Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SORT1	0	genome.wustl.edu	37	1	109883434	109883434	+	Silent	SNP	T	T	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	109883434	109883434	T	C	SNP	SORT1	ENST00000256637	human	ensembl	74_37	-1	known	silent	c.1176	p.R392	0.998	smart_VPS10	pfam_BNR_rpt,smart_VPS10	-	no_errors	SORT1	HGNC	ENSG00000134243				58	0	0	50	5	9.09091
KCND3	0	genome.wustl.edu	37	1	112524597	112524597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	112524597	112524597	C	T	SNP	KCND3	ENST00000315987	human	ensembl	74_37	-1	known	missense	c.752	p.R251H	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385				48	0	0	46	7	13.2075
PDE4DIP	0	genome.wustl.edu	37	1	144855852	144855852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	144855852	144855852	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.6701	p.R2234Q	0.686	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				58	0	0	43	5	10.4167
SPRR1B	0	genome.wustl.edu	37	1	153004879	153004879	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	153004879	153004879	C	T	SNP	SPRR1B	ENST00000307098	human	ensembl	74_37	+1	known	nonsense	c.58	p.Q20*	0.998	pfam_Cornifin	pfam_Cornifin	-	no_errors	SPRR1B	HGNC	ENSG00000169469				195	0	0	182	30	14.1509
BCAN	0	genome.wustl.edu	37	1	156617863	156617863	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	156617863	156617863	G	T	SNP	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	missense	c.730	p.D244Y	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				152	1	0.653595	137	15	9.86842
SPTA1	0	genome.wustl.edu	37	1	158596641	158596641	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	158596641	158596641	C	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	nonsense	c.5821	p.E1941*	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				95	0	0	102	9	8.10811
VSIG8	0	genome.wustl.edu	37	1	159828666	159828666	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	159828666	159828666	T	C	SNP	VSIG8	ENST00000368100	human	ensembl	74_37	-1	known	missense	c.86	p.Q29R	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	VSIG8	HGNC	ENSG00000243284				58	0	0	51	7	12.069
ADAMTS4	0	genome.wustl.edu	37	1	161165406	161165406	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	161165406	161165406	G	A	SNP	ADAMTS4	ENST00000367996	human	ensembl	74_37	-1	known	silent	c.1110	p.L370	0.879	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS4	HGNC	ENSG00000158859				107	0	0	92	12	11.5385
STX6	0	genome.wustl.edu	37	1	180959171	180959171	+	Silent	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	180959171	180959171	C	T	SNP	STX6	ENST00000258301	human	ensembl	74_37	-1	known	silent	c.438	p.E146	1.000	NULL	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX6	HGNC	ENSG00000135823				78	0	0	74	8	9.7561
KDM5B	0	genome.wustl.edu	37	1	202733219	202733219	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	202733219	202733219	G	C	SNP	KDM5B	ENST00000367264	human	ensembl	74_37	-1	known	missense	c.874	p.L292V	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139				47	0	0	43	4	8.51064
USH2A	0	genome.wustl.edu	37	1	215799151	215799151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	215799151	215799151	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.15653	p.R5218H	1.000	NULL	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				78	0	0	78	13	14.2857
USH2A	0	genome.wustl.edu	37	1	215821986	215821986	+	Silent	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	215821986	215821986	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.14466	p.L4822	0.849	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				47	0	0	46	9	16.3636
EPHA8	0	genome.wustl.edu	37	1	22903373	22903373	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	22903373	22903373	G	C	SNP	EPHA8	ENST00000166244	human	ensembl	74_37	+1	known	missense	c.823	p.A275P	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886				29	0	0	19	4	17.3913
OR2AK2	0	genome.wustl.edu	37	1	248129528	248129528	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	248129528	248129528	C	G	SNP	OR2AK2	ENST00000366480	human	ensembl	74_37	+1	known	missense	c.895	p.L299V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AK2	HGNC	ENSG00000187080				58	0	0	70	7	9.09091
MACF1	0	genome.wustl.edu	37	1	39753193	39753193	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	39753193	39753193	C	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	nonsense	c.1759	p.R587*	1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				156	0	0	138	23	14.2857
MACF1	0	genome.wustl.edu	37	1	39788669	39788669	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	39788669	39788669	G	C	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.4240	p.E1414Q	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				107	0	0	106	13	10.9244
