Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PRMT6	0	genome.wustl.edu	37	1	107599821	107599821	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	107599821	107599821	C	A	SNP	PRMT6	ENST00000370078	human	ensembl	74_37	+1	known	missense	c.484	p.L162M	0.952	pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_mo5U34_MeTrfas-like	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_mo5U34_MeTrfas-like,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT6	HGNC	ENSG00000198890				110	0	0	117	11	8.59375
SV2A	0	genome.wustl.edu	37	1	149885086	149885086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	149885086	149885086	G	A	SNP	SV2A	ENST00000369146	human	ensembl	74_37	-1	known	missense	c.307	p.R103W	0.994	tigrfam_SV2	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2A	HGNC	ENSG00000159164				222	0	0	166	74	30.8333
HRNR	0	genome.wustl.edu	37	1	152193722	152193722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	152193722	152193722	C	T	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.383	p.S128N	0.056	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				121	1	0.819672	105	32	23.3577
SMG5	0	genome.wustl.edu	37	1	156236063	156236063	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	156236063	156236063	C	T	SNP	SMG5	ENST00000361813	human	ensembl	74_37	-1	known	missense	c.1364	p.R455H	1.000	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG5	HGNC	ENSG00000198952				115	0	0	94	37	28.2443
OR10J3	0	genome.wustl.edu	37	1	159283850	159283850	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	159283850	159283850	G	T	SNP	OR10J3	ENST00000332217	human	ensembl	74_37	-1	known	missense	c.600	p.N200K	0.818	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10J3	HGNC	ENSG00000196266				67	0	0	78	11	12.3596
DUSP27	0	genome.wustl.edu	37	1	167088640	167088640	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	167088640	167088640	G	T	SNP	DUSP27	ENST00000271385	human	ensembl	74_37	+1	known	missense	c.592	p.D198Y	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842				53	0	0	47	15	24.1935
KIFAP3	0	genome.wustl.edu	37	1	170007467	170007467	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	170007467	170007467	G	A	SNP	KIFAP3	ENST00000361580	human	ensembl	74_37	-1	known	nonsense	c.481	p.R161*	1.000	NULL	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	KIFAP3	HGNC	ENSG00000075945				81	0	0	72	18	20
ENSG00000226526	0	genome.wustl.edu	37	1	17331390	17331390	+	RNA	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	17331390	17331390	C	A	SNP	ENSG00000226526	ENST00000446261	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP1-37C10.3	Clone_based_vega_gene	ENSG00000226526				21	0	0	17	7	29.1667
SLC9C2	0	genome.wustl.edu	37	1	173550993	173550993	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	173550993	173550993	G	C	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	missense	c.795	p.F265L	0.997	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				40	0	0	38	6	13.6364
BRINP3	0	genome.wustl.edu	37	1	190067604	190067604	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	190067604	190067604	C	T	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	silent	c.1845	p.G615	0.926	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				339	0	0	312	76	19.5876
CHI3L1	0	genome.wustl.edu	37	1	203148899	203148899	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	203148899	203148899	A	G	SNP	CHI3L1	ENST00000255409	human	ensembl	74_37	-1	known	missense	c.1001	p.V334A	0.429	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048				79	0	0	86	8	8.51064
NFASC	0	genome.wustl.edu	37	1	204955199	204955199	+	Silent	SNP	T	T	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	204955199	204955199	T	C	SNP	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	silent	c.2748	p.D916	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				54	0	0	42	8	16
DISP1	0	genome.wustl.edu	37	1	223164006	223164006	+	Silent	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	223164006	223164006	G	A	SNP	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	silent	c.579	p.L193	1.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				125	0	0	160	12	6.97674
TP53BP2	0	genome.wustl.edu	37	1	223983962	223983962	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	223983962	223983962	T	C	SNP	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	missense	c.2279	p.Y760C	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514				97	0	0	75	43	36.4407
ACTN2	0	genome.wustl.edu	37	1	236911005	236911005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	236911005	236911005	G	A	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.1445	p.R482Q	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				32	0	0	35	11	23.913
OR2M7	0	genome.wustl.edu	37	1	248487101	248487101	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	248487101	248487101	A	G	SNP	OR2M7	ENST00000317965	human	ensembl	74_37	-1	known	missense	c.770	p.F257S	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M7	HGNC	ENSG00000177186				116	0	0	69	60	46.5116
ARID1A	0	genome.wustl.edu	37	1	27100377	27100377	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	27100377	27100377	A	C	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.4089	p.Q1363H	0.999	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				200	0	0	175	20	10.2564
OSCP1	0	genome.wustl.edu	37	1	36898072	36898072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	36898072	36898072	G	A	SNP	OSCP1	ENST00000235532	human	ensembl	74_37	-1	known	missense	c.386	p.S129F	1.000	pfam_OSCP1	pfam_OSCP1	-	no_errors	OSCP1	HGNC	ENSG00000116885				125	0	0	55	54	49.5413
PODN	0	genome.wustl.edu	37	1	53535676	53535676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	53535676	53535676	C	T	SNP	PODN	ENST00000312553	human	ensembl	74_37	+1	known	missense	c.293	p.P98L	0.799	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348				11	0	0	21	3	12.5
SGIP1	0	genome.wustl.edu	37	1	67195054	67195054	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	67195054	67195054	A	C	SNP	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	missense	c.1943	p.N648T	1.000	pfam_Muniscin_C-term_mu_dom	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				112	0	0	56	84	60
TTLL7	0	genome.wustl.edu	37	1	84373332	84373332	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	84373332	84373332	C	T	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	missense	c.1799	p.R600H	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				29	0	0	19	14	42.4242
AGRN	0	genome.wustl.edu	37	1	980791	980791	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	980791	980791	C	T	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	silent	c.2424	p.A808	0.791	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				26	0	0	26	10	27.7778
