dom,superfamily_WW_dom,smart_WW_dom,smart_dsRNA-bd_dom,pfscan_WW_dom,pfscan_dsRNA-bd_dom	-	no_errors	DGCR8	HGNC	ENSG00000128191				85	0	0	55	7	11.2903
LZTR1	0	genome.wustl.edu	37	22	21348040	21348040	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	21348040	21348040	T	C	SNP	LZTR1	ENST00000215739	human	ensembl	74_37	+1	known	silent	c.1350	p.G450	0.404	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949				16	0	0	21	6	22.2222
SLC7A4	0	genome.wustl.edu	37	22	21385717	21385717	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	21385717	21385717	C	T	SNP	SLC7A4	ENST00000382932	human	ensembl	74_37	-1	known	missense	c.385	p.G129S	0.998	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A4	HGNC	ENSG00000099960				41	0	0	45	4	8.16327
ZDHHC8P1	0	genome.wustl.edu	37	22	23741995	23741995	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	23741995	23741995	G	A	SNP	ZDHHC8P1	ENST00000255890	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.900	-	-	-	no_errors	ZDHHC8P1	HGNC	ENSG00000133519				11	0	0	6	4	40
CRYBB3	0	genome.wustl.edu	37	22	25597378	25597378	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	25597378	25597378	C	T	SNP	CRYBB3	ENST00000215855	human	ensembl	74_37	+1	known	silent	c.15	p.H5	0.233	NULL	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB3	HGNC	ENSG00000100053				151	0	0	129	7	5.14706
ADRBK2	0	genome.wustl.edu	37	22	26118325	26118325	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	26118325	26118325	C	T	SNP	ADRBK2	ENST00000324198	human	ensembl	74_37	+1	known	missense	c.1975	p.R659C	0.994	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK2	HGNC	ENSG00000100077				111	0	0	106	8	7.01754
OSM	0	genome.wustl.edu	37	22	30660414	30660414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	30660414	30660414	G	A	SNP	OSM	ENST00000215781	human	ensembl	74_37	-1	known	missense	c.217	p.H73Y	0.000	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin	-	no_errors	OSM	HGNC	ENSG00000099985				36	0	0	28	6	17.6471
OSBP2	0	genome.wustl.edu	37	22	31302243	31302243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	31302243	31302243	G	A	SNP	OSBP2	ENST00000332585	human	ensembl	74_37	+1	known	missense	c.2668	p.G890R	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,superfamily_DNA-bd_dom_put,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP2	HGNC	ENSG00000184792				117	0	0	116	7	5.69106
PLA2G3	0	genome.wustl.edu	37	22	31533732	31533732	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	31533732	31533732	C	A	SNP	PLA2G3	ENST00000215885	human	ensembl	74_37	-1	known	missense	c.1030	p.G344C	0.026	superfamily_PLipase_A2_dom	pfam_PLipase_A2,superfamily_PLipase_A2_dom	-	no_errors	PLA2G3	HGNC	ENSG00000100078				136	0	0	104	45	30.2013
PISD	0	genome.wustl.edu	37	22	32017778	32017778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	32017778	32017778	C	T	SNP	PISD	ENST00000439502	human	ensembl	74_37	-1	known	missense	c.415	p.V139I	0.968	NULL	pfam_PS_Dcarbxylase,tigrfam_PS_decarb	-	no_errors	PISD	HGNC	ENSG00000241878				83	0	0	67	5	6.94444
TOM1	0	genome.wustl.edu	37	22	35719087	35719087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	35719087	35719087	G	A	SNP	TOM1	ENST00000411850	human	ensembl	74_37	+1	known	missense	c.283	p.V95M	0.995	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_VHS	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1	HGNC	ENSG00000100284				68	0	0	52	8	13.3333
MYH9	0	genome.wustl.edu	37	22	36680552	36680552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	36680552	36680552	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.5489	p.R1830H	1.000	pfam_Myosin_tail,superfamily_Regulat_G_prot_signal_superfam	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				43	0	0	56	6	9.67742
MYH9	0	genome.wustl.edu	37	22	36684927	36684927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	36684927	36684927	G	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.4616	p.T1539M	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				98	0	0	88	6	6.38298
MYH9	0	genome.wustl.edu	37	22	36689446	36689446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	36689446	36689446	G	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.4024	p.R1342W	0.467	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				117	0	0	69	30	30.303
CSF2RB	0	genome.wustl.edu	37	22	37330015	37330015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	37330015	37330015	C	T	SNP	CSF2RB	ENST00000262825	human	ensembl	74_37	+1	known	missense	c.1312	p.R438C	0.000	pirsf_IL3_rcpt_beta,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368				41	0	0	35	13	27.0833
SH3BP1	0	genome.wustl.edu	37	22	38040646	38040646	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	38040646	38040646	C	T	SNP	SH3BP1	ENST00000357436	human	ensembl	74_37	+1	known	silent	c.621	p.D207	0.968	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092				377	1	0.26455	285	25	8.06452
KCNJ4	0	genome.wustl.edu	37	22	38824122	38824122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	38824122	38824122	G	A	SNP	KCNJ4	ENST00000303592	human	ensembl	74_37	-1	known	missense	c.16	p.R6C	1.000	pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.3	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.3	-	no_errors	KCNJ4	HGNC	ENSG00000168135				241	0	0	186	79	29.8113
GTPBP1	0	genome.wustl.edu	37	22	39112791	39112791	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	39112791	39112791	G	A	SNP	GTPBP1	ENST00000216044	human	ensembl	74_37	+1	known	missense	c.620	p.R207H	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel	-	no_errors	GTPBP1	HGNC	ENSG00000100226				114	0	0	97	10	9.34579
MIEF1	0	genome.wustl.edu	37	22	39907381	39907381	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	39907381	39907381	C	A	SNP	MIEF1	ENST00000325301	human	ensembl	74_37	+1	known	silent	c.82	p.R28	1.000	NULL	NULL	-	no_errors	MIEF1	HGNC	ENSG00000100335				21	0	0	22	2	8.33333
MCHR1	0	genome.wustl.edu	37	22	41077107	41077107	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	41077107	41077107	C	T	SNP	MCHR1	ENST00000249016	human	ensembl	74_37	+1	known	silent	c.444	p.D148	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH1_rcpt,prints_MCH_rcpt,prints_GPCR_Rhodpsn	-	no_errors	MCHR1	HGNC	ENSG00000128285				99	0	0	66	12	15.3846
RANGAP1	0	genome.wustl.edu	37	22	41660826	41660826	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	41660826	41660826	T	C	SNP	RANGAP1	ENST00000356244	human	ensembl	74_37	-1	known	missense	c.322	p.I108V	1.000	NULL	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401				112	0	0	97	13	11.8182
MEI1	0	genome.wustl.edu	37	22	42190432	42190432	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	42190432	42190432	C	A	SNP	MEI1	ENST00000401548	human	ensembl	74_37	+1	known	missense	c.3485	p.A1162D	0.990	NULL	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077				201	0	0	177	17	8.76289
NAGA	0	genome.wustl.edu	37	22	42463259	42463259	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	42463259	42463259	C	T	SNP	NAGA	ENST00000396398	human	ensembl	74_37	-1	known	silent	c.360	p.A120	0.030	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	NAGA	HGNC	ENSG00000198951				174	0	0	144	12	7.69231
SERHL	0	genome.wustl.edu	37	22	42908278	42908278	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	42908278	42908278	C	T	SNP	SERHL	ENST00000359906	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SERHL	HGNC	ENSG00000172250				71	0	0	49	9	15.5172
SULT4A1	0	genome.wustl.edu	37	22	44223513	44223513	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	44223513	44223513	G	A	SNP	SULT4A1	ENST00000249130	human	ensembl	74_37	-1	known	silent	c.750	p.C250	1.000	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT4A1	HGNC	ENSG00000130540				42	0	0	27	4	12.9032
PARVB	0	genome.wustl.edu	37	22	44495947	44495947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	44495947	44495947	C	T	SNP	PARVB	ENST00000406477	human	ensembl	74_37	+1	known	missense	c.316	p.R106C	1.000	superfamily_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVB	HGNC	ENSG00000188677				70	0	0	76	4	5
KIAA1644	0	genome.wustl.edu	37	22	44681394	44681394	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	44681394	44681394	C	T	SNP	KIAA1644	ENST00000381176	human	ensembl	74_37	-1	putative	silent	c.513	p.P171	0.266	NULL	NULL	-	no_errors	KIAA1644	HGNC	ENSG00000138944				102	0	0	62	27	30.3371
NUP50	0	genome.wustl.edu	37	22	45564091	45564091	+	Silent	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	45564091	45564091	A	C	SNP	NUP50	ENST00000347635	human	ensembl	74_37	+1	known	silent	c.33	p.T11	0.981	pfam_NUP2/50/61	pfam_NUP2/50/61,pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	NUP50	HGNC	ENSG00000093000				71	0	0	54	5	8.47458
FAM118A	0	genome.wustl.edu	37	22	45726600	45726600	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	45726600	45726600	C	T	SNP	FAM118A	ENST00000216214	human	ensembl	74_37	+1	known	silent	c.639	p.D213	1.000	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom	-	no_errors	FAM118A	HGNC	ENSG00000100376				37	0	0	34	8	19.0476
CELSR1	0	genome.wustl.edu	37	22	46859655	46859655	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	46859655	46859655	A	T	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.4132	p.C1378S	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				12	0	0	12	6	33.3333
BRD1	0	genome.wustl.edu	37	22	50217616	50217616	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	50217616	50217616	A	C	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	missense	c.350	p.L117R	0.920	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425				100	1	0.990099	67	35	34.3137
TYMP	0	genome.wustl.edu	37	22	50966139	50966139	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	50966139	50966139	A	G	SNP	TYMP	ENST00000252029	human	ensembl	74_37	-1	known	missense	c.524	p.V175A	0.002	pfam_Glycosyl_Trfase_fam3,superfamily_Glycosyl_Trfase_fam3,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	pfam_Glycosyl_Trfase_fam3,pfam_Glycosyl_Trfase_fam3_N_dom,pfam_PYNP_C,superfamily_Glycosyl_Trfase_fam3,superfamily_PYNP_C,superfamily_Glycosyl_Trfase_fam3_N_dom,smart_PYNP_C,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	-	no_errors	TYMP	HGNC	ENSG00000025708				117	0	0	87	10	10.3093
KLHDC7B	0	genome.wustl.edu	37	22	50988017	50988017	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	50988017	50988017	C	T	SNP	KLHDC7B	ENST00000395676	human	ensembl	74_37	+1	known	silent	c.1422	p.D474	0.051	smart_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7B	HGNC	ENSG00000130487				107	0	0	102	9	8.10811
ZBTB11	0	genome.wustl.edu	37	3	101370285	101370285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	101370285	101370285	G	A	SNP	ZBTB11	ENST00000312938	human	ensembl	74_37	-1	known	missense	c.2887	p.H963Y	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB11	HGNC	ENSG00000066422				133	0	0	123	15	10.8696
ATP2B2	0	genome.wustl.edu	37	3	10444026	10444026	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	10444026	10444026	G	A	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	missense	c.404	p.A135V	0.954	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				138	0	0	95	41	30.1471
C3orf17	0	genome.wustl.edu	37	3	112724472	112724472	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	112724472	112724472	T	C	SNP	C3orf17	ENST00000314400	human	ensembl	74_37	-1	known	missense	c.1615	p.T539A	0.006	NULL	NULL	-	no_errors	C3orf17	HGNC	ENSG00000163608				89	0	0	87	7	7.44681
NAA50	0	genome.wustl.edu	37	3	113440776	113440776	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	113440776	113440776	T	G	SNP	NAA50	ENST00000240922	human	ensembl	74_37	-1	known	missense	c.341	p.Q114P	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA50	HGNC	ENSG00000121579				39	0	0	21	8	27.5862
ZBTB20	0	genome.wustl.edu	37	3	114069855	114069855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	114069855	114069855	G	A	SNP	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	missense	c.1070	p.T357M	0.998	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				61	0	0	32	22	40.7407
NR1I2	0	genome.wustl.edu	37	3	119528957	119528957	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	119528957	119528957	G	A	SNP	NR1I2	ENST00000337940	human	ensembl	74_37	+1	known	missense	c.364	p.A122T	0.007	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1I2	HGNC	ENSG00000144852				45	0	0	21	11	34.375
CASR	0	genome.wustl.edu	37	3	121976124	121976124	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	121976124	121976124	T	C	SNP	CASR	ENST00000498619	human	ensembl	74_37	+1	known	missense	c.382	p.F128L	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828				88	0	0	90	9	9.09091
KALRN	0	genome.wustl.edu	37	3	124053260	124053260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	124053260	124053260	G	A	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.1559	p.R520Q	1.000	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				61	0	0	47	11	18.9655
PLXNA1	0	genome.wustl.edu	37	3	126723974	126723974	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	126723974	126723974	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.1785	p.G595	0.214	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				32	0	0	25	10	28.5714
HMCES	0	genome.wustl.edu	37	3	129007805	129007805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	129007805	129007805	C	T	SNP	HMCES	ENST00000383463	human	ensembl	74_37	+1	known	missense	c.292	p.R98C	1.000	pfam_DUF159,superfamily_DUF159	pfam_DUF159,superfamily_DUF159	-	no_errors	HMCES	HGNC	ENSG00000183624				72	0	0	63	4	5.97015
ATP2C1	0	genome.wustl.edu	37	3	130735042	130735042	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	130735042	130735042	C	A	SNP	ATP2C1	ENST00000393221	human	ensembl	74_37	+1	known	missense	c.2873	p.P958H	0.961	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C1	HGNC	ENSG00000017260				86	0	0	71	6	7.79221
MRPL3	0	genome.wustl.edu	37	3	131208833	131208833	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	131208833	131208833	A	T	SNP	MRPL3	ENST00000264995	human	ensembl	74_37	-1	known	missense	c.560	p.I187N	1.000	pfam_Ribosomal_L3,superfamily_Transl_B-barrel,tigrfam_Ribosomal_L3_bac/org-type	pfam_Ribosomal_L3,superfamily_Transl_B-barrel,tigrfam_Ribosomal_L3_bac/org-type	-	no_errors	MRPL3	HGNC	ENSG00000114686				31	0	0	23	12	34.2857
BFSP2	0	genome.wustl.edu	37	3	133169277	133169277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	133169277	133169277	G	A	SNP	BFSP2	ENST00000302334	human	ensembl	74_37	+1	known	missense	c.860	p.R287Q	0.998	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	BFSP2	HGNC	ENSG00000170819				87	0	0	61	19	23.75
COPB2	0	genome.wustl.edu	37	3	139085492	139085492	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	139085492	139085492	C	A	SNP	COPB2	ENST00000333188	human	ensembl	74_37	-1	known	missense	c.1802	p.R601M	1.000	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432				64	0	0	62	7	10.1449
TFDP2	0	genome.wustl.edu	37	3	141688962	141688962	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	141688962	141688962	C	G	SNP	TFDP2	ENST00000489671	human	ensembl	74_37	-1	known	missense	c.685	p.E229Q	1.000	pfam_Transc_factor_DP_C,pirsf_Transcrpt_fac_DP	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcrpt_fac_DP	-	no_errors	TFDP2	HGNC	ENSG00000114126				99	0	0	90	7	7.21649
P2RY14	0	genome.wustl.edu	37	3	150931878	150931878	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	150931878	150931878	A	G	SNP	P2RY14	ENST00000309170	human	ensembl	74_37	-1	known	missense	c.227	p.F76S	1.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_P2Y14_rcpt,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	P2RY14	HGNC	ENSG00000174944				41	0	0	36	17	32.0755
MED12L	0	genome.wustl.edu	37	3	151134107	151134107	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	151134107	151134107	A	G	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.6200	p.Q2067R	0.999	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				38	0	0	36	4	10
ZFYVE20	0	genome.wustl.edu	37	3	15116196	15116196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	15116196	15116196	C	T	SNP	ZFYVE20	ENST00000253699	human	ensembl	74_37	-1	known	missense	c.1448	p.R483H	0.998	pfam_Rbsn	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381				110	0	0	83	23	21.6981
DHX36	0	genome.wustl.edu	37	3	154017707	154017707	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	154017707	154017707	G	A	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.1469	p.A490V	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				93	0	0	95	8	7.76699
DHX36	0	genome.wustl.edu	37	3	154032899	154032899	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	154032899	154032899	A	G	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.539	p.L180S	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				26	0	0	31	4	11.4286
PLCH1	0	genome.wustl.edu	37	3	155203168	155203168	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	155203168	155203168	A	T	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.2975	p.I992N	0.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				60	0	0	55	7	11.2903
C3orf33	0	genome.wustl.edu	37	3	155481323	155481323	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	155481323	155481323	A	C	SNP	C3orf33	ENST00000340171	human	ensembl	74_37	-1	known	missense	c.868	p.F290V	0.772	NULL	superfamily_Staphylococal_nuclease_OB-fold	-	no_errors	C3orf33	HGNC	ENSG00000174928				12	0	0	14	6	30
VEPH1	0	genome.wustl.edu	37	3	157188202	157188202	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	157188202	157188202	G	T	SNP	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	silent	c.255	p.L85	0.999	superfamily_ARM-type_fold	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415				93	0	0	111	6	5.12821
GFM1	0	genome.wustl.edu	37	3	158369926	158369926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	158369926	158369926	C	T	SNP	GFM1	ENST00000486715	human	ensembl	74_37	+1	known	missense	c.731	p.A244V	0.998	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,tigrfam_Transl_elong_EFG/EF2	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827				123	0	0	93	14	13.0841
SLC2A2	0	genome.wustl.edu	37	3	170725002	170725002	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	170725002	170725002	C	T	SNP	SLC2A2	ENST00000314251	human	ensembl	74_37	-1	known	missense	c.547	p.A183T	0.010	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_2,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A2	HGNC	ENSG00000163581				49	0	0	49	13	20.9677
FNDC3B	0	genome.wustl.edu	37	3	171965347	171965347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	171965347	171965347	C	T	SNP	FNDC3B	ENST00000336824	human	ensembl	74_37	+1	known	missense	c.289	p.R97C	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420				141	0	0	163	16	8.93855
CCDC39	0	genome.wustl.edu	37	3	180334112	180334112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	180334112	180334112	G	A	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	missense	c.2626	p.R876C	0.009	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075				43	0	0	46	14	23.3333
EIF2B5	0	genome.wustl.edu	37	3	183857942	183857942	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	183857942	183857942	G	T	SNP	EIF2B5	ENST00000273783	human	ensembl	74_37	+1	known	missense	c.840	p.E280D	1.000	superfamily_Trimer_LpxA-like	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191				40	0	0	33	4	10.8108
MASP1	0	genome.wustl.edu	37	3	186954203	186954203	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	186954203	186954203	G	T	SNP	MASP1	ENST00000296280	human	ensembl	74_37	-1	known	missense	c.1456	p.L486M	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	MASP1	HGNC	ENSG00000127241				66	0	0	53	31	36.9048
MASP1	0	genome.wustl.edu	37	3	186978565	186978565	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	186978565	186978565	C	T	SNP	MASP1	ENST00000296280	human	ensembl	74_37	-1	known	missense	c.511	p.G171S	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	MASP1	HGNC	ENSG00000127241				66	0	0	87	7	7.44681
RTP4	0	genome.wustl.edu	37	3	187088755	187088755	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	187088755	187088755	T	C	SNP	RTP4	ENST00000259030	human	ensembl	74_37	+1	known	missense	c.335	p.M112T	0.000	NULL	NULL	-	no_errors	RTP4	HGNC	ENSG00000136514				34	0	0	24	2	7.69231
ATP13A4	0	genome.wustl.edu	37	3	193158373	193158373	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	193158373	193158373	A	T	SNP	ATP13A4	ENST00000342695	human	ensembl	74_37	-1	known	missense	c.2493	p.S831R	0.996	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A4	HGNC	ENSG00000127249				68	0	0	61	8	11.5942
MUC4	0	genome.wustl.edu	37	3	195486030	195486030	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	195486030	195486030	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.14951	p.T4984M	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				486	0	0	409	50	10.8932
PAK2	0	genome.wustl.edu	37	3	196509660	196509660	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	196509660	196509660	A	G	SNP	PAK2	ENST00000327134	human	ensembl	74_37	+1	known	missense	c.143	p.K48R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK2	HGNC	ENSG00000180370				175	0	0	144	14	8.86076
MFI2	0	genome.wustl.edu	37	3	196735572	196735572	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	196735572	196735572	T	C	SNP	MFI2	ENST00000296350	human	ensembl	74_37	-1	known	missense	c.1706	p.D569G	0.999	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	MFI2	HGNC	ENSG00000163975				57	0	0	48	5	9.43396
CNTN4	0	genome.wustl.edu	37	3	3067853	3067853	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	3067853	3067853	G	A	SNP	CNTN4	ENST00000397461	human	ensembl	74_37	+1	known	silent	c.1554	p.P518	0.028	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN4	HGNC	ENSG00000144619				85	0	0	52	12	18.75
SCN5A	0	genome.wustl.edu	37	3	38595862	38595862	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	38595862	38595862	T	C	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.4721	p.E1574G	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				106	0	0	91	16	14.9533
LRRN1	0	genome.wustl.edu	37	3	3887325	3887325	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	3887325	3887325	C	T	SNP	LRRN1	ENST00000319331	human	ensembl	74_37	+1	known	nonsense	c.1000	p.R334*	0.997	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN1	HGNC	ENSG00000175928				41	0	0	29	13	30.9524
GORASP1	0	genome.wustl.edu	37	3	39142008	39142008	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	39142008	39142008	G	A	SNP	GORASP1	ENST00000489587	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.348	-	-	-	no_errors	GORASP1	HGNC	ENSG00000114745				15	0	0	13	4	23.5294
POMGNT2	0	genome.wustl.edu	37	3	43121611	43121611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	43121611	43121611	C	T	SNP	POMGNT2	ENST00000344697	human	ensembl	74_37	-1	known	missense	c.1313	p.R438Q	1.000	NULL	pfam_Glycosyltransferase_AER61,superfamily_Fibronectin_type3	-	no_errors	POMGNT2	HGNC	ENSG00000144647				30	0	0	21	11	34.375
SUMF1	0	genome.wustl.edu	37	3	4418024	4418024	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	4418024	4418024	A	G	SNP	SUMF1	ENST00000448413	human	ensembl	74_37	-1	known	missense	c.1004	p.M335T	1.000	pfam_FGE_dom,superfamily_C-type_lectin_fold	pfam_FGE_dom,superfamily_C-type_lectin_fold	-	no_errors	SUMF1	HGNC	ENSG00000144455				237	0	0	194	16	7.61905
KLHL18	0	genome.wustl.edu	37	3	47324459	47324459	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	47324459	47324459	G	T	SNP	KLHL18	ENST00000232766	human	ensembl	74_37	+1	known	missense	c.4	p.V2L	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL18	HGNC	ENSG00000114648				28	0	0	18	2	10
MAP4	0	genome.wustl.edu	37	3	47958085	47958085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	47958085	47958085	A	G	SNP	MAP4	ENST00000360240	human	ensembl	74_37	-1	known	missense	c.1232	p.V411A	0.000	NULL	pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849				180	0	0	184	19	9.35961
COL7A1	0	genome.wustl.edu	37	3	48629343	48629343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	48629343	48629343	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.1345	p.R449W	0.985	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				87	0	0	68	31	31.3131
WDR6	0	genome.wustl.edu	37	3	49050093	49050093	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	49050093	49050093	G	A	SNP	WDR6	ENST00000395474	human	ensembl	74_37	+1	known	missense	c.1216	p.V406I	0.953	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252				54	0	0	32	16	33.3333
WDR6	0	genome.wustl.edu	37	3	49050138	49050138	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	49050138	49050138	C	A	SNP	WDR6	ENST00000395474	human	ensembl	74_37	+1	known	missense	c.1261	p.Q421K	1.000	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252				49	0	0	39	4	9.30233
USP19	0	genome.wustl.edu	37	3	49153200	49153200	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	49153200	49153200	G	T	SNP	USP19	ENST00000398888	human	ensembl	74_37	-1	known	missense	c.1340	p.P447H	0.201	NULL	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				85	0	0	68	9	11.6883
LAMB2	0	genome.wustl.edu	37	3	49159273	49159273	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	49159273	49159273	A	G	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	silent	c.4944	p.G1648	0.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				63	0	0	53	4	7.01754
GMPPB	0	genome.wustl.edu	37	3	49759315	49759315	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	49759315	49759315	A	G	SNP	GMPPB	ENST00000308375	human	ensembl	74_37	-1	known	missense	c.1034	p.V345A	1.000	NULL	pfam_NTP_transferase,pfam_Hexapep_transf	-	no_errors	GMPPB	HGNC	ENSG00000173540				76	0	0	66	7	9.58904
TRAIP	0	genome.wustl.edu	37	3	49879890	49879890	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	49879890	49879890	C	A	SNP	TRAIP	ENST00000331456	human	ensembl	74_37	-1	known	nonsense	c.499	p.E167*	1.000	superfamily_Prefoldin	pfam_Znf_C3HC4_RING-type,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRAIP	HGNC	ENSG00000183763				107	0	0	96	6	5.88235
CAMKV	0	genome.wustl.edu	37	3	49898891	49898891	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	49898891	49898891	A	G	SNP	CAMKV	ENST00000477224	human	ensembl	74_37	-1	known	missense	c.422	p.I141T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKV	HGNC	ENSG00000164076				53	0	0	54	4	6.89655
NPRL2	0	genome.wustl.edu	37	3	50385556	50385556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	50385556	50385556	G	A	SNP	NPRL2	ENST00000232501	human	ensembl	74_37	-1	known	missense	c.931	p.R311W	0.994	pfam_NPR2	pfam_NPR2	-	no_errors	NPRL2	HGNC	ENSG00000114388				104	0	0	75	21	21.875
C3orf18	0	genome.wustl.edu	37	3	50603087	50603087	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	50603087	50603087	C	T	SNP	C3orf18	ENST00000357203	human	ensembl	74_37	-1	known	missense	c.44	p.R15H	0.965	NULL	NULL	-	no_errors	C3orf18	HGNC	ENSG00000088543				49	0	0	31	13	29.5455
TLR9	0	genome.wustl.edu	37	3	52257056	52257056	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	52257056	52257056	G	A	SNP	TLR9	ENST00000597542	human	ensembl	74_37	-1	known	missense	c.1348	p.R450C	0.836	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR9	HGNC	ENSG00000239732				142	0	0	120	24	16.6667
NT5DC2	0	genome.wustl.edu	37	3	52568610	52568610	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	52568610	52568610	C	T	SNP	NT5DC2	ENST00000307076	human	ensembl	74_37	-1	known	silent	c.60	p.T20	0.000	pirsf_Pur_nucleotidase	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5DC2	HGNC	ENSG00000168268				163	0	0	109	39	26.3514
ERC2	0	genome.wustl.edu	37	3	55922525	55922525	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	55922525	55922525	G	T	SNP	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	missense	c.2456	p.T819N	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672				147	0	0	128	13	9.21986
PDE12	0	genome.wustl.edu	37	3	57543266	57543266	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	57543266	57543266	G	A	SNP	PDE12	ENST00000311180	human	ensembl	74_37	+1	known	missense	c.1160	p.R387Q	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	PDE12	HGNC	ENSG00000174840				39	0	0	34	8	19.0476
SLMAP	0	genome.wustl.edu	37	3	57743556	57743556	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	57743556	57743556	T	G	SNP	SLMAP	ENST00000428312	human	ensembl	74_37	+1	known	missense	c.178	p.F60V	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLMAP	HGNC	ENSG00000163681				46	0	0	43	4	8.51064
PRICKLE2	0	genome.wustl.edu	37	3	64138947	64138947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	64138947	64138947	C	T	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	missense	c.698	p.R233H	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637				184	0	0	138	13	8.60927
SHQ1	0	genome.wustl.edu	37	3	72799562	72799562	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	72799562	72799562	C	A	SNP	SHQ1	ENST00000325599	human	ensembl	74_37	-1	known	missense	c.1607	p.G536V	0.033	NULL	pfam_SHQ1,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	SHQ1	HGNC	ENSG00000144736				83	0	0	65	22	25.2874
PDZRN3	0	genome.wustl.edu	37	3	73453461	73453461	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	73453461	73453461	A	G	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	missense	c.1004	p.V335A	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				50	0	0	56	6	9.67742
ROBO2	0	genome.wustl.edu	37	3	77651597	77651597	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	77651597	77651597	A	T	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.3091	p.M1031L	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				130	0	0	117	7	5.64516
LMCD1	0	genome.wustl.edu	37	3	8590348	8590348	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	8590348	8590348	T	C	SNP	LMCD1	ENST00000157600	human	ensembl	74_37	+1	known	missense	c.482	p.L161P	1.000	pfam_PET_domain	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMCD1	HGNC	ENSG00000071282				197	0	0	147	14	8.69565
SETD5	0	genome.wustl.edu	37	3	9517751	9517751	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	9517751	9517751	C	T	SNP	SETD5	ENST00000402198	human	ensembl	74_37	+1	known	silent	c.4305	p.V1435	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137				34	0	0	10	7	41.1765
PRRT3	0	genome.wustl.edu	37	3	9990353	9990353	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	9990353	9990353	C	A	SNP	PRRT3	ENST00000411976	human	ensembl	74_37	-1	novel	silent	c.1260	p.G420	0.001	NULL	NULL	-	no_errors	PRRT3	HGNC	ENSG00000163704				102	0	0	89	12	11.8812
ADH5	0	genome.wustl.edu	37	4	100009879	100009879	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	100009879	100009879	G	A	SNP	ADH5	ENST00000508146	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADH5	HGNC	ENSG00000197894				124	0	0	82	12	12.766
ADH4	0	genome.wustl.edu	37	4	100065369	100065369	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	100065369	100065369	C	A	SNP	ADH4	ENST00000265512	human	ensembl	74_37	-1	known	missense	c.5	p.G2V	0.479	superfamily_GroES-like	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH4	HGNC	ENSG00000198099				85	0	0	77	7	8.33333
PPP3CA	0	genome.wustl.edu	37	4	101947156	101947156	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	101947156	101947156	G	A	SNP	PPP3CA	ENST00000394854	human	ensembl	74_37	-1	known	nonsense	c.1432	p.R478*	1.000	NULL	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814				99	0	0	80	6	6.97674
PITX2	0	genome.wustl.edu	37	4	111554122	111554122	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	111554122	111554122	C	T	SNP	PITX2	ENST00000354925	human	ensembl	74_37	-1	known	silent	c.33	p.A11	0.960	pirsf_Homeobox_Pitx/unc30	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PITX2	HGNC	ENSG00000164093				211	0	0	144	43	22.9947
CAMK2D	0	genome.wustl.edu	37	4	114468833	114468833	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	114468833	114468833	G	A	SNP	CAMK2D	ENST00000511664	human	ensembl	74_37	-1	novel	silent	c.381	p.C127	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2D	HGNC	ENSG00000145349				14	0	0	10	3	23.0769
EXOSC9	0	genome.wustl.edu	37	4	122728764	122728764	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	122728764	122728764	T	G	SNP	EXOSC9	ENST00000379663	human	ensembl	74_37	+1	known	missense	c.592	p.F198V	1.000	pfam_ExoRNase_PH_dom2,superfamily_ExoRNase_PH_dom2	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737				118	0	0	99	12	10.8108
BBS7	0	genome.wustl.edu	37	4	122782657	122782657	+	Splice_Site	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	122782657	122782657	A	G	SNP	BBS7	ENST00000264499	human	ensembl	74_37	-1	known	splice_site	c.341+2	e4+2	1.000	-	-	-	no_errors	BBS7	HGNC	ENSG00000138686				25	0	0	45	15	25
KIAA1109	0	genome.wustl.edu	37	4	123160994	123160994	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	123160994	123160994	T	C	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.4157	p.M1386T	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				83	0	0	80	6	6.97674
FAT4	0	genome.wustl.edu	37	4	126242390	126242390	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	126242390	126242390	T	C	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.4824	p.P1608	0.593	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				94	0	0	76	30	28.3019
SLC25A31	0	genome.wustl.edu	37	4	128694557	128694557	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	128694557	128694557	G	T	SNP	SLC25A31	ENST00000281154	human	ensembl	74_37	+1	known	missense	c.776	p.R259L	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	-	no_errors	SLC25A31	HGNC	ENSG00000151475				41	0	0	52	3	5.45455
C4orf33	0	genome.wustl.edu	37	4	130023786	130023786	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	130023786	130023786	C	T	SNP	C4orf33	ENST00000281146	human	ensembl	74_37	+1	known	silent	c.21	p.H7	1.000	NULL	NULL	-	no_errors	C4orf33	HGNC	ENSG00000151470				61	0	0	87	6	6.45161
UVSSA	0	genome.wustl.edu	37	4	1348977	1348977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	1348977	1348977	G	A	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	missense	c.1120	p.V374I	0.002	NULL	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				34	0	0	22	3	12
CRIPAK	0	genome.wustl.edu	37	4	1389008	1389008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	1389008	1389008	G	A	SNP	CRIPAK	ENST00000324803	human	ensembl	74_37	+1	known	missense	c.709	p.G237R	0.033	smart_Post-SET_dom	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979				607	1	0.164474	438	44	9.12863
SLC7A11	0	genome.wustl.edu	37	4	139140496	139140496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	139140496	139140496	C	T	SNP	SLC7A11	ENST00000280612	human	ensembl	74_37	-1	known	missense	c.670	p.A224T	1.000	pfam_AA-permease/SLC12A_dom,pfam_AA_transpt_TM,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease/SLC12A_dom,pfam_AA_transpt_TM,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A11	HGNC	ENSG00000151012				51	0	0	72	4	5.26316
TBC1D9	0	genome.wustl.edu	37	4	141598177	141598177	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	141598177	141598177	G	A	SNP	TBC1D9	ENST00000442267	human	ensembl	74_37	-1	known	silent	c.930	p.H310	1.000	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436				140	0	0	111	11	9.01639
NR3C2	0	genome.wustl.edu	37	4	149356545	149356545	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	149356545	149356545	G	T	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	missense	c.1468	p.P490T	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623				99	0	0	81	6	6.89655
NR3C2	0	genome.wustl.edu	37	4	149357244	149357244	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	149357244	149357244	C	T	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	missense	c.769	p.V257M	0.998	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623				97	0	0	89	6	6.31579
FHDC1	0	genome.wustl.edu	37	4	153895835	153895835	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	153895835	153895835	C	T	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	silent	c.1392	p.H464	0.030	smart_FH2_Formin	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				44	0	0	29	7	19.4444
KIAA0922	0	genome.wustl.edu	37	4	154507424	154507424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	154507424	154507424	C	T	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	missense	c.1375	p.L459F	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210				62	0	0	55	17	23.6111
FGA	0	genome.wustl.edu	37	4	155506728	155506728	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	155506728	155506728	C	T	SNP	FGA	ENST00000302053	human	ensembl	74_37	-1	known	missense	c.1853	p.S618N	0.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGA	HGNC	ENSG00000171560				93	0	0	94	7	6.93069
LRAT	0	genome.wustl.edu	37	4	155670333	155670333	+	RNA	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	155670333	155670333	T	C	SNP	LRAT	ENST00000502474	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.947	-	-	-	no_errors	LRAT	HGNC	ENSG00000121207				94	0	0	95	13	12.037
GUCY1A3	0	genome.wustl.edu	37	4	156651343	156651343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	156651343	156651343	G	A	SNP	GUCY1A3	ENST00000296518	human	ensembl	74_37	+1	known	missense	c.2033	p.G678D	1.000	NULL	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116				67	0	0	65	9	12.1622
GUCY1B3	0	genome.wustl.edu	37	4	156721176	156721176	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	156721176	156721176	G	A	SNP	GUCY1B3	ENST00000264424	human	ensembl	74_37	+1	known	silent	c.1125	p.R375	0.996	pfam_Haem_no_assoc-bd	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1B3	HGNC	ENSG00000061918				38	0	0	40	5	11.1111