PPT1	0	genome.wustl.edu	37	1	40558102	40558102	+	Silent	SNP	A	A	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	40558102	40558102	A	G	SNP	PPT1	ENST00000433473	human	ensembl	74_37	-1	known	silent	c.202	p.L68	0.999	pfam_Palm_thioest,prints_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT1	HGNC	ENSG00000131238				122	0	0	79	13	14.1304
SLFNL1	0	genome.wustl.edu	37	1	41485930	41485930	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	41485930	41485930	T	G	SNP	SLFNL1	ENST00000302946	human	ensembl	74_37	-1	known	missense	c.403	p.S135R	0.949	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFNL1	HGNC	ENSG00000171790				63	0	0	56	5	8.19672
USP24	0	genome.wustl.edu	37	1	55566627	55566627	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	55566627	55566627	G	A	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	missense	c.4676	p.S1559L	1.000	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				69	0	0	74	6	7.5
USP24	0	genome.wustl.edu	37	1	55567345	55567345	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	55567345	55567345	G	A	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	missense	c.4577	p.S1526L	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				17	0	0	25	2	7.40741
USP24	0	genome.wustl.edu	37	1	55599811	55599811	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	55599811	55599811	G	A	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	silent	c.2833	p.L945	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				18	0	0	25	5	16.6667
USP24	0	genome.wustl.edu	37	1	55599812	55599812	+	Silent	SNP	A	A	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	55599812	55599812	A	T	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	silent	c.2832	p.L944	0.999	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				18	0	0	25	5	16.6667
USP24	0	genome.wustl.edu	37	1	55603343	55603343	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	55603343	55603343	G	T	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	missense	c.2566	p.Q856K	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				14	0	0	14	3	17.6471
BARHL2	0	genome.wustl.edu	37	1	91182644	91182644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	91182644	91182644	C	T	SNP	BARHL2	ENST00000370445	human	ensembl	74_37	-1	known	missense	c.109	p.E37K	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	BARHL2	HGNC	ENSG00000143032				150	0	0	126	21	14.2857
DNMBP	0	genome.wustl.edu	37	10	101657908	101657908	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	10	101657908	101657908	T	A	SNP	DNMBP	ENST00000342239	human	ensembl	74_37	-1	known	missense	c.2855	p.N952I	0.001	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	DNMBP	HGNC	ENSG00000107554				112	0	0	82	23	21.9048
NFKB2	0	genome.wustl.edu	37	10	104157099	104157099	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	10	104157099	104157099	A	G	SNP	NFKB2	ENST00000369966	human	ensembl	74_37	+1	known	missense	c.436	p.M146V	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150				109	0	0	67	54	44.6281
AFAP1L2	0	genome.wustl.edu	37	10	116064682	116064682	+	Silent	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	10	116064682	116064682	C	T	SNP	AFAP1L2	ENST00000545353	human	ensembl	74_37	-1	known	silent	c.1239	p.L413	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L2	HGNC	ENSG00000169129				57	0	0	68	16	19.0476
SEPHS1	0	genome.wustl.edu	37	10	13361306	13361306	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	10	13361306	13361306	C	G	SNP	SEPHS1	ENST00000327347	human	ensembl	74_37	-1	known	missense	c.1015	p.E339Q	1.000	pfam_AIR_synth_C_dom,superfamily_AIR_synth_C_dom,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS1	HGNC	ENSG00000086475				351	0	0	443	55	11.0442
COMMD3	0	genome.wustl.edu	37	10	22607894	22607894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	10	22607894	22607894	G	A	SNP	COMMD3	ENST00000376836	human	ensembl	74_37	+1	known	missense	c.475	p.D159N	0.991	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD3	HGNC	ENSG00000148444				82	0	0	79	7	8.13953
ABI1	0	genome.wustl.edu	37	10	27037669	27037669	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	10	27037669	27037669	C	G	SNP	ABI1	ENST00000355394	human	ensembl	74_37	-1	known	missense	c.1360	p.A454P	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI1	HGNC	ENSG00000136754				17	0	0	17	4	19.0476
LOC441666	0	genome.wustl.edu	37	10	42832147	42832147	+	RNA	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	10	42832147	42832147	G	T	SNP	LOC441666	ENST00000609841	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.972	-	-	-	no_errors	RP11-313J2.1	Clone_based_vega_gene	ENSG00000215146				18	0	0	17	4	19.0476
NUTM2D	0	genome.wustl.edu	37	10	89120863	89120863	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	10	89120863	89120863	G	A	SNP	NUTM2D	ENST00000381697	human	ensembl	74_37	+1	known	nonsense	c.792	p.W264*	0.034	NULL	NULL	-	no_errors	NUTM2D	HGNC	ENSG00000214562				153	0	0	105	24	18.6047