SMC3	0	genome.wustl.edu	37	10	112328746	112328746	+	Silent	SNP	C	C	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	10	112328746	112328746	C	G	SNP	SMC3	ENST00000361804	human	ensembl	74_37	+1	known	silent	c.66	p.P22	0.999	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055				61	0	0	87	15	14.7059
ADRB1	0	genome.wustl.edu	37	10	115804636	115804636	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	10	115804636	115804636	C	T	SNP	ADRB1	ENST00000369295	human	ensembl	74_37	+1	known	missense	c.745	p.R249C	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_ADR_fam,prints_5HT6_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB1_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_5HT6_rcpt	-	no_errors	ADRB1	HGNC	ENSG00000043591				45	0	0	60	7	10.4478
ABLIM1	0	genome.wustl.edu	37	10	116225532	116225532	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	10	116225532	116225532	T	C	SNP	ABLIM1	ENST00000277895	human	ensembl	74_37	-1	known	missense	c.1366	p.I456V	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM1	HGNC	ENSG00000099204				244	0	0	201	131	39.4578
KCNK18	0	genome.wustl.edu	37	10	118957007	118957007	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	10	118957007	118957007	T	G	SNP	KCNK18	ENST00000334549	human	ensembl	74_37	+1	known	missense	c.8	p.V3G	0.865	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795				62	0	0	85	13	13.2653
CUBN	0	genome.wustl.edu	37	10	17026238	17026238	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	10	17026238	17026238	T	C	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.4391	p.Q1464R	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				58	0	0	51	7	12.069
ANKRD30A	0	genome.wustl.edu	37	10	37505290	37505290	+	Silent	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	10	37505290	37505290	A	G	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	silent	c.2883	p.K961	0.146	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513				40	0	0	38	8	17.3913
C10orf71	0	genome.wustl.edu	37	10	50532585	50532585	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	10	50532585	50532585	C	T	SNP	C10orf71	ENST00000374144	human	ensembl	74_37	+1	known	silent	c.1995	p.T665	0.002	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354				33	0	0	37	4	9.7561
PDGFD	0	genome.wustl.edu	37	11	103870925	103870925	+	Silent	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	11	103870925	103870925	G	A	SNP	PDGFD	ENST00000393158	human	ensembl	74_37	-1	known	silent	c.183	p.N61	0.294	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_PDGF/VEGF_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFD	HGNC	ENSG00000170962				132	0	0	124	35	22.0126
NLRX1	0	genome.wustl.edu	37	11	119052817	119052817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	11	119052817	119052817	C	T	SNP	NLRX1	ENST00000292199	human	ensembl	74_37	+1	known	missense	c.2369	p.P790L	0.997	smart_Leu-rich_rpt_RNase_inh_sub-typ	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703				260	0	0	204	62	23.3083
ARHGEF12	0	genome.wustl.edu	37	11	120335951	120335951	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	11	120335951	120335951	C	T	SNP	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	silent	c.2562	p.S854	0.944	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914				74	0	0	74	11	12.9412
DCDC1	0	genome.wustl.edu	37	11	31115605	31115605	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	11	31115605	31115605	T	G	SNP	DCDC1	ENST00000597505	human	ensembl	74_37	-1	putative	missense	c.2110	p.I704L	0.999	superfamily_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Doublecortin_dom,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959				130	0	0	143	14	8.9172
ARFGAP2	0	genome.wustl.edu	37	11	47198097	47198097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	11	47198097	47198097	C	T	SNP	ARFGAP2	ENST00000524782	human	ensembl	74_37	-1	known	missense	c.161	p.R54H	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182				52	0	0	25	49	66.2162
NDUFS3	0	genome.wustl.edu	37	11	47602281	47602281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	11	47602281	47602281	C	T	SNP	NDUFS3	ENST00000534208	human	ensembl	74_37	+1	putative	missense	c.338	p.P113L	0.001	NULL	NULL	-	no_errors	NDUFS3	HGNC	ENSG00000213619				16	0	0	19	5	20.8333
OR51F2	0	genome.wustl.edu	37	11	4842656	4842656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	11	4842656	4842656	C	T	SNP	OR51F2	ENST00000322110	human	ensembl	74_37	+1	known	missense	c.41	p.S14L	0.290	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51F2	HGNC	ENSG00000176925				280	0	0	275	51	15.6442
OR8H2	0	genome.wustl.edu	37	11	55873412	55873412	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	11	55873412	55873412	A	C	SNP	OR8H2	ENST00000313503	human	ensembl	74_37	+1	known	missense	c.894	p.K298N	0.126	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767				99	0	0	95	23	19.4915
SLC22A25	0	genome.wustl.edu	37	11	62933530	62933530	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	11	62933530	62933530	A	G	SNP	SLC22A25	ENST00000306494	human	ensembl	74_37	-1	known	missense	c.1271	p.I424T	0.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A25	HGNC	ENSG00000196600				40	0	0	17	24	58.5366
TULP3	0	genome.wustl.edu	37	12	3040238	3040238	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	12	3040238	3040238	A	T	SNP	TULP3	ENST00000448120	human	ensembl	74_37	+1	known	missense	c.528	p.Q176H	0.000	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP3	HGNC	ENSG00000078246				112	0	0	67	26	27.957
ADAMTS20	0	genome.wustl.edu	37	12	43822058	43822058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	12	43822058	43822058	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.3931	p.G1311R	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				102	0	0	62	29	31.8681
IKZF4	0	genome.wustl.edu	37	12	56428541	56428541	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	12	56428541	56428541	T	C	SNP	IKZF4	ENST00000262032	human	ensembl	74_37	+1	known	missense	c.1184	p.L395P	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411				83	0	0	41	26	38.806
VWF	0	genome.wustl.edu	37	12	6161886	6161886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	12	6161886	6161886	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.2009	p.R670H	1.000	pirsf_VWF,pfam_TIL_dom,superfamily_TIL_dom	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				37	0	0	21	9	30
GRIP1	0	genome.wustl.edu	37	12	66742840	66742840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	12	66742840	66742840	C	T	SNP	GRIP1	ENST00000359742	human	ensembl	74_37	-1	known	missense	c.3346	p.G1116S	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974				212	0	0	153	18	10.5263