SPOCK3	0	genome.wustl.edu	37	4	167675864	167675864	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	167675864	167675864	G	T	SNP	SPOCK3	ENST00000357154	human	ensembl	74_37	-1	known	silent	c.735	p.I245	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK3	HGNC	ENSG00000196104				81	0	0	71	29	29
FBXO8	0	genome.wustl.edu	37	4	175160171	175160171	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	175160171	175160171	A	G	SNP	FBXO8	ENST00000393674	human	ensembl	74_37	-1	known	missense	c.746	p.L249S	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_F-box_dom,smart_Sec7_dom,pfscan_F-box_dom,pfscan_Sec7_dom	-	no_errors	FBXO8	HGNC	ENSG00000164117				37	0	0	44	4	8.33333
CEP44	0	genome.wustl.edu	37	4	175229932	175229932	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	175229932	175229932	A	G	SNP	CEP44	ENST00000426172	human	ensembl	74_37	+1	known	silent	c.600	p.A200	0.000	NULL	NULL	-	no_errors	CEP44	HGNC	ENSG00000164118				51	0	0	50	6	10.7143
STOX2	0	genome.wustl.edu	37	4	184932048	184932048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	184932048	184932048	C	T	SNP	STOX2	ENST00000308497	human	ensembl	74_37	+1	known	missense	c.2057	p.A686V	0.095	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX2	HGNC	ENSG00000173320				14	0	0	20	5	20
TLR3	0	genome.wustl.edu	37	4	186997812	186997812	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	186997812	186997812	C	T	SNP	TLR3	ENST00000296795	human	ensembl	74_37	+1	known	silent	c.39	p.G13	0.016	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342				109	0	0	54	32	37.2093
KLKB1	0	genome.wustl.edu	37	4	187158011	187158011	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	187158011	187158011	A	C	SNP	KLKB1	ENST00000264690	human	ensembl	74_37	+1	known	missense	c.405	p.E135D	0.948	pfam_PAN-1_domain,smart_Apple,pfscan_Pan_app	pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,smart_Apple,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Peptidase_S1,prints_Apple,prints_Peptidase_S1A	-	no_errors	KLKB1	HGNC	ENSG00000164344				60	0	0	68	8	10.5263
WHSC1	0	genome.wustl.edu	37	4	1976611	1976611	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	1976611	1976611	C	A	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	missense	c.3394	p.P1132T	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				111	0	0	111	12	9.7561
POLN	0	genome.wustl.edu	37	4	2082734	2082734	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	2082734	2082734	T	C	SNP	POLN	ENST00000382865	human	ensembl	74_37	-1	known	missense	c.2338	p.M780V	1.000	pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997				142	0	0	110	9	7.56303
GPR125	0	genome.wustl.edu	37	4	22422539	22422539	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	22422539	22422539	A	G	SNP	GPR125	ENST00000334304	human	ensembl	74_37	-1	known	silent	c.1779	p.V593	0.834	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR125	HGNC	ENSG00000152990				271	0	0	251	22	8.05861
PPARGC1A	0	genome.wustl.edu	37	4	23831131	23831131	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	23831131	23831131	A	G	SNP	PPARGC1A	ENST00000264867	human	ensembl	74_37	-1	known	silent	c.507	p.H169	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819				65	0	0	59	6	9.23077
FAM193A	0	genome.wustl.edu	37	4	2701952	2701952	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	2701952	2701952	G	A	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	silent	c.3180	p.A1060	0.000	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				34	0	0	21	8	27.5862
NOP14	0	genome.wustl.edu	37	4	2948140	2948140	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	2948140	2948140	A	G	SNP	NOP14	ENST00000416614	human	ensembl	74_37	-1	known	missense	c.1634	p.V545A	0.998	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269				115	0	0	130	10	7.14286
KLF3	0	genome.wustl.edu	37	4	38696378	38696378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	38696378	38696378	C	T	SNP	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	missense	c.707	p.S236L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				133	0	0	144	9	5.88235
TMEM156	0	genome.wustl.edu	37	4	38990475	38990475	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	38990475	38990475	C	T	SNP	TMEM156	ENST00000381938	human	ensembl	74_37	-1	known	nonsense	c.735	p.W245*	1.000	NULL	NULL	-	no_errors	TMEM156	HGNC	ENSG00000121895				237	0	0	146	50	25.5102
ZNF721	0	genome.wustl.edu	37	4	436908	436908	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	436908	436908	A	G	SNP	ZNF721	ENST00000511833	human	ensembl	74_37	-1	known	missense	c.1348	p.C450R	0.793	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903				31	0	0	42	6	12.5
PIGG	0	genome.wustl.edu	37	4	501310	501310	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	501310	501310	C	T	SNP	PIGG	ENST00000453061	human	ensembl	74_37	+1	known	silent	c.687	p.S229	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227				55	0	0	33	4	10.8108
EVC2	0	genome.wustl.edu	37	4	5687115	5687115	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	5687115	5687115	G	T	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	silent	c.798	p.T266	0.759	pfam_Limbin	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				140	0	0	123	8	6.10687
SRP72	0	genome.wustl.edu	37	4	57340534	57340534	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	57340534	57340534	T	C	SNP	SRP72	ENST00000342756	human	ensembl	74_37	+1	known	missense	c.587	p.M196T	1.000	smart_TPR_repeat	pfam_Signal_recog_part_SRP72_RNA-bd,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SRP72	HGNC	ENSG00000174780				80	0	0	63	10	13.6986
MAN2B2	0	genome.wustl.edu	37	4	6619137	6619137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	6619137	6619137	G	A	SNP	MAN2B2	ENST00000285599	human	ensembl	74_37	+1	known	missense	c.2732	p.R911H	0.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288				117	0	0	74	26	26
CCDC96	0	genome.wustl.edu	37	4	7043253	7043253	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	7043253	7043253	G	A	SNP	CCDC96	ENST00000310085	human	ensembl	74_37	-1	known	silent	c.1413	p.A471	0.972	NULL	NULL	-	no_errors	CCDC96	HGNC	ENSG00000173013				255	0	0	178	70	28.2258
RUFY3	0	genome.wustl.edu	37	4	71588444	71588444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	71588444	71588444	C	T	SNP	RUFY3	ENST00000226328	human	ensembl	74_37	+1	known	missense	c.154	p.P52S	1.000	NULL	pfam_Run,superfamily_Prefoldin,smart_Run,pfscan_Run	-	no_errors	RUFY3	HGNC	ENSG00000018189				114	0	0	100	6	5.66038
PCGF3	0	genome.wustl.edu	37	4	727562	727562	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	727562	727562	C	T	SNP	PCGF3	ENST00000362003	human	ensembl	74_37	+1	known	silent	c.93	p.T31	0.539	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF3	HGNC	ENSG00000185619				89	0	0	66	5	7.04225
MTHFD2L	0	genome.wustl.edu	37	4	75065537	75065537	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	75065537	75065537	A	G	SNP	MTHFD2L	ENST00000395759	human	ensembl	74_37	+1	known	missense	c.478	p.N160D	1.000	pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD2L	HGNC	ENSG00000163738				77	0	0	88	11	11.1111
SH3TC1	0	genome.wustl.edu	37	4	8229226	8229226	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	8229226	8229226	C	T	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	missense	c.1805	p.A602V	0.994	smart_TPR_repeat	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				133	0	0	98	32	24.6154
KLHL8	0	genome.wustl.edu	37	4	88116474	88116474	+	Splice_Site	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	88116474	88116474	A	G	SNP	KLHL8	ENST00000273963	human	ensembl	74_37	-1	known	splice_site	c.216+2	e1+2	0.998	-	-	-	no_errors	KLHL8	HGNC	ENSG00000145332				15	0	0	25	7	21.875
SPARCL1	0	genome.wustl.edu	37	4	88403698	88403698	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	88403698	88403698	T	C	SNP	SPARCL1	ENST00000282470	human	ensembl	74_37	-1	known	missense	c.1546	p.T516A	0.639	pfam_SPARC/Testican_Ca-bd-dom,pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Kazal_dom,pirsf_SPARC-like_p1,pfscan_EF_hand_dom	-	no_errors	SPARCL1	HGNC	ENSG00000152583				60	0	0	57	5	8.06452
SPARCL1	0	genome.wustl.edu	37	4	88411935	88411935	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	88411935	88411935	G	T	SNP	SPARCL1	ENST00000282470	human	ensembl	74_37	-1	known	missense	c.1387	p.P463T	1.000	pfam_Kazal_dom,smart_Kazal_dom,pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Kazal_dom,pirsf_SPARC-like_p1,pfscan_EF_hand_dom	-	no_errors	SPARCL1	HGNC	ENSG00000152583				121	0	0	83	9	9.78261
FAM13A-AS1	0	genome.wustl.edu	37	4	89649843	89649843	+	RNA	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	89649843	89649843	A	G	SNP	FAM13A-AS1	ENST00000500765	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM13A-AS1	HGNC	ENSG00000248019				36	0	0	25	10	28.5714
CCSER1	0	genome.wustl.edu	37	4	91230124	91230124	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	91230124	91230124	G	T	SNP	CCSER1	ENST00000333691	human	ensembl	74_37	+1	known	missense	c.689	p.C230F	1.000	NULL	NULL	-	no_errors	CCSER1	HGNC	ENSG00000184305				22	0	0	14	11	44
STPG2	0	genome.wustl.edu	37	4	98762072	98762072	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	98762072	98762072	C	T	SNP	STPG2	ENST00000295268	human	ensembl	74_37	-1	known	silent	c.1056	p.A352	0.997	NULL	NULL	-	no_errors	STPG2	HGNC	ENSG00000163116				50	0	0	45	6	11.7647
SLCO4C1	0	genome.wustl.edu	37	5	101583012	101583012	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	101583012	101583012	A	G	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	silent	c.1755	p.F585	0.392	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930				72	0	0	90	9	9.09091
MAN2A1	0	genome.wustl.edu	37	5	109103321	109103321	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	109103321	109103321	T	C	SNP	MAN2A1	ENST00000261483	human	ensembl	74_37	+1	known	silent	c.921	p.S307	1.000	pfam_Glyco_hydro_38_N,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893				135	0	0	126	37	22.6994
MCC	0	genome.wustl.edu	37	5	112399756	112399756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	112399756	112399756	C	T	SNP	MCC	ENST00000302475	human	ensembl	74_37	-1	known	missense	c.1568	p.S523N	1.000	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444				71	0	0	61	9	12.8571
SEMA6A	0	genome.wustl.edu	37	5	115803293	115803293	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	115803293	115803293	T	C	SNP	SEMA6A	ENST00000257414	human	ensembl	74_37	-1	known	missense	c.1931	p.H644R	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6A	HGNC	ENSG00000092421				33	0	0	30	4	11.7647
SLC6A18	0	genome.wustl.edu	37	5	1235625	1235625	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	1235625	1235625	G	A	SNP	SLC6A18	ENST00000324642	human	ensembl	74_37	+1	known	missense	c.469	p.A157T	0.005	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport_orphan	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A18	HGNC	ENSG00000164363				50	0	0	27	12	30.7692
CLPTM1L	0	genome.wustl.edu	37	5	1318500	1318500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	1318500	1318500	G	A	SNP	CLPTM1L	ENST00000320895	human	ensembl	74_37	-1	known	missense	c.1601	p.A534V	0.325	NULL	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656				68	0	0	66	4	5.71429
TCF7	0	genome.wustl.edu	37	5	133477913	133477913	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	133477913	133477913	C	G	SNP	TCF7	ENST00000321584	human	ensembl	74_37	+1	known	missense	c.673	p.P225A	0.993	NULL	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7	HGNC	ENSG00000081059				95	0	0	72	36	33.3333
KLHL3	0	genome.wustl.edu	37	5	137056165	137056165	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	137056165	137056165	A	G	SNP	KLHL3	ENST00000309755	human	ensembl	74_37	-1	known	silent	c.123	p.N41	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL3	HGNC	ENSG00000146021				106	0	0	81	35	30.1724
KIF20A	0	genome.wustl.edu	37	5	137515455	137515455	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	137515455	137515455	C	T	SNP	KIF20A	ENST00000394894	human	ensembl	74_37	+1	known	missense	c.86	p.A29V	1.000	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20A	HGNC	ENSG00000112984				91	0	0	88	8	8.33333
REEP2	0	genome.wustl.edu	37	5	137781024	137781024	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	137781024	137781024	A	G	SNP	REEP2	ENST00000378339	human	ensembl	74_37	+1	known	silent	c.525	p.R175	0.454	NULL	pfam_TB2_DP1_HVA22	-	no_errors	REEP2	HGNC	ENSG00000132563				37	0	0	31	13	29.5455
DNAH5	0	genome.wustl.edu	37	5	13901461	13901461	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	13901461	13901461	A	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.1952	p.L651P	0.998	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				22	0	0	29	9	23.6842
SLC4A9	0	genome.wustl.edu	37	5	139740369	139740369	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	139740369	139740369	T	C	SNP	SLC4A9	ENST00000230993	human	ensembl	74_37	+1	known	missense	c.275	p.I92T	0.000	superfamily_PTrfase/Anion_transptr	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073				45	0	0	15	4	21.0526
PCDHA2	0	genome.wustl.edu	37	5	140176295	140176295	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140176295	140176295	G	A	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	silent	c.1746	p.P582	0.001	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969				92	0	0	57	33	36.6667
PCDHA3	0	genome.wustl.edu	37	5	140182244	140182244	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140182244	140182244	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.1462	p.A488T	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				202	0	0	196	12	5.76923
PCDHA8	0	genome.wustl.edu	37	5	140223200	140223200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140223200	140223200	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	missense	c.2294	p.P765L	0.233	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				50	0	0	38	11	22.449
PCDHA13	0	genome.wustl.edu	37	5	140262962	140262962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140262962	140262962	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	missense	c.1109	p.A370V	0.903	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				131	0	0	125	12	8.75912
PCDHA13	0	genome.wustl.edu	37	5	140263639	140263639	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140263639	140263639	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	missense	c.1786	p.A596T	0.987	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				135	0	0	105	12	10.2564
PCDHB5	0	genome.wustl.edu	37	5	140515685	140515685	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140515685	140515685	C	T	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	silent	c.669	p.S223	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				149	0	0	108	43	28.4768
PCDHB5	0	genome.wustl.edu	37	5	140516972	140516972	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140516972	140516972	G	A	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	silent	c.1956	p.S652	0.761	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				61	0	0	58	18	23.6842
PCDHB5	0	genome.wustl.edu	37	5	140517397	140517397	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140517397	140517397	T	C	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.2381	p.L794S	0.005	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				80	0	0	73	7	8.75
PCDHB8	0	genome.wustl.edu	37	5	140559119	140559119	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140559119	140559119	G	A	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.1504	p.A502T	0.588	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				553	0	0	504	48	8.69565
PCDHB16	0	genome.wustl.edu	37	5	140562190	140562190	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140562190	140562190	T	C	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.56	p.V19A	0.016	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				79	0	0	99	7	6.60377
PCDHB10	0	genome.wustl.edu	37	5	140574321	140574321	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140574321	140574321	T	C	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	+1	known	silent	c.2196	p.G732	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324				156	0	0	114	11	8.8
PCDHB14	0	genome.wustl.edu	37	5	140603564	140603564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140603564	140603564	G	A	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.487	p.G163R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				82	0	0	82	8	8.88889
PCDHGA4	0	genome.wustl.edu	37	5	140737100	140737100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140737100	140737100	C	T	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.2333	p.T778M	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576				117	0	0	100	31	23.6641
PCDHGB4	0	genome.wustl.edu	37	5	140769364	140769364	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140769364	140769364	A	C	SNP	PCDHGB4	ENST00000519479	human	ensembl	74_37	+1	known	missense	c.1913	p.Q638P	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953				35	0	0	26	4	13.3333
PCDHGC4	0	genome.wustl.edu	37	5	140864818	140864818	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140864818	140864818	C	T	SNP	PCDHGC4	ENST00000306593	human	ensembl	74_37	+1	known	silent	c.78	p.Y26	0.020	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419				85	0	0	61	11	15.2778
RBM27	0	genome.wustl.edu	37	5	145609441	145609441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	145609441	145609441	G	A	SNP	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	missense	c.557	p.R186H	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				102	1	0.970874	72	24	25
PPP2R2B	0	genome.wustl.edu	37	5	146077585	146077585	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	146077585	146077585	C	T	SNP	PPP2R2B	ENST00000394414	human	ensembl	74_37	-1	known	nonsense	c.489	p.W163*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2B	HGNC	ENSG00000156475				99	0	0	81	6	6.89655
DPYSL3	0	genome.wustl.edu	37	5	146788353	146788353	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	146788353	146788353	T	C	SNP	DPYSL3	ENST00000398514	human	ensembl	74_37	-1	known	missense	c.628	p.T210A	0.779	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657				40	0	0	45	8	15.0943
CSNK1A1	0	genome.wustl.edu	37	5	148886637	148886637	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	148886637	148886637	T	G	SNP	CSNK1A1	ENST00000515768	human	ensembl	74_37	-1	known	missense	c.894	p.E298D	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1A1	HGNC	ENSG00000113712				40	0	0	33	3	8.33333
TIGD6	0	genome.wustl.edu	37	5	149375905	149375905	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	149375905	149375905	T	C	SNP	TIGD6	ENST00000296736	human	ensembl	74_37	-1	known	missense	c.7	p.N3D	0.976	pfscan_HTH_Psq	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD6	HGNC	ENSG00000164296				125	0	0	83	37	30.8333
CSF1R	0	genome.wustl.edu	37	5	149460351	149460351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	149460351	149460351	C	T	SNP	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	missense	c.286	p.A96T	0.017	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578				29	0	0	21	8	27.5862
TCOF1	0	genome.wustl.edu	37	5	149751643	149751643	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	149751643	149751643	G	A	SNP	TCOF1	ENST00000451292	human	ensembl	74_37	+1	known	silent	c.714	p.A238	0.000	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814				41	0	0	30	4	11.7647
SPARC	0	genome.wustl.edu	37	5	151043781	151043781	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	151043781	151043781	G	A	SNP	SPARC	ENST00000231061	human	ensembl	74_37	-1	known	silent	c.750	p.T250	0.011	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Follistatin/Osteonectin_EGF,pfam_Kazal_dom,smart_Fol_N,smart_Kazal_dom	-	no_errors	SPARC	HGNC	ENSG00000113140				21	0	0	28	3	9.67742
ADAM19	0	genome.wustl.edu	37	5	156915296	156915296	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	156915296	156915296	C	T	SNP	ADAM19	ENST00000394020	human	ensembl	74_37	-1	known	missense	c.2533	p.A845T	0.967	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074				221	0	0	153	42	21.5385
MYO10	0	genome.wustl.edu	37	5	16670981	16670981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	16670981	16670981	G	A	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.5537	p.A1846V	0.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				28	0	0	31	6	16.2162
DOCK2	0	genome.wustl.edu	37	5	169506070	169506070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	169506070	169506070	C	T	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.5086	p.R1696W	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				71	0	0	53	25	32.0513
TSPAN17	0	genome.wustl.edu	37	5	176079825	176079825	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	176079825	176079825	G	A	SNP	TSPAN17	ENST00000310032	human	ensembl	74_37	+1	known	missense	c.367	p.D123N	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN17	HGNC	ENSG00000048140				157	1	0.632911	169	19	10.1064
NSD1	0	genome.wustl.edu	37	5	176719126	176719126	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	176719126	176719126	G	A	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.6430	p.A2144T	0.999	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				41	0	0	49	6	10.9091
FAM193B	0	genome.wustl.edu	37	5	176966091	176966091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	176966091	176966091	G	A	SNP	FAM193B	ENST00000514747	human	ensembl	74_37	-1	novel	missense	c.268	p.R90C	1.000	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067				11	0	0	9	3	25
B4GALT7	0	genome.wustl.edu	37	5	177031391	177031391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	177031391	177031391	G	A	SNP	B4GALT7	ENST00000029410	human	ensembl	74_37	+1	known	missense	c.262	p.A88T	0.007	pfam_Galactosyl_T_C	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT7	HGNC	ENSG00000027847				23	0	0	19	11	36.6667
HNRNPAB	0	genome.wustl.edu	37	5	177633848	177633848	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	177633848	177633848	C	A	SNP	HNRNPAB	ENST00000358344	human	ensembl	74_37	+1	known	missense	c.494	p.A165D	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPAB	HGNC	ENSG00000197451				91	0	0	59	20	25.3165
PHYKPL	0	genome.wustl.edu	37	5	177642329	177642329	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	177642329	177642329	T	C	SNP	PHYKPL	ENST00000308158	human	ensembl	74_37	-1	known	missense	c.1030	p.M344V	0.998	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	PHYKPL	HGNC	ENSG00000175309				35	0	0	24	6	20
GRM6	0	genome.wustl.edu	37	5	178413950	178413950	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	178413950	178413950	G	A	SNP	GRM6	ENST00000231188	human	ensembl	74_37	-1	known	silent	c.1389	p.N463	0.319	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM6	HGNC	ENSG00000113262				38	0	0	22	5	18.5185
RUFY1	0	genome.wustl.edu	37	5	178996343	178996343	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	178996343	178996343	G	T	SNP	RUFY1	ENST00000319449	human	ensembl	74_37	+1	known	missense	c.745	p.G249W	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel,pfscan_Znf_RING	-	no_errors	RUFY1	HGNC	ENSG00000176783				186	0	0	119	20	14.3885
BTNL9	0	genome.wustl.edu	37	5	180486592	180486592	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	180486592	180486592	G	A	SNP	BTNL9	ENST00000376842	human	ensembl	74_37	+1	known	silent	c.1341	p.P447	0.001	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTNL9	HGNC	ENSG00000165810				26	0	0	37	14	27.451
ENSG00000248103	0	genome.wustl.edu	37	5	180708604	180708604	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	180708604	180708604	G	A	SNP	ENSG00000248103	ENST00000412295	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	CTC-338M12.9	Clone_based_vega_gene	ENSG00000248103				12	0	0	7	4	36.3636
SDHA	0	genome.wustl.edu	37	5	228384	228384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	228384	228384	G	A	SNP	SDHA	ENST00000264932	human	ensembl	74_37	+1	known	missense	c.706	p.A236T	1.000	pfam_FAD_bind_dom,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	pfam_FAD_bind_dom,pfam_Fum_Rdtase/Succ_DH_flav-like_C,superfamily_Succ_DH/fumarate_Rdtase_cat,superfamily_Fum_Rdtase/Succ_DH_flav-like_C,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	-	no_errors	SDHA	HGNC	ENSG00000073578				72	0	0	69	5	6.75676
CDH10	0	genome.wustl.edu	37	5	24509701	24509701	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	24509701	24509701	G	A	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	silent	c.1230	p.D410	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				40	0	0	31	15	32.6087
MTMR12	0	genome.wustl.edu	37	5	32243648	32243648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	32243648	32243648	C	T	SNP	MTMR12	ENST00000382142	human	ensembl	74_37	-1	known	missense	c.1079	p.S360N	1.000	NULL	pfam_Myotubularin_assoc	-	no_errors	MTMR12	HGNC	ENSG00000150712				78	0	0	87	8	8.42105
NIPBL	0	genome.wustl.edu	37	5	36985317	36985317	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	36985317	36985317	T	A	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	missense	c.2035	p.S679T	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				45	0	0	42	17	28.8136
FYB	0	genome.wustl.edu	37	5	39203057	39203057	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	39203057	39203057	C	T	SNP	FYB	ENST00000540520	human	ensembl	74_37	-1	known	silent	c.36	p.A12	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074				71	0	0	56	27	32.5301
C9	0	genome.wustl.edu	37	5	39311417	39311417	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	39311417	39311417	G	A	SNP	C9	ENST00000263408	human	ensembl	74_37	-1	known	silent	c.933	p.R311	0.002	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600				61	0	0	41	23	35.9375
C6	0	genome.wustl.edu	37	5	41149541	41149541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	41149541	41149541	C	T	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	missense	c.2425	p.D809N	0.000	pfam_Kazal_dom,smart_FacI_MAC	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537				151	0	0	118	45	27.6074
ITGA1	0	genome.wustl.edu	37	5	52227966	52227966	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	52227966	52227966	G	T	SNP	ITGA1	ENST00000282588	human	ensembl	74_37	+1	known	missense	c.2861	p.S954I	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949				32	0	0	17	11	39.2857
OCLN	0	genome.wustl.edu	37	5	68805354	68805354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	68805354	68805354	C	T	SNP	OCLN	ENST00000355237	human	ensembl	74_37	+1	known	missense	c.437	p.A146V	1.000	pfam_Marvel,pirsf_Occludin	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel,pirsf_Occludin,prints_Occludin	-	no_errors	OCLN	HGNC	ENSG00000197822				98	0	0	86	6	6.52174
MCCC2	0	genome.wustl.edu	37	5	70930984	70930984	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	70930984	70930984	A	G	SNP	MCCC2	ENST00000340941	human	ensembl	74_37	+1	known	missense	c.910	p.I304V	0.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	MCCC2	HGNC	ENSG00000131844				68	0	0	61	5	7.57576
CKMT2	0	genome.wustl.edu	37	5	80548680	80548680	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	80548680	80548680	G	T	SNP	CKMT2	ENST00000254035	human	ensembl	74_37	+1	known	missense	c.319	p.G107C	1.000	pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730				168	0	0	139	14	9.15033
GPR98	0	genome.wustl.edu	37	5	89989724	89989724	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	89989724	89989724	G	A	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.7151	p.R2384Q	0.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				18	0	0	16	3	15.7895
ANKRD32	0	genome.wustl.edu	37	5	94030643	94030643	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	94030643	94030643	A	G	SNP	ANKRD32	ENST00000265140	human	ensembl	74_37	+1	known	missense	c.2803	p.T935A	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD32	HGNC	ENSG00000133302				50	0	0	74	8	9.7561
TTC37	0	genome.wustl.edu	37	5	94872520	94872520	+	Splice_Site	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	94872520	94872520	C	T	SNP	TTC37	ENST00000358746	human	ensembl	74_37	-1	known	splice_site	c.751+1	e7+1	1.000	-	-	-	no_errors	TTC37	HGNC	ENSG00000198677				199	0	0	210	16	7.07965
ERAP2	0	genome.wustl.edu	37	5	96224907	96224907	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	96224907	96224907	C	A	SNP	ERAP2	ENST00000437043	human	ensembl	74_37	+1	known	missense	c.868	p.P290T	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP2	HGNC	ENSG00000164308				57	0	0	63	7	10
SIM1	0	genome.wustl.edu	37	6	100897247	100897247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	100897247	100897247	C	T	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.535	p.G179S	1.000	superfamily_PAS	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				46	0	0	27	10	27.027
OSTM1	0	genome.wustl.edu	37	6	108366005	108366005	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	108366005	108366005	T	C	SNP	OSTM1	ENST00000193322	human	ensembl	74_37	-1	known	missense	c.989	p.Q330R	1.000	pfam_Osteopetrosis-assoc_TM_1	pfam_Osteopetrosis-assoc_TM_1	-	no_errors	OSTM1	HGNC	ENSG00000081087				58	0	0	51	7	12.069
CDC40	0	genome.wustl.edu	37	6	110501676	110501676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	110501676	110501676	C	T	SNP	CDC40	ENST00000307731	human	ensembl	74_37	+1	known	missense	c.29	p.A10V	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC40	HGNC	ENSG00000168438				71	0	0	56	7	11.1111
HS3ST5	0	genome.wustl.edu	37	6	114379310	114379310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	114379310	114379310	C	T	SNP	HS3ST5	ENST00000312719	human	ensembl	74_37	-1	known	missense	c.152	p.R51H	0.737	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST5	HGNC	ENSG00000249853				40	0	0	32	6	15.7895
GPRC6A	0	genome.wustl.edu	37	6	117113344	117113344	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	117113344	117113344	T	C	SNP	GPRC6A	ENST00000310357	human	ensembl	74_37	-1	known	silent	c.2742	p.V914	0.000	NULL	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612				144	0	0	171	23	11.8557
ENPP3	0	genome.wustl.edu	37	6	132014640	132014640	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	132014640	132014640	C	T	SNP	ENPP3	ENST00000357639	human	ensembl	74_37	+1	known	nonsense	c.1288	p.R430*	0.916	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269				79	0	0	82	7	7.86517
SLC2A12	0	genome.wustl.edu	37	6	134350539	134350539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	134350539	134350539	C	T	SNP	SLC2A12	ENST00000275230	human	ensembl	74_37	-1	known	missense	c.424	p.V142I	0.672	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A12	HGNC	ENSG00000146411				71	0	0	78	9	10.3448
MYB	0	genome.wustl.edu	37	6	135515019	135515019	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	135515019	135515019	T	C	SNP	MYB	ENST00000341911	human	ensembl	74_37	+1	known	missense	c.806	p.I269T	1.000	pfam_Tscrpt_reg_Wos2-domain	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513				126	0	0	88	31	26.0504
NMBR	0	genome.wustl.edu	37	6	142409703	142409703	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	142409703	142409703	C	T	SNP	NMBR	ENST00000258042	human	ensembl	74_37	-1	known	silent	c.93	p.P31	0.000	prints_NeuroB_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NeuroB_rcpt,prints_Bombsn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NMBR	HGNC	ENSG00000135577				52	0	0	26	13	33.3333
GPR126	0	genome.wustl.edu	37	6	142688974	142688974	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	142688974	142688974	G	A	SNP	GPR126	ENST00000367609	human	ensembl	74_37	+1	known	silent	c.372	p.A124	0.837	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_GPCR_2_secretin-like,pfam_CUB_dom,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Pentaxin,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414				36	0	0	59	4	6.34921
HIVEP2	0	genome.wustl.edu	37	6	143091478	143091478	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	143091478	143091478	G	A	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	silent	c.4398	p.Y1466	0.147	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				84	0	0	51	28	35.443
ADAT2	0	genome.wustl.edu	37	6	143755071	143755071	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	143755071	143755071	C	G	SNP	ADAT2	ENST00000237283	human	ensembl	74_37	-1	known	missense	c.249	p.W83C	1.000	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	ADAT2	HGNC	ENSG00000189007				166	0	0	139	9	6.08108
SHPRH	0	genome.wustl.edu	37	6	146262928	146262928	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	146262928	146262928	A	G	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	missense	c.2321	p.V774A	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				44	0	0	70	5	6.66667
GRM1	0	genome.wustl.edu	37	6	146351348	146351348	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	146351348	146351348	C	T	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.695	p.T232M	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				60	0	0	42	15	26.3158
GRM1	0	genome.wustl.edu	37	6	146755562	146755562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	146755562	146755562	C	T	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.3215	p.P1072L	0.094	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				41	0	0	26	13	33.3333
UST	0	genome.wustl.edu	37	6	149285605	149285605	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	149285605	149285605	T	C	SNP	UST	ENST00000367463	human	ensembl	74_37	+1	known	missense	c.587	p.L196S	1.000	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	UST	HGNC	ENSG00000111962				68	0	0	51	5	8.92857
CCDC170	0	genome.wustl.edu	37	6	151857473	151857473	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	151857473	151857473	G	A	SNP	CCDC170	ENST00000367290	human	ensembl	74_37	+1	known	silent	c.78	p.S26	0.994	NULL	superfamily_Prefoldin,superfamily_Smac_DIABLO-like	-	no_errors	CCDC170	HGNC	ENSG00000120262				79	0	0	69	23	25
SYNE1	0	genome.wustl.edu	37	6	152583314	152583314	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	152583314	152583314	A	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.18825	p.P6275	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				68	0	0	51	5	8.92857
TFB1M	0	genome.wustl.edu	37	6	155579107	155579107	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	155579107	155579107	T	G	SNP	TFB1M	ENST00000367166	human	ensembl	74_37	-1	known	missense	c.904	p.S302R	0.978	NULL	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N	-	no_errors	TFB1M	HGNC	ENSG00000029639				148	0	0	131	10	7.0922
SLC22A2	0	genome.wustl.edu	37	6	160670319	160670319	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	160670319	160670319	G	A	SNP	SLC22A2	ENST00000366953	human	ensembl	74_37	-1	known	silent	c.771	p.Y257	0.974	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A2	HGNC	ENSG00000112499				148	0	0	124	13	9.48905
LPA	0	genome.wustl.edu	37	6	161006078	161006078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	161006078	161006078	G	A	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	missense	c.4289	p.A1430V	0.946	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				266	0	0	172	57	24.8908
PDE10A	0	genome.wustl.edu	37	6	165846524	165846524	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	165846524	165846524	T	A	SNP	PDE10A	ENST00000539869	human	ensembl	74_37	-1	known	missense	c.631	p.I211F	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541				63	0	0	67	5	6.94444
THBS2	0	genome.wustl.edu	37	6	169637338	169637338	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	169637338	169637338	C	T	SNP	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	silent	c.1404	p.V468	0.926	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340				37	0	0	21	9	30
CAP2	0	genome.wustl.edu	37	6	17551823	17551823	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	17551823	17551823	G	T	SNP	CAP2	ENST00000229922	human	ensembl	74_37	+1	known	missense	c.1338	p.Q446H	1.000	pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_C	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP2	HGNC	ENSG00000112186				131	0	0	85	39	31.4516
ZKSCAN8	0	genome.wustl.edu	37	6	28121148	28121148	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	28121148	28121148	G	A	SNP	ZKSCAN8	ENST00000330236	human	ensembl	74_37	+1	known	missense	c.1090	p.A364T	0.951	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN8	HGNC	ENSG00000198315				418	1	0.238663	292	98	25.1282
SCAND3	0	genome.wustl.edu	37	6	28543694	28543694	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	28543694	28543694	G	A	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.788	p.A263V	0.998	NULL	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				111	0	0	81	31	27.6786
LOC401242	0	genome.wustl.edu	37	6	28829611	28829611	+	RNA	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	28829611	28829611	A	G	SNP	LOC401242	ENST00000440244	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	XXbac-BPG308K3.6	Clone_based_vega_gene	ENSG00000225595				22	0	0	17	3	15
HLA-J	0	genome.wustl.edu	37	6	29976188	29976188	+	RNA	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	29976188	29976188	A	G	SNP	HLA-J	ENST00000462773	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.729	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622				31	0	0	28	6	17.6471