MMP27	0	genome.wustl.edu	37	11	102573751	102573751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	102573751	102573751	G	A	SNP	MMP27	ENST00000260229	human	ensembl	74_37	-1	known	missense	c.440	p.T147I	0.947	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP27	HGNC	ENSG00000137675				121	0	0	107	14	11.5702
OR8B4	0	genome.wustl.edu	37	11	124294641	124294641	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	124294641	124294641	A	C	SNP	OR8B4	ENST00000356130	human	ensembl	74_37	-1	known	missense	c.127	p.L43V	0.039	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B4	HGNC	ENSG00000198657				59	0	0	65	6	8.4507
ARHGAP32	0	genome.wustl.edu	37	11	128839750	128839750	+	Silent	SNP	T	T	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	128839750	128839750	T	C	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	silent	c.5316	p.Q1772	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				100	0	0	71	8	10.1266
OPCML	0	genome.wustl.edu	37	11	132307151	132307151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	132307151	132307151	G	A	SNP	OPCML	ENST00000541867	human	ensembl	74_37	-1	known	missense	c.629	p.A210V	0.974	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	OPCML	HGNC	ENSG00000183715				91	0	0	81	12	12.9032
LRP4	0	genome.wustl.edu	37	11	46886049	46886049	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	46886049	46886049	G	A	SNP	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	silent	c.5193	p.L1731	1.000	NULL	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569				103	0	0	75	12	13.7931
KBTBD4	0	genome.wustl.edu	37	11	47594886	47594886	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	47594886	47594886	C	A	SNP	KBTBD4	ENST00000430070	human	ensembl	74_37	-1	known	missense	c.1201	p.G401W	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444				139	0	0	89	27	23.2759
OR51B6	0	genome.wustl.edu	37	11	5373170	5373170	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	5373170	5373170	G	T	SNP	OR51B6	ENST00000380219	human	ensembl	74_37	+1	known	missense	c.433	p.R145W	0.004	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR51B6	HGNC	ENSG00000176239				71	0	0	51	12	19.0476
OR4C11	0	genome.wustl.edu	37	11	55371302	55371302	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	55371302	55371302	A	C	SNP	OR4C11	ENST00000302231	human	ensembl	74_37	-1	known	missense	c.548	p.L183W	0.004	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C11	HGNC	ENSG00000172188				84	0	0	68	6	8.10811
OR4S2	0	genome.wustl.edu	37	11	55419079	55419079	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	55419079	55419079	G	T	SNP	OR4S2	ENST00000312422	human	ensembl	74_37	+1	known	missense	c.700	p.A234S	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982				81	0	0	74	8	9.7561
VWCE	0	genome.wustl.edu	37	11	61058812	61058812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	61058812	61058812	G	A	SNP	VWCE	ENST00000535599	human	ensembl	74_37	-1	known	missense	c.347	p.S116L	0.998	NULL	NULL	-	no_errors	VWCE	HGNC	ENSG00000167992				35	0	0	19	5	20.8333
ARHGEF17	0	genome.wustl.edu	37	11	73021058	73021058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	73021058	73021058	C	T	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	missense	c.1375	p.R459W	0.935	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				51	0	0	34	11	24.4444
FAT3	0	genome.wustl.edu	37	11	92539570	92539570	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	92539570	92539570	A	G	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.9136	p.K3046E	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				19	0	0	9	5	35.7143
ANKRD49	0	genome.wustl.edu	37	11	94231264	94231264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	94231264	94231264	G	A	SNP	ANKRD49	ENST00000302755	human	ensembl	74_37	+1	known	missense	c.286	p.E96K	0.680	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD49	HGNC	ENSG00000168876				39	0	0	33	7	17.5
NAA25	0	genome.wustl.edu	37	12	112478294	112478294	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	112478294	112478294	G	T	SNP	NAA25	ENST00000261745	human	ensembl	74_37	-1	known	missense	c.2529	p.F843L	1.000	NULL	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300				38	0	0	37	7	15.9091
NAA25	0	genome.wustl.edu	37	12	112481431	112481431	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	112481431	112481431	G	A	SNP	NAA25	ENST00000261745	human	ensembl	74_37	-1	known	nonsense	c.2248	p.Q750*	0.998	NULL	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300				80	0	0	91	5	5.20833
ZCCHC8	0	genome.wustl.edu	37	12	122958310	122958310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	122958310	122958310	C	T	SNP	ZCCHC8	ENST00000336229	human	ensembl	74_37	-1	known	missense	c.1858	p.E620K	0.000	NULL	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030				131	1	0.757576	124	11	8.14815