F7	0	genome.wustl.edu	37	13	113761182	113761182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	13	113761182	113761182	G	A	SNP	F7	ENST00000375581	human	ensembl	74_37	+1	known	missense	c.88	p.G30R	0.167	pirsf_Pept_S1A_FX	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F7	HGNC	ENSG00000057593				16	0	0	21	5	19.2308
XPO4	0	genome.wustl.edu	37	13	21357924	21357924	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	13	21357924	21357924	C	A	SNP	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	missense	c.3393	p.M1131I	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953				131	0	0	110	7	5.98291
OLFM4	0	genome.wustl.edu	37	13	53624159	53624159	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	13	53624159	53624159	C	T	SNP	OLFM4	ENST00000219022	human	ensembl	74_37	+1	known	silent	c.786	p.L262	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_Quinoprot_gluc/sorb_DH,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM4	HGNC	ENSG00000102837				100	0	0	194	29	13.0045
CYP46A1	0	genome.wustl.edu	37	14	100165870	100165870	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	14	100165870	100165870	G	C	SNP	CYP46A1	ENST00000261835	human	ensembl	74_37	+1	known	missense	c.350	p.G117A	0.982	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP46A1	HGNC	ENSG00000036530				207	0	0	141	12	7.84314
YY1	0	genome.wustl.edu	37	14	100743827	100743827	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	14	100743827	100743827	G	A	SNP	YY1	ENST00000262238	human	ensembl	74_37	+1	known	missense	c.1135	p.G379R	1.000	pirsf_TF_Yin_yang,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY1	HGNC	ENSG00000100811				88	0	0	56	10	15.1515
OR4M2	0	genome.wustl.edu	37	15	22369460	22369460	+	Silent	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	15	22369460	22369460	A	G	SNP	OR4M2	ENST00000332663	human	ensembl	74_37	+1	putative	silent	c.885	p.E295	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974				67	0	0	52	17	24.6377
NDN	0	genome.wustl.edu	37	15	23931667	23931667	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	15	23931667	23931667	T	G	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	missense	c.698	p.K233T	0.339	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636				49	0	0	29	6	17.1429
DUOX2	0	genome.wustl.edu	37	15	45386811	45386811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	15	45386811	45386811	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.4474	p.R1492C	1.000	pfam_Fe_red_NAD-bd_6	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				43	0	0	38	4	9.52381
DTWD1	0	genome.wustl.edu	37	15	49924413	49924413	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	15	49924413	49924413	G	T	SNP	DTWD1	ENST00000251250	human	ensembl	74_37	+1	known	missense	c.322	p.A108S	1.000	pfam_DTW	pfam_DTW	-	no_errors	DTWD1	HGNC	ENSG00000104047				58	0	0	51	10	16.3934
SEMA7A	0	genome.wustl.edu	37	15	74709712	74709712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	15	74709712	74709712	C	T	SNP	SEMA7A	ENST00000261918	human	ensembl	74_37	-1	known	missense	c.625	p.E209K	0.126	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA7A	HGNC	ENSG00000138623				196	0	0	170	40	19.0476
ABCC1	0	genome.wustl.edu	37	16	16225674	16225674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	16	16225674	16225674	C	T	SNP	ABCC1	ENST00000399408	human	ensembl	74_37	+1	known	missense	c.3878	p.P1293L	0.869	superfamily_P-loop_NTPase,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222				39	0	0	22	8	26.6667
IGFALS	0	genome.wustl.edu	37	16	1841399	1841399	+	Silent	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	16	1841399	1841399	A	G	SNP	IGFALS	ENST00000415638	human	ensembl	74_37	-1	known	silent	c.1134	p.L378	0.999	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	IGFALS	HGNC	ENSG00000099769				31	0	0	12	15	55.5556
SBK1	0	genome.wustl.edu	37	16	28330503	28330503	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	16	28330503	28330503	C	T	SNP	SBK1	ENST00000341901	human	ensembl	74_37	+1	known	silent	c.414	p.D138	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_Sbk1,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_Sbk1,pfscan_Prot_kinase_dom	-	no_errors	SBK1	HGNC	ENSG00000188322				65	0	0	32	10	23.8095
PKMYT1	0	genome.wustl.edu	37	16	3025809	3025809	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	16	3025809	3025809	C	T	SNP	PKMYT1	ENST00000262300	human	ensembl	74_37	-1	known	missense	c.383	p.R128H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr/Thr_kinase_Cdc2_inhib,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr/Thr_kinase_Cdc2_inhib,pfscan_Prot_kinase_dom	-	no_errors	PKMYT1	HGNC	ENSG00000127564				54	0	0	34	6	15
TANGO6	0	genome.wustl.edu	37	16	68961816	68961816	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	16	68961816	68961816	A	G	SNP	TANGO6	ENST00000261778	human	ensembl	74_37	+1	known	missense	c.2473	p.T825A	0.001	pfam_DUF2435,superfamily_ARM-type_fold	pfam_DUF2435,pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TANGO6	HGNC	ENSG00000103047				24	0	0	21	8	27.5862
ENSG00000226145	0	genome.wustl.edu	37	17	16722630	16722630	+	RNA	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	16722630	16722630	G	A	SNP	ENSG00000226145	ENST00000417510	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.625	-	-	-	no_errors	AC022596.6	Clone_based_vega_gene	ENSG00000226145				51	0	0	30	23	43.3962
MYO15A	0	genome.wustl.edu	37	17	18065937	18065937	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	18065937	18065937	T	G	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.9556	p.L3186V	0.003	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				43	0	0	12	20	62.5
SNORD3B-2	0	genome.wustl.edu	37	17	18967279	18967279	+	RNA	SNP	A	A	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	18967279	18967279	A	C	SNP	SNORD3B-2	ENST00000364880	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	SNORD3B-2	HGNC	ENSG00000262074				64	0	0	26	9	25.7143
NLK	0	genome.wustl.edu	37	17	26495496	26495496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	26495496	26495496	G	A	SNP	NLK	ENST00000407008	human	ensembl	74_37	+1	known	missense	c.860	p.R287K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NLK	HGNC	ENSG00000087095				174	0	0	216	56	20.5882
PIGS	0	genome.wustl.edu	37	17	26888484	26888484	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	26888484	26888484	T	G	SNP	PIGS	ENST00000308360	human	ensembl	74_37	-1	known	missense	c.632	p.D211A	1.000	pfam_PtdIno-glycan_biosynth_class_S	pfam_PtdIno-glycan_biosynth_class_S	-	no_errors	PIGS	HGNC	ENSG00000087111				44	0	0	41	21	33.871
NEK8	0	genome.wustl.edu	37	17	27064414	27064414	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	27064414	27064414	A	G	SNP	NEK8	ENST00000268766	human	ensembl	74_37	+1	known	missense	c.709	p.S237G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_RCC1/BLIP-II,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602				52	0	0	38	25	39.6825