BAG6	0	genome.wustl.edu	37	6	31609931	31609931	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	31609931	31609931	C	T	SNP	BAG6	ENST00000404765	human	ensembl	74_37	-1	known	missense	c.2293	p.G765R	1.000	NULL	pfam_DUF3538,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	BAG6	HGNC	ENSG00000204463				110	0	0	107	7	6.14035
SKIV2L	0	genome.wustl.edu	37	6	31936512	31936512	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	31936512	31936512	T	C	SNP	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	missense	c.3119	p.L1040P	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351				143	0	0	120	14	10.4478
NOTCH4	0	genome.wustl.edu	37	6	32166763	32166763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	32166763	32166763	C	T	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	missense	c.4475	p.R1492Q	0.000	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				173	0	0	94	45	32.3741
BRD2	0	genome.wustl.edu	37	6	32942267	32942267	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	32942267	32942267	C	T	SNP	BRD2	ENST00000395289	human	ensembl	74_37	+1	known	silent	c.58	p.L20	0.758	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD2	HGNC	ENSG00000204256				122	0	0	109	12	9.91736
TAPBP	0	genome.wustl.edu	37	6	33272822	33272822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	33272822	33272822	G	A	SNP	TAPBP	ENST00000426633	human	ensembl	74_37	-1	known	missense	c.812	p.A271V	0.997	prints_Tapasin	pfam_Ig_C1-set,pfscan_Ig-like_dom,prints_Tapasin	-	no_errors	TAPBP	HGNC	ENSG00000231925				156	0	0	84	55	39.5683
ITPR3	0	genome.wustl.edu	37	6	33648141	33648141	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	33648141	33648141	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	silent	c.4260	p.C1420	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				66	0	0	39	6	13.3333
ITPR3	0	genome.wustl.edu	37	6	33650343	33650343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	33650343	33650343	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.4519	p.R1507C	0.443	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				72	0	0	62	20	24.3902
C6orf1	0	genome.wustl.edu	37	6	34214513	34214513	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	34214513	34214513	A	G	SNP	C6orf1	ENST00000394990	human	ensembl	74_37	-1	known	silent	c.258	p.L86	0.644	NULL	NULL	-	no_errors	C6orf1	HGNC	ENSG00000186577				38	0	0	54	6	10
PXDC1	0	genome.wustl.edu	37	6	3751713	3751713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	3751713	3751713	C	T	SNP	PXDC1	ENST00000380283	human	ensembl	74_37	-1	known	missense	c.53	p.G18D	1.000	superfamily_Phox	pfam_Phox,superfamily_Phox	-	no_errors	PXDC1	HGNC	ENSG00000168994				30	0	0	15	4	21.0526
KCNK16	0	genome.wustl.edu	37	6	39284590	39284590	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	39284590	39284590	A	T	SNP	KCNK16	ENST00000425054	human	ensembl	74_37	-1	known	missense	c.629	p.L210H	1.000	pfam_2pore_dom_K_chnl_dom	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl	-	no_errors	KCNK16	HGNC	ENSG00000095981				257	0	0	233	16	6.4257
TTBK1	0	genome.wustl.edu	37	6	43226849	43226849	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	43226849	43226849	C	A	SNP	TTBK1	ENST00000259750	human	ensembl	74_37	+1	known	missense	c.1090	p.L364M	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216				94	0	0	60	19	24.0506
TDRD6	0	genome.wustl.edu	37	6	46658738	46658738	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	46658738	46658738	G	T	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	missense	c.2873	p.R958I	0.004	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				63	0	0	72	7	8.86076
DST	0	genome.wustl.edu	37	6	56484076	56484076	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	56484076	56484076	T	C	SNP	DST	ENST00000370765	human	ensembl	74_37	-1	known	missense	c.4756	p.T1586A	1.000	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914				127	0	0	113	6	5.04202
DST	0	genome.wustl.edu	37	6	56484309	56484309	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	56484309	56484309	A	T	SNP	DST	ENST00000370765	human	ensembl	74_37	-1	known	missense	c.4523	p.I1508N	0.006	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914				46	0	0	33	13	28.2609
BAI3	0	genome.wustl.edu	37	6	69653793	69653793	+	Silent	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	69653793	69653793	A	C	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	silent	c.1102	p.R368	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				80	0	0	105	12	10.2564
HTR1B	0	genome.wustl.edu	37	6	78172393	78172393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	78172393	78172393	G	A	SNP	HTR1B	ENST00000369947	human	ensembl	74_37	-1	known	missense	c.728	p.T243M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1B_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_ADR_fam	-	no_errors	HTR1B	HGNC	ENSG00000135312				59	0	0	45	18	28.5714
KIAA1009	0	genome.wustl.edu	37	6	84913717	84913717	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	84913717	84913717	T	C	SNP	KIAA1009	ENST00000403245	human	ensembl	74_37	-1	known	silent	c.669	p.K223	0.013	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315				52	0	0	50	7	12.2807
TBX18	0	genome.wustl.edu	37	6	85453993	85453993	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	85453993	85453993	G	C	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	missense	c.990	p.D330E	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				55	0	0	48	7	12.7273
MDN1	0	genome.wustl.edu	37	6	90360519	90360519	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	90360519	90360519	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.15963	p.A5321	0.001	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				63	0	0	56	18	24.3243
MDN1	0	genome.wustl.edu	37	6	90402711	90402711	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	90402711	90402711	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.10038	p.L3346	0.980	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				31	0	0	29	8	21.6216
MMS22L	0	genome.wustl.edu	37	6	97720928	97720928	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	97720928	97720928	T	C	SNP	MMS22L	ENST00000275053	human	ensembl	74_37	-1	known	silent	c.351	p.S117	0.342	NULL	superfamily_ARM-type_fold	-	no_errors	MMS22L	HGNC	ENSG00000146263				142	0	0	161	9	5.29412
LRCH4	0	genome.wustl.edu	37	7	100175478	100175478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	100175478	100175478	G	A	SNP	LRCH4	ENST00000310300	human	ensembl	74_37	-1	known	missense	c.1006	p.R336W	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH4	HGNC	ENSG00000077454				54	0	0	32	12	27.2727
EPHB4	0	genome.wustl.edu	37	7	100410487	100410487	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	100410487	100410487	A	G	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	missense	c.2000	p.I667T	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411				125	0	0	97	7	6.73077
MUC17	0	genome.wustl.edu	37	7	100678679	100678679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	100678679	100678679	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.3982	p.P1328S	0.007	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				315	0	0	220	76	25.6757
MUC17	0	genome.wustl.edu	37	7	100680822	100680822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	100680822	100680822	G	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.6125	p.R2042Q	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				216	0	0	149	71	32.2727
TRIM56	0	genome.wustl.edu	37	7	100732127	100732127	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	100732127	100732127	G	T	SNP	TRIM56	ENST00000306085	human	ensembl	74_37	+1	known	missense	c.1534	p.G512W	0.469	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871				113	0	0	93	11	10.5769
CUX1	0	genome.wustl.edu	37	7	101837172	101837172	+	Splice_Site	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	101837172	101837172	T	C	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	splice_site	c.1158+2	e13+2	1.000	-	-	-	no_errors	CUX1	HGNC	ENSG00000257923				49	0	0	30	4	11.7647
FBXL13	0	genome.wustl.edu	37	7	102604003	102604003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	102604003	102604003	C	T	SNP	FBXL13	ENST00000313221	human	ensembl	74_37	-1	known	missense	c.701	p.R234Q	0.949	NULL	smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL13	HGNC	ENSG00000161040				70	0	0	59	13	18.0556
COG5	0	genome.wustl.edu	37	7	106876896	106876896	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	106876896	106876896	T	G	SNP	COG5	ENST00000297135	human	ensembl	74_37	-1	known	missense	c.2183	p.Q728P	1.000	NULL	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597				63	0	0	61	8	11.5942
FAM3C	0	genome.wustl.edu	37	7	121019010	121019010	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	121019010	121019010	A	G	SNP	FAM3C	ENST00000359943	human	ensembl	74_37	-1	known	silent	c.72	p.S24	1.000	NULL	NULL	-	no_errors	FAM3C	HGNC	ENSG00000196937				66	0	0	67	7	9.45946
CADPS2	0	genome.wustl.edu	37	7	122194640	122194640	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	122194640	122194640	A	G	SNP	CADPS2	ENST00000449022	human	ensembl	74_37	-1	known	missense	c.1439	p.V480A	1.000	superfamily_C2_dom	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803				44	0	0	52	6	10.3448
GPR37	0	genome.wustl.edu	37	7	124404242	124404242	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	124404242	124404242	C	T	SNP	GPR37	ENST00000303921	human	ensembl	74_37	-1	known	silent	c.789	p.A263	0.257	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37	HGNC	ENSG00000170775				68	0	0	39	12	23.5294
GCC1	0	genome.wustl.edu	37	7	127222705	127222705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	127222705	127222705	C	T	SNP	GCC1	ENST00000321407	human	ensembl	74_37	-1	known	missense	c.1691	p.R564Q	0.992	NULL	pfam_GRIP,superfamily_ARM-type_fold,smart_GRIP,pfscan_GRIP	-	no_errors	GCC1	HGNC	ENSG00000179562				46	0	0	40	9	18.3673
FSCN3	0	genome.wustl.edu	37	7	127235583	127235583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	127235583	127235583	G	A	SNP	FSCN3	ENST00000265825	human	ensembl	74_37	+1	known	missense	c.367	p.V123M	0.996	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN3	HGNC	ENSG00000106328				59	0	0	44	32	42.1053
IMPDH1	0	genome.wustl.edu	37	7	128035288	128035288	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	128035288	128035288	C	A	SNP	IMPDH1	ENST00000338791	human	ensembl	74_37	-1	known	missense	c.1302	p.K434N	1.000	pfam_IMP_DH_GMPRt,pfam_2Npropane_dOase,pfam_FMN-dep_DH,tigrfam_IMP_DH	pfam_IMP_DH_GMPRt,pfam_CBS_dom,pfam_2Npropane_dOase,pfam_FMN-dep_DH,smart_CBS_dom,tigrfam_IMP_DH	-	no_errors	IMPDH1	HGNC	ENSG00000106348				119	0	0	96	9	8.57143
FLNC	0	genome.wustl.edu	37	7	128488118	128488118	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	128488118	128488118	C	T	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.4576	p.R1526C	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				16	0	0	9	4	30.7692
FLNC	0	genome.wustl.edu	37	7	128488733	128488733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	128488733	128488733	C	T	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.4699	p.R1567W	0.976	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				136	0	0	87	21	19.4444
MIR335	0	genome.wustl.edu	37	7	130137938	130137938	+	RNA	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	130137938	130137938	C	A	SNP	MIR335	ENST00000604666	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	hsa-mir-335	miRBase	ENSG00000270823				53	0	0	53	7	11.6667
WEE2	0	genome.wustl.edu	37	7	141418950	141418950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	141418950	141418950	G	A	SNP	WEE2	ENST00000397541	human	ensembl	74_37	+1	known	missense	c.664	p.E222K	0.974	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	-	no_errors	WEE2	HGNC	ENSG00000214102				67	0	0	97	7	6.73077
MGAM	0	genome.wustl.edu	37	7	141747669	141747669	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	141747669	141747669	G	A	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	silent	c.2583	p.T861	0.000	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				25	0	0	12	10	45.4545
CNTNAP2	0	genome.wustl.edu	37	7	146536911	146536911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	146536911	146536911	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.317	p.S106N	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				62	0	0	50	4	7.40741
CUL1	0	genome.wustl.edu	37	7	148427309	148427309	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	148427309	148427309	A	G	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.95	p.Y32C	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				110	0	0	84	14	14.2857
CUL1	0	genome.wustl.edu	37	7	148484179	148484179	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	148484179	148484179	C	T	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	silent	c.1446	p.D482	0.988	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				71	0	0	58	9	13.4328
CUL1	0	genome.wustl.edu	37	7	148489867	148489867	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	148489867	148489867	C	T	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.1856	p.A619V	1.000	pfam_Cullin_N,superfamily_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				34	0	0	28	11	28.2051
ZNF775	0	genome.wustl.edu	37	7	150094892	150094892	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	150094892	150094892	C	T	SNP	ZNF775	ENST00000329630	human	ensembl	74_37	+1	known	silent	c.1323	p.G441	0.119	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF775	HGNC	ENSG00000196456				8	0	0	4	7	63.6364
ABCB8	0	genome.wustl.edu	37	7	150742328	150742328	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	150742328	150742328	C	T	SNP	ABCB8	ENST00000297504	human	ensembl	74_37	+1	known	silent	c.2100	p.G700	0.253	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB8	HGNC	ENSG00000197150				58	0	0	46	23	33.3333
CHPF2	0	genome.wustl.edu	37	7	150935141	150935141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	150935141	150935141	G	A	SNP	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	missense	c.1693	p.A565T	0.998	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100				32	0	0	29	13	30.9524
KMT2C	0	genome.wustl.edu	37	7	151873936	151873936	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	151873936	151873936	T	C	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.8602	p.T2868A	0.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				79	0	0	75	7	8.53659
KMT2C	0	genome.wustl.edu	37	7	151874713	151874713	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	151874713	151874713	G	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	nonsense	c.7825	p.R2609*	0.226	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				113	0	0	110	16	12.6984
HTR5A	0	genome.wustl.edu	37	7	154862764	154862764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	154862764	154862764	C	T	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	missense	c.155	p.A52V	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219				50	0	0	42	6	12.5
LMBR1	0	genome.wustl.edu	37	7	156469082	156469082	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	156469082	156469082	G	A	SNP	LMBR1	ENST00000430825	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LMBR1	HGNC	ENSG00000105983				61	0	0	50	21	29.5775
PTPRN2	0	genome.wustl.edu	37	7	157369377	157369377	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	157369377	157369377	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.2780	p.T927M	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				18	0	0	11	8	42.1053
PSMG3	0	genome.wustl.edu	37	7	1607366	1607366	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	1607366	1607366	T	C	SNP	PSMG3	ENST00000252329	human	ensembl	74_37	-1	known	missense	c.337	p.R113G	0.953	pfam_Proteasome_assmbl_chp_3	pfam_Proteasome_assmbl_chp_3	-	no_errors	PSMG3	HGNC	ENSG00000157778				79	0	0	63	9	12.5
TSPAN13	0	genome.wustl.edu	37	7	16815913	16815913	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	16815913	16815913	C	T	SNP	TSPAN13	ENST00000262067	human	ensembl	74_37	+1	known	silent	c.141	p.G47	0.051	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN13	HGNC	ENSG00000106537				78	0	0	48	17	26.1538
TMEM196	0	genome.wustl.edu	37	7	19765226	19765226	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	19765226	19765226	G	T	SNP	TMEM196	ENST00000405764	human	ensembl	74_37	-1	known	missense	c.370	p.L124I	1.000	NULL	NULL	-	no_errors	TMEM196	HGNC	ENSG00000173452				58	0	0	58	6	9.375
DNAH11	0	genome.wustl.edu	37	7	21627750	21627750	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	21627750	21627750	C	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.1779	p.S593R	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				30	0	0	37	5	11.9048
SNX8	0	genome.wustl.edu	37	7	2309235	2309235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	2309235	2309235	C	T	SNP	SNX8	ENST00000222990	human	ensembl	74_37	-1	known	missense	c.580	p.G194R	0.996	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX8	HGNC	ENSG00000106266				73	0	0	40	14	25.9259
KLHL7	0	genome.wustl.edu	37	7	23205486	23205486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	23205486	23205486	C	T	SNP	KLHL7	ENST00000339077	human	ensembl	74_37	+1	known	missense	c.1106	p.P369L	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL7	HGNC	ENSG00000122550				50	0	0	46	5	9.80392
C7orf31	0	genome.wustl.edu	37	7	25194759	25194759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	25194759	25194759	G	A	SNP	C7orf31	ENST00000283905	human	ensembl	74_37	-1	known	missense	c.466	p.R156C	0.683	NULL	NULL	-	no_errors	C7orf31	HGNC	ENSG00000153790				84	0	0	72	8	10
NFE2L3	0	genome.wustl.edu	37	7	26225102	26225102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	26225102	26225102	G	A	SNP	NFE2L3	ENST00000056233	human	ensembl	74_37	+1	known	missense	c.1784	p.C595Y	1.000	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344				26	0	0	32	3	8.57143
TTYH3	0	genome.wustl.edu	37	7	2687618	2687618	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	2687618	2687618	C	T	SNP	TTYH3	ENST00000258796	human	ensembl	74_37	+1	known	silent	c.652	p.L218	1.000	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH3	HGNC	ENSG00000136295				93	0	0	60	6	9.09091
AMZ1	0	genome.wustl.edu	37	7	2752320	2752320	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	2752320	2752320	C	T	SNP	AMZ1	ENST00000312371	human	ensembl	74_37	+1	known	silent	c.1305	p.D435	0.867	NULL	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ1	HGNC	ENSG00000174945				38	0	0	30	11	26.8293
CARD11	0	genome.wustl.edu	37	7	2976789	2976789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	2976789	2976789	C	T	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	missense	c.1223	p.R408H	0.998	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				105	0	0	63	19	23.1707
FAM188B	0	genome.wustl.edu	37	7	30821830	30821830	+	Splice_Site	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	30821830	30821830	T	C	SNP	FAM188B	ENST00000265299	human	ensembl	74_37	+1	known	splice_site	c.419+2	e3+2	0.985	-	-	-	no_errors	FAM188B	HGNC	ENSG00000106125				30	0	0	22	3	12
CCDC129	0	genome.wustl.edu	37	7	31617485	31617485	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	31617485	31617485	C	T	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	nonsense	c.685	p.R229*	1.000	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				11	0	0	18	3	14.2857
KIAA0895	0	genome.wustl.edu	37	7	36423468	36423468	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	36423468	36423468	C	A	SNP	KIAA0895	ENST00000297063	human	ensembl	74_37	-1	known	nonsense	c.178	p.E60*	0.994	NULL	pfam_DUF1704	-	no_errors	KIAA0895	HGNC	ENSG00000164542				41	0	0	40	8	16.6667
GLI3	0	genome.wustl.edu	37	7	42012169	42012169	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	42012169	42012169	G	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.1870	p.L624I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				57	0	0	38	11	22.449
GLI3	0	genome.wustl.edu	37	7	42063102	42063102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	42063102	42063102	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.1462	p.A488T	0.739	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				70	0	0	57	8	12.3077
SNORA5C	0	genome.wustl.edu	37	7	45144619	45144619	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	45144619	45144619	G	A	SNP	SNORA5C	ENST00000364902	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA5C	HGNC	ENSG00000201772				84	0	0	60	8	11.7647
IGFBP1	0	genome.wustl.edu	37	7	45928343	45928343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	45928343	45928343	C	T	SNP	IGFBP1	ENST00000275525	human	ensembl	74_37	+1	known	missense	c.92	p.A31V	1.000	pfam_IGFBP-like,smart_IGFBP-like	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP1	-	no_errors	IGFBP1	HGNC	ENSG00000146678				17	0	0	11	3	21.4286
TNS3	0	genome.wustl.edu	37	7	47385927	47385927	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	47385927	47385927	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.2309	p.G770E	0.972	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				54	0	0	50	14	21.875
DDC	0	genome.wustl.edu	37	7	50607613	50607613	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	50607613	50607613	C	A	SNP	DDC	ENST00000357936	human	ensembl	74_37	-1	known	missense	c.315	p.W105C	1.000	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437				44	0	0	17	7	29.1667
PDGFA	0	genome.wustl.edu	37	7	550457	550457	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	550457	550457	G	A	SNP	PDGFA	ENST00000354513	human	ensembl	74_37	-1	known	missense	c.442	p.R148C	0.998	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	pfam_PDGF/VEGF_dom,pfam_PDGF_N,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFA	HGNC	ENSG00000197461				24	0	0	12	4	25
ACTB	0	genome.wustl.edu	37	7	5568128	5568128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	5568128	5568128	G	A	SNP	ACTB	ENST00000331789	human	ensembl	74_37	-1	known	missense	c.586	p.R196C	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTB	HGNC	ENSG00000075624				118	0	0	79	30	27.5229
CCT6A	0	genome.wustl.edu	37	7	56126114	56126114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	56126114	56126114	C	T	SNP	CCT6A	ENST00000275603	human	ensembl	74_37	+1	known	missense	c.785	p.A262V	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6A	HGNC	ENSG00000146731				27	0	0	35	5	12.5
ZNF479	0	genome.wustl.edu	37	7	57188194	57188194	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	57188194	57188194	A	G	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	missense	c.928	p.S310P	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				68	0	0	67	4	5.6338
EIF2AK1	0	genome.wustl.edu	37	7	6066563	6066563	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	6066563	6066563	C	T	SNP	EIF2AK1	ENST00000199389	human	ensembl	74_37	-1	known	silent	c.1560	p.L520	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232				94	0	0	70	20	22.2222
SNORA22	0	genome.wustl.edu	37	7	65220567	65220567	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	65220567	65220567	C	T	SNP	SNORA22	ENST00000383907	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	SNORA22	HGNC	ENSG00000206634				84	0	0	85	5	5.55556
GUSB	0	genome.wustl.edu	37	7	65445384	65445384	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	65445384	65445384	C	T	SNP	GUSB	ENST00000304895	human	ensembl	74_37	-1	known	missense	c.223	p.V75M	0.909	pfam_Glyco_hydro_2_N,superfamily_Galactose-bd-like	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919				23	0	0	16	8	33.3333
C7orf26	0	genome.wustl.edu	37	7	6647637	6647637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	6647637	6647637	G	A	SNP	C7orf26	ENST00000344417	human	ensembl	74_37	+1	known	missense	c.1195	p.A399T	0.000	NULL	NULL	-	no_errors	C7orf26	HGNC	ENSG00000146576				77	0	0	57	18	24
FZD9	0	genome.wustl.edu	37	7	72849269	72849269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	72849269	72849269	C	T	SNP	FZD9	ENST00000344575	human	ensembl	74_37	+1	known	missense	c.932	p.T311M	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD9	HGNC	ENSG00000188763				86	0	0	74	31	29.5238
HEATR2	0	genome.wustl.edu	37	7	819634	819634	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	819634	819634	G	A	SNP	HEATR2	ENST00000297440	human	ensembl	74_37	+1	known	missense	c.2284	p.A762T	0.892	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR2	HGNC	ENSG00000164818				36	0	0	18	9	33.3333
GRM3	0	genome.wustl.edu	37	7	86468905	86468905	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	86468905	86468905	G	C	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	missense	c.2075	p.C692S	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				34	0	0	38	4	9.52381
ADAM22	0	genome.wustl.edu	37	7	87759712	87759712	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	87759712	87759712	C	A	SNP	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	missense	c.763	p.H255N	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277				58	0	0	64	7	9.85915
ASB4	0	genome.wustl.edu	37	7	95167036	95167036	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	95167036	95167036	T	C	SNP	ASB4	ENST00000325885	human	ensembl	74_37	+1	known	missense	c.1246	p.Y416H	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB4	HGNC	ENSG00000005981				56	0	0	73	6	7.59494
DLX5	0	genome.wustl.edu	37	7	96653686	96653686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	96653686	96653686	C	T	SNP	DLX5	ENST00000222598	human	ensembl	74_37	-1	known	missense	c.250	p.A84T	0.878	pfam_Distal-less_N	pfam_Distal-less_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX5	HGNC	ENSG00000105880				51	0	0	33	13	28.2609
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99027333	99027333	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	99027333	99027333	C	T	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	missense	c.838	p.A280T	1.000	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919				44	0	0	33	6	15.3846
ZSCAN21	0	genome.wustl.edu	37	7	99654893	99654893	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	99654893	99654893	G	A	SNP	ZSCAN21	ENST00000292450	human	ensembl	74_37	+1	known	silent	c.264	p.L88	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529				56	0	0	46	6	11.5385
VPS13B	0	genome.wustl.edu	37	8	100115270	100115270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	100115270	100115270	G	A	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.502	p.V168I	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				108	0	0	127	37	22.561
VPS13B	0	genome.wustl.edu	37	8	100523354	100523354	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	100523354	100523354	G	A	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.4322	p.G1441D	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				60	0	0	90	7	7.21649
RP1L1	0	genome.wustl.edu	37	8	10466430	10466430	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	10466430	10466430	A	G	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.5178	p.A1726	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				157	0	0	166	13	7.26257
RP1L1	0	genome.wustl.edu	37	8	10467229	10467229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	10467229	10467229	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.4379	p.T1460M	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				82	0	0	77	11	12.5
RP1L1	0	genome.wustl.edu	37	8	10467747	10467747	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	10467747	10467747	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.3861	p.S1287	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				150	0	0	183	12	6.15385
OXR1	0	genome.wustl.edu	37	8	107719362	107719362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	107719362	107719362	G	A	SNP	OXR1	ENST00000442977	human	ensembl	74_37	+1	known	missense	c.1616	p.G539E	1.000	NULL	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830				48	0	0	40	7	14.8936
PKHD1L1	0	genome.wustl.edu	37	8	110474074	110474074	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	110474074	110474074	C	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	silent	c.7320	p.C2440	1.000	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				17	0	0	24	5	17.2414
HAS2	0	genome.wustl.edu	37	8	122627114	122627114	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	122627114	122627114	A	C	SNP	HAS2	ENST00000303924	human	ensembl	74_37	-1	known	missense	c.894	p.D298E	1.000	pfam_Chitin_synth_fng	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961				172	0	0	207	20	8.81057
ASAP1	0	genome.wustl.edu	37	8	131124486	131124486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	131124486	131124486	G	A	SNP	ASAP1	ENST00000357668	human	ensembl	74_37	-1	known	missense	c.2255	p.A752V	0.899	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_errors	ASAP1	HGNC	ENSG00000153317				62	0	0	83	10	10.7527
KCNQ3	0	genome.wustl.edu	37	8	133150155	133150155	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	133150155	133150155	G	A	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	silent	c.1677	p.S559	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				100	0	0	95	21	18.1034
KCNQ3	0	genome.wustl.edu	37	8	133192508	133192508	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	133192508	133192508	A	G	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	missense	c.673	p.S225P	0.999	pfam_Ion_trans_dom	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				119	0	0	104	12	10.3448
TG	0	genome.wustl.edu	37	8	133883659	133883659	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	133883659	133883659	C	G	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.341	p.T114S	0.183	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				137	0	0	142	8	5.33333
TG	0	genome.wustl.edu	37	8	133953742	133953742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	133953742	133953742	C	T	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.5188	p.R1730C	0.085	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				90	0	0	77	24	23.7624
SLA	0	genome.wustl.edu	37	8	134050798	134050798	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	134050798	134050798	A	C	SNP	SLA	ENST00000427060	human	ensembl	74_37	-1	known	missense	c.922	p.F308V	0.609	NULL	pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2	-	no_errors	SLA	HGNC	ENSG00000155926				149	0	0	159	17	9.65909
ZFAT	0	genome.wustl.edu	37	8	135614834	135614834	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	135614834	135614834	C	T	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	silent	c.1128	p.A376	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				85	0	0	83	19	18.6275
COL22A1	0	genome.wustl.edu	37	8	139833603	139833603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	139833603	139833603	C	T	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.1021	p.G341S	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				138	0	0	149	15	9.14634
TSNARE1	0	genome.wustl.edu	37	8	143425535	143425535	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	143425535	143425535	G	A	SNP	TSNARE1	ENST00000307180	human	ensembl	74_37	-1	known	silent	c.537	p.R179	0.000	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045				82	0	0	72	21	22.5806
ARC	0	genome.wustl.edu	37	8	143694607	143694607	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	143694607	143694607	G	T	SNP	ARC	ENST00000356613	human	ensembl	74_37	-1	known	silent	c.1026	p.P342	1.000	NULL	prints_Activity-reg_cytoskelet-assoc	-	no_errors	ARC	HGNC	ENSG00000198576				44	0	0	44	8	15.3846
ENSG00000254741	0	genome.wustl.edu	37	8	144661939	144661939	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	144661939	144661939	G	A	SNP	ENSG00000254741	ENST00000529247	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-661A12.7	Clone_based_vega_gene	ENSG00000254741				242	0	0	226	64	22.069
EPPK1	0	genome.wustl.edu	37	8	144940621	144940621	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	144940621	144940621	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.6801	p.A2267	0.953	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				42	0	0	58	5	7.93651
PLEC	0	genome.wustl.edu	37	8	144991545	144991545	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	144991545	144991545	C	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.12855	p.T4285	0.208	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				84	0	0	89	17	16.0377
PLEC	0	genome.wustl.edu	37	8	144993391	144993391	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	144993391	144993391	T	C	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.11009	p.D3670G	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				148	0	0	180	22	10.8911
PLEC	0	genome.wustl.edu	37	8	144995498	144995498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	144995498	144995498	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.8902	p.R2968W	0.992	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				97	0	0	114	26	18.5714
PLEC	0	genome.wustl.edu	37	8	144995508	144995508	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	144995508	144995508	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.8892	p.D2964	0.889	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				102	0	0	120	12	9.09091
OPLAH	0	genome.wustl.edu	37	8	145108223	145108223	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	145108223	145108223	C	T	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	silent	c.2760	p.L920	1.000	pfam_Hydantoinase_B	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				63	0	0	51	19	27.1429
CPSF1	0	genome.wustl.edu	37	8	145626419	145626419	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	145626419	145626419	G	A	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	silent	c.438	p.D146	0.442	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				30	0	0	21	13	38.2353
MICU3	0	genome.wustl.edu	37	8	16884826	16884826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	16884826	16884826	G	A	SNP	MICU3	ENST00000318063	human	ensembl	74_37	+1	known	missense	c.38	p.R13Q	0.660	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU3	HGNC	ENSG00000155970				44	0	0	40	4	9.09091
CNOT7	0	genome.wustl.edu	37	8	17100550	17100550	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	17100550	17100550	A	G	SNP	CNOT7	ENST00000361272	human	ensembl	74_37	-1	known	missense	c.262	p.Y88H	1.000	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	CNOT7	HGNC	ENSG00000198791				75	0	0	121	11	8.33333
ARHGEF10	0	genome.wustl.edu	37	8	1842674	1842674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	1842674	1842674	C	T	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	missense	c.1451	p.A484V	0.999	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				47	0	0	54	10	15.625
LZTS1	0	genome.wustl.edu	37	8	20110716	20110716	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	20110716	20110716	C	T	SNP	LZTS1	ENST00000265801	human	ensembl	74_37	-1	known	silent	c.726	p.S242	0.000	NULL	NULL	-	no_errors	LZTS1	HGNC	ENSG00000061337				86	0	0	64	29	31.1828
DOK2	0	genome.wustl.edu	37	8	21767412	21767412	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	21767412	21767412	A	C	SNP	DOK2	ENST00000276420	human	ensembl	74_37	-1	known	missense	c.649	p.C217G	1.000	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	DOK2	HGNC	ENSG00000147443				38	0	0	44	15	25.4237
HR	0	genome.wustl.edu	37	8	21978706	21978706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	21978706	21978706	G	A	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	missense	c.2239	p.R747C	0.388	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453				165	0	0	212	20	8.62069
PHYHIP	0	genome.wustl.edu	37	8	22079025	22079025	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	22079025	22079025	G	A	SNP	PHYHIP	ENST00000454243	human	ensembl	74_37	-1	known	silent	c.834	p.H278	0.817	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIP	HGNC	ENSG00000168490				103	0	0	90	25	21.7391
POLR3D	0	genome.wustl.edu	37	8	22105999	22105999	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	22105999	22105999	C	T	SNP	POLR3D	ENST00000518039	human	ensembl	74_37	+1	known	nonsense	c.367	p.R123*	0.660	NULL	NULL	-	no_errors	POLR3D	HGNC	ENSG00000168495				166	0	0	201	15	6.94444
POLR3D	0	genome.wustl.edu	37	8	22106136	22106136	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	22106136	22106136	T	C	SNP	POLR3D	ENST00000397802	human	ensembl	74_37	+1	known	missense	c.629	p.M210T	1.000	NULL	pfam_RPC4	-	no_errors	POLR3D	HGNC	ENSG00000168495				100	0	0	152	12	7.31707
ENSG00000253200	0	genome.wustl.edu	37	8	22473159	22473159	+	RNA	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	22473159	22473159	G	A	SNP	ENSG00000253200	ENST00000521025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-582J16.5	Clone_based_vega_gene	ENSG00000253200				28	0	0	38	6	13.6364
CCAR2	0	genome.wustl.edu	37	8	22476350	22476350	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	22476350	22476350	C	A	SNP	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	missense	c.2343	p.D781E	0.960	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				141	0	0	181	12	6.21762
ENTPD4	0	genome.wustl.edu	37	8	23294634	23294634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	23294634	23294634	C	T	SNP	ENTPD4	ENST00000358689	human	ensembl	74_37	-1	known	missense	c.1187	p.R396Q	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD4	HGNC	ENSG00000197217				77	0	0	74	20	21.2766
ADAM7	0	genome.wustl.edu	37	8	24349501	24349501	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	24349501	24349501	C	A	SNP	ADAM7	ENST00000175238	human	ensembl	74_37	+1	known	missense	c.1442	p.P481H	0.969	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,prints_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206				87	0	0	88	24	21.4286