SLCO1B3	0	genome.wustl.edu	37	12	21011427	21011427	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	21011427	21011427	C	A	SNP	SLCO1B3	ENST00000553473	human	ensembl	74_37	+1	known	missense	c.281	p.P94Q	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700				64	0	0	53	10	15.873
SLCO1B3	0	genome.wustl.edu	37	12	21242987	21242987	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	21242987	21242987	T	G	SNP	SLCO1B3	ENST00000553473	human	ensembl	74_37	+1	known	missense	c.2194	p.L732V	0.018	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700				18	0	0	15	7	31.8182
KANSL2	0	genome.wustl.edu	37	12	49047906	49047906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	49047906	49047906	G	A	SNP	KANSL2	ENST00000420613	human	ensembl	74_37	-1	known	missense	c.1400	p.S467F	0.867	NULL	NULL	-	no_errors	KANSL2	HGNC	ENSG00000139620				15	0	0	9	2	18.1818
KRT73	0	genome.wustl.edu	37	12	53002163	53002163	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	53002163	53002163	G	A	SNP	KRT73	ENST00000305748	human	ensembl	74_37	-1	known	silent	c.1440	p.Y480	0.907	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049				32	0	0	13	15	53.5714
VWF	0	genome.wustl.edu	37	12	6120874	6120874	+	Silent	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	6120874	6120874	G	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	silent	c.5751	p.V1917	1.000	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				29	0	0	27	3	10
SRGAP1	0	genome.wustl.edu	37	12	64458981	64458981	+	Silent	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	64458981	64458981	C	G	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	silent	c.1107	p.L369	0.997	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				33	0	0	35	10	22.2222
CHD4	0	genome.wustl.edu	37	12	6690489	6690489	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	6690489	6690489	C	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.4831	p.V1611F	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				149	0	0	104	10	8.77193
CD163L1	0	genome.wustl.edu	37	12	7531888	7531888	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	7531888	7531888	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.2057	p.S686L	0.010	superfamily_Srcr_rcpt-rel	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				27	0	0	32	3	8.57143
CD163	0	genome.wustl.edu	37	12	7647956	7647956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	7647956	7647956	G	A	SNP	CD163	ENST00000359156	human	ensembl	74_37	-1	known	missense	c.1141	p.R381C	0.572	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	CD163	HGNC	ENSG00000177575				85	0	0	63	14	18.1818
PPFIA2	0	genome.wustl.edu	37	12	81762526	81762526	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	81762526	81762526	C	G	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.1460	p.R487T	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220				114	0	0	125	8	6.01504
PPFIA2	0	genome.wustl.edu	37	12	81762535	81762535	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	12	81762535	81762535	A	G	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.1451	p.L484S	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220				106	0	0	122	7	5.42636
ENOX1	0	genome.wustl.edu	37	13	43987028	43987028	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	13	43987028	43987028	T	C	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	missense	c.23	p.E8G	0.937	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658				61	0	0	52	8	13.3333
MYCBP2	0	genome.wustl.edu	37	13	77725076	77725076	+	Silent	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	13	77725076	77725076	C	A	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	silent	c.6924	p.V2308	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				66	0	0	50	6	10.7143
GPC5	0	genome.wustl.edu	37	13	92560227	92560227	+	Silent	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	13	92560227	92560227	C	A	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	silent	c.1317	p.A439	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				52	0	0	35	6	14.6341
HSP90AA1	0	genome.wustl.edu	37	14	102552368	102552368	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	14	102552368	102552368	C	A	SNP	HSP90AA1	ENST00000334701	human	ensembl	74_37	-1	known	missense	c.622	p.D208Y	1.000	pirsf_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd	pirsf_Hsp90_fam,pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90AA1	HGNC	ENSG00000080824				85	0	0	93	7	7
AHNAK2	0	genome.wustl.edu	37	14	105411904	105411904	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	14	105411904	105411904	G	C	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.9884	p.S3295C	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				261	0	0	185	23	11.0577
AHNAK2	0	genome.wustl.edu	37	14	105412399	105412399	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	14	105412399	105412399	G	C	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.9389	p.S3130C	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				262	0	0	150	10	6.25