PNMT	0	genome.wustl.edu	37	17	37826527	37826527	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	37826527	37826527	G	A	SNP	PNMT	ENST00000269582	human	ensembl	74_37	+1	known	missense	c.734	p.R245H	0.000	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	PNMT	HGNC	ENSG00000141744				19	0	0	70	14	16.6667
KRT13	0	genome.wustl.edu	37	17	39661551	39661551	+	Silent	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	39661551	39661551	A	G	SNP	KRT13	ENST00000246635	human	ensembl	74_37	-1	known	silent	c.252	p.G84	0.054	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401				25	0	0	47	17	26.5625
TTC25	0	genome.wustl.edu	37	17	40113416	40113416	+	RNA	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	40113416	40113416	A	G	SNP	TTC25	ENST00000377540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815				8	0	0	17	5	22.7273
MPP3	0	genome.wustl.edu	37	17	41886367	41886367	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	41886367	41886367	G	A	SNP	MPP3	ENST00000398389	human	ensembl	74_37	-1	known	missense	c.1538	p.T513M	0.885	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP3	HGNC	ENSG00000161647				47	0	0	36	17	32.0755
CSH1	0	genome.wustl.edu	37	17	61972707	61972707	+	Silent	SNP	T	T	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	61972707	61972707	T	G	SNP	CSH1	ENST00000329882	human	ensembl	74_37	-1	putative	silent	c.582	p.S194	0.110	NULL	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSH1	HGNC	ENSG00000136488				110	0	0	135	15	10
TP53	0	genome.wustl.edu	37	17	7577129	7577129	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	7577129	7577129	A	G	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.809	p.F270S	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				19	0	0	3	9	75
ENPP7	0	genome.wustl.edu	37	17	77708918	77708918	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	77708918	77708918	A	G	SNP	ENPP7	ENST00000328313	human	ensembl	74_37	+1	known	missense	c.476	p.K159R	0.980	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP7	HGNC	ENSG00000182156				89	0	0	69	4	5.47945
DLGAP1	0	genome.wustl.edu	37	18	3534395	3534395	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	18	3534395	3534395	G	A	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	missense	c.2276	p.T759M	0.667	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579				45	0	0	33	7	17.5
DCC	0	genome.wustl.edu	37	18	51013269	51013269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	18	51013269	51013269	G	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.3839	p.R1280Q	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				143	1	0.694444	98	56	36.3636
CDH7	0	genome.wustl.edu	37	18	63481815	63481815	+	Silent	SNP	G	G	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	18	63481815	63481815	G	T	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	silent	c.600	p.P200	0.009	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				96	0	0	72	41	36.2832
RDH8	0	genome.wustl.edu	37	19	10132337	10132337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	10132337	10132337	G	A	SNP	RDH8	ENST00000591589	human	ensembl	74_37	+1	known	missense	c.908	p.R303H	0.795	pirsf_17beta_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	RDH8	HGNC	ENSG00000080511				80	0	0	45	25	35.7143
ZNF443	0	genome.wustl.edu	37	19	12541141	12541141	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	12541141	12541141	C	T	SNP	ZNF443	ENST00000301547	human	ensembl	74_37	-1	known	silent	c.1845	p.P615	0.150	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF443	HGNC	ENSG00000180855				51	0	0	73	4	5.19481
CATSPERG	0	genome.wustl.edu	37	19	38851464	38851464	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	38851464	38851464	T	C	SNP	CATSPERG	ENST00000409235	human	ensembl	74_37	+1	known	missense	c.1861	p.Y621H	0.000	NULL	NULL	-	no_errors	CATSPERG	HGNC	ENSG00000099338				18	0	0	10	2	16.6667
ARHGEF1	0	genome.wustl.edu	37	19	42397364	42397364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	42397364	42397364	G	A	SNP	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	missense	c.679	p.E227K	0.989	pfam_RGS-like_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928				26	0	0	22	3	12
ZNF285	0	genome.wustl.edu	37	19	44891003	44891003	+	Silent	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	44891003	44891003	G	A	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	silent	c.1404	p.S468	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508				76	0	0	77	12	13.4831
ZNF285	0	genome.wustl.edu	37	19	44891010	44891010	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	44891010	44891010	G	C	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	missense	c.1397	p.A466G	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508				83	0	0	75	12	13.7931
ZNF285	0	genome.wustl.edu	37	19	44891043	44891043	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	44891043	44891043	G	T	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	missense	c.1364	p.P455Q	0.995	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508				76	0	0	81	13	13.8298
MYBPC2	0	genome.wustl.edu	37	19	50958492	50958492	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	50958492	50958492	C	T	SNP	MYBPC2	ENST00000357701	human	ensembl	74_37	+1	known	silent	c.2142	p.F714	0.947	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC2	HGNC	ENSG00000086967				170	0	0	34	73	68.2243
HAS1	0	genome.wustl.edu	37	19	52216712	52216712	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	52216712	52216712	G	A	SNP	HAS1	ENST00000601714	human	ensembl	74_37	-1	known	missense	c.1726	p.R576W	1.000	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509				21	0	0	3	10	76.9231
NLRP8	0	genome.wustl.edu	37	19	56490859	56490859	+	Silent	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	56490859	56490859	G	A	SNP	NLRP8	ENST00000291971	human	ensembl	74_37	+1	known	silent	c.2976	p.A992	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709				107	0	0	45	21	31.8182
GPR108	0	genome.wustl.edu	37	19	6735918	6735918	+	Splice_Site	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	6735918	6735918	C	A	SNP	GPR108	ENST00000264080	human	ensembl	74_37	-1	known	splice_site	c.291+1	e3+1	1.000	-	-	-	no_errors	GPR108	HGNC	ENSG00000125734				32	0	0	23	2	8
IL1R2	0	genome.wustl.edu	37	2	102626041	102626041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	102626041	102626041	C	T	SNP	IL1R2	ENST00000332549	human	ensembl	74_37	+1	known	missense	c.85	p.R29W	0.626	pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1R2	HGNC	ENSG00000115590				118	0	0	107	62	36.6864
SNTG2	0	genome.wustl.edu	37	2	1094065	1094065	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	1094065	1094065	C	T	SNP	SNTG2	ENST00000308624	human	ensembl	74_37	+1	known	silent	c.294	p.V98	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554				58	0	0	62	8	11.4286