CHRNA2	0	genome.wustl.edu	37	8	27320543	27320543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	27320543	27320543	C	T	SNP	CHRNA2	ENST00000407991	human	ensembl	74_37	-1	known	missense	c.1417	p.V473M	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA2	HGNC	ENSG00000120903				155	0	0	172	14	7.52688
INTS9	0	genome.wustl.edu	37	8	28638343	28638343	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	28638343	28638343	T	C	SNP	INTS9	ENST00000521022	human	ensembl	74_37	-1	known	missense	c.1267	p.T423A	1.000	pfam_Beta_Casp	pfam_Beta_Casp	-	no_errors	INTS9	HGNC	ENSG00000104299				59	0	0	65	4	5.7971
DCTN6	0	genome.wustl.edu	37	8	30032612	30032612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	30032612	30032612	G	A	SNP	DCTN6	ENST00000221114	human	ensembl	74_37	+1	known	missense	c.100	p.V34M	1.000	superfamily_Trimer_LpxA-like	superfamily_Trimer_LpxA-like	-	no_errors	DCTN6	HGNC	ENSG00000104671				36	0	0	41	5	10.8696
WRN	0	genome.wustl.edu	37	8	30969166	30969166	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	30969166	30969166	T	C	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	silent	c.2124	p.S708	0.947	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				66	0	0	88	17	16.1905
WRN	0	genome.wustl.edu	37	8	30982058	30982058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	30982058	30982058	G	A	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	missense	c.2651	p.R884H	0.000	pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				52	0	0	57	12	17.3913
UNC5D	0	genome.wustl.edu	37	8	35606112	35606112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	35606112	35606112	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.1834	p.V612I	0.994	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				116	0	0	137	30	17.9641
ANK1	0	genome.wustl.edu	37	8	41572500	41572500	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	41572500	41572500	G	A	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	silent	c.1695	p.A565	0.027	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				90	0	0	79	19	19.3878
ANK1	0	genome.wustl.edu	37	8	41573238	41573238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	41573238	41573238	G	A	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.1534	p.R512C	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				81	0	0	76	18	19.1489
IKBKB	0	genome.wustl.edu	37	8	42173805	42173805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	42173805	42173805	C	T	SNP	IKBKB	ENST00000520810	human	ensembl	74_37	+1	known	missense	c.878	p.T293M	0.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365				46	0	0	49	12	19.6721
PRKDC	0	genome.wustl.edu	37	8	48746928	48746928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	48746928	48746928	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.7978	p.G2660R	1.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				91	0	0	128	7	5.18519
MCM4	0	genome.wustl.edu	37	8	48887453	48887453	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	48887453	48887453	C	T	SNP	MCM4	ENST00000262105	human	ensembl	74_37	+1	known	missense	c.2296	p.R766W	0.998	pfam_MCM_DNA-dep_ATPase,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738				97	0	0	98	9	8.41121
NPBWR1	0	genome.wustl.edu	37	8	53852656	53852656	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	53852656	53852656	G	A	SNP	NPBWR1	ENST00000331251	human	ensembl	74_37	+1	known	silent	c.189	p.L63	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729				40	0	0	38	5	11.6279
OPRK1	0	genome.wustl.edu	37	8	54141891	54141891	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	54141891	54141891	A	G	SNP	OPRK1	ENST00000265572	human	ensembl	74_37	-1	known	missense	c.1109	p.L370P	0.000	prints_Kappa_opi_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OPRK1	HGNC	ENSG00000082556				100	0	0	104	10	8.77193
MOS	0	genome.wustl.edu	37	8	57025820	57025820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	57025820	57025820	C	T	SNP	MOS	ENST00000311923	human	ensembl	74_37	-1	known	missense	c.722	p.G241D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOS	HGNC	ENSG00000172680				68	0	0	69	11	13.75
ENSG00000241431	0	genome.wustl.edu	37	8	57501081	57501081	+	RNA	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	57501081	57501081	A	G	SNP	ENSG00000241431	ENST00000464216	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-17A4.1	Clone_based_vega_gene	ENSG00000241431				21	0	0	17	4	19.0476
CHD7	0	genome.wustl.edu	37	8	61654351	61654351	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	61654351	61654351	C	T	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	silent	c.360	p.G120	0.937	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				36	0	0	27	3	10
RRS1	0	genome.wustl.edu	37	8	67342063	67342063	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	67342063	67342063	G	T	SNP	RRS1	ENST00000320270	human	ensembl	74_37	+1	known	missense	c.697	p.G233W	1.000	NULL	pfam_Ribosom_reg	-	no_errors	RRS1	HGNC	ENSG00000179041				17	0	0	27	3	10
ARFGEF1	0	genome.wustl.edu	37	8	68140265	68140265	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	68140265	68140265	T	C	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	missense	c.3524	p.Y1175C	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				44	0	0	66	9	12
PREX2	0	genome.wustl.edu	37	8	69033268	69033268	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	69033268	69033268	C	T	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	silent	c.3708	p.I1236	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				82	0	0	66	16	19.5122
TERF1	0	genome.wustl.edu	37	8	73934527	73934527	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	73934527	73934527	A	C	SNP	TERF1	ENST00000276603	human	ensembl	74_37	+1	known	missense	c.614	p.N205T	0.054	pfam_Telomere_rpt-bd_fac_dimer_dom,superfamily_Telomere_rpt-bd_fac_dimer_dom,pirsf_Telomere_repeat-bd-1/2	pfam_Telomere_rpt-bd_fac_dimer_dom,pfam_SANT/Myb,superfamily_Telomere_rpt-bd_fac_dimer_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	-	no_errors	TERF1	HGNC	ENSG00000147601				44	0	0	63	12	16
CNGB3	0	genome.wustl.edu	37	8	87683188	87683188	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	87683188	87683188	T	G	SNP	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	missense	c.477	p.E159D	0.998	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289				207	0	0	267	19	6.64336
RBM12B	0	genome.wustl.edu	37	8	94746270	94746270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	94746270	94746270	G	A	SNP	RBM12B	ENST00000399300	human	ensembl	74_37	-1	known	missense	c.2369	p.P790L	0.247	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808				50	0	0	62	13	17.3333
RAD54B	0	genome.wustl.edu	37	8	95419749	95419749	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	95419749	95419749	T	G	SNP	RAD54B	ENST00000336148	human	ensembl	74_37	-1	known	missense	c.699	p.K233N	0.756	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275				61	0	0	96	7	6.79612
NR4A3	0	genome.wustl.edu	37	9	102590657	102590657	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	102590657	102590657	G	A	SNP	NR4A3	ENST00000330847	human	ensembl	74_37	+1	known	silent	c.366	p.Q122	0.983	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508				74	0	0	82	6	6.81818
DMRT2	0	genome.wustl.edu	37	9	1056535	1056535	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	1056535	1056535	T	C	SNP	DMRT2	ENST00000302441	human	ensembl	74_37	+1	known	silent	c.948	p.S316	1.000	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT2	HGNC	ENSG00000173253				69	0	0	77	20	20.6186
OR13C5	0	genome.wustl.edu	37	9	107361654	107361654	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	107361654	107361654	A	G	SNP	OR13C5	ENST00000374779	human	ensembl	74_37	-1	known	missense	c.41	p.L14P	0.026	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800				80	0	0	91	17	15.7407
ZNF462	0	genome.wustl.edu	37	9	109689883	109689883	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	109689883	109689883	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	silent	c.3690	p.T1230	0.172	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				259	0	0	287	27	8.59873
ZNF462	0	genome.wustl.edu	37	9	109691126	109691126	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	109691126	109691126	T	C	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.4933	p.S1645P	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				79	0	0	112	7	5.88235
EPB41L4B	0	genome.wustl.edu	37	9	112018740	112018740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	112018740	112018740	G	A	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	missense	c.773	p.A258V	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				128	0	0	124	35	22.0126
PALM2-AKAP2	0	genome.wustl.edu	37	9	112900596	112900596	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	112900596	112900596	A	G	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	silent	c.2772	p.T924	0.976	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				57	0	0	70	4	5.40541
HDHD3	0	genome.wustl.edu	37	9	116136221	116136221	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	116136221	116136221	G	A	SNP	HDHD3	ENST00000238379	human	ensembl	74_37	-1	known	silent	c.414	p.D138	0.966	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IA_REG-2-like,tigrfam_HAD-SF_hydro_IA	pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_hydro_IA_REG-2-like,tigrfam_HAD-SF_hydro_IA	-	no_errors	HDHD3	HGNC	ENSG00000119431				350	0	0	294	94	24.2268
FOXD4	0	genome.wustl.edu	37	9	116842	116842	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	116842	116842	C	T	SNP	FOXD4	ENST00000382500	human	ensembl	74_37	-1	known	silent	c.1278	p.S426	0.001	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4	HGNC	ENSG00000170122				26	0	0	33	3	8.33333
PAPPA	0	genome.wustl.edu	37	9	118950009	118950009	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	118950009	118950009	T	C	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	missense	c.992	p.L331S	0.959	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				53	0	0	61	4	6.15385
MEGF9	0	genome.wustl.edu	37	9	123421695	123421695	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	123421695	123421695	A	G	SNP	MEGF9	ENST00000426959	human	ensembl	74_37	-1	known	missense	c.871	p.C291R	0.990	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF9	HGNC	ENSG00000106780				50	0	0	57	21	26.9231
PHF19	0	genome.wustl.edu	37	9	123636883	123636883	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	123636883	123636883	A	G	SNP	PHF19	ENST00000373896	human	ensembl	74_37	-1	known	missense	c.137	p.V46A	1.000	smart_Tudor	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD	-	no_errors	PHF19	HGNC	ENSG00000119403				123	0	0	106	6	5.35714
C5	0	genome.wustl.edu	37	9	123787797	123787797	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	123787797	123787797	T	C	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	missense	c.935	p.Y312C	0.643	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804				69	0	0	92	9	8.91089
OR1Q1	0	genome.wustl.edu	37	9	125377434	125377434	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	125377434	125377434	C	T	SNP	OR1Q1	ENST00000297913	human	ensembl	74_37	+1	known	silent	c.418	p.L140	0.011	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1Q1	HGNC	ENSG00000165202				124	0	0	163	9	5.23256
RABGAP1	0	genome.wustl.edu	37	9	125746881	125746881	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	125746881	125746881	G	A	SNP	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	missense	c.268	p.G90S	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				59	0	0	80	16	16.6667
OLFML2A	0	genome.wustl.edu	37	9	127563865	127563865	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	127563865	127563865	T	A	SNP	OLFML2A	ENST00000373580	human	ensembl	74_37	+1	known	missense	c.842	p.L281Q	0.994	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2A	HGNC	ENSG00000185585				39	0	0	49	3	5.76923
PPP6C	0	genome.wustl.edu	37	9	127911974	127911974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	127911974	127911974	G	A	SNP	PPP6C	ENST00000451402	human	ensembl	74_37	-1	known	missense	c.1007	p.T336M	1.000	NULL	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP6C	HGNC	ENSG00000119414				60	0	0	73	19	20.6522
MVB12B	0	genome.wustl.edu	37	9	129148907	129148907	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	129148907	129148907	T	C	SNP	MVB12B	ENST00000361171	human	ensembl	74_37	+1	known	missense	c.379	p.F127L	1.000	pfam_FAM125	pfam_FAM125	-	no_errors	MVB12B	HGNC	ENSG00000196814				47	0	0	55	7	11.2903
SLC2A8	0	genome.wustl.edu	37	9	130166038	130166038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	130166038	130166038	G	A	SNP	SLC2A8	ENST00000373371	human	ensembl	74_37	+1	known	missense	c.823	p.V275I	0.133	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A8	HGNC	ENSG00000136856				42	0	0	51	15	22.7273
PIP5KL1	0	genome.wustl.edu	37	9	130688241	130688241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	130688241	130688241	C	T	SNP	PIP5KL1	ENST00000300432	human	ensembl	74_37	-1	known	missense	c.59	p.C20Y	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5KL1	HGNC	ENSG00000167103				48	0	0	49	8	14.0351
LCN2	0	genome.wustl.edu	37	9	130911883	130911883	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	130911883	130911883	C	A	SNP	LCN2	ENST00000372998	human	ensembl	74_37	+1	known	missense	c.79	p.L27M	0.585	superfamily_Calycin-like,prints_N_gelatinase	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_N_gelatinase,prints_PstgldnD_synth,prints_Lipocalin,prints_A1-microglobln	-	no_errors	LCN2	HGNC	ENSG00000148346				90	0	0	86	6	6.52174
CERCAM	0	genome.wustl.edu	37	9	131191243	131191243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	131191243	131191243	G	A	SNP	CERCAM	ENST00000372838	human	ensembl	74_37	+1	known	missense	c.998	p.R333H	1.000	pfam_Glyco_trans_25	pfam_Glyco_trans_25	-	no_errors	CERCAM	HGNC	ENSG00000167123				19	0	0	22	7	24.1379
NTMT1	0	genome.wustl.edu	37	9	132396585	132396585	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	132396585	132396585	G	T	SNP	NTMT1	ENST00000372480	human	ensembl	74_37	+1	known	missense	c.415	p.G139C	1.000	pfam_DUF858_MeTrfase_lik,pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_O_MeTrfase_2,pirsf_DUF858_MeTrfase_lik	pfam_DUF858_MeTrfase_lik,pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_O_MeTrfase_2,pirsf_DUF858_MeTrfase_lik	-	no_errors	NTMT1	HGNC	ENSG00000148335				93	0	0	116	7	5.69106
FNBP1	0	genome.wustl.edu	37	9	132741597	132741597	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	132741597	132741597	T	G	SNP	FNBP1	ENST00000446176	human	ensembl	74_37	-1	known	missense	c.197	p.K66T	1.000	pfam_FCH_dom,superfamily_Ribosomal_S20,smart_FCH_dom	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Ribosomal_S20,superfamily_HR1_rho-bd,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	FNBP1	HGNC	ENSG00000187239				59	0	0	68	6	8.10811
GPR107	0	genome.wustl.edu	37	9	132866711	132866711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	132866711	132866711	G	A	SNP	GPR107	ENST00000372410	human	ensembl	74_37	+1	known	missense	c.1144	p.V382I	1.000	pfam_TM_rcpt_euk,pfam_Intimal_thickness-rel_rcpt	pfam_TM_rcpt_euk,pfam_Intimal_thickness-rel_rcpt	-	no_errors	GPR107	HGNC	ENSG00000148358				60	0	0	64	22	25.5814
POMT1	0	genome.wustl.edu	37	9	134397547	134397547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	134397547	134397547	G	A	SNP	POMT1	ENST00000372228	human	ensembl	74_37	+1	known	missense	c.2005	p.A669T	0.998	NULL	pfam_Glyco_trans_39,pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT1	HGNC	ENSG00000130714				108	1	0.917431	89	33	27.0492
BARHL1	0	genome.wustl.edu	37	9	135462770	135462770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	135462770	135462770	G	A	SNP	BARHL1	ENST00000263610	human	ensembl	74_37	+1	known	missense	c.521	p.R174H	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	BARHL1	HGNC	ENSG00000125492				14	0	0	12	4	25
C9orf9	0	genome.wustl.edu	37	9	135762810	135762810	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	135762810	135762810	C	T	SNP	C9orf9	ENST00000356311	human	ensembl	74_37	+1	known	missense	c.199	p.L67F	1.000	NULL	NULL	-	no_errors	C9orf9	HGNC	ENSG00000165698				169	0	0	147	42	22.2222
OBP2B	0	genome.wustl.edu	37	9	136083638	136083638	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	136083638	136083638	C	T	SNP	OBP2B	ENST00000372032	human	ensembl	74_37	-1	known	silent	c.78	p.G26	0.001	NULL	NULL	-	no_errors	OBP2B	HGNC	ENSG00000171102				40	0	0	36	9	20
SURF6	0	genome.wustl.edu	37	9	136198852	136198852	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	136198852	136198852	G	A	SNP	SURF6	ENST00000372022	human	ensembl	74_37	-1	known	silent	c.939	p.G313	0.000	pfam_Surf6	pfam_Surf6	-	no_errors	SURF6	HGNC	ENSG00000148296				15	0	0	12	4	25
RPL7A	0	genome.wustl.edu	37	9	136217826	136217826	+	RNA	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	136217826	136217826	A	C	SNP	RPL7A	ENST00000492798	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPL7A	HGNC	ENSG00000148303				25	0	0	26	7	21.2121
C9orf96	0	genome.wustl.edu	37	9	136265620	136265620	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	136265620	136265620	G	A	SNP	C9orf96	ENST00000371957	human	ensembl	74_37	+1	known	silent	c.1161	p.L387	0.142	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870				98	0	0	79	24	23.301
ADAMTS13	0	genome.wustl.edu	37	9	136319618	136319618	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	136319618	136319618	C	T	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	silent	c.3126	p.L1042	0.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				89	0	0	75	20	21.0526
ADAMTS13	0	genome.wustl.edu	37	9	136319619	136319619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	136319619	136319619	G	A	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	missense	c.3127	p.D1043N	0.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				89	0	0	68	25	26.8817
SARDH	0	genome.wustl.edu	37	9	136595252	136595252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	136595252	136595252	G	A	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	missense	c.748	p.R250W	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				144	0	0	118	28	19.1781
SARDH	0	genome.wustl.edu	37	9	136599205	136599205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	136599205	136599205	C	T	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	missense	c.91	p.A31T	0.000	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				31	0	0	30	3	9.09091
VAV2	0	genome.wustl.edu	37	9	136662843	136662843	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	136662843	136662843	G	A	SNP	VAV2	ENST00000371850	human	ensembl	74_37	-1	known	nonsense	c.925	p.Q309*	0.999	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293				40	0	0	31	9	22.5
OLFM1	0	genome.wustl.edu	37	9	137982158	137982158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	137982158	137982158	C	T	SNP	OLFM1	ENST00000371793	human	ensembl	74_37	+1	known	missense	c.268	p.R90C	1.000	pfam_Noelin-1	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM1	HGNC	ENSG00000130558				63	0	0	59	8	11.9403
OBP2A	0	genome.wustl.edu	37	9	138438712	138438712	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	138438712	138438712	T	G	SNP	OBP2A	ENST00000340780	human	ensembl	74_37	+1	known	missense	c.161	p.V54G	0.001	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	-	no_errors	OBP2A	HGNC	ENSG00000122136				53	0	0	45	11	19.6429
KCNT1	0	genome.wustl.edu	37	9	138656935	138656935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	138656935	138656935	G	A	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	missense	c.1094	p.R365H	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				42	0	0	42	10	19.2308
GPSM1	0	genome.wustl.edu	37	9	139250158	139250158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	139250158	139250158	C	T	SNP	GPSM1	ENST00000440944	human	ensembl	74_37	+1	known	missense	c.1472	p.P491L	0.997	NULL	pfam_GoLoco_motif,pfam_TPR_1,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM1	HGNC	ENSG00000160360				80	0	0	85	13	13.2653
CARD9	0	genome.wustl.edu	37	9	139262099	139262099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	139262099	139262099	G	A	SNP	CARD9	ENST00000371732	human	ensembl	74_37	-1	known	missense	c.1259	p.T420M	0.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796				11	0	0	9	5	35.7143
SEC16A	0	genome.wustl.edu	37	9	139370070	139370070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	139370070	139370070	C	T	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	missense	c.1998	p.M666I	1.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				33	0	0	36	3	7.69231
NOTCH1	0	genome.wustl.edu	37	9	139393707	139393707	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	139393707	139393707	A	G	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	missense	c.5939	p.L1980P	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt-contain_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				57	0	0	56	4	6.66667
NOTCH1	0	genome.wustl.edu	37	9	139411769	139411769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	139411769	139411769	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	missense	c.1510	p.R504C	1.000	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_Notch,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				34	0	0	20	5	20
FAM69B	0	genome.wustl.edu	37	9	139616709	139616709	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	139616709	139616709	A	G	SNP	FAM69B	ENST00000371692	human	ensembl	74_37	+1	known	missense	c.439	p.T147A	1.000	NULL	pfam_FAM69_kinase_dom	-	no_errors	FAM69B	HGNC	ENSG00000165716				23	0	0	45	3	6.25
C9orf142	0	genome.wustl.edu	37	9	139888236	139888236	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	139888236	139888236	C	T	SNP	C9orf142	ENST00000371620	human	ensembl	74_37	+1	known	silent	c.594	p.G198	0.549	NULL	NULL	-	no_errors	C9orf142	HGNC	ENSG00000148362				69	0	0	48	13	21.3115
ANAPC2	0	genome.wustl.edu	37	9	140069716	140069716	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	140069716	140069716	C	A	SNP	ANAPC2	ENST00000323927	human	ensembl	74_37	-1	known	missense	c.2229	p.Q743H	1.000	NULL	pfam_Cullin_N,pfam_APC_su2_C,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	-	no_errors	ANAPC2	HGNC	ENSG00000176248				38	0	0	39	3	7.14286
ENTPD8	0	genome.wustl.edu	37	9	140329487	140329487	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	140329487	140329487	G	A	SNP	ENTPD8	ENST00000371506	human	ensembl	74_37	-1	known	missense	c.1367	p.A456V	0.151	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD8	HGNC	ENSG00000188833				46	0	0	51	10	16.3934
PNPLA7	0	genome.wustl.edu	37	9	140356813	140356813	+	RNA	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	140356813	140356813	T	A	SNP	PNPLA7	ENST00000492278	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	PNPLA7	HGNC	ENSG00000130653				65	0	0	65	20	23.5294
FREM1	0	genome.wustl.edu	37	9	14859265	14859265	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	14859265	14859265	G	T	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.547	p.P183T	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				104	0	0	108	6	5.26316
CBWD1	0	genome.wustl.edu	37	9	164038	164038	+	Splice_Site	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	164038	164038	C	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	splice_site	c.431-1	e5-1	1.000	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785				108	0	0	181	12	6.21762
CNTLN	0	genome.wustl.edu	37	9	17466781	17466781	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	17466781	17466781	T	C	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	silent	c.3747	p.S1249	0.974	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				60	0	0	84	7	7.69231
FAM154A	0	genome.wustl.edu	37	9	18928992	18928992	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	18928992	18928992	C	T	SNP	FAM154A	ENST00000380534	human	ensembl	74_37	-1	known	silent	c.483	p.Q161	0.872	NULL	NULL	-	no_errors	FAM154A	HGNC	ENSG00000155875				79	0	0	83	10	10.7527
SMARCA2	0	genome.wustl.edu	37	9	2186173	2186173	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	2186173	2186173	G	T	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.4539	p.E1513D	0.999	superfamily_Bromodomain	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				62	0	0	73	7	8.75
RFX3	0	genome.wustl.edu	37	9	3248157	3248157	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	3248157	3248157	G	A	SNP	RFX3	ENST00000382004	human	ensembl	74_37	-1	known	missense	c.1843	p.R615C	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298				40	0	0	42	3	6.66667
DDX58	0	genome.wustl.edu	37	9	32492458	32492458	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	32492458	32492458	G	A	SNP	DDX58	ENST00000379883	human	ensembl	74_37	-1	known	missense	c.502	p.P168S	1.000	superfamily_P-loop_NTPase	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201				61	0	0	75	6	7.40741
TAF1L	0	genome.wustl.edu	37	9	32632915	32632915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	32632915	32632915	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.2663	p.R888H	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				141	0	0	148	34	18.6813
APTX	0	genome.wustl.edu	37	9	32984853	32984853	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	32984853	32984853	A	G	SNP	APTX	ENST00000379819	human	ensembl	74_37	-1	known	silent	c.588	p.V196	1.000	pfam_Histidine_triad_HIT,superfamily_HIT-like,pfscan_HIT-like	pfam_Histidine_triad_HIT,superfamily_HIT-like,superfamily_SMAD_FHA_domain,pfscan_HIT-like	-	no_errors	APTX	HGNC	ENSG00000137074				53	0	0	74	8	9.7561
NFX1	0	genome.wustl.edu	37	9	33294870	33294870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	33294870	33294870	G	A	SNP	NFX1	ENST00000379540	human	ensembl	74_37	+1	known	missense	c.478	p.G160S	0.030	NULL	pfam_Znf_NFX1,pfam_R3H_ss-bd,smart_Znf_RING,smart_Znf_NFX1,smart_R3H_ss-bd,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_R3H_ss-bd	-	no_errors	NFX1	HGNC	ENSG00000086102				59	0	0	87	18	17.1429
NOL6	0	genome.wustl.edu	37	9	33466695	33466695	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	33466695	33466695	C	A	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	missense	c.1963	p.G655C	1.000	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271				58	0	0	66	8	10.8108
NOL6	0	genome.wustl.edu	37	9	33469527	33469527	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	33469527	33469527	G	A	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	silent	c.697	p.L233	1.000	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271				115	0	0	133	8	5.67376
PTENP1	0	genome.wustl.edu	37	9	33675379	33675379	+	RNA	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	33675379	33675379	C	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				17	0	0	21	3	12.5
PRSS3	0	genome.wustl.edu	37	9	33797977	33797977	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	33797977	33797977	C	T	SNP	PRSS3	ENST00000361005	human	ensembl	74_37	+1	known	silent	c.522	p.A174	0.056	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS3	HGNC	ENSG00000010438				120	0	0	142	30	17.4419
KIF24	0	genome.wustl.edu	37	9	34256530	34256530	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	34256530	34256530	G	A	SNP	KIF24	ENST00000379166	human	ensembl	74_37	-1	known	silent	c.3075	p.N1025	0.000	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_P-loop_NTPase,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638				125	1	0.793651	116	43	27.044
KIF24	0	genome.wustl.edu	37	9	34286630	34286630	+	Silent	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	34286630	34286630	C	A	SNP	KIF24	ENST00000379166	human	ensembl	74_37	-1	known	silent	c.1200	p.V400	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_P-loop_NTPase,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638				70	0	0	64	19	22.8916
KIAA1161	0	genome.wustl.edu	37	9	34372050	34372050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	34372050	34372050	G	A	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	missense	c.790	p.R264C	1.000	NULL	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976				42	0	0	31	11	26.1905
UNC13B	0	genome.wustl.edu	37	9	35377503	35377503	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	35377503	35377503	C	T	SNP	UNC13B	ENST00000378496	human	ensembl	74_37	+1	known	missense	c.1627	p.R543W	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722				75	0	0	101	7	6.48148
CA9	0	genome.wustl.edu	37	9	35680810	35680810	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	35680810	35680810	T	C	SNP	CA9	ENST00000378357	human	ensembl	74_37	+1	known	missense	c.1298	p.V433A	0.996	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA9	HGNC	ENSG00000107159				72	0	0	90	16	15.0943
CREB3	0	genome.wustl.edu	37	9	35736119	35736119	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	35736119	35736119	C	G	SNP	CREB3	ENST00000353704	human	ensembl	74_37	+1	known	missense	c.686	p.T229S	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3	HGNC	ENSG00000107175				100	1	0.990099	129	10	7.19424
NPR2	0	genome.wustl.edu	37	9	35793058	35793058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	35793058	35793058	G	A	SNP	NPR2	ENST00000342694	human	ensembl	74_37	+1	known	missense	c.653	p.R218Q	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899				29	0	0	33	13	28.2609
NPR2	0	genome.wustl.edu	37	9	35801943	35801943	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	35801943	35801943	G	A	SNP	NPR2	ENST00000342694	human	ensembl	74_37	+1	known	silent	c.1578	p.S526	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899				133	0	0	108	51	32.0755
RECK	0	genome.wustl.edu	37	9	36117105	36117105	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	36117105	36117105	C	T	SNP	RECK	ENST00000377966	human	ensembl	74_37	+1	known	silent	c.2184	p.H728	0.862	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,superfamily_Prot_inh_PMP,smart_Kazal_dom	-	no_errors	RECK	HGNC	ENSG00000122707				55	0	0	57	13	18.5714
CCIN	0	genome.wustl.edu	37	9	36170316	36170316	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	36170316	36170316	C	T	SNP	CCIN	ENST00000335119	human	ensembl	74_37	+1	known	missense	c.817	p.R273W	1.000	NULL	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	CCIN	HGNC	ENSG00000185972				52	0	0	49	9	15.5172
MELK	0	genome.wustl.edu	37	9	36657353	36657353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	36657353	36657353	C	T	SNP	MELK	ENST00000298048	human	ensembl	74_37	+1	known	missense	c.1169	p.T390I	0.996	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MELK	HGNC	ENSG00000165304				66	0	0	77	5	6.09756
GLIS3	0	genome.wustl.edu	37	9	4117861	4117861	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	4117861	4117861	G	A	SNP	GLIS3	ENST00000381971	human	ensembl	74_37	-1	known	silent	c.1617	p.A539	0.039	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS3	HGNC	ENSG00000107249				99	0	0	122	10	7.57576
AK3	0	genome.wustl.edu	37	9	4719173	4719173	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	4719173	4719173	G	A	SNP	AK3	ENST00000381809	human	ensembl	74_37	-1	known	nonsense	c.406	p.R136*	1.000	pfam_Adenylate_kin,pfam_Adenylate_kinase_lid-dom,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,tigrfam_Adenyl_kin_sub	pfam_Adenylate_kin,pfam_Adenylate_kinase_lid-dom,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	-	no_errors	AK3	HGNC	ENSG00000147853				115	1	0.862069	93	44	32.1168
PGM5	0	genome.wustl.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	70993145	70993145	A	G	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.292	p.I98V	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				52	0	0	76	17	18.2796
KANK1	0	genome.wustl.edu	37	9	711848	711848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	711848	711848	C	T	SNP	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	missense	c.1082	p.T361M	0.924	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104				55	0	0	39	5	11.3636
APBA1	0	genome.wustl.edu	37	9	72131597	72131597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	72131597	72131597	C	T	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	missense	c.530	p.R177H	1.000	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				13	0	0	15	4	21.0526
TMEM261	0	genome.wustl.edu	37	9	7798586	7798586	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	7798586	7798586	T	C	SNP	TMEM261	ENST00000358227	human	ensembl	74_37	-1	known	missense	c.326	p.Y109C	0.050	NULL	NULL	-	no_errors	TMEM261	HGNC	ENSG00000137038				105	0	0	107	10	8.54701
FOXB2	0	genome.wustl.edu	37	9	79635083	79635083	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	79635083	79635083	G	A	SNP	FOXB2	ENST00000376708	human	ensembl	74_37	+1	known	silent	c.513	p.P171	0.997	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head,prints_Antifreeze_1	-	no_errors	FOXB2	HGNC	ENSG00000204612				22	0	0	13	3	18.75
TLE1	0	genome.wustl.edu	37	9	84226773	84226773	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	84226773	84226773	C	T	SNP	TLE1	ENST00000376499	human	ensembl	74_37	-1	known	missense	c.1165	p.A389T	1.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781				45	0	0	48	10	17.2414
SLC28A3	0	genome.wustl.edu	37	9	86900448	86900448	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	86900448	86900448	A	C	SNP	SLC28A3	ENST00000376238	human	ensembl	74_37	-1	known	missense	c.1459	p.S487A	1.000	pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A3	HGNC	ENSG00000197506				47	0	0	102	6	5.55556
DAPK1	0	genome.wustl.edu	37	9	90220046	90220046	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	90220046	90220046	C	T	SNP	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	silent	c.240	p.H80	0.683	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				120	1	0.826446	130	9	6.47482
ANKRD19P	0	genome.wustl.edu	37	9	95599890	95599890	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	95599890	95599890	C	T	SNP	ANKRD19P	ENST00000464387	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ANKRD19P	HGNC	ENSG00000187984				49	0	0	38	10	20.8333
ERCC6L2	0	genome.wustl.edu	37	9	98684626	98684626	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	98684626	98684626	A	G	SNP	ERCC6L2	ENST00000437817	human	ensembl	74_37	+1	known	missense	c.805	p.S269G	1.000	pfam_SNF2_N,pfam_HDA_complex_subunit-2/3,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L2	HGNC	ENSG00000182150				46	0	0	53	7	11.6667
NUTM2G	0	genome.wustl.edu	37	9	99694495	99694495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	99694495	99694495	G	A	SNP	NUTM2G	ENST00000372322	human	ensembl	74_37	+1	known	missense	c.508	p.V170M	0.000	NULL	NULL	-	no_errors	NUTM2G	HGNC	ENSG00000188152				71	0	0	103	6	5.50459
NUTM2G	0	genome.wustl.edu	37	9	99697671	99697671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	99697671	99697671	C	T	SNP	NUTM2G	ENST00000372322	human	ensembl	74_37	+1	known	missense	c.775	p.R259W	0.030	NULL	NULL	-	no_errors	NUTM2G	HGNC	ENSG00000188152				138	0	0	102	45	30.6122
CSTF2	0	genome.wustl.edu	37	X	100078931	100078931	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	100078931	100078931	A	T	SNP	CSTF2	ENST00000415585	human	ensembl	74_37	+1	known	missense	c.501	p.Q167H	0.998	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2	HGNC	ENSG00000101811				154	0	0	142	12	7.79221
TRMT2B	0	genome.wustl.edu	37	X	100292924	100292924	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	100292924	100292924	G	T	SNP	TRMT2B	ENST00000372935	human	ensembl	74_37	-1	known	silent	c.420	p.L140	1.000	NULL	pfam_U5_MeTrfase,pfam_Small_mtfrase_dom	-	no_errors	TRMT2B	HGNC	ENSG00000188917				397	0	0	277	94	25.3369
TMEM35	0	genome.wustl.edu	37	X	100349693	100349693	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	100349693	100349693	G	A	SNP	TMEM35	ENST00000372930	human	ensembl	74_37	+1	known	silent	c.252	p.G84	0.383	NULL	NULL	-	no_errors	TMEM35	HGNC	ENSG00000126950				197	0	0	155	10	6.06061
CENPI	0	genome.wustl.edu	37	X	100400187	100400187	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	100400187	100400187	A	C	SNP	CENPI	ENST00000372927	human	ensembl	74_37	+1	known	missense	c.1700	p.K567T	0.638	NULL	pfam_CENP-I	-	no_errors	CENPI	HGNC	ENSG00000102384				147	0	0	118	9	7.08661
ARMCX3	0	genome.wustl.edu	37	X	100880023	100880023	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	100880023	100880023	T	C	SNP	ARMCX3	ENST00000341189	human	ensembl	74_37	+1	known	silent	c.54	p.A18	1.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,pfscan_Armadillo	-	no_errors	ARMCX3	HGNC	ENSG00000102401				73	0	0	73	8	9.87654
GLRA4	0	genome.wustl.edu	37	X	102962291	102962291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	102962291	102962291	C	T	SNP	GLRA4	ENST00000372617	human	ensembl	74_37	-1	known	missense	c.1235	p.R412Q	1.000	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA4	HGNC	ENSG00000188828				87	0	0	58	19	24.6753
TEX13A	0	genome.wustl.edu	37	X	104464985	104464985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	104464985	104464985	C	T	SNP	TEX13A	ENST00000413579	human	ensembl	74_37	-1	known	missense	c.97	p.E33K	0.584	NULL	pfam_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	TEX13A	HGNC	ENSG00000133149				75	0	0	53	10	15.873
RNF128	0	genome.wustl.edu	37	X	105970509	105970509	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	105970509	105970509	C	T	SNP	RNF128	ENST00000255499	human	ensembl	74_37	+1	known	silent	c.366	p.R122	1.000	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135				67	0	0	49	17	25.7576