GREB1	0	genome.wustl.edu	37	2	11755365	11755365	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	11755365	11755365	G	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.3271	p.A1091S	0.759	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				8	0	0	14	10	41.6667
ZEB2	0	genome.wustl.edu	37	2	145162441	145162441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	145162441	145162441	C	T	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.554	p.R185H	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				29	0	0	24	16	40
DDX1	0	genome.wustl.edu	37	2	15769793	15769793	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	15769793	15769793	G	T	SNP	DDX1	ENST00000233084	human	ensembl	74_37	+1	known	missense	c.1943	p.G648V	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_ConA-like_lec_gl_sf,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,smart_Helicase_C,pfscan_B30.2/SPRY,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX1	HGNC	ENSG00000079785				33	0	0	59	6	9.23077
SCN1A	0	genome.wustl.edu	37	2	166854619	166854619	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	166854619	166854619	A	G	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.4405	p.F1469L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				50	0	0	61	36	37.1134
G6PC2	0	genome.wustl.edu	37	2	169761040	169761040	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	169761040	169761040	C	T	SNP	G6PC2	ENST00000282075	human	ensembl	74_37	+1	known	missense	c.244	p.R82C	0.934	NULL	NULL	-	no_errors	G6PC2	HGNC	ENSG00000152254				308	0	0	353	67	15.9524
TTN	0	genome.wustl.edu	37	2	179469967	179469967	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	179469967	179469967	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.46233	p.K15411N	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				9	0	0	13	5	27.7778
DNAH7	0	genome.wustl.edu	37	2	196852950	196852950	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	196852950	196852950	T	G	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.1357	p.S453R	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				43	0	0	28	36	56.25
SPATS2L	0	genome.wustl.edu	37	2	201337696	201337696	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	201337696	201337696	A	C	SNP	SPATS2L	ENST00000409755	human	ensembl	74_37	+1	known	missense	c.1292	p.K431T	1.000	NULL	pfam_DUF1387,superfamily_UBA-like	-	no_errors	SPATS2L	HGNC	ENSG00000196141				39	0	0	41	14	25.4545
ADAM23	0	genome.wustl.edu	37	2	207431960	207431960	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	207431960	207431960	C	T	SNP	ADAM23	ENST00000264377	human	ensembl	74_37	+1	known	nonsense	c.1408	p.R470*	0.912	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948				72	0	0	59	44	42.7184
SPAG16	0	genome.wustl.edu	37	2	214215281	214215281	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	214215281	214215281	C	A	SNP	SPAG16	ENST00000331683	human	ensembl	74_37	+1	known	missense	c.674	p.P225Q	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451				55	0	0	74	8	9.7561
TRPM8	0	genome.wustl.edu	37	2	234869689	234869689	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	234869689	234869689	C	T	SNP	TRPM8	ENST00000324695	human	ensembl	74_37	+1	known	silent	c.1632	p.D544	0.004	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481				40	0	0	56	3	5.08475
COL6A3	0	genome.wustl.edu	37	2	238303419	238303419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	238303419	238303419	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.520	p.A174T	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				77	0	0	133	10	6.99301
FBXO11	0	genome.wustl.edu	37	2	48035360	48035360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	48035360	48035360	G	A	SNP	FBXO11	ENST00000403359	human	ensembl	74_37	-1	known	missense	c.2681	p.T894I	1.000	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	pfam_Znf_N-recognin,pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081				63	0	0	79	41	34.1667
SPTLC3	0	genome.wustl.edu	37	20	13140725	13140725	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	20	13140725	13140725	A	C	SNP	SPTLC3	ENST00000399002	human	ensembl	74_37	+1	known	missense	c.1491	p.E497D	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SPTLC3	HGNC	ENSG00000172296				60	0	0	111	66	37.2881
PLK1S1	0	genome.wustl.edu	37	20	21227216	21227216	+	RNA	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	20	21227216	21227216	G	A	SNP	PLK1S1	ENST00000246027	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLK1S1	HGNC	ENSG00000088970				25	0	0	60	5	7.69231
CPXM1	0	genome.wustl.edu	37	20	2779456	2779456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	20	2779456	2779456	G	A	SNP	CPXM1	ENST00000380605	human	ensembl	74_37	-1	known	missense	c.256	p.R86C	0.002	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM1	HGNC	ENSG00000088882				124	0	0	207	17	7.58929
PLAGL2	0	genome.wustl.edu	37	20	30785006	30785006	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	20	30785006	30785006	A	C	SNP	PLAGL2	ENST00000246229	human	ensembl	74_37	-1	known	missense	c.740	p.L247R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL2	HGNC	ENSG00000126003				29	0	0	47	24	33.8028
CSE1L	0	genome.wustl.edu	37	20	47682762	47682762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	20	47682762	47682762	G	A	SNP	CSE1L	ENST00000262982	human	ensembl	74_37	+1	known	missense	c.262	p.D88N	1.000	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	pfam_CAS_CSE1_C,pfam_Cse1,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	CSE1L	HGNC	ENSG00000124207				56	0	0	120	7	5.51181
MCM3AP	0	genome.wustl.edu	37	21	47695170	47695170	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	21	47695170	47695170	T	G	SNP	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	missense	c.1928	p.E643A	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				33	0	0	23	4	14.8148
ZNF74	0	genome.wustl.edu	37	22	20760724	20760724	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	22	20760724	20760724	C	T	SNP	ZNF74	ENST00000356671	human	ensembl	74_37	+1	known	silent	c.1401	p.S467	0.951	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252				65	0	0	29	3	9.375
SCARF2	0	genome.wustl.edu	37	22	20780319	20780319	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	22	20780319	20780319	C	T	SNP	SCARF2	ENST00000405555	human	ensembl	74_37	-1	known	silent	c.1944	p.S648	0.989	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF2	HGNC	ENSG00000244486				26	0	0	13	3	18.75
LZTR1	0	genome.wustl.edu	37	22	21344890	21344890	+	RNA	SNP	T	T	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	22	21344890	21344890	T	C	SNP	LZTR1	ENST00000497716	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LZTR1	HGNC	ENSG00000099949				18	0	0	14	16	53.3333