MORC4	0	genome.wustl.edu	37	X	106184843	106184843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	106184843	106184843	G	A	SNP	MORC4	ENST00000355610	human	ensembl	74_37	-1	known	missense	c.2680	p.R894W	0.976	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131				62	0	0	30	17	36.1702
COL4A5	0	genome.wustl.edu	37	X	107866040	107866040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	107866040	107866040	G	A	SNP	COL4A5	ENST00000328300	human	ensembl	74_37	+1	known	missense	c.2902	p.E968K	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153				46	0	0	49	15	23.4375
IRS4	0	genome.wustl.edu	37	X	107976205	107976205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	107976205	107976205	C	T	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	missense	c.3370	p.A1124T	0.000	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				86	0	0	65	8	10.9589
IRS4	0	genome.wustl.edu	37	X	107979509	107979509	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	107979509	107979509	T	C	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	silent	c.66	p.A22	0.927	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				85	0	0	38	22	36.6667
GUCY2F	0	genome.wustl.edu	37	X	108708392	108708392	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	108708392	108708392	A	G	SNP	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	silent	c.1011	p.P337	0.127	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890				156	0	0	150	9	5.66038
RGAG1	0	genome.wustl.edu	37	X	109694908	109694908	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	109694908	109694908	C	A	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	missense	c.1063	p.P355T	0.000	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978				348	0	0	317	25	7.30994
RGAG1	0	genome.wustl.edu	37	X	109696506	109696506	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	109696506	109696506	A	G	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	silent	c.2661	p.L887	0.000	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978				215	0	0	212	13	5.77778
MSL3	0	genome.wustl.edu	37	X	11778460	11778460	+	Splice_Site	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	11778460	11778460	T	C	SNP	MSL3	ENST00000483645	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	MSL3	HGNC	ENSG00000005302				23	0	0	14	5	26.3158
IL13RA1	0	genome.wustl.edu	37	X	117907898	117907898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	117907898	117907898	G	A	SNP	IL13RA1	ENST00000371666	human	ensembl	74_37	+1	known	missense	c.1066	p.V356I	0.000	NULL	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA1	HGNC	ENSG00000131724				222	0	0	181	57	23.9496
KIAA1210	0	genome.wustl.edu	37	X	118222607	118222607	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	118222607	118222607	A	G	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	silent	c.2586	p.T862	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423				34	0	0	32	3	8.57143
SLC25A5	0	genome.wustl.edu	37	X	118603924	118603924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	118603924	118603924	C	T	SNP	SLC25A5	ENST00000317881	human	ensembl	74_37	+1	known	missense	c.412	p.R138C	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	-	no_errors	SLC25A5	HGNC	ENSG00000005022				131	0	0	142	14	8.97436
GRIA3	0	genome.wustl.edu	37	X	122538696	122538696	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	122538696	122538696	C	T	SNP	GRIA3	ENST00000264357	human	ensembl	74_37	+1	known	silent	c.1431	p.D477	0.623	pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675				228	1	0.436681	237	14	5.57769
DCAF12L2	0	genome.wustl.edu	37	X	125299634	125299634	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	125299634	125299634	G	T	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	missense	c.274	p.L92M	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354				73	0	0	52	10	16.129
DCAF12L1	0	genome.wustl.edu	37	X	125686437	125686437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	125686437	125686437	G	A	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	missense	c.155	p.A52V	0.400	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889				77	0	0	71	17	19.3182
GPR112	0	genome.wustl.edu	37	X	135390962	135390962	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	135390962	135390962	A	C	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.26	p.K9T	0.931	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				150	0	0	140	13	8.49673
BRS3	0	genome.wustl.edu	37	X	135574170	135574170	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	135574170	135574170	T	A	SNP	BRS3	ENST00000370648	human	ensembl	74_37	+1	known	missense	c.836	p.L279Q	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Bombesin_rcpt_3,prints_Bombsn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	BRS3	HGNC	ENSG00000102239				141	0	0	94	34	26.5625
OFD1	0	genome.wustl.edu	37	X	13785292	13785292	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	13785292	13785292	A	G	SNP	OFD1	ENST00000340096	human	ensembl	74_37	+1	known	missense	c.2646	p.I882M	0.000	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651				80	0	0	70	5	6.66667
GPM6B	0	genome.wustl.edu	37	X	13803832	13803832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	13803832	13803832	C	T	SNP	GPM6B	ENST00000316715	human	ensembl	74_37	-1	known	missense	c.277	p.G93S	1.000	pfam_Myelin_PLP,prints_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6B	HGNC	ENSG00000046653				73	0	0	42	21	33.3333
MAGEC3	0	genome.wustl.edu	37	X	140985571	140985571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	140985571	140985571	G	A	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	missense	c.1885	p.A629T	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509				128	0	0	88	20	18.5185
SLITRK2	0	genome.wustl.edu	37	X	144905442	144905442	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	144905442	144905442	A	G	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	missense	c.1499	p.N500S	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				146	0	0	122	11	8.27068
MIR506	0	genome.wustl.edu	37	X	146312328	146312328	+	RNA	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	146312328	146312328	A	C	SNP	MIR506	ENST00000384998	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR506	HGNC	ENSG00000207731				147	0	0	81	38	31.9328
AFF2	0	genome.wustl.edu	37	X	148049194	148049194	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	148049194	148049194	A	C	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	missense	c.3239	p.K1080T	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				59	0	0	49	7	12.5
MAGEA12	0	genome.wustl.edu	37	X	151900176	151900176	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	151900176	151900176	T	C	SNP	MAGEA12	ENST00000357916	human	ensembl	74_37	-1	known	missense	c.625	p.I209V	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401				221	0	0	230	17	6.88259
ATP2B3	0	genome.wustl.edu	37	X	152818575	152818575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	152818575	152818575	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.1906	p.E636K	1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				76	0	0	56	18	24.3243
ABCD1	0	genome.wustl.edu	37	X	153006123	153006123	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	153006123	153006123	A	G	SNP	ABCD1	ENST00000218104	human	ensembl	74_37	+1	known	missense	c.1730	p.E577G	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_FA_transporter	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	-	no_errors	ABCD1	HGNC	ENSG00000101986				170	0	0	136	11	7.48299
PLXNB3	0	genome.wustl.edu	37	X	153038720	153038720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	153038720	153038720	G	A	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	missense	c.3011	p.R1004H	0.712	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				47	0	0	24	7	22.5806
HCFC1	0	genome.wustl.edu	37	X	153225829	153225829	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	153225829	153225829	A	G	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	missense	c.941	p.L314P	0.998	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				42	0	0	38	5	11.6279
IRAK1	0	genome.wustl.edu	37	X	153281508	153281508	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	153281508	153281508	G	A	SNP	IRAK1	ENST00000369980	human	ensembl	74_37	-1	known	missense	c.1277	p.T426M	0.001	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216				131	0	0	68	27	28.4211
PIGA	0	genome.wustl.edu	37	X	15349630	15349630	+	Silent	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	15349630	15349630	G	A	SNP	PIGA	ENST00000333590	human	ensembl	74_37	-1	known	silent	c.423	p.H141	1.000	pfam_PIGA_GPI_anchor_biosynthesis	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195				49	0	0	41	25	37.8788
TKTL1	0	genome.wustl.edu	37	X	153539311	153539311	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	153539311	153539311	G	T	SNP	TKTL1	ENST00000369915	human	ensembl	74_37	+1	known	nonsense	c.475	p.G159*	1.000	pfam_Transketolase_N,pfam_DH_E1	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350				102	0	0	73	11	13.0952
RAB39B	0	genome.wustl.edu	37	X	154490316	154490316	+	Silent	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	154490316	154490316	G	T	SNP	RAB39B	ENST00000369454	human	ensembl	74_37	-1	known	silent	c.414	p.A138	0.962	pfam_Small_GTPase,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB39B	HGNC	ENSG00000155961				80	0	0	72	16	18.1818
RAB39B	0	genome.wustl.edu	37	X	154493486	154493486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	154493486	154493486	C	T	SNP	RAB39B	ENST00000369454	human	ensembl	74_37	-1	known	missense	c.88	p.E30K	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB39B	HGNC	ENSG00000155961				223	0	0	153	38	19.8953
ACE2	0	genome.wustl.edu	37	X	15596275	15596275	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	15596275	15596275	C	T	SNP	ACE2	ENST00000252519	human	ensembl	74_37	-1	known	missense	c.1234	p.A412T	1.000	pfam_Peptidase_M2,prints_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE2	HGNC	ENSG00000130234				79	0	0	100	9	8.25688
AKAP17A	0	genome.wustl.edu	37	X	1719900	1719900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	1719900	1719900	G	A	SNP	AKAP17A	ENST00000313871	human	ensembl	74_37	+1	known	missense	c.1501	p.A501T	0.000	NULL	NULL	-	no_errors	AKAP17A	HGNC	ENSG00000197976				9	0	0	12	3	20
BEND2	0	genome.wustl.edu	37	X	18221757	18221757	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	18221757	18221757	T	C	SNP	BEND2	ENST00000380033	human	ensembl	74_37	-1	known	silent	c.771	p.V257	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324				142	1	0.699301	100	11	9.90991
RS1	0	genome.wustl.edu	37	X	18660170	18660170	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	18660170	18660170	A	C	SNP	RS1	ENST00000379984	human	ensembl	74_37	-1	known	missense	c.629	p.I210S	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	RS1	HGNC	ENSG00000102104				130	0	0	68	14	17.0732
GPR64	0	genome.wustl.edu	37	X	19031936	19031936	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	19031936	19031936	C	T	SNP	GPR64	ENST00000379869	human	ensembl	74_37	-1	known	missense	c.967	p.E323K	0.002	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698				181	0	0	156	25	13.8122
GPR64	0	genome.wustl.edu	37	X	19041547	19041547	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	19041547	19041547	C	T	SNP	GPR64	ENST00000379869	human	ensembl	74_37	-1	known	missense	c.535	p.A179T	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698				56	0	0	43	4	8.51064
PDHA1	0	genome.wustl.edu	37	X	19375712	19375712	+	RNA	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	19375712	19375712	G	T	SNP	PDHA1	ENST00000478795	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDHA1	HGNC	ENSG00000131828				169	1	0.588235	149	15	9.14634
CNKSR2	0	genome.wustl.edu	37	X	21627197	21627197	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	21627197	21627197	C	T	SNP	CNKSR2	ENST00000379510	human	ensembl	74_37	+1	known	silent	c.2154	p.C718	0.976	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970				40	0	0	42	4	8.69565
MAGEB18	0	genome.wustl.edu	37	X	26157824	26157824	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	26157824	26157824	G	T	SNP	MAGEB18	ENST00000325250	human	ensembl	74_37	+1	known	missense	c.722	p.R241M	0.005	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB18	HGNC	ENSG00000176774				37	0	0	27	3	10
ARSD	0	genome.wustl.edu	37	X	2840009	2840009	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	2840009	2840009	G	A	SNP	ARSD	ENST00000381154	human	ensembl	74_37	-1	known	missense	c.251	p.A84V	0.991	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSD	HGNC	ENSG00000006756				71	0	0	37	17	31.4815
IL1RAPL1	0	genome.wustl.edu	37	X	29973260	29973260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	29973260	29973260	C	T	SNP	IL1RAPL1	ENST00000302196	human	ensembl	74_37	+1	known	missense	c.1414	p.R472W	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306				148	0	0	64	29	31.1828
IL1RAPL1	0	genome.wustl.edu	37	X	29973572	29973572	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	29973572	29973572	A	T	SNP	IL1RAPL1	ENST00000302196	human	ensembl	74_37	+1	known	missense	c.1726	p.S576C	1.000	NULL	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306				38	0	0	33	6	15.3846
TAB3	0	genome.wustl.edu	37	X	30849602	30849602	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	30849602	30849602	A	G	SNP	TAB3	ENST00000288422	human	ensembl	74_37	-1	known	missense	c.2081	p.F694S	1.000	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625				38	0	0	31	3	8.82353
FAM47B	0	genome.wustl.edu	37	X	34961020	34961020	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	34961020	34961020	A	G	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	silent	c.72	p.K24	0.001	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				22	0	0	25	4	13.7931
PRKX	0	genome.wustl.edu	37	X	3573188	3573188	+	Splice_Site	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	3573188	3573188	A	G	SNP	PRKX	ENST00000262848	human	ensembl	74_37	-1	known	splice_site	c.599+2	e3+2	0.993	-	-	-	no_errors	PRKX	HGNC	ENSG00000183943				119	0	0	111	12	9.7561
USP9X	0	genome.wustl.edu	37	X	41089041	41089041	+	Silent	SNP	A	A	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	41089041	41089041	A	G	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	silent	c.7440	p.K2480	0.145	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				73	0	0	48	29	37.6623
ZNF157	0	genome.wustl.edu	37	X	47269695	47269695	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	47269695	47269695	T	C	SNP	ZNF157	ENST00000377073	human	ensembl	74_37	+1	known	silent	c.93	p.D31	0.440	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF157	HGNC	ENSG00000147117				185	0	0	161	13	7.47126
SYN1	0	genome.wustl.edu	37	X	47478894	47478894	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	47478894	47478894	C	T	SNP	SYN1	ENST00000295987	human	ensembl	74_37	-1	known	silent	c.234	p.S78	1.000	NULL	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN1	HGNC	ENSG00000008056				17	0	0	16	4	20
ELK1	0	genome.wustl.edu	37	X	47498485	47498485	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	47498485	47498485	G	A	SNP	ELK1	ENST00000247161	human	ensembl	74_37	-1	known	missense	c.463	p.R155C	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK1	HGNC	ENSG00000126767				11	0	0	7	3	30
TBC1D25	0	genome.wustl.edu	37	X	48417710	48417710	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	48417710	48417710	C	T	SNP	TBC1D25	ENST00000376771	human	ensembl	74_37	+1	known	silent	c.681	p.G227	0.102	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354				32	0	0	20	5	20
HDAC6	0	genome.wustl.edu	37	X	48681196	48681196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	48681196	48681196	G	A	SNP	HDAC6	ENST00000444343	human	ensembl	74_37	+1	known	missense	c.2546	p.R849Q	0.136	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631				55	0	0	32	12	27.2727
CCNB3	0	genome.wustl.edu	37	X	50052659	50052659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	50052659	50052659	C	T	SNP	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	missense	c.1490	p.T497I	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				38	0	0	47	5	9.61538
ENSG00000232593	0	genome.wustl.edu	37	X	53172242	53172242	+	RNA	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	53172242	53172242	C	T	SNP	ENSG00000232593	ENST00000604849	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-258C19.5	Clone_based_vega_gene	ENSG00000232593				164	0	0	109	46	29.6774
KDM5C	0	genome.wustl.edu	37	X	53247093	53247093	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	53247093	53247093	C	T	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	missense	c.407	p.R136Q	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				44	0	0	46	5	9.80392
SMC1A	0	genome.wustl.edu	37	X	53436412	53436412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	53436412	53436412	C	T	SNP	SMC1A	ENST00000322213	human	ensembl	74_37	-1	known	missense	c.1277	p.R426Q	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501				136	0	0	88	35	28.4553
HUWE1	0	genome.wustl.edu	37	X	53586416	53586416	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	53586416	53586416	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.7814	p.R2605H	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				67	0	0	37	29	43.9394
PHF8	0	genome.wustl.edu	37	X	54044103	54044103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	54044103	54044103	G	A	SNP	PHF8	ENST00000357988	human	ensembl	74_37	-1	known	missense	c.553	p.H185Y	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943				75	0	0	53	15	22.0588
FAM120C	0	genome.wustl.edu	37	X	54162023	54162023	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	54162023	54162023	T	C	SNP	FAM120C	ENST00000375180	human	ensembl	74_37	-1	known	missense	c.1273	p.R425G	0.961	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083				23	0	0	22	7	24.1379
FGD1	0	genome.wustl.edu	37	X	54482797	54482797	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	54482797	54482797	C	A	SNP	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	missense	c.1698	p.E566D	0.997	superfamily_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302				43	0	0	49	3	5.76923
FGD1	0	genome.wustl.edu	37	X	54482983	54482983	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	54482983	54482983	C	T	SNP	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	missense	c.1654	p.A552T	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302				58	0	0	42	7	14.2857
PAGE2	0	genome.wustl.edu	37	X	55116967	55116967	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	55116967	55116967	A	C	SNP	PAGE2	ENST00000374968	human	ensembl	74_37	+1	known	missense	c.117	p.E39D	0.001	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE2	HGNC	ENSG00000234068				37	0	0	31	4	11.4286
USP51	0	genome.wustl.edu	37	X	55515232	55515232	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	55515232	55515232	C	T	SNP	USP51	ENST00000500968	human	ensembl	74_37	-1	known	silent	c.141	p.A47	0.000	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP51	HGNC	ENSG00000247746				49	0	0	33	10	23.2558
ZXDB	0	genome.wustl.edu	37	X	57619668	57619668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	57619668	57619668	C	T	SNP	ZXDB	ENST00000374888	human	ensembl	74_37	+1	known	missense	c.1187	p.A396V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDB	HGNC	ENSG00000198455				66	0	0	77	24	23.7624
VCX3A	0	genome.wustl.edu	37	X	6451812	6451812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	6451812	6451812	C	T	SNP	VCX3A	ENST00000381089	human	ensembl	74_37	-1	known	missense	c.535	p.E179K	0.546	NULL	NULL	-	no_errors	VCX3A	HGNC	ENSG00000169059				291	1	0.342466	206	73	26.1649
FAM155B	0	genome.wustl.edu	37	X	68748853	68748853	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	68748853	68748853	G	A	SNP	FAM155B	ENST00000252338	human	ensembl	74_37	+1	known	nonsense	c.879	p.W293*	1.000	NULL	NULL	-	no_errors	FAM155B	HGNC	ENSG00000130054				48	0	0	44	7	13.7255
NLGN3	0	genome.wustl.edu	37	X	70384072	70384072	+	Silent	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	70384072	70384072	C	T	SNP	NLGN3	ENST00000358741	human	ensembl	74_37	+1	known	silent	c.807	p.S269	0.984	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338				55	0	0	62	6	8.82353
STS	0	genome.wustl.edu	37	X	7177678	7177678	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	7177678	7177678	T	C	SNP	STS	ENST00000217961	human	ensembl	74_37	+1	known	missense	c.686	p.L229P	0.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	STS	HGNC	ENSG00000101846				74	0	0	68	7	9.33333
CDX4	0	genome.wustl.edu	37	X	72667571	72667571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	72667571	72667571	G	A	SNP	CDX4	ENST00000373514	human	ensembl	74_37	+1	known	missense	c.482	p.R161H	1.000	pfam_Caudal_activation_dom	pfam_Caudal_activation_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX4	HGNC	ENSG00000131264				122	0	0	77	10	11.4943
ATRX	0	genome.wustl.edu	37	X	76937066	76937066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	76937066	76937066	G	A	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.3682	p.P1228S	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				157	1	0.632911	150	43	22.2798
PGK1	0	genome.wustl.edu	37	X	77381299	77381299	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	77381299	77381299	C	A	SNP	PGK1	ENST00000373316	human	ensembl	74_37	+1	known	missense	c.1226	p.P409H	1.000	superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK1	HGNC	ENSG00000102144				421	0	0	340	36	9.57447
VCX	0	genome.wustl.edu	37	X	7811949	7811949	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	7811949	7811949	G	T	SNP	VCX	ENST00000381059	human	ensembl	74_37	+1	known	missense	c.513	p.E171D	0.996	NULL	NULL	-	no_errors	VCX	HGNC	ENSG00000182583				194	0	0	170	19	10.0529
SH3BGRL	0	genome.wustl.edu	37	X	80532615	80532615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	80532615	80532615	G	A	SNP	SH3BGRL	ENST00000373212	human	ensembl	74_37	+1	known	missense	c.178	p.A60T	1.000	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGRL	HGNC	ENSG00000131171				56	0	0	44	6	12
KAL1	0	genome.wustl.edu	37	X	8522075	8522075	+	Silent	SNP	T	T	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	8522075	8522075	T	C	SNP	KAL1	ENST00000262648	human	ensembl	74_37	-1	known	silent	c.1272	p.R424	0.028	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_WAP-type_4-diS_core	-	no_errors	KAL1	HGNC	ENSG00000011201				44	0	0	36	7	16.2791
FAM133A	0	genome.wustl.edu	37	X	92964422	92964422	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	92964422	92964422	G	T	SNP	FAM133A	ENST00000322139	human	ensembl	74_37	+1	known	missense	c.4	p.G2W	0.026	NULL	NULL	-	no_errors	FAM133A	HGNC	ENSG00000179083				24	0	0	23	5	17.8571
PCDH19	0	genome.wustl.edu	37	X	99663156	99663156	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	99663156	99663156	C	T	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	missense	c.440	p.R147H	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				139	0	0	102	42	29.1667
CDC14A	0	genome.wustl.edu	37	1	100889837	100889837	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	100889837	100889837	C	-	DEL	CDC14A	ENST00000361544	human	ensembl	74_37	+1	known	frame_shift_del	c.369	p.Y126fs	0.021	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335				102	0	0	106	12	10.1695
VCAM1	0	genome.wustl.edu	37	1	101203693	101203694	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	101203693	101203694	AA	-	DEL	VCAM1	ENST00000294728	human	ensembl	74_37	+1	known	frame_shift_del	c.2074_2075	p.K692fs	0.000:0.011	NULL	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692				197	0	0	207	41	16.5323
CSF1	0	genome.wustl.edu	37	1	110466431	110466431	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	110466431	110466431	C	-	DEL	CSF1	ENST00000329608	human	ensembl	74_37	+1	known	frame_shift_del	c.1188	p.P398fs	0.001	pfam_MCSF-1,pirsf_MCSF-1	pfam_MCSF-1,superfamily_4_helix_cytokine-like_core,pirsf_MCSF-1	-	no_errors	CSF1	HGNC	ENSG00000184371				88	0	0	88	5	5.37634
ENSG00000226849	0	genome.wustl.edu	37	1	11132250	11132251	+	RNA	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	11132250	11132251	-	A	INS	ENSG00000226849	ENST00000452378	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP4-635E18.7	Clone_based_vega_gene	ENSG00000226849				41	0	0	39	12	23.5294
ADORA3	0	genome.wustl.edu	37	1	112028335	112028335	+	RNA	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	112028335	112028335	C	-	DEL	ADORA3	ENST00000472933	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADORA3	HGNC	ENSG00000121933				39	0	0	47	10	17.5439
SYCP1	0	genome.wustl.edu	37	1	115520223	115520224	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	115520223	115520224	-	A	INS	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_ins	c.2368_2369	p.D793fs	0.772:0.777	NULL	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				16	0	0	10	4	28.5714
SYCP1	0	genome.wustl.edu	37	1	115527421	115527421	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	115527421	115527421	A	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.2635	p.K881fs	0.018	NULL	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				109	0	0	125	13	9.42029
CA14	0	genome.wustl.edu	37	1	150234562	150234563	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	150234562	150234563	CT	-	DEL	CA14	ENST00000369111	human	ensembl	74_37	+1	known	frame_shift_del	c.262_263	p.L90fs	1.000:1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA14	HGNC	ENSG00000118298				162	0	0	141	10	6.62252
HORMAD1	0	genome.wustl.edu	37	1	150686529	150686529	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	150686529	150686529	A	-	DEL	HORMAD1	ENST00000476530	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	HORMAD1	HGNC	ENSG00000143452				62	0	0	66	21	24.1379
KCNN3	0	genome.wustl.edu	37	1	154842106	154842106	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	154842106	154842106	G	-	DEL	KCNN3	ENST00000271915	human	ensembl	74_37	-1	novel	frame_shift_del	c.335	p.P112fs	0.918	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603				36	0	0	20	3	13.0435
TRIM46	0	genome.wustl.edu	37	1	155150501	155150501	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	155150501	155150501	G	-	DEL	TRIM46	ENST00000334634	human	ensembl	74_37	+1	known	frame_shift_del	c.933	p.E312fs	0.995	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462				68	0	0	43	9	17.3077
HDGF	0	genome.wustl.edu	37	1	156715104	156715104	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	156715104	156715104	A	-	DEL	HDGF	ENST00000368206	human	ensembl	74_37	-1	known	frame_shift_del	c.197	p.F66fs	1.000	pfam_PWWP_dom	pfam_PWWP_dom	-	no_errors	HDGF	HGNC	ENSG00000143321				40	0	0	20	9	31.0345
ARHGEF11	0	genome.wustl.edu	37	1	156939121	156939121	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	156939121	156939121	C	-	DEL	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	frame_shift_del	c.778	p.D260fs	1.000	NULL	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				27	0	0	26	3	10.3448
DCAF8	0	genome.wustl.edu	37	1	160249609	160249609	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	160249609	160249609	T	-	DEL	DCAF8	ENST00000608310	human	ensembl	74_37	-1	known	frame_shift_del	c.357	p.E120fs	1.000	pfam_Pex19	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716				52	0	0	76	4	5
ALDH9A1	0	genome.wustl.edu	37	1	165634376	165634376	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	165634376	165634376	A	-	DEL	ALDH9A1	ENST00000463610	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ALDH9A1	HGNC	ENSG00000143149				22	0	0	23	9	28.125
PRRC2C	0	genome.wustl.edu	37	1	171491345	171491347	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	171491345	171491347	TCC	-	DEL	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	in_frame_del	c.780_782	p.P262in_frame_del	1.000:1.000:1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523				90	0	0	104	15	12.605
HMCN1	0	genome.wustl.edu	37	1	186024782	186024782	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	186024782	186024782	A	-	DEL	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	frame_shift_del	c.7120	p.K2375fs	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				158	0	0	153	12	7.27273
RNPEP	0	genome.wustl.edu	37	1	201966518	201966518	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	201966518	201966518	C	-	DEL	RNPEP	ENST00000295640	human	ensembl	74_37	+1	known	frame_shift_del	c.926	p.C311fs	0.999	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEP	HGNC	ENSG00000176393				200	0	0	147	9	5.76923
USP48	0	genome.wustl.edu	37	1	22084139	22084139	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	22084139	22084139	A	-	DEL	USP48	ENST00000489108	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	USP48	HGNC	ENSG00000090686				54	0	0	46	10	17.8571
DUSP10	0	genome.wustl.edu	37	1	221875662	221875663	+	RNA	DEL	AA	AA	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	221875662	221875663	AA	-	DEL	DUSP10	ENST00000468085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040:0.067	-	-	-	no_errors	DUSP10	HGNC	ENSG00000143507				17	0	0	18	13	41.9355
CAPN2	0	genome.wustl.edu	37	1	223934727	223934727	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	223934727	223934727	G	-	DEL	CAPN2	ENST00000295006	human	ensembl	74_37	+1	known	frame_shift_del	c.589	p.G198fs	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN2	HGNC	ENSG00000162909				119	0	0	116	13	10.0775
GALNT2	0	genome.wustl.edu	37	1	230372414	230372414	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	230372414	230372414	G	-	DEL	GALNT2	ENST00000366672	human	ensembl	74_37	+1	known	frame_shift_del	c.550	p.A185fs	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT2	HGNC	ENSG00000143641				75	0	0	73	15	17.0455
TCEB3	0	genome.wustl.edu	37	1	24078404	24078404	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	24078404	24078404	A	-	DEL	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	frame_shift_del	c.1387	p.N465fs	0.998	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007				107	0	0	103	9	8.03571
ZNF124	0	genome.wustl.edu	37	1	247319909	247319909	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	247319909	247319909	T	-	DEL	ZNF124	ENST00000543802	human	ensembl	74_37	-1	known	frame_shift_del	c.1015	p.T339fs	0.935	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF124	HGNC	ENSG00000196418				41	0	0	48	5	9.43396
OR11L1	0	genome.wustl.edu	37	1	248004563	248004563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	248004563	248004563	A	-	DEL	OR11L1	ENST00000355784	human	ensembl	74_37	-1	known	frame_shift_del	c.636	p.L213fs	0.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11L1	HGNC	ENSG00000197591				59	0	0	58	11	15.942
CNKSR1	0	genome.wustl.edu	37	1	26515997	26515997	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	26515997	26515997	C	-	DEL	CNKSR1	ENST00000374253	human	ensembl	74_37	+1	known	frame_shift_del	c.2121	p.L709fs	0.073	NULL	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675				232	0	0	150	40	21.0526
SH3BGRL3	0	genome.wustl.edu	37	1	26607448	26607448	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	26607448	26607448	G	-	DEL	SH3BGRL3	ENST00000319041	human	ensembl	74_37	+1	known	frame_shift_del	c.241	p.S83fs	0.002	NULL	pfam_Glut_rich_SH3-bd,pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGRL3	HGNC	ENSG00000142669				23	0	0	17	6	26.087
ARID1A	0	genome.wustl.edu	37	1	27057937	27057937	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	27057937	27057937	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.1645	p.Y551fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				342	0	0	292	18	5.80645
EPB41	0	genome.wustl.edu	37	1	29379717	29379717	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	29379717	29379717	A	-	DEL	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	frame_shift_del	c.1738	p.T582fs	0.796	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023				60	0	0	57	20	25.974
TSSK3	0	genome.wustl.edu	37	1	32829722	32829722	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	32829722	32829722	G	-	DEL	TSSK3	ENST00000373534	human	ensembl	74_37	+1	known	frame_shift_del	c.672	p.V226fs	0.997	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TSSK3	HGNC	ENSG00000162526				215	0	0	191	19	9.04762
ENSG00000271554	0	genome.wustl.edu	37	1	36475027	36475027	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	36475027	36475027	A	-	DEL	ENSG00000271554	ENST00000479395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RP4-665N4.8	Clone_based_vega_gene	ENSG00000271554				31	0	0	10	6	37.5
GRIK3	0	genome.wustl.edu	37	1	37285344	37285345	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	37285344	37285345	-	A	INS	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	frame_shift_ins	c.1866_1865	p.M622fs	1.000:1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873				45	0	0	33	8	19.5122
ZC3H12A	0	genome.wustl.edu	37	1	37947230	37947231	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	37947230	37947231	-	A	INS	ZC3H12A	ENST00000373087	human	ensembl	74_37	+1	known	frame_shift_ins	c.612_613	p.K205fs	1.000:1.000	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874				174	0	0	102	36	26.087
ZC3H12A	0	genome.wustl.edu	37	1	37948555	37948555	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	37948555	37948555	G	-	DEL	ZC3H12A	ENST00000373087	human	ensembl	74_37	+1	known	frame_shift_del	c.1143	p.A383fs	0.003	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874				22	0	0	14	6	30
FHL3	0	genome.wustl.edu	37	1	38462977	38462977	+	RNA	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	38462977	38462977	T	-	DEL	FHL3	ENST00000475084	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FHL3	HGNC	ENSG00000183386				17	0	0	10	3	23.0769
OXCT2	0	genome.wustl.edu	37	1	40236161	40236161	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	40236161	40236161	G	-	DEL	OXCT2	ENST00000327582	human	ensembl	74_37	-1	known	frame_shift_del	c.767	p.P256fs	0.982	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT2	HGNC	ENSG00000198754				85	0	0	90	6	6.25
COL9A2	0	genome.wustl.edu	37	1	40782845	40782845	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	40782845	40782845	G	-	DEL	COL9A2	ENST00000372748	human	ensembl	74_37	-1	known	frame_shift_del	c.25	p.R9fs	0.991	NULL	pfam_Collagen	-	no_errors	COL9A2	HGNC	ENSG00000049089				20	0	0	9	2	18.1818
TAL1	0	genome.wustl.edu	37	1	47691474	47691475	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	47691474	47691475	-	G	INS	TAL1	ENST00000371883	human	ensembl	74_37	-1	known	frame_shift_ins	c.87_86	p.H30fs	1.000:1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TAL1	HGNC	ENSG00000162367				53	0	0	37	10	21.2766
SLC5A9	0	genome.wustl.edu	37	1	48713206	48713206	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	48713206	48713206	T	-	DEL	SLC5A9	ENST00000236495	human	ensembl	74_37	+1	known	frame_shift_del	c.2112	p.F705fs	0.900	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834				108	0	0	120	9	6.97674
ZCCHC11	0	genome.wustl.edu	37	1	52991403	52991403	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	52991403	52991403	T	-	DEL	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	frame_shift_del	c.550	p.I184fs	0.196	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				141	0	0	135	45	25
C8B	0	genome.wustl.edu	37	1	57395224	57395224	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	57395224	57395224	G	-	DEL	C8B	ENST00000371237	human	ensembl	74_37	-1	known	frame_shift_del	c.1629	p.I544fs	0.054	superfamily_Thrombospondin_1_rpt	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8B	HGNC	ENSG00000021852				69	0	0	59	10	14.4928
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				54	0	0	58	13	18.3099
KANK4	0	genome.wustl.edu	37	1	62740528	62740528	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	62740528	62740528	G	-	DEL	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	frame_shift_del	c.248	p.P83fs	0.017	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854				178	0	0	137	24	14.9068
ELTD1	0	genome.wustl.edu	37	1	79357234	79357234	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	79357234	79357234	A	-	DEL	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	frame_shift_del	c.1985	p.L662fs	1.000	pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618				41	0	0	65	6	8.4507
TNFRSF9	0	genome.wustl.edu	37	1	7998254	7998254	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	7998254	7998254	T	-	DEL	TNFRSF9	ENST00000377507	human	ensembl	74_37	-1	known	frame_shift_del	c.345	p.G116fs	0.019	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9	-	no_errors	TNFRSF9	HGNC	ENSG00000049249				181	0	0	185	23	11.0577
RERE	0	genome.wustl.edu	37	1	8420670	8420670	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	8420670	8420670	G	-	DEL	RERE	ENST00000337907	human	ensembl	74_37	-1	known	frame_shift_del	c.2897	p.P966fs	1.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				145	0	0	162	34	17.3469
ENSG00000237568	0	genome.wustl.edu	37	1	89726358	89726358	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	89726358	89726358	A	-	DEL	ENSG00000237568	ENST00000437128	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-620F22.2	Clone_based_vega_gene	ENSG00000237568				61	0	0	54	19	26.0274
ZNF644	0	genome.wustl.edu	37	1	91406040	91406040	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	91406040	91406040	T	-	DEL	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	frame_shift_del	c.871	p.R291fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				51	0	0	44	8	15.3846
MTF2	0	genome.wustl.edu	37	1	93599280	93599280	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	1	93599280	93599280	A	-	DEL	MTF2	ENST00000370298	human	ensembl	74_37	+1	known	frame_shift_del	c.1181	p.G397fs	0.994	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033				35	0	0	43	6	12.2449
PSD	0	genome.wustl.edu	37	10	104176203	104176203	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	104176203	104176203	C	-	DEL	PSD	ENST00000020673	human	ensembl	74_37	-1	known	frame_shift_del	c.593	p.G198fs	0.774	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915				26	0	0	15	7	31.8182
PWWP2B	0	genome.wustl.edu	37	10	134218254	134218255	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	134218254	134218255	-	C	INS	PWWP2B	ENST00000305233	human	ensembl	74_37	+1	known	frame_shift_ins	c.250_251	p.P87fs	0.000:0.183	NULL	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	PWWP2B	HGNC	ENSG00000171813				54	0	0	55	14	20.2899
FRMD4A	0	genome.wustl.edu	37	10	13696452	13696452	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	13696452	13696452	G	-	DEL	FRMD4A	ENST00000357447	human	ensembl	74_37	-1	known	frame_shift_del	c.3014	p.P1005fs	1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474				119	0	0	105	11	9.48276
KIAA1217	0	genome.wustl.edu	37	10	24669902	24669902	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	24669902	24669902	G	-	DEL	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	frame_shift_del	c.459	p.D155fs	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				81	0	0	48	12	20
PTCHD3	0	genome.wustl.edu	37	10	27702950	27702951	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	27702950	27702951	-	G	INS	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	frame_shift_ins	c.230_229	p.R77fs	0.000:0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				118	0	0	77	15	16.3043
SVIL	0	genome.wustl.edu	37	10	29762771	29762772	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	29762771	29762772	-	C	INS	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	frame_shift_ins	c.5525_5524	p.A1842fs	1.000:0.998	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				95	0	0	62	20	24.3902
DIP2C	0	genome.wustl.edu	37	10	395273	395273	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	395273	395273	G	-	DEL	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	frame_shift_del	c.3107	p.P1036fs	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				59	0	0	50	8	13.7931
TAF3	0	genome.wustl.edu	37	10	8005881	8005883	+	Splice_Site	DEL	AGA	AGA	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	8005881	8005883	AGA	-	DEL	TAF3	ENST00000344293	human	ensembl	74_37	+1	known	splice_site_del	c.410-2_410-1	e3-1	1.000:1.000:1.000	-	-	-	no_errors	TAF3	HGNC	ENSG00000165632				16	0	0	16	2	11.1111
ZMIZ1	0	genome.wustl.edu	37	10	81067262	81067262	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	81067262	81067262	C	-	DEL	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	frame_shift_del	c.2769	p.P925fs	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				107	0	0	99	13	11.6071
LARP4B	0	genome.wustl.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	890939	890939	T	-	DEL	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.T163fs	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				129	0	0	89	28	23.9316
HTR7	0	genome.wustl.edu	37	10	92502258	92502258	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	92502258	92502258	T	-	DEL	HTR7	ENST00000336152	human	ensembl	74_37	-1	known	frame_shift_del	c.1421	p.K474fs	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT_7_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	HTR7	HGNC	ENSG00000148680				73	0	0	62	9	12.6761
BTAF1	0	genome.wustl.edu	37	10	93773716	93773718	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	93773716	93773718	AAG	-	DEL	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	in_frame_del	c.4514_4516	p.E1506in_frame_del	1.000:1.000:1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				163	0	0	144	9	5.88235
C10orf129	0	genome.wustl.edu	37	10	96967067	96967067	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	96967067	96967067	C	-	DEL	C10orf129	ENST00000341686	human	ensembl	74_37	+1	known	frame_shift_del	c.506	p.P170fs	0.003	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	C10orf129	HGNC	ENSG00000173124				125	0	0	112	20	15.1515
TM9SF3	0	genome.wustl.edu	37	10	98319424	98319425	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	10	98319424	98319425	-	A	INS	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	frame_shift_ins	c.652_651	p.Q217fs	1.000:1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				27	0	0	34	5	12.8205
C11orf57	0	genome.wustl.edu	37	11	111953288	111953289	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	111953288	111953289	-	A	INS	C11orf57	ENST00000393047	human	ensembl	74_37	+1	known	frame_shift_ins	c.474_475	p.Q161fs	1.000:1.000	NULL	NULL	-	no_errors	C11orf57	HGNC	ENSG00000150776				24	0	0	23	10	30.303
RNF214	0	genome.wustl.edu	37	11	117105026	117105026	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	117105026	117105026	C	-	DEL	RNF214	ENST00000300650	human	ensembl	74_37	+1	known	frame_shift_del	c.38	p.S15fs	0.003	NULL	pfscan_Znf_RING	-	no_errors	RNF214	HGNC	ENSG00000167257				177	0	0	147	27	15.5172
KMT2A	0	genome.wustl.edu	37	11	118375915	118375915	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	118375915	118375915	A	-	DEL	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	frame_shift_del	c.9299	p.I3102fs	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				237	0	0	242	26	9.70149
DDX6	0	genome.wustl.edu	37	11	118629613	118629614	+	Splice_Site	INS	-	-	GG			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	118629613	118629614	-	GG	INS	DDX6	ENST00000264018	human	ensembl	74_37	-1	known	splice_site_ins	c.865-3_865-2	e8-2	1.000:0.856	-	-	-	no_errors	DDX6	HGNC	ENSG00000110367				231	1	0.431034	184	51	21.7021
C1QTNF5	0	genome.wustl.edu	37	11	119210190	119210190	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	119210190	119210190	C	-	DEL	C1QTNF5	ENST00000445041	human	ensembl	74_37	-1	known	frame_shift_del	c.583	p.A195fs	0.976	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF5	HGNC	ENSG00000223953				138	0	0	92	10	9.80392
IGSF9B	0	genome.wustl.edu	37	11	133807827	133807827	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	133807827	133807827	G	-	DEL	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	frame_shift_del	c.439	p.Q147fs	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854				40	0	0	27	3	10
BRSK2	0	genome.wustl.edu	37	11	1478186	1478187	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	1478186	1478187	-	C	INS	BRSK2	ENST00000308230	human	ensembl	74_37	+1	known	frame_shift_ins	c.2007_2008	p.P672fs	0.999:0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672				27	0	0	14	12	46.1538
BRSK2	0	genome.wustl.edu	37	11	1478187	1478187	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	1478187	1478187	C	-	DEL	BRSK2	ENST00000308230	human	ensembl	74_37	+1	known	frame_shift_del	c.2008	p.P672fs	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672				27	0	0	24	2	7.69231
PAX6	0	genome.wustl.edu	37	11	31812316	31812317	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	31812316	31812317	-	G	INS	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	frame_shift_ins	c.1167_1166	p.H390fs	0.017:1.000	NULL	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372				81	0	0	65	15	18.75
CCDC73	0	genome.wustl.edu	37	11	32635951	32635951	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	32635951	32635951	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.1913	p.N638fs	0.024	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				32	0	0	27	4	12.9032
HIPK3	0	genome.wustl.edu	37	11	33308323	33308323	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	33308323	33308323	C	-	DEL	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	frame_shift_del	c.363	p.Q123fs	0.945	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				78	0	0	79	12	13.1868
APIP	0	genome.wustl.edu	37	11	34910341	34910341	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	34910341	34910341	T	-	DEL	APIP	ENST00000278359	human	ensembl	74_37	-1	known	frame_shift_del	c.334	p.S112fs	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N,tigrfam_MethylthioRu-1-P_deHdtase_MtnB	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N,tigrfam_MethylthioRu-1-P_deHdtase_MtnB	-	no_errors	APIP	HGNC	ENSG00000149089				44	0	0	57	22	27.8481
ANO9	0	genome.wustl.edu	37	11	418445	418445	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	418445	418445	C	-	DEL	ANO9	ENST00000332826	human	ensembl	74_37	-1	known	frame_shift_del	c.2275	p.A759fs	0.747	NULL	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101				62	0	0	56	14	20
AMBRA1	0	genome.wustl.edu	37	11	46568609	46568609	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	46568609	46568609	A	-	DEL	AMBRA1	ENST00000524783	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.881	-	-	-	no_errors	AMBRA1	HGNC	ENSG00000110497				22	0	0	22	9	29.0323
ARFGAP2	0	genome.wustl.edu	37	11	47196853	47196853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	47196853	47196853	A	-	DEL	ARFGAP2	ENST00000524782	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.R93fs	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182				147	0	0	112	12	9.67742
OR4A16	0	genome.wustl.edu	37	11	55111419	55111419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	55111419	55111419	T	-	DEL	OR4A16	ENST00000314721	human	ensembl	74_37	+1	known	frame_shift_del	c.743	p.F249fs	0.532	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A16	HGNC	ENSG00000181961				46	0	0	51	7	12.069
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				39	0	0	40	7	14.8936
FAM111B	0	genome.wustl.edu	37	11	58892377	58892377	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	58892377	58892377	A	-	DEL	FAM111B	ENST00000343597	human	ensembl	74_37	+1	known	frame_shift_del	c.807	p.K272fs	0.000	NULL	superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111B	HGNC	ENSG00000189057				22	0	0	11	4	26.6667
MS4A12	0	genome.wustl.edu	37	11	60269470	60269471	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	60269470	60269471	CT	-	DEL	MS4A12	ENST00000016913	human	ensembl	74_37	+1	known	frame_shift_del	c.429_430	p.S146fs	0.004:0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A12	HGNC	ENSG00000071203				268	0	0	272	21	7.16724
SLC3A2	0	genome.wustl.edu	37	11	62649529	62649529	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	62649529	62649529	A	-	DEL	SLC3A2	ENST00000377892	human	ensembl	74_37	+1	known	frame_shift_del	c.985	p.K331fs	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003				73	0	0	82	18	18
PYGM	0	genome.wustl.edu	37	11	64519098	64519099	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	64519098	64519099	-	A	INS	PYGM	ENST00000164139	human	ensembl	74_37	-1	known	frame_shift_ins	c.1798_1797	p.V599fs	0.991:0.464	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976				76	0	0	111	8	6.72269
CDC42BPG	0	genome.wustl.edu	37	11	64595242	64595242	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	64595242	64595242	G	-	DEL	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	frame_shift_del	c.3981	p.Y1328fs	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219				106	0	0	93	7	7
MAP3K11	0	genome.wustl.edu	37	11	65367034	65367034	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	65367034	65367034	G	-	DEL	MAP3K11	ENST00000309100	human	ensembl	74_37	-1	known	frame_shift_del	c.2037	p.T680fs	0.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327				94	0	0	77	5	6.09756
ADRBK1	0	genome.wustl.edu	37	11	67048952	67048952	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	67048952	67048952	A	-	DEL	ADRBK1	ENST00000308595	human	ensembl	74_37	+1	known	frame_shift_del	c.670	p.K225fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020				112	0	0	91	13	12.5
NADSYN1	0	genome.wustl.edu	37	11	71192428	71192429	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	71192428	71192429	-	T	INS	NADSYN1	ENST00000319023	human	ensembl	74_37	+1	known	frame_shift_ins	c.1025_1026	p.L344fs	0.996:0.280	pfam_NAD/GMP_synthase,pirsf_Gln-dep_NAD_synthase,tigrfam_NAD_synthase	pfam_C-N_Hydrolase,pfam_NAD/GMP_synthase,superfamily_C-N_Hydrolase,pirsf_Gln-dep_NAD_synthase,pfscan_C-N_Hydrolase,tigrfam_NAD_synthase	-	no_errors	NADSYN1	HGNC	ENSG00000172890				139	0	0	122	19	13.4752
RPLP2	0	genome.wustl.edu	37	11	812778	812780	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	812778	812780	AGA	-	DEL	RPLP2	ENST00000321153	human	ensembl	74_37	+1	known	in_frame_del	c.290_292	p.K99in_frame_del	1.000:1.000:1.000	pfam_Ribosomal_L10/L12	pfam_Ribosomal_L10/L12	-	no_errors	RPLP2	HGNC	ENSG00000177600				86	0	0	49	15	23.4375
PCF11	0	genome.wustl.edu	37	11	82877151	82877151	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	82877151	82877151	A	-	DEL	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	frame_shift_del	c.1212	p.K406fs	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				14	0	0	20	4	16.6667
CTSC	0	genome.wustl.edu	37	11	88068108	88068108	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	11	88068108	88068108	A	-	DEL	CTSC	ENST00000227266	human	ensembl	74_37	-1	known	frame_shift_del	c.315	p.F105fs	1.000	pfam_CathepsinC_exc	pfam_Peptidase_C1A_C,pfam_CathepsinC_exc,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSC	HGNC	ENSG00000109861				63	0	0	62	17	21.519
FAM71C	0	genome.wustl.edu	37	12	100042353	100042354	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	100042353	100042354	-	A	INS	FAM71C	ENST00000324341	human	ensembl	74_37	+1	known	frame_shift_ins	c.401_402	p.Q137fs	0.001:0.032	pfam_DUF3699	pfam_DUF3699	-	no_errors	FAM71C	HGNC	ENSG00000180219				98	0	0	65	19	22.619
ANKS1B	0	genome.wustl.edu	37	12	100166681	100166682	+	RNA	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	100166681	100166682	-	C	INS	ANKS1B	ENST00000552472	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	ANKS1B	HGNC	ENSG00000185046				61	0	0	50	11	18.0328
MVK	0	genome.wustl.edu	37	12	110019240	110019240	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	110019240	110019240	C	-	DEL	MVK	ENST00000228510	human	ensembl	74_37	+1	known	frame_shift_del	c.412	p.A141fs	1.000	pfam_GHMP_kinase_N_dom,superfamily_Ribosomal_S5_D2-typ_fold,prints_Mevalonate/galactokinase,prints_Galkinase,tigrfam_Mev_gal_kin	pfam_GHMP_kinase_N_dom,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,prints_Mevalonate/galactokinase,prints_Galkinase,tigrfam_Mev_gal_kin	-	no_errors	MVK	HGNC	ENSG00000110921				111	0	0	88	12	12
TRPV4	0	genome.wustl.edu	37	12	110238436	110238437	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	110238436	110238437	-	C	INS	TRPV4	ENST00000261740	human	ensembl	74_37	-1	known	frame_shift_ins	c.840_839	p.Y281fs	1.000:1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,prints_TRPV4_channel,tigrfam_TRP_channel	-	no_errors	TRPV4	HGNC	ENSG00000111199				73	0	0	59	13	18.0556
CCDC92	0	genome.wustl.edu	37	12	124421799	124421800	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	124421799	124421800	-	G	INS	CCDC92	ENST00000238156	human	ensembl	74_37	-1	known	frame_shift_ins	c.802_801	p.I267fs	1.000:1.000	NULL	NULL	-	no_errors	CCDC92	HGNC	ENSG00000119242				86	0	0	80	9	10.1124
NCOR2	0	genome.wustl.edu	37	12	124841251	124841251	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	124841251	124841251	G	-	DEL	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	frame_shift_del	c.3199	p.R1067fs	0.395	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				22	0	0	25	4	13.7931
PLEKHA5	0	genome.wustl.edu	37	12	19514518	19514518	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	19514518	19514518	A	-	DEL	PLEKHA5	ENST00000317589	human	ensembl	74_37	+1	known	frame_shift_del	c.3177	p.T1062fs	0.273	NULL	pfam_Pleckstrin_homology,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				12	0	0	17	3	15
KLHL42	0	genome.wustl.edu	37	12	27950769	27950769	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	27950769	27950769	G	-	DEL	KLHL42	ENST00000381271	human	ensembl	74_37	+1	known	frame_shift_del	c.1188	p.C399fs	0.988	NULL	pfam_Kelch_1,pfam_BACK,superfamily_BTB/POZ_fold,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL42	HGNC	ENSG00000087448				118	0	0	107	26	19.5489
LRRK2	0	genome.wustl.edu	37	12	40713870	40713870	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	40713870	40713870	A	-	DEL	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	frame_shift_del	c.4908	p.R1639fs	0.408	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				71	0	0	85	10	10.5263
SENP1	0	genome.wustl.edu	37	12	48458896	48458896	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	48458896	48458896	T	-	DEL	SENP1	ENST00000004980	human	ensembl	74_37	-1	known	frame_shift_del	c.1227	p.G410fs	0.206	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387				32	0	0	40	19	32.2034
NCKAP5L	0	genome.wustl.edu	37	12	50189470	50189471	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	50189470	50189471	-	C	INS	NCKAP5L	ENST00000335999	human	ensembl	74_37	-1	known	frame_shift_ins	c.2173_2172	p.I724fs	0.000:0.000	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566				31	0	0	23	3	11.5385
AMHR2	0	genome.wustl.edu	37	12	53819644	53819645	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	53819644	53819645	-	G	INS	AMHR2	ENST00000257863	human	ensembl	74_37	+1	known	frame_shift_ins	c.793_794	p.P268fs	0.937:0.935	pirsf_Anti-muellerian_hrmn_rcpt_II,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Anti-muellerian_hrmn_rcpt_II,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AMHR2	HGNC	ENSG00000135409				95	0	0	77	11	12.5
OR6C75	0	genome.wustl.edu	37	12	55759192	55759192	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	55759192	55759192	T	-	DEL	OR6C75	ENST00000343399	human	ensembl	74_37	+1	known	frame_shift_del	c.298	p.F102fs	0.964	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C75	HGNC	ENSG00000187857				129	0	0	107	31	22.4638
STAT6	0	genome.wustl.edu	37	12	57499093	57499094	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	57499093	57499094	-	G	INS	STAT6	ENST00000300134	human	ensembl	74_37	-1	known	frame_shift_ins	c.842_841	p.Q281fs	1.000:1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888				66	0	0	66	6	8.33333
XPOT	0	genome.wustl.edu	37	12	64812755	64812755	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	64812755	64812755	T	-	DEL	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	frame_shift_del	c.370	p.F126fs	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				82	0	0	85	8	8.60215
MDM1	0	genome.wustl.edu	37	12	68724964	68724964	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	68724964	68724964	T	-	DEL	MDM1	ENST00000303145	human	ensembl	74_37	-1	known	frame_shift_del	c.56	p.K19fs	0.997	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554				189	0	0	218	19	8.01688
BBS10	0	genome.wustl.edu	37	12	76741529	76741530	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	76741529	76741530	-	T	INS	BBS10	ENST00000393262	human	ensembl	74_37	-1	known	frame_shift_ins	c.236_235	p.T79fs	0.993:0.846	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	BBS10	HGNC	ENSG00000179941				46	0	0	44	8	15.3846
CLEC4A	0	genome.wustl.edu	37	12	8281937	8281937	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	8281937	8281937	A	-	DEL	CLEC4A	ENST00000229332	human	ensembl	74_37	+1	known	frame_shift_del	c.277	p.N95fs	0.289	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4A	HGNC	ENSG00000111729				57	0	0	69	15	17.8571
LRRIQ1	0	genome.wustl.edu	37	12	85450035	85450035	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	85450035	85450035	A	-	DEL	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	frame_shift_del	c.1464	p.K490fs	0.001	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				27	0	0	27	7	20.5882
LRRIQ1	0	genome.wustl.edu	37	12	85638646	85638646	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	85638646	85638646	A	-	DEL	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	frame_shift_del	c.5096	p.N1702fs	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				40	0	0	32	24	42.8571
CCDC38	0	genome.wustl.edu	37	12	96260859	96260860	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	96260859	96260860	-	A	INS	CCDC38	ENST00000344280	human	ensembl	74_37	-1	known	frame_shift_ins	c.1687_1686	p.T562fs	0.990:0.993	NULL	NULL	-	no_errors	CCDC38	HGNC	ENSG00000165972				37	0	0	32	13	28.8889
TMPO	0	genome.wustl.edu	37	12	98921672	98921672	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	12	98921672	98921672	A	-	DEL	TMPO	ENST00000266732	human	ensembl	74_37	+1	known	frame_shift_del	c.288	p.T99fs	1.000	NULL	pfam_LAP2alpha,pfam_LEM-like_dom,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom,pfscan_LEM-like_dom	-	no_errors	TMPO	HGNC	ENSG00000120802				102	0	0	93	14	13.0841
IFT88	0	genome.wustl.edu	37	13	21205180	21205180	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	21205180	21205180	A	-	DEL	IFT88	ENST00000319980	human	ensembl	74_37	+1	known	frame_shift_del	c.1352	p.K453fs	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFT88	HGNC	ENSG00000032742				110	0	0	95	7	6.86275
SPG20	0	genome.wustl.edu	37	13	36886628	36886628	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	36886628	36886628	A	-	DEL	SPG20	ENST00000491805	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	SPG20	HGNC	ENSG00000133104				47	0	0	40	13	24.5283
ALG11	0	genome.wustl.edu	37	13	52593203	52593203	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	52593203	52593203	T	-	DEL	ALG11	ENST00000521508	human	ensembl	74_37	+1	known	frame_shift_del	c.199	p.H69fs	1.000	NULL	pfam_Glyco_trans_1	-	no_errors	ALG11	HGNC	ENSG00000253710				129	0	0	99	9	8.33333
LECT1	0	genome.wustl.edu	37	13	53313766	53313766	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	53313766	53313766	G	-	DEL	LECT1	ENST00000377962	human	ensembl	74_37	-1	known	frame_shift_del	c.71	p.P24fs	1.000	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	LECT1	HGNC	ENSG00000136110				77	0	0	88	13	12.8713
MYCBP2	0	genome.wustl.edu	37	13	77671669	77671669	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	13	77671669	77671669	T	-	DEL	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	frame_shift_del	c.9620	p.K3207fs	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				10	0	0	6	3	33.3333
SUPT16H	0	genome.wustl.edu	37	14	21833041	21833041	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	21833041	21833041	T	-	DEL	SUPT16H	ENST00000216297	human	ensembl	74_37	-1	known	frame_shift_del	c.1178	p.K393fs	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201				112	0	0	88	11	11.1111
RNF31	0	genome.wustl.edu	37	14	24620009	24620009	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	24620009	24620009	C	-	DEL	RNF31	ENST00000324103	human	ensembl	74_37	+1	known	frame_shift_del	c.1400	p.L469fs	0.695	NULL	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like_dom,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098				69	0	0	74	6	7.5
NYNRIN	0	genome.wustl.edu	37	14	24878306	24878306	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	24878306	24878306	G	-	DEL	NYNRIN	ENST00000382554	human	ensembl	74_37	+1	known	frame_shift_del	c.1306	p.L438fs	0.016	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978				16	0	0	15	5	25
MDGA2	0	genome.wustl.edu	37	14	47530771	47530771	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	47530771	47530771	T	-	DEL	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	frame_shift_del	c.1206	p.G403fs	1.000	NULL	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				18	0	0	15	10	40
SOS2	0	genome.wustl.edu	37	14	50606660	50606661	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	50606660	50606661	-	A	INS	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	frame_shift_ins	c.2785_2784	p.G928fs	1.000:1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				42	0	0	45	18	28.5714
SAMD4A	0	genome.wustl.edu	37	14	55226890	55226890	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	55226890	55226890	G	-	DEL	SAMD4A	ENST00000392067	human	ensembl	74_37	+1	known	frame_shift_del	c.1188	p.G398fs	0.995	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4A	HGNC	ENSG00000020577				417	1	0.239234	281	50	15.1057
EXD2	0	genome.wustl.edu	37	14	69701505	69701505	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	69701505	69701505	A	-	DEL	EXD2	ENST00000312994	human	ensembl	74_37	+1	known	frame_shift_del	c.806	p.N271fs	0.000	NULL	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD2	HGNC	ENSG00000081177				21	0	0	25	7	21.875
SIPA1L1	0	genome.wustl.edu	37	14	72054755	72054755	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	72054755	72054755	C	-	DEL	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	frame_shift_del	c.166	p.R58fs	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				114	0	0	113	8	6.61157
PTPN21	0	genome.wustl.edu	37	14	88940113	88940113	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	88940113	88940113	T	-	DEL	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	frame_shift_del	c.2545	p.I849fs	0.995	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778				79	0	0	93	25	21.1864
LGMN	0	genome.wustl.edu	37	14	93170987	93170987	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	93170987	93170987	G	-	DEL	LGMN	ENST00000334869	human	ensembl	74_37	-1	known	frame_shift_del	c.1257	p.H419fs	1.000	NULL	pfam_Peptidase_C13,prints_Peptidase_C13	-	no_errors	LGMN	HGNC	ENSG00000100600				338	0	0	251	32	11.3074
BTBD7	0	genome.wustl.edu	37	14	93730184	93730184	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	93730184	93730184	A	-	DEL	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	frame_shift_del	c.1318	p.Y440fs	1.000	pfam_BACK,smart_BACK	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114				128	0	0	99	12	10.8108
ATG2B	0	genome.wustl.edu	37	14	96788614	96788614	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	96788614	96788614	A	-	DEL	ATG2B	ENST00000488421	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG2B	HGNC	ENSG00000066739				41	0	0	64	11	14.6667
ATG2B	0	genome.wustl.edu	37	14	96790337	96790338	+	Splice_Site	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	14	96790337	96790338	-	A	INS	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	splice_site_ins	c.2438-3_2438-2	e16-2	0.997:0.458	-	-	-	no_errors	ATG2B	HGNC	ENSG00000066739				27	0	0	24	3	11.1111
SNHG14	0	genome.wustl.edu	37	15	25304706	25304706	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	25304706	25304706	A	-	DEL	SNHG14	ENST00000384733	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				239	0	0	186	39	17.3333
SNORD116-6	0	genome.wustl.edu	37	15	25310193	25310193	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	25310193	25310193	A	-	DEL	SNORD116-6	ENST00000384711	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORD116-6	HGNC	ENSG00000207442				189	0	0	149	21	12.3529
SNORD115-15	0	genome.wustl.edu	37	15	25442770	25442770	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	25442770	25442770	A	-	DEL	SNORD115-15	ENST00000364809	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.878	-	-	-	no_errors	SNORD115-15	HGNC	ENSG00000201679				602	0	0	505	28	5.25328
SPRED1	0	genome.wustl.edu	37	15	38616968	38616968	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	38616968	38616968	C	-	DEL	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	frame_shift_del	c.381	p.E129fs	0.998	NULL	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				16	0	0	24	6	20
VPS39	0	genome.wustl.edu	37	15	42492117	42492119	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	42492117	42492119	AGA	-	DEL	VPS39	ENST00000348544	human	ensembl	74_37	-1	known	in_frame_del	c.116_114	p.L39in_frame_del	1.000:1.000:0.998	pfam_Citron,superfamily_WD40_repeat_dom,smart_Citron	pfam_Citron,pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,smart_Citron	-	no_errors	VPS39	HGNC	ENSG00000166887				81	0	0	66	5	7.04225
STRC	0	genome.wustl.edu	37	15	43893733	43893734	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	43893733	43893734	-	G	INS	STRC	ENST00000450892	human	ensembl	74_37	-1	known	frame_shift_ins	c.4562_4561	p.R1521fs	0.022:0.015	NULL	NULL	-	no_errors	STRC	HGNC	ENSG00000242866				64	0	0	84	23	21.4953
SLC30A4	0	genome.wustl.edu	37	15	45814242	45814243	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	45814242	45814243	-	TC	INS	SLC30A4	ENST00000261867	human	ensembl	74_37	-1	known	frame_shift_ins	c.311_310	p.I104fs	0.001:0.001	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A4	HGNC	ENSG00000104154				161	0	0	81	52	39.0977
GLDN	0	genome.wustl.edu	37	15	51692688	51692688	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	51692688	51692688	T	-	DEL	GLDN	ENST00000335449	human	ensembl	74_37	+1	known	frame_shift_del	c.1020	p.S342fs	0.913	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Collagen,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	GLDN	HGNC	ENSG00000186417				368	0	0	201	142	41.3994
PIGB	0	genome.wustl.edu	37	15	55621922	55621922	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	55621922	55621922	T	-	DEL	PIGB	ENST00000164305	human	ensembl	74_37	+1	known	frame_shift_del	c.523	p.C177fs	1.000	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	PIGB	HGNC	ENSG00000069943				117	0	0	123	14	10.219
NARG2	0	genome.wustl.edu	37	15	60745782	60745782	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	60745782	60745782	A	-	DEL	NARG2	ENST00000561114	human	ensembl	74_37	-1	putative	frame_shift_del	c.1145	p.F382fs	0.000	NULL	NULL	-	no_errors	NARG2	HGNC	ENSG00000128915				44	0	0	26	22	45.8333
IGDCC4	0	genome.wustl.edu	37	15	65678319	65678319	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	65678319	65678319	G	-	DEL	IGDCC4	ENST00000352385	human	ensembl	74_37	-1	novel	frame_shift_del	c.3030	p.S1011fs	0.001	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC4	HGNC	ENSG00000103742				23	0	0	13	4	23.5294
DENND4A	0	genome.wustl.edu	37	15	66030118	66030119	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	66030118	66030119	-	A	INS	DENND4A	ENST00000443035	human	ensembl	74_37	-1	known	frame_shift_ins	c.967_966	p.D322fs	1.000:1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485				13	0	0	11	6	35.2941
LOC729911	0	genome.wustl.edu	37	15	79529061	79529063	+	RNA	DEL	CCT	CCT	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	15	79529061	79529063	CCT	-	DEL	LOC729911	ENST00000559979	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994:0.996:0.982	-	-	-	no_errors	RP11-17L5.4	Clone_based_vega_gene	ENSG00000259234				26	0	0	11	18	62.069
CIITA	0	genome.wustl.edu	37	16	11001304	11001305	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	11001304	11001305	-	C	INS	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	frame_shift_ins	c.1955_1956	p.G655fs	0.096:0.128	pfscan_NACHT_NTPase,prints_MHC_II_transact	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				36	0	0	34	10	22.7273
KIAA0430	0	genome.wustl.edu	37	16	15724194	15724194	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	15724194	15724194	T	-	DEL	KIAA0430	ENST00000396368	human	ensembl	74_37	-1	known	frame_shift_del	c.1519	p.M507fs	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783				108	0	0	85	13	13.2653
KNOP1	0	genome.wustl.edu	37	16	19725706	19725706	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	19725706	19725706	T	-	DEL	KNOP1	ENST00000219837	human	ensembl	74_37	-1	known	frame_shift_del	c.652	p.I218fs	0.397	NULL	NULL	-	no_errors	KNOP1	HGNC	ENSG00000103550				67	0	0	75	7	8.53659
ARHGAP17	0	genome.wustl.edu	37	16	24950745	24950745	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	24950745	24950745	C	-	DEL	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	frame_shift_del	c.1664	p.G555fs	1.000	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				25	0	0	15	11	42.3077
CCNF	0	genome.wustl.edu	37	16	2503467	2503467	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	2503467	2503467	C	-	DEL	CCNF	ENST00000397066	human	ensembl	74_37	+1	known	frame_shift_del	c.1644	p.P550fs	0.668	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,pfam_F-box_dom,superfamily_Cyclin-like,superfamily_F-box_dom,smart_F-box_dom,smart_Cyclin-like,pfscan_F-box_dom	-	no_errors	CCNF	HGNC	ENSG00000162063				68	0	0	66	13	16.4557
GTF3C1	0	genome.wustl.edu	37	16	27475971	27475972	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	27475971	27475972	-	G	INS	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	frame_shift_ins	c.5542_5541	p.E1847fs	0.012:0.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				48	0	0	52	5	8.77193
MAPK3	0	genome.wustl.edu	37	16	30134461	30134461	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	30134461	30134461	C	-	DEL	MAPK3	ENST00000263025	human	ensembl	74_37	-1	known	frame_shift_del	c.70	p.V24fs	0.218	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK1/2,prints_MAPK_ERK3/4	-	no_errors	MAPK3	HGNC	ENSG00000102882				29	0	0	26	5	16.129
SRCAP	0	genome.wustl.edu	37	16	30736371	30736371	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	30736371	30736371	C	-	DEL	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	frame_shift_del	c.5626	p.P1878fs	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				200	2	0.990099	139	42	23.2044
ABCC11	0	genome.wustl.edu	37	16	48261862	48261862	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	48261862	48261862	G	-	DEL	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	frame_shift_del	c.250	p.Q84fs	0.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				92	0	0	79	16	16.8421
GLYR1	0	genome.wustl.edu	37	16	4862228	4862229	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	4862228	4862229	-	C	INS	GLYR1	ENST00000321919	human	ensembl	74_37	-1	known	frame_shift_ins	c.1141_1140	p.R380fs	0.990:0.170	pfam_6PGDH_NADP-bd	pfam_6PGDH_NADP-bd,pfam_PWWP_dom,superfamily_6-PGluconate_DH_C-like,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	GLYR1	HGNC	ENSG00000140632				46	0	0	39	8	17.0213
BRD7	0	genome.wustl.edu	37	16	50367554	50367555	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	50367554	50367555	CT	-	DEL	BRD7	ENST00000394689	human	ensembl	74_37	-1	known	frame_shift_del	c.942_941	p.E314fs	0.995:1.000	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164				291	0	0	282	15	5.05051
NOD2	0	genome.wustl.edu	37	16	50745399	50745399	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	50745399	50745399	C	-	DEL	NOD2	ENST00000300589	human	ensembl	74_37	+1	known	frame_shift_del	c.1577	p.P528fs	0.928	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207				117	0	0	82	16	16.3265
CSNK2A2	0	genome.wustl.edu	37	16	58202515	58202515	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	58202515	58202515	T	-	DEL	CSNK2A2	ENST00000262506	human	ensembl	74_37	-1	known	frame_shift_del	c.512	p.K171fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A2	HGNC	ENSG00000070770				59	0	0	53	11	17.1875
ATP6V0D1	0	genome.wustl.edu	37	16	67477072	67477072	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	67477072	67477072	A	-	DEL	ATP6V0D1	ENST00000290949	human	ensembl	74_37	-1	known	frame_shift_del	c.491	p.F164fs	1.000	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	-	no_errors	ATP6V0D1	HGNC	ENSG00000159720				140	0	0	99	9	8.33333
FUK	0	genome.wustl.edu	37	16	70513191	70513191	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	70513191	70513191	C	-	DEL	FUK	ENST00000378912	human	ensembl	74_37	+1	known	frame_shift_del	c.3056	p.H1021fs	0.915	pfam_GHMP_kinase_C_dom,prints_Galkinase	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353				88	0	0	56	18	24.3243
MSLN	0	genome.wustl.edu	37	16	815527	815527	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	815527	815527	C	-	DEL	MSLN	ENST00000382862	human	ensembl	74_37	+1	known	frame_shift_del	c.705	p.P237fs	0.208	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLN	HGNC	ENSG00000102854				45	0	0	21	8	27.5862
TAF1C	0	genome.wustl.edu	37	16	84213651	84213651	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	84213651	84213651	G	-	DEL	TAF1C	ENST00000378541	human	ensembl	74_37	-1	known	frame_shift_del	c.1600	p.Q534fs	0.998	NULL	superfamily_WD40_repeat_dom	-	no_errors	TAF1C	HGNC	ENSG00000103168				58	0	0	46	8	14.8148
ZC3H18	0	genome.wustl.edu	37	16	88691140	88691141	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	88691140	88691141	-	C	INS	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	frame_shift_ins	c.2029_2030	p.R680fs	0.978:0.568	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				28	0	0	27	4	12.9032
ANKRD11	0	genome.wustl.edu	37	16	89350538	89350538	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	16	89350538	89350538	T	-	DEL	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	frame_shift_del	c.2412	p.E805fs	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				20	0	0	15	5	25
SHMT1	0	genome.wustl.edu	37	17	18259316	18259317	+	Splice_Site	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	18259316	18259317	-	A	INS	SHMT1	ENST00000316694	human	ensembl	74_37	-1	known	splice_site_ins	c.1-3_4	e1-2	0.992:0.695	-	-	-	no_errors	SHMT1	HGNC	ENSG00000176974				34	0	0	20	7	25.9259
SPECC1	0	genome.wustl.edu	37	17	20108263	20108263	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	20108263	20108263	A	-	DEL	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	frame_shift_del	c.901	p.N303fs	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				95	0	0	90	32	26.2295