SMTN	0	genome.wustl.edu	37	22	31486955	31486955	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	22	31486955	31486955	C	A	SNP	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	missense	c.946	p.P316T	0.538	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				111	0	0	30	38	55.8824
ATP2B2	0	genome.wustl.edu	37	3	10430051	10430051	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	3	10430051	10430051	C	T	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	missense	c.817	p.V273M	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				200	0	0	107	61	36.3095
LSAMP	0	genome.wustl.edu	37	3	115805190	115805190	+	Silent	SNP	T	T	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	3	115805190	115805190	T	C	SNP	LSAMP	ENST00000490035	human	ensembl	74_37	-1	known	silent	c.369	p.Q123	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LSAMP	HGNC	ENSG00000185565				31	0	0	23	8	25.8065
MSL2	0	genome.wustl.edu	37	3	135870710	135870710	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	3	135870710	135870710	A	G	SNP	MSL2	ENST00000309993	human	ensembl	74_37	-1	known	missense	c.1013	p.L338S	0.969	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579				70	0	0	36	30	45.4545
MECOM	0	genome.wustl.edu	37	3	168845679	168845679	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	3	168845679	168845679	C	T	SNP	MECOM	ENST00000494292	human	ensembl	74_37	-1	known	silent	c.783	p.T261	0.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276				188	0	0	129	74	36.4532
TRANK1	0	genome.wustl.edu	37	3	36874650	36874650	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	3	36874650	36874650	A	C	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.6292	p.F2098V	0.915	NULL	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				16	0	0	6	7	53.8462
CENPE	0	genome.wustl.edu	37	4	104065732	104065732	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	104065732	104065732	G	A	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.4901	p.T1634I	0.001	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				27	0	0	29	11	27.5
INTS12	0	genome.wustl.edu	37	4	106614632	106614632	+	Silent	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	106614632	106614632	G	A	SNP	INTS12	ENST00000340139	human	ensembl	74_37	-1	known	silent	c.321	p.D107	0.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785				91	0	0	84	6	6.66667
CFI	0	genome.wustl.edu	37	4	110681428	110681428	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	110681428	110681428	G	A	SNP	CFI	ENST00000394634	human	ensembl	74_37	-1	known	missense	c.881	p.A294V	0.711	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_FacI_MAC,smart_Srcr_rcpt-rel,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	CFI	HGNC	ENSG00000205403				93	0	0	47	24	33.8028
PITX2	0	genome.wustl.edu	37	4	111539783	111539783	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	111539783	111539783	A	T	SNP	PITX2	ENST00000306732	human	ensembl	74_37	-1	known	missense	c.473	p.L158Q	1.000	superfamily_Homeodomain-like,pirsf_Homeobox_Pitx/unc30	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PITX2	HGNC	ENSG00000164093				131	0	0	66	15	18.5185
PCDH18	0	genome.wustl.edu	37	4	138451501	138451501	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	138451501	138451501	A	C	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	missense	c.1742	p.L581W	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				177	0	0	112	36	24.3243
FSTL5	0	genome.wustl.edu	37	4	162459350	162459350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	162459350	162459350	G	A	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.1280	p.S427F	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				155	0	0	96	177	64.8352
ENSG00000248138	0	genome.wustl.edu	37	4	16513597	16513597	+	RNA	SNP	G	G	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	16513597	16513597	G	T	SNP	ENSG00000248138	ENST00000512370	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-446J8.1	Clone_based_vega_gene	ENSG00000248138				90	0	0	78	13	14.2857
IRF2	0	genome.wustl.edu	37	4	185340650	185340650	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	185340650	185340650	G	C	SNP	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	missense	c.160	p.L54V	0.993	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				128	0	0	55	25	31.25
RBM47	0	genome.wustl.edu	37	4	40440609	40440609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	40440609	40440609	C	T	SNP	RBM47	ENST00000295971	human	ensembl	74_37	-1	known	missense	c.302	p.R101H	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694				81	0	0	56	17	23.2877
ATP10D	0	genome.wustl.edu	37	4	47514786	47514786	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	47514786	47514786	C	T	SNP	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	nonsense	c.229	p.R77*	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				77	0	0	53	9	14.5161
NFXL1	0	genome.wustl.edu	37	4	47877167	47877167	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	47877167	47877167	G	C	SNP	NFXL1	ENST00000381538	human	ensembl	74_37	-1	known	missense	c.2223	p.I741M	1.000	NULL	pfam_Znf_NFX1,smart_Znf_NFX1,pfscan_Znf_RING	-	no_errors	NFXL1	HGNC	ENSG00000170448				88	0	0	45	16	26.2295
CNGA1	0	genome.wustl.edu	37	4	47938591	47938591	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	47938591	47938591	C	A	SNP	CNGA1	ENST00000402813	human	ensembl	74_37	-1	known	missense	c.2127	p.R709S	0.289	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515				101	0	0	69	31	31
CRMP1	0	genome.wustl.edu	37	4	5827283	5827283	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	5827283	5827283	G	A	SNP	CRMP1	ENST00000324989	human	ensembl	74_37	-1	known	missense	c.1907	p.S636L	1.000	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832				61	0	0	43	19	30.6452
JAKMIP1	0	genome.wustl.edu	37	4	6055827	6055827	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	6055827	6055827	C	A	SNP	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	missense	c.1756	p.D586Y	1.000	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				206	0	0	110	14	11.2903
CABS1	0	genome.wustl.edu	37	4	71200978	71200978	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	4	71200978	71200978	A	C	SNP	CABS1	ENST00000273936	human	ensembl	74_37	+1	known	missense	c.222	p.K74N	0.121	NULL	NULL	-	no_errors	CABS1	HGNC	ENSG00000145309				56	0	0	20	19	48.7179
ROPN1L	0	genome.wustl.edu	37	5	10450088	10450088	+	Silent	SNP	T	T	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	5	10450088	10450088	T	C	SNP	ROPN1L	ENST00000274134	human	ensembl	74_37	+1	known	silent	c.280	p.L94	0.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1L	HGNC	ENSG00000145491				78	0	0	107	9	7.75862
PCDHB8	0	genome.wustl.edu	37	5	140559226	140559226	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	5	140559226	140559226	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	silent	c.1611	p.R537	0.004	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				255	0	0	253	14	5.24345