UBBP4	0	genome.wustl.edu	37	17	21731262	21731262	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	21731262	21731262	C	-	DEL	UBBP4	ENST00000584755	human	ensembl	74_37	+1	novel	frame_shift_del	c.564	p.P190fs	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				92	0	0	51	15	22.7273
TMEM97	0	genome.wustl.edu	37	17	26653807	26653807	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	26653807	26653807	A	-	DEL	TMEM97	ENST00000226230	human	ensembl	74_37	+1	known	frame_shift_del	c.519	p.K176fs	1.000	pirsf_Transmembrane_6/97	pfam_Transmembrane_6/97,pirsf_Transmembrane_6/97	-	no_errors	TMEM97	HGNC	ENSG00000109084				56	0	0	37	14	27.451
KRTAP1-1	0	genome.wustl.edu	37	17	39197254	39197254	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	39197254	39197254	G	-	DEL	KRTAP1-1	ENST00000306271	human	ensembl	74_37	-1	known	frame_shift_del	c.396	p.C133fs	0.996	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP1-1	HGNC	ENSG00000188581				61	0	0	34	8	19.0476
ZZEF1	0	genome.wustl.edu	37	17	3962504	3962504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	3962504	3962504	A	-	DEL	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	frame_shift_del	c.4964	p.L1655fs	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				72	0	0	54	12	18.1818
KRT16	0	genome.wustl.edu	37	17	39768744	39768744	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	39768744	39768744	C	-	DEL	KRT16	ENST00000301653	human	ensembl	74_37	-1	known	frame_shift_del	c.197	p.G66fs	0.995	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT16	HGNC	ENSG00000186832				9	0	0	7	3	30
PLEKHH3	0	genome.wustl.edu	37	17	40821461	40821463	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	40821461	40821463	AGG	-	DEL	PLEKHH3	ENST00000591022	human	ensembl	74_37	-1	known	in_frame_del	c.2192_2190	p.L731in_frame_del	1.000:1.000:1.000	pfscan_FERM_domain	pfam_MyTH4_dom,pfam_FERM_central,pfam_Ras-assoc,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH3	HGNC	ENSG00000068137				31	0	0	28	4	12.5
SLC4A1	0	genome.wustl.edu	37	17	42337271	42337271	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	42337271	42337271	C	-	DEL	SLC4A1	ENST00000262418	human	ensembl	74_37	-1	known	frame_shift_del	c.515	p.G172fs	0.931	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939				111	0	0	92	29	23.9669
TAC4	0	genome.wustl.edu	37	17	47918915	47918915	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	47918915	47918915	T	-	DEL	TAC4	ENST00000334568	human	ensembl	74_37	-1	known	frame_shift_del	c.249	p.A84fs	0.021	NULL	NULL	-	no_errors	TAC4	HGNC	ENSG00000176358				75	0	0	67	4	5.6338
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				86	0	0	65	18	21.6867
SPAG9	0	genome.wustl.edu	37	17	49077041	49077041	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	49077041	49077041	T	-	DEL	SPAG9	ENST00000262013	human	ensembl	74_37	-1	known	frame_shift_del	c.1645	p.R549fs	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294				47	0	0	48	18	27.2727
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				189	0	0	179	23	11.3861
PRR11	0	genome.wustl.edu	37	17	57247171	57247171	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	57247171	57247171	A	-	DEL	PRR11	ENST00000262293	human	ensembl	74_37	+1	known	frame_shift_del	c.58	p.E23fs	0.749	NULL	NULL	-	no_errors	PRR11	HGNC	ENSG00000068489				51	0	0	44	20	31.25
PITPNM3	0	genome.wustl.edu	37	17	6387013	6387014	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	6387013	6387014	-	C	INS	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	frame_shift_ins	c.411_410	p.N138fs	0.014:1.000	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				140	0	0	141	12	7.84314
LLGL2	0	genome.wustl.edu	37	17	73555338	73555338	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	73555338	73555338	C	-	DEL	LLGL2	ENST00000392550	human	ensembl	74_37	+1	known	frame_shift_del	c.377	p.S128fs	0.956	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350				37	0	0	29	6	17.1429
RNF213	0	genome.wustl.edu	37	17	78324139	78324139	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	78324139	78324139	T	-	DEL	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	frame_shift_del	c.10127	p.Q3378fs	0.829	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				53	0	0	47	5	9.61538
TSPAN10	0	genome.wustl.edu	37	17	79612316	79612317	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	17	79612316	79612317	-	G	INS	TSPAN10	ENST00000328585	human	ensembl	74_37	+1	known	frame_shift_ins	c.335_336	p.P115fs	0.000:0.002	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN10	HGNC	ENSG00000182612				36	0	0	28	6	17.6471
SMCHD1	0	genome.wustl.edu	37	18	2706440	2706440	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	2706440	2706440	A	-	DEL	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	frame_shift_del	c.2035	p.K680fs	0.880	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596				15	0	0	9	5	35.7143
WBP11P1	0	genome.wustl.edu	37	18	30092428	30092428	+	RNA	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	30092428	30092428	C	-	DEL	WBP11P1	ENST00000567636	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389				137	0	0	127	10	7.29927
ASXL3	0	genome.wustl.edu	37	18	31325915	31325915	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	31325915	31325915	C	-	DEL	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	frame_shift_del	c.6103	p.P2037fs	0.124	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				9	0	0	9	3	25
ASXL3	0	genome.wustl.edu	37	18	31326067	31326067	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	31326067	31326067	T	-	DEL	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	frame_shift_del	c.6255	p.F2086fs	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				106	0	0	98	9	8.41121
HAUS1	0	genome.wustl.edu	37	18	43685174	43685174	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	43685174	43685174	A	-	DEL	HAUS1	ENST00000282058	human	ensembl	74_37	+1	known	frame_shift_del	c.45	p.I18fs	1.000	NULL	NULL	-	no_errors	HAUS1	HGNC	ENSG00000152240				40	0	0	56	5	8.19672
ALPK2	0	genome.wustl.edu	37	18	56246440	56246440	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	56246440	56246440	T	-	DEL	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	frame_shift_del	c.1568	p.K523fs	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				411	0	0	289	72	19.9446
ALPK2	0	genome.wustl.edu	37	18	56246941	56246941	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	56246941	56246941	A	-	DEL	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	frame_shift_del	c.1067	p.L356fs	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				70	0	0	57	22	27.8481
TMEM200C	0	genome.wustl.edu	37	18	5891806	5891806	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	5891806	5891806	C	-	DEL	TMEM200C	ENST00000383490	human	ensembl	74_37	-1	known	frame_shift_del	c.257	p.G86fs	0.000	pfam_DUF2371_TMEM200	pfam_DUF2371_TMEM200	-	no_errors	TMEM200C	HGNC	ENSG00000206432				45	0	0	35	6	14.6341
CDH19	0	genome.wustl.edu	37	18	64211957	64211957	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	18	64211957	64211957	T	-	DEL	CDH19	ENST00000262150	human	ensembl	74_37	-1	known	frame_shift_del	c.959	p.K320fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991				20	0	0	16	5	23.8095
ZNF563	0	genome.wustl.edu	37	19	12430216	12430217	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	12430216	12430217	-	A	INS	ZNF563	ENST00000293725	human	ensembl	74_37	-1	known	frame_shift_ins	c.623_622	p.W208fs	0.001:0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF563	HGNC	ENSG00000188868				113	0	0	101	14	12.1739
RTBDN	0	genome.wustl.edu	37	19	12939514	12939514	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	12939514	12939514	C	-	DEL	RTBDN	ENST00000322912	human	ensembl	74_37	-1	known	frame_shift_del	c.418	p.V140fs	0.047	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	RTBDN	HGNC	ENSG00000132026				78	0	0	55	16	22.5352
GAMT	0	genome.wustl.edu	37	19	1398958	1398959	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	1398958	1398959	-	C	INS	GAMT	ENST00000447102	human	ensembl	74_37	-1	known	frame_shift_ins	c.527_526	p.E176fs	0.999:0.994	NULL	NULL	-	no_errors	GAMT	HGNC	ENSG00000130005				96	0	0	62	16	20.5128
NOTCH3	0	genome.wustl.edu	37	19	15296358	15296358	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	15296358	15296358	G	-	DEL	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	frame_shift_del	c.2084	p.P695fs	0.003	pirsf_Notch,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				81	0	0	46	14	23.3333
MBD3	0	genome.wustl.edu	37	19	1578372	1578374	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	1578372	1578374	CTC	-	DEL	MBD3	ENST00000156825	human	ensembl	74_37	-1	known	in_frame_del	c.843_841	p.E281in_frame_del	0.902:0.992:1.000	superfamily_ARM-type_fold	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655				17	0	0	22	4	15.3846
COMP	0	genome.wustl.edu	37	19	18896845	18896847	+	In_Frame_Del	DEL	GTC	GTC	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	GTC	GTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	18896845	18896847	GTC	-	DEL	COMP	ENST00000222271	human	ensembl	74_37	-1	known	in_frame_del	c.1419_1417	p.D473in_frame_del	0.999:1.000:1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd_dom,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664				41	0	0	48	3	5.88235
IZUMO4	0	genome.wustl.edu	37	19	2099012	2099013	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	2099012	2099013	AG	-	DEL	IZUMO4	ENST00000395301	human	ensembl	74_37	+1	known	frame_shift_del	c.592_593	p.R198fs	0.988:0.994	NULL	NULL	-	no_errors	IZUMO4	HGNC	ENSG00000099840				199	0	0	159	37	18.8776
GIPC3	0	genome.wustl.edu	37	19	3589526	3589527	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	3589526	3589527	-	G	INS	GIPC3	ENST00000322315	human	ensembl	74_37	+1	known	frame_shift_ins	c.678_679	p.A228fs	0.411:0.803	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC3	HGNC	ENSG00000179855				107	0	0	91	11	10.7843
ARHGAP33	0	genome.wustl.edu	37	19	36278096	36278096	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	36278096	36278096	C	-	DEL	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	frame_shift_del	c.2629	p.P878fs	0.992	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777				157	0	0	127	10	7.29927
SYNE4	0	genome.wustl.edu	37	19	36499537	36499538	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	36499537	36499538	-	G	INS	SYNE4	ENST00000324444	human	ensembl	74_37	-1	known	frame_shift_ins	c.47_46	p.L16fs	0.042:0.046	NULL	pfam_KASH,pfscan_KASH	-	no_errors	SYNE4	HGNC	ENSG00000181392				26	0	0	17	5	22.7273
HNRNPL	0	genome.wustl.edu	37	19	39330958	39330959	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	39330958	39330959	-	G	INS	HNRNPL	ENST00000221419	human	ensembl	74_37	-1	known	frame_shift_ins	c.1011_1010	p.P338fs	1.000:1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824				22	0	0	27	6	18.1818
DAPK3	0	genome.wustl.edu	37	19	3959269	3959271	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	3959269	3959271	CCT	-	DEL	DAPK3	ENST00000301264	human	ensembl	74_37	-1	known	in_frame_del	c.1195_1193	p.E398in_frame_del	1.000:1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DAPK3	HGNC	ENSG00000167657				9	0	0	11	5	31.25
PLEKHG2	0	genome.wustl.edu	37	19	39913906	39913906	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	39913906	39913906	G	-	DEL	PLEKHG2	ENST00000409794	human	ensembl	74_37	+1	known	frame_shift_del	c.2212	p.V739fs	0.008	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924				108	0	0	99	7	6.60377
AXL	0	genome.wustl.edu	37	19	41743896	41743896	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	41743896	41743896	C	-	DEL	AXL	ENST00000301178	human	ensembl	74_37	+1	known	frame_shift_del	c.831	p.P279fs	0.874	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601				81	0	0	64	30	31.9149
HNRNPUL1	0	genome.wustl.edu	37	19	41808818	41808818	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	41808818	41808818	G	-	DEL	HNRNPUL1	ENST00000392006	human	ensembl	74_37	+1	known	frame_shift_del	c.1936	p.G647fs	0.979	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323				107	0	0	94	6	6
SCAF1	0	genome.wustl.edu	37	19	50158041	50158042	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	50158041	50158042	-	C	INS	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	frame_shift_ins	c.3532_3533	p.T1181fs	0.839:0.934	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				36	0	0	37	3	7.5
POLD1	0	genome.wustl.edu	37	19	50905323	50905324	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	50905323	50905324	-	G	INS	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	frame_shift_ins	c.531_532	p.R179fs	0.043:0.061	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822				101	0	0	72	15	17.2414
KDM4B	0	genome.wustl.edu	37	19	5144151	5144151	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	5144151	5144151	G	-	DEL	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	frame_shift_del	c.2724	p.G910fs	0.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				103	0	0	62	15	19.4805
PTPRS	0	genome.wustl.edu	37	19	5222731	5222731	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	5222731	5222731	G	-	DEL	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	frame_shift_del	c.3075	p.V1026fs	0.579	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				30	0	0	35	4	10.2564
ZNF787	0	genome.wustl.edu	37	19	56600346	56600346	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	56600346	56600346	G	-	DEL	ZNF787	ENST00000270459	human	ensembl	74_37	-1	known	frame_shift_del	c.195	p.Y66fs	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF787	HGNC	ENSG00000142409				35	0	0	14	3	17.6471
NRTN	0	genome.wustl.edu	37	19	5824290	5824290	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	5824290	5824290	C	-	DEL	NRTN	ENST00000303212	human	ensembl	74_37	+1	known	frame_shift_del	c.114	p.L40fs	0.829	NULL	pfam_TGF-b_C	-	no_errors	NRTN	HGNC	ENSG00000171119				20	0	0	18	4	18.1818
LRRC8E	0	genome.wustl.edu	37	19	7965708	7965709	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	7965708	7965709	-	G	INS	LRRC8E	ENST00000306708	human	ensembl	74_37	+1	known	frame_shift_ins	c.2301_2302	p.L769fs	0.486:0.146	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017				100	0	0	68	12	15
MAP2K7	0	genome.wustl.edu	37	19	7975006	7975006	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	7975006	7975006	G	-	DEL	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	frame_shift_del	c.325	p.G110fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				39	0	0	26	5	16.129
FBN3	0	genome.wustl.edu	37	19	8171075	8171075	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	19	8171075	8171075	C	-	DEL	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	frame_shift_del	c.4730	p.G1577fs	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				76	0	0	61	16	20.7792
ENSG00000223947	0	genome.wustl.edu	37	2	101611849	101611850	+	RNA	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	101611849	101611850	-	T	INS	ENSG00000223947	ENST00000452364	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.004	-	-	-	no_errors	AC016738.4	Clone_based_vega_gene	ENSG00000223947				106	0	0	68	24	26.087
SAP130	0	genome.wustl.edu	37	2	128774049	128774050	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	128774049	128774050	-	G	INS	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	frame_shift_ins	c.499_498	p.K166fs	1.000:1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715				108	0	0	86	20	18.8679
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				99	0	0	71	40	36.036
NR4A2	0	genome.wustl.edu	37	2	157185028	157185029	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	157185028	157185029	-	T	INS	NR4A2	ENST00000539077	human	ensembl	74_37	-1	known	frame_shift_ins	c.915_914	p.N305fs	0.988:1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NURR_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A2	HGNC	ENSG00000153234				64	0	0	66	12	15.3846
FIGN	0	genome.wustl.edu	37	2	164467542	164467543	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	164467542	164467543	-	C	INS	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	frame_shift_ins	c.800_799	p.A267fs	1.000:1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263				74	0	0	55	7	11.2903
COBLL1	0	genome.wustl.edu	37	2	165551296	165551296	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	165551296	165551296	A	-	DEL	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_del	c.2921	p.L974fs	0.972	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				18	0	0	20	5	20
RAD51AP2	0	genome.wustl.edu	37	2	17698737	17698737	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	17698737	17698737	T	-	DEL	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	frame_shift_del	c.946	p.T316fs	0.003	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				42	0	0	29	16	35.5556
HOXD8	0	genome.wustl.edu	37	2	176995417	176995417	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	176995417	176995417	C	-	DEL	HOXD8	ENST00000313173	human	ensembl	74_37	+1	known	frame_shift_del	c.323	p.P110fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD8	HGNC	ENSG00000175879				57	0	0	40	14	25.9259
GEN1	0	genome.wustl.edu	37	2	17952518	17952518	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	17952518	17952518	A	-	DEL	GEN1	ENST00000317402	human	ensembl	74_37	+1	known	frame_shift_del	c.766	p.K257fs	0.977	superfamily_5-3_exonuclease_C	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	GEN1	HGNC	ENSG00000178295				145	0	0	143	10	6.53595
TTN	0	genome.wustl.edu	37	2	179633504	179633504	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	179633504	179633504	T	-	DEL	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_del	c.9059	p.K3020fs	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				61	0	0	69	17	19.7674
NUP35	0	genome.wustl.edu	37	2	184023121	184023121	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	184023121	184023121	A	-	DEL	NUP35	ENST00000295119	human	ensembl	74_37	+1	known	frame_shift_del	c.720	p.K241fs	0.992	pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53	pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53	-	no_errors	NUP35	HGNC	ENSG00000163002				103	0	0	97	26	21.1382
DNAH7	0	genome.wustl.edu	37	2	196642652	196642653	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	196642652	196642653	CT	-	DEL	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_del	c.10936_10935	p.R3645fs	1.000:0.984	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				78	0	0	54	13	19.403
GTF3C3	0	genome.wustl.edu	37	2	197657761	197657762	+	In_Frame_Ins	INS	-	-	TCC			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	197657761	197657762	-	TCC	INS	GTF3C3	ENST00000263956	human	ensembl	74_37	-1	known	in_frame_ins	c.330_329	p.112in_frame_insE	0.995:0.984	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041				50	0	0	52	7	11.8644
ENSG00000257045	0	genome.wustl.edu	37	2	200193649	200193649	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	200193649	200193649	A	-	DEL	ENSG00000257045	ENST00000489557	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-486F17.1	Clone_based_vega_gene	ENSG00000257045				27	0	0	19	3	13.6364
TNS1	0	genome.wustl.edu	37	2	218696258	218696258	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	218696258	218696258	G	-	DEL	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	frame_shift_del	c.2918	p.P973fs	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				39	0	0	30	4	11.7647
AAMP	0	genome.wustl.edu	37	2	219134766	219134766	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	219134766	219134766	G	-	DEL	AAMP	ENST00000248450	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.P15fs	0.997	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AAMP	HGNC	ENSG00000127837				499	1	0.2	409	77	15.8436
SPEG	0	genome.wustl.edu	37	2	220347922	220347922	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	220347922	220347922	C	-	DEL	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	frame_shift_del	c.5737	p.S1915fs	0.943	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				22	0	0	12	6	33.3333
ECEL1	0	genome.wustl.edu	37	2	233349513	233349513	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	233349513	233349513	G	-	DEL	ECEL1	ENST00000304546	human	ensembl	74_37	-1	known	frame_shift_del	c.1057	p.H353fs	0.329	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551				163	0	0	112	9	7.43802
UGT1A8	0	genome.wustl.edu	37	2	234669581	234669582	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	234669581	234669582	-	T	INS	UGT1A8	ENST00000305208	human	ensembl	74_37	+1	known	frame_shift_ins	c.648_649	p.S217fs	0.000:0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A8	HGNC	ENSG00000242366				266	0	0	209	14	6.27803
CAPN10	0	genome.wustl.edu	37	2	241533462	241533462	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	241533462	241533462	G	-	DEL	CAPN10	ENST00000391984	human	ensembl	74_37	+1	known	frame_shift_del	c.828	p.G278fs	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN10	HGNC	ENSG00000142330				46	0	0	40	11	21.5686
AGXT	0	genome.wustl.edu	37	2	241808308	241808308	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	241808308	241808308	C	-	DEL	AGXT	ENST00000307503	human	ensembl	74_37	+1	known	frame_shift_del	c.26	p.K12fs	0.001	superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AGXT	HGNC	ENSG00000172482				24	0	0	22	5	18.5185
AGBL5	0	genome.wustl.edu	37	2	27282134	27282136	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	27282134	27282136	AGC	-	DEL	AGBL5	ENST00000360131	human	ensembl	74_37	+1	known	in_frame_del	c.1951_1953	p.S654in_frame_del	0.904:1.000:1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693				97	0	0	75	12	13.7931
CLIP4	0	genome.wustl.edu	37	2	29379233	29379233	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	29379233	29379233	A	-	DEL	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	frame_shift_del	c.1179	p.D396fs	0.787	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295				36	0	0	38	13	25.4902
UGP2	0	genome.wustl.edu	37	2	64109785	64109788	+	Frame_Shift_Del	DEL	AGTG	AGTG	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AGTG	AGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	64109785	64109788	AGTG	-	DEL	UGP2	ENST00000337130	human	ensembl	74_37	+1	known	frame_shift_del	c.441	p.E147fs	1.000	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	-	no_errors	UGP2	HGNC	ENSG00000169764				143	0	0	92	19	17.1171
FBXO41	0	genome.wustl.edu	37	2	73490910	73490910	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	73490910	73490910	C	-	DEL	FBXO41	ENST00000295133	human	ensembl	74_37	-1	known	frame_shift_del	c.2154	p.N719fs	0.977	NULL	superfamily_F-box_dom	-	no_errors	FBXO41	HGNC	ENSG00000163013				82	0	0	60	7	10.4478
TET3	0	genome.wustl.edu	37	2	74275076	74275076	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	74275076	74275076	C	-	DEL	TET3	ENST00000409262	human	ensembl	74_37	+1	known	frame_shift_del	c.1627	p.P544fs	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605				44	0	0	35	14	28.5714
RNF103	0	genome.wustl.edu	37	2	86831015	86831015	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	86831015	86831015	T	-	DEL	RNF103	ENST00000237455	human	ensembl	74_37	-1	known	frame_shift_del	c.2009	p.K670fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305				110	0	0	82	16	16.3265
KRCC1	0	genome.wustl.edu	37	2	88327536	88327536	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	88327536	88327536	T	-	DEL	KRCC1	ENST00000347055	human	ensembl	74_37	-1	known	frame_shift_del	c.547	p.S183fs	0.005	NULL	NULL	-	no_errors	KRCC1	HGNC	ENSG00000172086				39	0	0	62	8	11.4286
ANKRD23	0	genome.wustl.edu	37	2	97507821	97507821	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	2	97507821	97507821	G	-	DEL	ANKRD23	ENST00000318357	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.R93fs	0.906	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD23	HGNC	ENSG00000163126				112	0	0	120	7	5.51181
SNPH	0	genome.wustl.edu	37	20	1286385	1286386	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	1286385	1286386	-	C	INS	SNPH	ENST00000381867	human	ensembl	74_37	+1	known	frame_shift_ins	c.1304_1305	p.N437fs	0.999:1.000	NULL	NULL	-	no_errors	SNPH	HGNC	ENSG00000101298				18	0	0	11	7	38.8889
DNMT3B	0	genome.wustl.edu	37	20	31384650	31384651	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	31384650	31384651	-	G	INS	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	frame_shift_ins	c.1352_1353	p.L454fs	1.000:1.000	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				185	0	0	143	35	19.6629
TGIF2	0	genome.wustl.edu	37	20	35219613	35219616	+	Frame_Shift_Del	DEL	ACTC	ACTC	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	ACTC	ACTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	35219613	35219616	ACTC	-	DEL	TGIF2	ENST00000373872	human	ensembl	74_37	+1	known	frame_shift_del	c.493_496	p.T165fs	0.733:0.991:0.991:1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF2	HGNC	ENSG00000118707				62	0	0	40	10	20
EMILIN3	0	genome.wustl.edu	37	20	39990829	39990829	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	39990829	39990829	C	-	DEL	EMILIN3	ENST00000332312	human	ensembl	74_37	-1	known	frame_shift_del	c.1380	p.W461fs	0.767	NULL	pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMILIN3	HGNC	ENSG00000183798				169	0	0	146	40	21.5054
NCOA5	0	genome.wustl.edu	37	20	44691404	44691404	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	20	44691404	44691404	G	-	DEL	NCOA5	ENST00000290231	human	ensembl	74_37	-1	known	frame_shift_del	c.1275	p.T426fs	1.000	NULL	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160				229	0	0	195	13	6.25
GART	0	genome.wustl.edu	37	21	34882122	34882122	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	34882122	34882122	T	-	DEL	GART	ENST00000381815	human	ensembl	74_37	-1	known	frame_shift_del	c.2420	p.K807fs	0.844	NULL	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C_dom,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth_N_dom,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131				51	0	0	50	10	16.6667
CBS	0	genome.wustl.edu	37	21	44488678	44488679	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	44488678	44488679	-	C	INS	CBS	ENST00000398168	human	ensembl	74_37	-1	known	frame_shift_ins	c.257_256	p.D86fs	0.990:0.622	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Cysta_beta_synth	pfam_Trp_syn_b_sub_like_PLP_eny_SF,pfam_CBS_dom,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,smart_CBS_dom,tigrfam_Cysta_beta_synth	-	no_errors	CBS	HGNC	ENSG00000160200				147	0	0	124	7	5.34351
KRTAP10-12	0	genome.wustl.edu	37	21	46117409	46117409	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	21	46117409	46117409	C	-	DEL	KRTAP10-12	ENST00000400365	human	ensembl	74_37	+1	known	frame_shift_del	c.293	p.C100fs	0.695	NULL	NULL	-	no_errors	KRTAP10-12	HGNC	ENSG00000189169				366	0	0	219	29	11.6935
ZDHHC8	0	genome.wustl.edu	37	22	20130522	20130522	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	20130522	20130522	C	-	DEL	ZDHHC8	ENST00000405930	human	ensembl	74_37	+1	known	frame_shift_del	c.1369	p.T459fs	0.997	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904				38	0	0	21	5	19.2308
SMTN	0	genome.wustl.edu	37	22	31487799	31487799	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	31487799	31487799	C	-	DEL	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	frame_shift_del	c.1598	p.S536fs	0.994	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				22	0	0	11	4	26.6667
LIMK2	0	genome.wustl.edu	37	22	31672776	31672777	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	31672776	31672777	-	C	INS	LIMK2	ENST00000340552	human	ensembl	74_37	+1	putative	frame_shift_ins	c.1711_1712	p.G574fs	0.995:0.996	smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PP1_inhibitor,pfam_PDZ,pfam_Znf_LIM,superfamily_Kinase-like_dom,superfamily_PP1_inhibitor,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541				25	0	0	19	6	24
PKDREJ	0	genome.wustl.edu	37	22	46657108	46657109	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	46657108	46657109	-	A	INS	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	frame_shift_ins	c.2112_2111	p.L704fs	0.000:0.014	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				65	0	0	76	10	11.6279
CELSR1	0	genome.wustl.edu	37	22	46776791	46776791	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	22	46776791	46776791	C	-	DEL	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	frame_shift_del	c.7150	p.A2384fs	0.000	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				55	0	0	39	9	18.75
ENSG00000206567	0	genome.wustl.edu	37	3	10050174	10050174	+	RNA	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	10050174	10050174	G	-	DEL	ENSG00000206567	ENST00000383808	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.800	-	-	-	no_errors	AC022007.5	Clone_based_vega_gene	ENSG00000206567				92	0	0	83	8	8.79121
PLA1A	0	genome.wustl.edu	37	3	119316796	119316796	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	119316796	119316796	G	-	DEL	PLA1A	ENST00000273371	human	ensembl	74_37	+1	known	frame_shift_del	c.36	p.G14fs	0.009	pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	PLA1A	HGNC	ENSG00000144837				24	0	0	6	3	33.3333
POLQ	0	genome.wustl.edu	37	3	121207489	121207489	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	121207489	121207489	A	-	DEL	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	frame_shift_del	c.4289	p.L1430fs	0.152	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				36	0	0	18	9	33.3333
DIRC2	0	genome.wustl.edu	37	3	122591386	122591386	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	122591386	122591386	T	-	DEL	DIRC2	ENST00000261038	human	ensembl	74_37	+1	known	frame_shift_del	c.1263	p.L423fs	0.977	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	DIRC2	HGNC	ENSG00000138463				51	0	0	55	22	28.5714
KALRN	0	genome.wustl.edu	37	3	123983389	123983389	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	123983389	123983389	G	-	DEL	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	frame_shift_del	c.302	p.G102fs	1.000	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				26	0	0	34	2	5.55556
NPHP3	0	genome.wustl.edu	37	3	132418282	132418283	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	132418282	132418283	-	T	INS	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	frame_shift_ins	c.1900_1899	p.H633fs	1.000:1.000	superfamily_P-loop_NTPase	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				36	0	0	40	11	21.5686
ATR	0	genome.wustl.edu	37	3	142261555	142261555	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	142261555	142261555	A	-	DEL	ATR	ENST00000350721	human	ensembl	74_37	-1	known	frame_shift_del	c.3402	p.F1134fs	1.000	pfam_UME,superfamily_ARM-type_fold,smart_UME	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				50	0	0	54	5	8.47458
PRKCI	0	genome.wustl.edu	37	3	169998128	169998128	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	169998128	169998128	A	-	DEL	PRKCI	ENST00000295797	human	ensembl	74_37	+1	known	frame_shift_del	c.819	p.T276fs	0.995	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_PKC_zeta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCI	HGNC	ENSG00000163558				58	0	0	54	10	15.625
ABCC5	0	genome.wustl.edu	37	3	183665257	183665257	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	183665257	183665257	A	-	DEL	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	frame_shift_del	c.3269	p.L1090fs	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770				31	0	0	31	3	8.82353
MB21D2	0	genome.wustl.edu	37	3	192517004	192517004	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	192517004	192517004	T	-	DEL	MB21D2	ENST00000392452	human	ensembl	74_37	-1	known	frame_shift_del	c.647	p.N216fs	1.000	NULL	pfam_Mab-21_dom	-	no_errors	MB21D2	HGNC	ENSG00000180611				96	0	0	74	24	24.4898
ZDHHC19	0	genome.wustl.edu	37	3	195925221	195925221	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	195925221	195925221	G	-	DEL	ZDHHC19	ENST00000296326	human	ensembl	74_37	-1	known	frame_shift_del	c.875	p.P292fs	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC19	HGNC	ENSG00000163958				59	0	0	56	20	26.3158
HMGB1P5	0	genome.wustl.edu	37	3	22423968	22423968	+	RNA	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	22423968	22423968	T	-	DEL	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967				50	0	0	48	5	9.43396
CTNNB1	0	genome.wustl.edu	37	3	41275204	41275204	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	41275204	41275204	G	-	DEL	CTNNB1	ENST00000349496	human	ensembl	74_37	+1	known	frame_shift_del	c.1370	p.E458fs	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	CTNNB1	HGNC	ENSG00000168036				166	0	0	111	33	22.9167
XCR1	0	genome.wustl.edu	37	3	46063400	46063400	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	46063400	46063400	A	-	DEL	XCR1	ENST00000309285	human	ensembl	74_37	-1	known	frame_shift_del	c.40	p.Y14fs	0.080	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_XCR1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	-	no_errors	XCR1	HGNC	ENSG00000173578				82	0	0	59	17	22.3684
DOCK3	0	genome.wustl.edu	37	3	51352538	51352538	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	51352538	51352538	A	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.3381	p.N1129fs	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				72	0	0	76	6	7.31707
CACNA1D	0	genome.wustl.edu	37	3	53699823	53699823	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	53699823	53699823	T	-	DEL	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	frame_shift_del	c.903	p.F303fs	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				60	0	0	60	5	7.69231
DNAH12	0	genome.wustl.edu	37	3	57509313	57509313	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	57509313	57509313	T	-	DEL	DNAH12	ENST00000351747	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.G93fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844				46	0	0	55	14	20.2899
CADPS	0	genome.wustl.edu	37	3	62535649	62535649	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	3	62535649	62535649	G	-	DEL	CADPS	ENST00000383710	human	ensembl	74_37	-1	known	frame_shift_del	c.1895	p.P632fs	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618				146	0	0	168	10	5.61798
C4orf3	0	genome.wustl.edu	37	4	120221496	120221497	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	120221496	120221497	-	A	INS	C4orf3	ENST00000399075	human	ensembl	74_37	-1	known	frame_shift_ins	c.594_593	p.L198fs	0.979:0.952	NULL	NULL	-	no_errors	C4orf3	HGNC	ENSG00000164096				115	0	0	90	17	15.8879
KIAA1109	0	genome.wustl.edu	37	4	123128303	123128304	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	123128303	123128304	-	T	INS	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	frame_shift_ins	c.1537_1538	p.S515fs	1.000:1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				161	0	0	166	10	5.68182
ZNF330	0	genome.wustl.edu	37	4	142143532	142143532	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	142143532	142143532	A	-	DEL	ZNF330	ENST00000262990	human	ensembl	74_37	+1	known	frame_shift_del	c.7	p.K5fs	1.000	pfam_NOA36	pfam_NOA36	-	no_errors	ZNF330	HGNC	ENSG00000109445				20	0	0	26	11	29.7297
FBXW7	0	genome.wustl.edu	37	4	153268090	153268090	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	153268090	153268090	T	-	DEL	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	frame_shift_del	c.718	p.M240fs	1.000	NULL	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				162	0	0	143	22	13.3333
DDX60L	0	genome.wustl.edu	37	4	169341447	169341448	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	169341447	169341448	-	A	INS	DDX60L	ENST00000260184	human	ensembl	74_37	-1	known	frame_shift_ins	c.2479_2478	p.T826fs	0.076:0.034	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381				39	0	0	42	12	22.2222
SH3RF1	0	genome.wustl.edu	37	4	170057551	170057551	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	170057551	170057551	G	-	DEL	SH3RF1	ENST00000284637	human	ensembl	74_37	-1	known	frame_shift_del	c.986	p.P329fs	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox,prints_SH3_domain	-	no_errors	SH3RF1	HGNC	ENSG00000154447				184	0	0	169	14	7.65027
FAM149A	0	genome.wustl.edu	37	4	187077174	187077174	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	187077174	187077174	A	-	DEL	FAM149A	ENST00000356371	human	ensembl	74_37	+1	known	frame_shift_del	c.1277	p.K427fs	0.044	NULL	pfam_DUF3719	-	no_errors	FAM149A	HGNC	ENSG00000109794				54	0	0	48	16	25
RBPJ	0	genome.wustl.edu	37	4	26417098	26417098	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	26417098	26417098	T	-	DEL	RBPJ	ENST00000342295	human	ensembl	74_37	+1	known	frame_shift_del	c.196	p.C68fs	1.000	pfam_LAG1_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,pfam_IPT,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJ	HGNC	ENSG00000168214				41	0	0	35	9	20.4545
GRK4	0	genome.wustl.edu	37	4	3040280	3040280	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	3040280	3040280	A	-	DEL	GRK4	ENST00000504308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GRK4	HGNC	ENSG00000125388				18	0	0	17	9	34.6154
RBM47	0	genome.wustl.edu	37	4	40439902	40439903	+	Frame_Shift_Ins	INS	-	-	CG			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	40439902	40439903	-	CG	INS	RBM47	ENST00000295971	human	ensembl	74_37	-1	known	frame_shift_ins	c.1009_1008	p.A336fs	0.473:0.106	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694				54	0	0	34	3	8.10811
LIMCH1	0	genome.wustl.edu	37	4	41621389	41621390	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	41621389	41621390	AG	-	DEL	LIMCH1	ENST00000503057	human	ensembl	74_37	+1	known	frame_shift_del	c.390_391	p.E133fs	0.000:0.999	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMCH1	HGNC	ENSG00000064042				64	0	0	43	14	24.5614
CLOCK	0	genome.wustl.edu	37	4	56336954	56336954	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	56336954	56336954	A	-	DEL	CLOCK	ENST00000309964	human	ensembl	74_37	-1	known	frame_shift_del	c.368	p.L123fs	1.000	pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS,prints_Nuc_translocat	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat	-	no_errors	CLOCK	HGNC	ENSG00000134852				125	0	0	111	38	25.5034
POLR2B	0	genome.wustl.edu	37	4	57861565	57861567	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	57861565	57861567	GAG	-	DEL	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	in_frame_del	c.725_727	p.G244in_frame_del	1.000:1.000:1.000	pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				166	0	0	113	17	13.0769
EPHA5	0	genome.wustl.edu	37	4	66356280	66356281	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	66356280	66356281	-	CA	INS	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	frame_shift_ins	c.1217_1216	p.E406fs	1.000:1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				78	0	0	91	8	8.08081
SULT1B1	0	genome.wustl.edu	37	4	70620845	70620845	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	70620845	70620845	T	-	DEL	SULT1B1	ENST00000310613	human	ensembl	74_37	-1	known	frame_shift_del	c.91	p.I31fs	0.000	superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1B1	HGNC	ENSG00000173597				196	0	0	195	16	7.58294
SLC10A6	0	genome.wustl.edu	37	4	87769943	87769943	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	4	87769943	87769943	C	-	DEL	SLC10A6	ENST00000273905	human	ensembl	74_37	-1	known	frame_shift_del	c.326	p.G109fs	1.000	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A6	HGNC	ENSG00000145283				116	0	0	96	7	6.79612
SLC12A7	0	genome.wustl.edu	37	5	1074698	1074698	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	1074698	1074698	G	-	DEL	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	frame_shift_del	c.2056	p.H686fs	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504				105	0	0	73	8	9.87654
PCDHA9	0	genome.wustl.edu	37	5	140230509	140230509	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140230509	140230509	T	-	DEL	PCDHA9	ENST00000378122	human	ensembl	74_37	+1	known	frame_shift_del	c.2429	p.L813fs	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961				48	0	0	78	27	25.7143
PCDHGB1	0	genome.wustl.edu	37	5	140730637	140730638	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140730637	140730638	-	A	INS	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	frame_shift_ins	c.810_811	p.N270fs	0.000:0.994	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221				187	0	0	150	8	5.06329
PCDHGC3	0	genome.wustl.edu	37	5	140857742	140857742	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	140857742	140857742	A	-	DEL	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	frame_shift_del	c.2059	p.N689fs	0.998	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				221	0	0	175	56	24.2424
TRIO	0	genome.wustl.edu	37	5	14487781	14487781	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	14487781	14487781	C	-	DEL	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	frame_shift_del	c.7044	p.V2351fs	1.000	superfamily_Capsid/spike_ssDNA_virus	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				70	0	0	54	10	15.625
TCERG1	0	genome.wustl.edu	37	5	145886723	145886723	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	145886723	145886723	A	-	DEL	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	frame_shift_del	c.2863	p.K957fs	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				80	0	0	90	19	17.4312
SPINK5	0	genome.wustl.edu	37	5	147499875	147499875	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	147499875	147499875	A	-	DEL	SPINK5	ENST00000359874	human	ensembl	74_37	+1	known	frame_shift_del	c.2459	p.K823fs	0.998	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK5	HGNC	ENSG00000133710				31	0	0	20	5	20
WWC1	0	genome.wustl.edu	37	5	167850877	167850878	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	167850877	167850878	CT	-	DEL	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	frame_shift_del	c.1614_1615	p.S541fs	1.000:1.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645				80	0	0	66	7	9.58904
TSPAN17	0	genome.wustl.edu	37	5	176078866	176078866	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	176078866	176078866	G	-	DEL	TSPAN17	ENST00000310032	human	ensembl	74_37	+1	known	frame_shift_del	c.250	p.A85fs	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN17	HGNC	ENSG00000048140				127	0	0	102	17	14.2857
HNRNPAB	0	genome.wustl.edu	37	5	177633829	177633829	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	177633829	177633829	G	-	DEL	HNRNPAB	ENST00000358344	human	ensembl	74_37	+1	known	frame_shift_del	c.475	p.G160fs	0.984	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPAB	HGNC	ENSG00000197451				104	0	0	94	7	6.93069
FLT4	0	genome.wustl.edu	37	5	180053022	180053023	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	180053022	180053023	-	G	INS	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	frame_shift_ins	c.1268_1267	p.Q423fs	1.000:1.000	pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				111	0	0	113	7	5.83333
CDH10	0	genome.wustl.edu	37	5	24537692	24537693	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	24537692	24537693	-	T	INS	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	frame_shift_ins	c.323_322	p.T108fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				63	0	0	54	8	12.9032
NIPBL	0	genome.wustl.edu	37	5	37010248	37010248	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	37010248	37010248	T	-	DEL	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	frame_shift_del	c.4481	p.L1495fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				77	0	0	87	7	7.44681
C5orf42	0	genome.wustl.edu	37	5	37167306	37167306	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	37167306	37167306	T	-	DEL	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	frame_shift_del	c.7243	p.T2415fs	0.346	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				39	0	0	46	8	14.8148
C6	0	genome.wustl.edu	37	5	41181560	41181560	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	41181560	41181560	C	-	DEL	C6	ENST00000263413	human	ensembl	74_37	-1	known	frame_shift_del	c.828	p.S277fs	0.000	NULL	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537				69	0	0	80	7	8.04598
MCCC2	0	genome.wustl.edu	37	5	70939716	70939716	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	70939716	70939716	A	-	DEL	MCCC2	ENST00000340941	human	ensembl	74_37	+1	known	frame_shift_del	c.1143	p.K383fs	0.939	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	MCCC2	HGNC	ENSG00000131844				111	0	0	93	6	6.06061
FCHO2	0	genome.wustl.edu	37	5	72264329	72264329	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	72264329	72264329	A	-	DEL	FCHO2	ENST00000341845	human	ensembl	74_37	+1	known	frame_shift_del	c.38	p.N15fs	1.000	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	FCHO2	HGNC	ENSG00000157107				11	0	0	5	3	37.5
WDR41	0	genome.wustl.edu	37	5	76728856	76728856	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	5	76728856	76728856	A	-	DEL	WDR41	ENST00000512033	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	WDR41	HGNC	ENSG00000164253				12	0	0	13	3	18.75
MCHR2	0	genome.wustl.edu	37	6	100382358	100382358	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	100382358	100382358	A	-	DEL	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	frame_shift_del	c.623	p.F208fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034				69	0	0	82	15	15.4639
ASCC3	0	genome.wustl.edu	37	6	101296172	101296173	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	101296172	101296173	-	T	INS	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	frame_shift_ins	c.653_652	p.T218fs	0.712:0.699	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				35	0	0	56	17	23.2877
ASCC3	0	genome.wustl.edu	37	6	101296336	101296336	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	101296336	101296336	A	-	DEL	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	frame_shift_del	c.489	p.F163fs	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				47	0	0	61	10	14.0845
ENSG00000271730	0	genome.wustl.edu	37	6	109319968	109319969	+	RNA	DEL	AA	AA	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	109319968	109319969	AA	-	DEL	ENSG00000271730	ENST00000605885	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-787I22.3	Clone_based_vega_gene	ENSG00000271730				51	0	0	45	7	13.4615
CEP57L1	0	genome.wustl.edu	37	6	109481813	109481814	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	109481813	109481814	AA	-	DEL	CEP57L1	ENST00000359793	human	ensembl	74_37	+1	known	frame_shift_del	c.1055_1056	p.H354fs	0.001:0.000	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57L1	HGNC	ENSG00000183137				124	0	0	116	9	7.2
WISP3	0	genome.wustl.edu	37	6	112389433	112389434	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	112389433	112389434	-	A	INS	WISP3	ENST00000361714	human	ensembl	74_37	+1	known	frame_shift_ins	c.669_670	p.C226fs	1.000:1.000	superfamily_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt	-	no_errors	WISP3	HGNC	ENSG00000112761				43	0	0	43	10	18.8679
FOXQ1	0	genome.wustl.edu	37	6	1313402	1313402	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	1313402	1313402	T	-	DEL	FOXQ1	ENST00000296839	human	ensembl	74_37	+1	known	frame_shift_del	c.463	p.F156fs	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXQ1	HGNC	ENSG00000164379				75	0	0	65	12	15.5844
MOXD1	0	genome.wustl.edu	37	6	132722507	132722507	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	132722507	132722507	C	-	DEL	MOXD1	ENST00000367963	human	ensembl	74_37	-1	known	frame_shift_del	c.59	p.G20fs	0.022	NULL	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931				10	0	0	4	2	33.3333
HECA	0	genome.wustl.edu	37	6	139488147	139488147	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	139488147	139488147	G	-	DEL	HECA	ENST00000367658	human	ensembl	74_37	+1	known	frame_shift_del	c.998	p.G335fs	1.000	superfamily_Glycoside_hydrolase_SF	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406				166	0	0	121	9	6.92308
PHACTR2	0	genome.wustl.edu	37	6	144086413	144086414	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	144086413	144086414	-	A	INS	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	frame_shift_ins	c.710_711	p.T240fs	0.746:0.153	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419				84	0	0	82	16	16.3265
ENSG00000235381	0	genome.wustl.edu	37	6	155575539	155575539	+	RNA	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	155575539	155575539	C	-	DEL	ENSG00000235381	ENST00000435295	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-477D19.2	Clone_based_vega_gene	ENSG00000235381				81	0	0	48	11	18.6441
SYNJ2	0	genome.wustl.edu	37	6	158508009	158508009	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	158508009	158508009	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.3331	p.P1113fs	1.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				80	0	0	74	8	9.7561
TRIM27	0	genome.wustl.edu	37	6	28876796	28876796	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	28876796	28876796	A	-	DEL	TRIM27	ENST00000377199	human	ensembl	74_37	-1	known	frame_shift_del	c.840	p.F280fs	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM27	HGNC	ENSG00000204713				114	0	0	103	14	11.9658
OR2J1	0	genome.wustl.edu	37	6	29068729	29068729	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	29068729	29068729	A	-	DEL	OR2J1	ENST00000377171	human	ensembl	74_37	+1	known	frame_shift_del	c.10	p.N6fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2J1	HGNC	ENSG00000204702				27	0	0	29	11	27.5
OR2J2	0	genome.wustl.edu	37	6	29141422	29141422	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	29141422	29141422	A	-	DEL	OR2J2	ENST00000377167	human	ensembl	74_37	+1	known	frame_shift_del	c.10	p.N6fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2J2	HGNC	ENSG00000204700				79	0	0	94	5	5.05051
GPANK1	0	genome.wustl.edu	37	6	31630313	31630314	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	31630313	31630314	-	C	INS	GPANK1	ENST00000375893	human	ensembl	74_37	-1	known	frame_shift_ins	c.801_800	p.W268fs	1.000:1.000	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	pfam_G_patch_dom,superfamily_Ankyrin_rpt-contain_dom,smart_G_patch_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_G_patch_dom	-	no_errors	GPANK1	HGNC	ENSG00000204438				43	0	0	36	11	23.4043
GPSM3	0	genome.wustl.edu	37	6	32159189	32159189	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	32159189	32159189	C	-	DEL	GPSM3	ENST00000375040	human	ensembl	74_37	-1	known	frame_shift_del	c.437	p.G146fs	0.905	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	-	no_errors	GPSM3	HGNC	ENSG00000213654				185	0	0	127	38	23.0303
PTK7	0	genome.wustl.edu	37	6	43097013	43097013	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	43097013	43097013	G	-	DEL	PTK7	ENST00000476760	human	ensembl	74_37	+1	putative	frame_shift_del	c.378	p.G128fs	0.592	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PTK7	HGNC	ENSG00000112655				38	0	0	18	5	21.7391
CDC5L	0	genome.wustl.edu	37	6	44374080	44374081	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	44374080	44374081	-	A	INS	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	frame_shift_ins	c.779_780	p.D263fs	1.000:0.980	NULL	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				29	0	0	36	15	29.4118
CDC5L	0	genome.wustl.edu	37	6	44413590	44413590	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	44413590	44413590	C	-	DEL	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	frame_shift_del	c.2290	p.R765fs	1.000	NULL	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				128	0	0	125	7	5.30303
DST	0	genome.wustl.edu	37	6	56471451	56471451	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	56471451	56471451	A	-	DEL	DST	ENST00000370754	human	ensembl	74_37	-1	known	frame_shift_del	c.7876	p.Y2626fs	0.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				101	0	0	126	15	10.6383
OGFRL1	0	genome.wustl.edu	37	6	72006204	72006204	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	6	72006204	72006204	C	-	DEL	OGFRL1	ENST00000370435	human	ensembl	74_37	+1	known	frame_shift_del	c.486	p.L164fs	0.991	pfam_OGF_rcpt	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900				32	0	0	29	8	21.6216
TFEC	0	genome.wustl.edu	37	7	115594657	115594657	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	115594657	115594657	T	-	DEL	TFEC	ENST00000265440	human	ensembl	74_37	-1	known	frame_shift_del	c.422	p.K141fs	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFEC	HGNC	ENSG00000105967				45	0	0	52	15	22.3881
EPHB6	0	genome.wustl.edu	37	7	142566330	142566330	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	142566330	142566330	G	-	DEL	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	frame_shift_del	c.2119	p.G708fs	0.995	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				24	0	0	16	5	23.8095
KMT2C	0	genome.wustl.edu	37	7	151874148	151874148	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	151874148	151874148	T	-	DEL	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_del	c.8390	p.K2797fs	0.019	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				60	0	0	72	23	24.2105
ENSG00000224903	0	genome.wustl.edu	37	7	156450338	156450338	+	RNA	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	156450338	156450338	T	-	DEL	ENSG00000224903	ENST00000455709	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC005534.8	Clone_based_vega_gene	ENSG00000224903				36	0	0	42	4	8.69565
UBE3C	0	genome.wustl.edu	37	7	156976641	156976642	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	156976641	156976642	TC	-	DEL	UBE3C	ENST00000348165	human	ensembl	74_37	+1	known	frame_shift_del	c.1061_1062	p.P356fs	0.551:0.239	NULL	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335				187	0	0	140	24	14.6341
AHR	0	genome.wustl.edu	37	7	17378743	17378743	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	17378743	17378743	A	-	DEL	AHR	ENST00000242057	human	ensembl	74_37	+1	known	frame_shift_del	c.1294	p.N433fs	0.935	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHR	HGNC	ENSG00000106546				73	0	0	96	9	8.57143
FKBP9	0	genome.wustl.edu	37	7	33014803	33014804	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	33014803	33014804	-	C	INS	FKBP9	ENST00000538336	human	ensembl	74_37	+1	known	frame_shift_ins	c.536_537	p.N182fs	1.000:0.998	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP9	HGNC	ENSG00000122642				103	0	0	107	20	15.748
DDC	0	genome.wustl.edu	37	7	50531075	50531075	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	50531075	50531075	T	-	DEL	DDC	ENST00000357936	human	ensembl	74_37	-1	known	frame_shift_del	c.1297	p.I433fs	1.000	superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437				100	0	0	78	14	15.2174
MRPS17	0	genome.wustl.edu	37	7	56020948	56020948	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	56020948	56020948	A	-	DEL	MRPS17	ENST00000285298	human	ensembl	74_37	+1	known	frame_shift_del	c.60	p.M22fs	1.000	pfam_Ribosomal_S17,superfamily_NA-bd_OB-fold	pfam_Ribosomal_S17,superfamily_NA-bd_OB-fold	-	no_errors	MRPS17	HGNC	ENSG00000239789				115	0	0	105	7	6.25
DAGLB	0	genome.wustl.edu	37	7	6449932	6449932	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	6449932	6449932	C	-	DEL	DAGLB	ENST00000297056	human	ensembl	74_37	-1	known	frame_shift_del	c.1649	p.G550fs	0.052	NULL	pfam_Lipase_3	-	no_errors	DAGLB	HGNC	ENSG00000164535				43	0	0	35	6	14.6341
C7orf26	0	genome.wustl.edu	37	7	6639538	6639539	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	6639538	6639539	-	T	INS	C7orf26	ENST00000344417	human	ensembl	74_37	+1	known	frame_shift_ins	c.659_660	p.L222fs	1.000:0.988	NULL	NULL	-	no_errors	C7orf26	HGNC	ENSG00000146576				137	0	0	96	17	15.0442
CCDC146	0	genome.wustl.edu	37	7	76888377	76888378	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	76888377	76888378	-	A	INS	CCDC146	ENST00000285871	human	ensembl	74_37	+1	known	frame_shift_ins	c.750_751	p.V252fs	0.999:1.000	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205				31	0	0	33	8	19.5122
MTERF	0	genome.wustl.edu	37	7	91509449	91509449	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	7	91509449	91509449	A	-	DEL	MTERF	ENST00000481516	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	MTERF	HGNC	ENSG00000127989				24	0	0	23	4	14.8148
VPS13B	0	genome.wustl.edu	37	8	100050671	100050671	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	100050671	100050671	T	-	DEL	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	frame_shift_del	c.168	p.L58fs	0.024	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				64	0	0	56	10	15.1515
RGS22	0	genome.wustl.edu	37	8	101075898	101075899	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	101075898	101075899	-	A	INS	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	frame_shift_ins	c.1098_1097	p.L366fs	0.000:0.000	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				58	0	0	83	14	14.433
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				109	0	0	102	40	28.169
COL14A1	0	genome.wustl.edu	37	8	121379470	121379471	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	121379470	121379471	-	C	INS	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	frame_shift_ins	c.5138_5139	p.G1716fs	1.000:0.886	NULL	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				58	0	0	64	9	12.3288
TATDN1	0	genome.wustl.edu	37	8	125531026	125531027	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	125531026	125531027	-	T	INS	TATDN1	ENST00000520938	human	ensembl	74_37	-1	known	frame_shift_ins	c.187_186	p.*62fs	0.019:0.004	NULL	NULL	-	no_errors	TATDN1	HGNC	ENSG00000147687				39	0	0	37	11	22.9167
PHF20L1	0	genome.wustl.edu	37	8	133836264	133836264	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	133836264	133836264	A	-	DEL	PHF20L1	ENST00000395386	human	ensembl	74_37	+1	putative	frame_shift_del	c.1595	p.V535fs	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292				66	0	0	75	19	20.2128
COL22A1	0	genome.wustl.edu	37	8	139737648	139737649	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	139737648	139737649	-	G	INS	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	frame_shift_ins	c.2175_2174	p.G726fs	0.994:1.000	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				107	0	0	137	10	6.80272
KCNK9	0	genome.wustl.edu	37	8	140630595	140630595	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	140630595	140630595	T	-	DEL	KCNK9	ENST00000303015	human	ensembl	74_37	-1	known	frame_shift_del	c.1031	p.N344fs	1.000	pirsf_2pore_dom_K_chnl_TASK,prints_KCNK9	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK9,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427				101	0	0	129	21	14
MAPK15	0	genome.wustl.edu	37	8	144804319	144804319	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	144804319	144804319	G	-	DEL	MAPK15	ENST00000338033	human	ensembl	74_37	+1	known	frame_shift_del	c.1533	p.G513fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK15	HGNC	ENSG00000181085				78	0	0	110	23	17.2932
VPS28	0	genome.wustl.edu	37	8	145652341	145652341	+	RNA	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	145652341	145652341	G	-	DEL	VPS28	ENST00000526734	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS28	HGNC	ENSG00000160948				33	0	0	36	8	18.1818
ZNF7	0	genome.wustl.edu	37	8	146066890	146066891	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	146066890	146066891	AC	-	DEL	ZNF7	ENST00000325241	human	ensembl	74_37	+1	known	frame_shift_del	c.398_399	p.D133fs	0.084:0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF7	HGNC	ENSG00000147789				184	0	0	192	41	17.5966
MTUS1	0	genome.wustl.edu	37	8	17504627	17504627	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	17504627	17504627	A	-	DEL	MTUS1	ENST00000518889	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MTUS1	HGNC	ENSG00000129422				16	0	0	17	10	37.037
PPP3CC	0	genome.wustl.edu	37	8	22332543	22332543	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	22332543	22332543	A	-	DEL	PPP3CC	ENST00000240139	human	ensembl	74_37	+1	known	frame_shift_del	c.126	p.N44fs	0.996	NULL	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CC	HGNC	ENSG00000120910				58	0	0	87	16	15.534
CHRNA2	0	genome.wustl.edu	37	8	27320855	27320855	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	27320855	27320855	C	-	DEL	CHRNA2	ENST00000407991	human	ensembl	74_37	-1	known	frame_shift_del	c.1105	p.A369fs	0.966	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA2	HGNC	ENSG00000120903				54	0	0	47	19	28.7879
ESCO2	0	genome.wustl.edu	37	8	27633919	27633919	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	27633919	27633919	A	-	DEL	ESCO2	ENST00000305188	human	ensembl	74_37	+1	known	frame_shift_del	c.94	p.K33fs	0.909	NULL	NULL	-	no_errors	ESCO2	HGNC	ENSG00000171320				18	0	0	22	4	15.3846
KIF13B	0	genome.wustl.edu	37	8	29046126	29046127	+	Splice_Site	INS	-	-	GA			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	29046126	29046127	-	GA	INS	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	splice_site_ins	c.224-3_224-2	e5-2	0.995:0.446	-	-	-	no_errors	KIF13B	HGNC	ENSG00000197892				30	0	0	24	7	22.5806
TEX15	0	genome.wustl.edu	37	8	30703516	30703516	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	30703516	30703516	T	-	DEL	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	frame_shift_del	c.3018	p.A1007fs	1.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				115	0	0	193	12	5.85366
GOT1L1	0	genome.wustl.edu	37	8	37791834	37791834	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	37791834	37791834	T	-	DEL	GOT1L1	ENST00000307599	human	ensembl	74_37	-1	known	frame_shift_del	c.1243	p.T415fs	0.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	-	no_errors	GOT1L1	HGNC	ENSG00000169154				100	0	0	108	30	21.7391
PRKDC	0	genome.wustl.edu	37	8	48746799	48746799	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	48746799	48746799	T	-	DEL	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_del	c.8107	p.R2703fs	0.739	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				393	1	0.253807	483	77	13.75
MCM4	0	genome.wustl.edu	37	8	48883979	48883979	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	48883979	48883979	A	-	DEL	MCM4	ENST00000262105	human	ensembl	74_37	+1	known	frame_shift_del	c.1879	p.T629fs	1.000	pfam_MCM_DNA-dep_ATPase,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738				89	0	0	72	16	18.1818
XKR4	0	genome.wustl.edu	37	8	56015076	56015076	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	56015076	56015076	A	-	DEL	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	frame_shift_del	c.28	p.M11fs	1.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				48	0	0	50	13	20.6349
CSPP1	0	genome.wustl.edu	37	8	68076631	68076631	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	68076631	68076631	A	-	DEL	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	frame_shift_del	c.2701	p.N903fs	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				49	0	0	56	7	11.1111
ARFGEF1	0	genome.wustl.edu	37	8	68128855	68128856	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	68128855	68128856	-	G	INS	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	frame_shift_ins	c.4656_4655	p.P1553fs	0.000:0.000	NULL	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				97	0	0	102	17	14.2857
ARFGEF1	0	genome.wustl.edu	37	8	68128856	68128856	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	68128856	68128856	G	-	DEL	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	frame_shift_del	c.4655	p.P1552fs	0.000	NULL	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				97	0	0	110	9	7.56303
KCNB2	0	genome.wustl.edu	37	8	73480092	73480092	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	73480092	73480092	G	-	DEL	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	frame_shift_del	c.123	p.G43fs	0.906	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				106	0	0	107	18	14.4
PI15	0	genome.wustl.edu	37	8	75756299	75756300	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	75756299	75756300	-	T	INS	PI15	ENST00000260113	human	ensembl	74_37	+1	known	frame_shift_ins	c.357_358	p.L120fs	1.000:1.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI15	HGNC	ENSG00000137558				233	0	0	312	19	5.74018
MMP16	0	genome.wustl.edu	37	8	89128859	89128860	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	89128859	89128860	-	T	INS	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	frame_shift_ins	c.960_959	p.N320fs	0.949:0.999	pirsf_Pept_M10A_Metazoans	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103				156	0	0	216	34	13.6
TMEM64	0	genome.wustl.edu	37	8	91643788	91643788	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	91643788	91643788	A	-	DEL	TMEM64	ENST00000458549	human	ensembl	74_37	-1	known	frame_shift_del	c.943	p.C315fs	1.000	NULL	pfam_SNARE_assoc	-	no_errors	TMEM64	HGNC	ENSG00000180694				133	0	0	139	16	10.3226
ESRP1	0	genome.wustl.edu	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	8	95686611	95686611	A	-	DEL	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	frame_shift_del	c.1528	p.N512fs	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				67	0	0	88	9	9.27835
PALM2-AKAP2	0	genome.wustl.edu	37	9	112900483	112900483	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	112900483	112900483	C	-	DEL	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	frame_shift_del	c.2659	p.Q889fs	0.001	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				19	0	0	13	6	31.5789
MIR4668	0	genome.wustl.edu	37	9	114694384	114694385	+	RNA	DEL	AA	AA	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	114694384	114694385	AA	-	DEL	MIR4668	ENST00000582284	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MIR4668	HGNC	ENSG00000266315				9	0	0	16	8	33.3333
ZFP37	0	genome.wustl.edu	37	9	115806416	115806416	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	115806416	115806416	T	-	DEL	ZFP37	ENST00000553380	human	ensembl	74_37	-1	known	frame_shift_del	c.527	p.N176fs	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866				48	0	0	61	14	18.6667
C9orf114	0	genome.wustl.edu	37	9	131591120	131591120	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	131591120	131591120	T	-	DEL	C9orf114	ENST00000361256	human	ensembl	74_37	-1	known	frame_shift_del	c.102	p.K34fs	0.998	NULL	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold	-	no_errors	C9orf114	HGNC	ENSG00000198917				89	0	0	98	29	22.8346
ABL1	0	genome.wustl.edu	37	9	133760613	133760613	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	133760613	133760613	C	-	DEL	ABL1	ENST00000372348	human	ensembl	74_37	+1	known	frame_shift_del	c.2993	p.V1000fs	0.001	pfam_F-actin_binding	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007				85	0	0	128	16	11.1111
TTF1	0	genome.wustl.edu	37	9	135277373	135277373	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	135277373	135277373	T	-	DEL	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	frame_shift_del	c.836	p.K279fs	0.003	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				91	0	0	164	9	5.20231
LINC00094	0	genome.wustl.edu	37	9	136899776	136899776	+	RNA	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	136899776	136899776	C	-	DEL	LINC00094	ENST00000605164	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00094	HGNC	ENSG00000235106				17	0	0	14	5	26.3158
UAP1L1	0	genome.wustl.edu	37	9	139975220	139975220	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	139975220	139975220	C	-	DEL	UAP1L1	ENST00000409858	human	ensembl	74_37	+1	known	frame_shift_del	c.1258	p.R421fs	0.999	pfam_UDPGP_trans	pfam_UDPGP_trans	-	no_errors	UAP1L1	HGNC	ENSG00000197355				90	0	0	116	25	17.7305
DPP7	0	genome.wustl.edu	37	9	140005118	140005118	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	140005118	140005118	C	-	DEL	DPP7	ENST00000371579	human	ensembl	74_37	-1	known	frame_shift_del	c.1461	p.R489fs	0.000	NULL	pfam_Peptidase_S28,pfam_AB_hydrolase_1	-	no_errors	DPP7	HGNC	ENSG00000176978				94	0	0	112	8	6.66667
NDOR1	0	genome.wustl.edu	37	9	140109259	140109259	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	140109259	140109259	C	-	DEL	NDOR1	ENST00000371521	human	ensembl	74_37	+1	known	frame_shift_del	c.854	p.T287fs	0.050	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NDOR1	HGNC	ENSG00000188566				141	0	0	171	25	12.7551
FREM1	0	genome.wustl.edu	37	9	14842654	14842654	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	14842654	14842654	C	-	DEL	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	frame_shift_del	c.1401	p.F470fs	0.953	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				81	0	0	118	10	7.8125
CNTLN	0	genome.wustl.edu	37	9	17135271	17135271	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	17135271	17135271	G	-	DEL	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	frame_shift_del	c.208	p.A72fs	0.002	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				12	0	0	15	4	21.0526
MLLT3	0	genome.wustl.edu	37	9	20622295	20622295	+	RNA	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	20622295	20622295	C	-	DEL	MLLT3	ENST00000475957	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843				29	0	0	32	4	11.1111
ENSG00000265194	0	genome.wustl.edu	37	9	21861903	21861903	+	RNA	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	21861903	21861903	T	-	DEL	ENSG00000265194	ENST00000581788	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-70L8.4	Clone_based_vega_gene	ENSG00000265194				17	0	0	16	15	48.3871
AQP3	0	genome.wustl.edu	37	9	33442228	33442229	+	RNA	DEL	AT	AT	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	33442228	33442229	AT	-	DEL	AQP3	ENST00000493581	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AQP3	HGNC	ENSG00000165272				61	0	0	46	11	19.2982
MELK	0	genome.wustl.edu	37	9	36630151	36630152	+	RNA	INS	-	-	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	36630151	36630152	-	T	INS	MELK	ENST00000480021	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MELK	HGNC	ENSG00000165304				29	0	0	22	8	26.6667
PTPRD	0	genome.wustl.edu	37	9	8499702	8499702	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	8499702	8499702	T	-	DEL	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	frame_shift_del	c.2267	p.N756fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				219	0	0	278	46	14.1975
NTRK2	0	genome.wustl.edu	37	9	87317265	87317266	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	9	87317265	87317266	-	A	INS	NTRK2	ENST00000277120	human	ensembl	74_37	+1	known	frame_shift_ins	c.290_291	p.I98fs	0.994:0.440	prints_Tyr_kinase_NGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053				153	0	0	211	14	6.22222
ZMAT1	0	genome.wustl.edu	37	X	101138439	101138439	+	RNA	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	101138439	101138439	T	-	DEL	ZMAT1	ENST00000494068	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZMAT1	HGNC	ENSG00000166432				12	0	0	12	18	60
MORF4L2	0	genome.wustl.edu	37	X	102931753	102931753	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	102931753	102931753	G	-	DEL	MORF4L2	ENST00000360458	human	ensembl	74_37	-1	known	frame_shift_del	c.203	p.P68fs	1.000	NULL	pfam_MRG_dom,superfamily_Chromodomain-like	-	no_errors	MORF4L2	HGNC	ENSG00000123562				51	0	0	49	7	12.5
CXorf57	0	genome.wustl.edu	37	X	105881026	105881027	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	105881026	105881027	-	A	INS	CXorf57	ENST00000372548	human	ensembl	74_37	+1	known	frame_shift_ins	c.1445_1446	p.N484fs	1.000:0.987	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CXorf57	HGNC	ENSG00000147231				98	0	0	91	23	20.1754
IRS4	0	genome.wustl.edu	37	X	107976243	107976244	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	107976243	107976244	TC	-	DEL	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	frame_shift_del	c.3332_3331	p.D1111fs	0.981:0.997	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				139	0	0	118	7	5.6
USP26	0	genome.wustl.edu	37	X	132160788	132160788	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	132160788	132160788	A	-	DEL	USP26	ENST00000370832	human	ensembl	74_37	-1	known	frame_shift_del	c.1461	p.F487fs	0.033	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				190	1	0.52356	153	55	26.4423
DDX26B	0	genome.wustl.edu	37	X	134680317	134680317	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	134680317	134680317	T	-	DEL	DDX26B	ENST00000370752	human	ensembl	74_37	+1	known	frame_shift_del	c.352	p.L120fs	1.000	pfscan_VWF_A	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359				68	0	0	43	6	12.2449
SRPK3	0	genome.wustl.edu	37	X	153048690	153048690	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	153048690	153048690	C	-	DEL	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	frame_shift_del	c.758	p.Q255fs	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343				51	0	0	33	11	25
MPP1	0	genome.wustl.edu	37	X	154007602	154007604	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	154007602	154007604	CTT	-	DEL	MPP1	ENST00000369534	human	ensembl	74_37	-1	known	in_frame_del	c.1251_1249	p.K417in_frame_del	1.000:1.000:1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP1	HGNC	ENSG00000130830				81	0	0	55	16	22.5352
NHS	0	genome.wustl.edu	37	X	17710497	17710497	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	17710497	17710497	C	-	DEL	NHS	ENST00000380060	human	ensembl	74_37	+1	known	frame_shift_del	c.761	p.L256fs	0.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				163	0	0	129	15	10.4167
DMD	0	genome.wustl.edu	37	X	33229458	33229458	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	33229458	33229458	A	-	DEL	DMD	ENST00000463609	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	DMD	HGNC	ENSG00000198947				24	0	0	30	6	16.6667
BCOR	0	genome.wustl.edu	37	X	39913253	39913253	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	39913253	39913253	G	-	DEL	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	frame_shift_del	c.4862	p.P1621fs	0.994	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				54	0	0	29	7	19.4444
BCOR	0	genome.wustl.edu	37	X	39932794	39932794	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	39932794	39932794	G	-	DEL	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	frame_shift_del	c.1805	p.P602fs	0.793	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				136	0	0	122	9	6.87023
MED14	0	genome.wustl.edu	37	X	40588606	40588606	+	RNA	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	40588606	40588606	A	-	DEL	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MED14	HGNC	ENSG00000180182				34	0	0	25	13	34.2105
MTMR8	0	genome.wustl.edu	37	X	63557257	63557257	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	63557257	63557257	T	-	DEL	MTMR8	ENST00000374852	human	ensembl	74_37	-1	known	frame_shift_del	c.992	p.K331fs	0.996	smart_Tyr_Pase_cat	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat	-	no_errors	MTMR8	HGNC	ENSG00000102043				48	0	0	23	5	17.8571
CDX4	0	genome.wustl.edu	37	X	72667321	72667321	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	72667321	72667321	C	-	DEL	CDX4	ENST00000373514	human	ensembl	74_37	+1	known	frame_shift_del	c.232	p.P79fs	0.999	pfam_Caudal_activation_dom	pfam_Caudal_activation_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX4	HGNC	ENSG00000131264				93	0	0	56	16	22.2222
ZNF711	0	genome.wustl.edu	37	X	84526621	84526621	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	X	84526621	84526621	A	-	DEL	ZNF711	ENST00000395402	human	ensembl	74_37	+1	known	frame_shift_del	c.2097	p.K701fs	0.506	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180				135	1	0.735294	126	35	21.7391