CSNK1A1	0	genome.wustl.edu	37	5	148891431	148891431	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	5	148891431	148891431	G	A	SNP	CSNK1A1	ENST00000515768	human	ensembl	74_37	-1	known	nonsense	c.685	p.R229*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1A1	HGNC	ENSG00000113712				84	0	0	21	60	74.0741
SDHA	0	genome.wustl.edu	37	5	256624	256624	+	RNA	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	5	256624	256624	G	A	SNP	SDHA	ENST00000507522	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SDHA	HGNC	ENSG00000073578				12	0	0	16	4	20
IRX2	0	genome.wustl.edu	37	5	2749523	2749523	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	5	2749523	2749523	C	T	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	missense	c.628	p.G210S	0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				33	0	0	38	5	11.6279
PDZD2	0	genome.wustl.edu	37	5	32000337	32000337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	5	32000337	32000337	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.1214	p.R405H	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				123	0	0	155	47	23.2673
KIAA0947	0	genome.wustl.edu	37	5	5457596	5457596	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	5	5457596	5457596	T	G	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	missense	c.843	p.N281K	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				25	0	0	32	12	27.2727
RFX6	0	genome.wustl.edu	37	6	117239221	117239221	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	6	117239221	117239221	C	A	SNP	RFX6	ENST00000332958	human	ensembl	74_37	+1	known	missense	c.994	p.P332T	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002				116	0	0	176	11	5.88235
SOGA3	0	genome.wustl.edu	37	6	127836053	127836053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	6	127836053	127836053	C	T	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.1241	p.R414H	1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				113	0	0	106	54	33.75
SYNE1	0	genome.wustl.edu	37	6	152671444	152671444	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	6	152671444	152671444	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.11760	p.K3920N	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				61	0	0	70	25	26.3158
IGF2R	0	genome.wustl.edu	37	6	160506142	160506142	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	6	160506142	160506142	A	G	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.6184	p.T2062A	1.000	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				26	0	0	18	2	10
LPAL2	0	genome.wustl.edu	37	6	160888696	160888696	+	RNA	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	6	160888696	160888696	A	G	SNP	LPAL2	ENST00000335388	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	LPAL2	HGNC	ENSG00000213071				51	0	0	52	3	5.45455
TNXB	0	genome.wustl.edu	37	6	32032628	32032628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	6	32032628	32032628	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.6811	p.V2271M	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				89	0	0	45	33	42.3077
RELN	0	genome.wustl.edu	37	7	103131143	103131143	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	7	103131143	103131143	T	C	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.9577	p.I3193V	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				100	0	0	130	57	30.4813
OR9A2	0	genome.wustl.edu	37	7	142723590	142723590	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	7	142723590	142723590	C	T	SNP	OR9A2	ENST00000350513	human	ensembl	74_37	-1	known	silent	c.630	p.T210	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9A2	HGNC	ENSG00000179468				83	0	0	97	45	31.6901
HOXA4	0	genome.wustl.edu	37	7	27169073	27169073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	7	27169073	27169073	C	T	SNP	HOXA4	ENST00000360046	human	ensembl	74_37	-1	known	missense	c.734	p.R245H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA4	HGNC	ENSG00000197576				100	0	0	134	25	15.7233
GHRHR	0	genome.wustl.edu	37	7	31011683	31011683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	7	31011683	31011683	C	T	SNP	GHRHR	ENST00000409316	human	ensembl	74_37	+1	putative	missense	c.23	p.T8M	0.000	NULL	NULL	-	no_errors	GHRHR	HGNC	ENSG00000106128				56	0	0	89	6	6.31579
SDK1	0	genome.wustl.edu	37	7	4116774	4116774	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	7	4116774	4116774	G	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.3155	p.G1052V	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				63	0	0	77	10	11.4943
GLI3	0	genome.wustl.edu	37	7	42006103	42006103	+	Silent	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	7	42006103	42006103	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.2568	p.S856	0.008	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				31	0	0	42	13	23.6364
EGFR	0	genome.wustl.edu	37	7	55232990	55232990	+	Silent	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	7	55232990	55232990	C	A	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	silent	c.1740	p.I580	0.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				90	0	0	137	27	16.4634
POM121C	0	genome.wustl.edu	37	7	75068500	75068500	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	7	75068500	75068500	C	A	SNP	POM121C	ENST00000257665	human	ensembl	74_37	-1	known	missense	c.956	p.R319L	1.000	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213				246	0	0	266	91	25.4902
RIMS2	0	genome.wustl.edu	37	8	104922687	104922687	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	8	104922687	104922687	A	G	SNP	RIMS2	ENST00000262231	human	ensembl	74_37	+1	known	missense	c.1187	p.Q396R	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	RIMS2	HGNC	ENSG00000176406				43	0	0	82	33	28.6957
CA3	0	genome.wustl.edu	37	8	86352125	86352125	+	Silent	SNP	T	T	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	8	86352125	86352125	T	G	SNP	CA3	ENST00000285381	human	ensembl	74_37	+1	known	silent	c.219	p.T73	0.045	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA3	HGNC	ENSG00000164879				85	0	0	48	87	64.4444
OSGIN2	0	genome.wustl.edu	37	8	90937164	90937164	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	8	90937164	90937164	G	A	SNP	OSGIN2	ENST00000451899	human	ensembl	74_37	+1	known	missense	c.1054	p.G352S	1.000	NULL	NULL	-	no_errors	OSGIN2	HGNC	ENSG00000164823				112	0	0	225	36	13.7931
SVEP1	0	genome.wustl.edu	37	9	113192672	113192672	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	9	113192672	113192672	A	C	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.5412	p.I1804M	0.319	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				27	0	0	28	10	26.3158
AKNA	0	genome.wustl.edu	37	9	117143453	117143453	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	9	117143453	117143453	T	C	SNP	AKNA	ENST00000307564	human	ensembl	74_37	-1	known	missense	c.161	p.E54G	0.997	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948				34	0	0	37	14	27.451
OR1L1	0	genome.wustl.edu	37	9	125423911	125423911	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	9	125423911	125423911	A	G	SNP	OR1L1	ENST00000373686	human	ensembl	74_37	+1	known	missense	c.67	p.K23E	0.048	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L1	HGNC	ENSG00000173679				38	0	0	41	10	19.6078
GARNL3	0	genome.wustl.edu	37	9	130005495	130005495	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	9	130005495	130005495	C	T	SNP	GARNL3	ENST00000429629	human	ensembl	74_37	+1	known	missense	c.110	p.T37M	0.397	NULL	NULL	-	no_errors	GARNL3	HGNC	ENSG00000136895				39	0	0	36	17	32.0755
C9orf171	0	genome.wustl.edu	37	9	135374980	135374980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	9	135374980	135374980	C	T	SNP	C9orf171	ENST00000343036	human	ensembl	74_37	+1	known	missense	c.625	p.R209W	0.558	NULL	NULL	-	no_errors	C9orf171	HGNC	ENSG00000188523				50	0	0	37	44	54.321
MID2	0	genome.wustl.edu	37	X	107084451	107084451	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	X	107084451	107084451	C	T	SNP	MID2	ENST00000262843	human	ensembl	74_37	+1	known	missense	c.556	p.P186S	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID2	HGNC	ENSG00000080561				45	0	0	38	18	32.1429
DCAF12L1	0	genome.wustl.edu	37	X	125685821	125685821	+	Silent	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	X	125685821	125685821	G	A	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	silent	c.771	p.I257	0.398	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889				24	0	0	15	12	44.4444
USP26	0	genome.wustl.edu	37	X	132160682	132160682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	X	132160682	132160682	G	A	SNP	USP26	ENST00000370832	human	ensembl	74_37	-1	known	missense	c.1567	p.R523C	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				101	0	0	21	103	83.0645
SLITRK4	0	genome.wustl.edu	37	X	142718111	142718111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	X	142718111	142718111	C	T	SNP	SLITRK4	ENST00000338017	human	ensembl	74_37	-1	known	missense	c.814	p.V272M	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542				51	0	0	39	28	41.791
ATP2B3	0	genome.wustl.edu	37	X	152821535	152821535	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	X	152821535	152821535	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.2087	p.R696H	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				118	0	0	75	67	47.1831
MED12	0	genome.wustl.edu	37	X	70341241	70341241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	X	70341241	70341241	C	T	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	missense	c.800	p.P267L	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				83	0	0	91	9	9
FAM9A	0	genome.wustl.edu	37	X	8761697	8761697	+	Splice_Site	SNP	A	A	G			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	X	8761697	8761697	A	G	SNP	FAM9A	ENST00000381003	human	ensembl	74_37	-1	known	splice_site	c.930+2	e7+2	0.130	-	-	-	no_errors	FAM9A	HGNC	ENSG00000183304				26	0	0	5	25	83.3333
ESPNP	0	genome.wustl.edu	37	1	17034125	17034126	+	RNA	INS	-	-	AGCT			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	17034125	17034126	-	AGCT	INS	ESPNP	ENST00000492551	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	ESPNP	HGNC	ENSG00000268869				16	0	0	12	3	20
PLEKHA6	0	genome.wustl.edu	37	1	204219673	204219673	+	Splice_Site	DEL	C	C	-			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	1	204219673	204219673	C	-	DEL	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	splice_site_del	c.1593+1	e8+1	1.000	-	-	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				45	0	0	29	20	40.8163
SMARCC2	0	genome.wustl.edu	37	12	56558379	56558381	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	12	56558379	56558381	AGG	-	DEL	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	in_frame_del	c.3276_3274	p.P1092in_frame_del	1.000:1.000:1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				49	0	0	35	5	12.5
LRRC10	0	genome.wustl.edu	37	12	70004268	70004268	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	12	70004268	70004268	C	-	DEL	LRRC10	ENST00000361484	human	ensembl	74_37	-1	known	frame_shift_del	c.351	p.S118fs	0.949	pfam_Leu-rich_rpt	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC10	HGNC	ENSG00000198812				81	0	0	45	19	29.6875
MMP15	0	genome.wustl.edu	37	16	58079237	58079239	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	16	58079237	58079239	CTG	-	DEL	MMP15	ENST00000219271	human	ensembl	74_37	+1	known	in_frame_del	c.1897_1899	p.L636in_frame_del	0.233:0.949:0.965	pfam_Pept_M10A_metallopeptidase_C	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP15	HGNC	ENSG00000102996				31	0	0	17	2	10.5263
FMNL1	0	genome.wustl.edu	37	17	43318901	43318901	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	17	43318901	43318901	G	-	DEL	FMNL1	ENST00000328118	human	ensembl	74_37	+1	known	frame_shift_del	c.1485	p.D497fs	0.189	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL1	HGNC	ENSG00000184922				12	0	0	7	2	22.2222
PTH2	0	genome.wustl.edu	37	19	49926531	49926533	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	19	49926531	49926533	CAG	-	DEL	PTH2	ENST00000270631	human	ensembl	74_37	-1	known	in_frame_del	c.66_64	p.L22in_frame_del	0.016:0.132:0.132	NULL	NULL	-	no_errors	PTH2	HGNC	ENSG00000142538				41	0	0	14	2	12.5
ALPP	0	genome.wustl.edu	37	2	233243529	233243531	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	2	233243529	233243531	TGC	-	DEL	ALPP	ENST00000392027	human	ensembl	74_37	+1	known	in_frame_del	c.17_19	p.L10in_frame_del	0.645:0.641:0.627	NULL	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283				100	0	0	152	8	5
RBM12	0	genome.wustl.edu	37	20	34242522	34242539	+	In_Frame_Del	DEL	CATGGGTGGCAGTGGGGT	CATGGGTGGCAGTGGGGT	-			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	CATGGGTGGCAGTGGGGT	CATGGGTGGCAGTGGGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	20	34242522	34242539	CATGGGTGGCAGTGGGGT	-	DEL	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	in_frame_del	c.723_706	p.TPLPPM236in_frame_del	1.000:1.000:0.932:0.858:1.000:1.000:1.000:1.000:1.000:0.987:0.985:0.332:0.332:0.989:0.997:0.992:1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462				112	0	0	259	14	5.12821
GTSF1L	0	genome.wustl.edu	37	20	42355141	42355141	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7715-01A-11D-2053-08	TCGA-BR-7715-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	89cb9b02-63ad-44b5-8412-acd337f8263c	11a02247-a591-4d9d-8ae6-614d7e946a6f	20	42355141	42355141	T	-	DEL	GTSF1L	ENST00000373003	human	ensembl	74_37	-1	known	frame_shift_del	c.194	p.N65fs	1.000	NULL	pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	GTSF1L	HGNC	ENSG00000124196				78	0	0	123	24	16.3265