GPHN	0	genome.wustl.edu	37	14	67431953	67431953	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	14	67431953	67431953	G	C	SNP	GPHN	ENST00000478722	human	ensembl	74_37	+1	known	missense	c.874	p.D292H	1.000	NULL	pfam_Mopterin-bd_dom,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd_dom,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd_dom,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723				97	0	0	66	4	5.71429
VTI1B	0	genome.wustl.edu	37	14	68118125	68118125	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	14	68118125	68118125	A	G	SNP	VTI1B	ENST00000554659	human	ensembl	74_37	-1	known	missense	c.676	p.Y226H	1.000	NULL	pfam_Vesicle_trsprt_v-SNARE_N,superfamily_t-SNARE,smart_T_SNARE_dom	-	no_errors	VTI1B	HGNC	ENSG00000100568				66	0	0	51	7	12.069
ADAM20	0	genome.wustl.edu	37	14	70990515	70990515	+	Silent	SNP	A	A	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	14	70990515	70990515	A	G	SNP	ADAM20	ENST00000256389	human	ensembl	74_37	-1	known	silent	c.1110	p.P370	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007				78	0	0	50	8	13.7931
SPTLC2	0	genome.wustl.edu	37	14	78043230	78043230	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	14	78043230	78043230	T	C	SNP	SPTLC2	ENST00000216484	human	ensembl	74_37	-1	known	missense	c.511	p.I171V	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SPTLC2	HGNC	ENSG00000100596				224	0	0	128	56	30.4348
PSMC1	0	genome.wustl.edu	37	14	90736591	90736591	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	14	90736591	90736591	G	C	SNP	PSMC1	ENST00000261303	human	ensembl	74_37	+1	known	missense	c.1083	p.K361N	1.000	superfamily_P-loop_NTPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DUF815,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC1	HGNC	ENSG00000100764				54	0	0	32	5	13.5135
SNAP23	0	genome.wustl.edu	37	15	42823658	42823658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	15	42823658	42823658	G	A	SNP	SNAP23	ENST00000564153	human	ensembl	74_37	+1	putative	missense	c.314	p.R105K	1.000	NULL	smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	SNAP23	HGNC	ENSG00000092531				127	0	0	93	13	12.2642
TLN2	0	genome.wustl.edu	37	15	62939637	62939637	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	15	62939637	62939637	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.128	p.T43I	0.994	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				154	0	0	133	12	8.27586
AKAP13	0	genome.wustl.edu	37	15	86287028	86287028	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	15	86287028	86287028	G	C	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	missense	c.8376	p.K2792N	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				41	0	0	27	5	15.625
CDIPT	0	genome.wustl.edu	37	16	29871964	29871964	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	29871964	29871964	C	G	SNP	CDIPT	ENST00000219789	human	ensembl	74_37	-1	known	missense	c.352	p.E118Q	0.997	pirsf_CDP_diag_ino_3_P_euk	pfam_CDP-OH_P_trans,pirsf_CDP_diag_ino_3_P_euk	-	no_errors	CDIPT	HGNC	ENSG00000103502				27	0	0	36	4	10
HERC2P4	0	genome.wustl.edu	37	16	32191963	32191963	+	RNA	SNP	T	T	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	32191963	32191963	T	A	SNP	HERC2P4	ENST00000566591	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	HERC2P4	HGNC	ENSG00000230267				12	0	0	7	3	30
MEFV	0	genome.wustl.edu	37	16	3293246	3293246	+	Silent	SNP	A	A	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	3293246	3293246	A	G	SNP	MEFV	ENST00000219596	human	ensembl	74_37	-1	known	silent	c.2241	p.S747	0.005	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_DEATH-like_dom,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313				84	0	0	58	10	14.7059
ZNF75A	0	genome.wustl.edu	37	16	3367641	3367641	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	3367641	3367641	G	A	SNP	ZNF75A	ENST00000574298	human	ensembl	74_37	+1	known	nonsense	c.663	p.W221*	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF75A	HGNC	ENSG00000162086				55	0	0	36	8	18.1818
RANBP10	0	genome.wustl.edu	37	16	67762443	67762443	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	67762443	67762443	G	T	SNP	RANBP10	ENST00000411657	human	ensembl	74_37	-1	known	missense	c.1063	p.P355T	0.004	NULL	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP10	HGNC	ENSG00000141084				60	0	0	45	8	15.0943
SF3B3	0	genome.wustl.edu	37	16	70578362	70578362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	70578362	70578362	G	A	SNP	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	missense	c.1255	p.D419N	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				107	0	0	132	13	8.96552
PMFBP1	0	genome.wustl.edu	37	16	72158686	72158686	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	72158686	72158686	G	T	SNP	PMFBP1	ENST00000537465	human	ensembl	74_37	-1	known	missense	c.2584	p.L862I	0.987	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557				81	0	0	82	12	12.766
PMM2	0	genome.wustl.edu	37	16	8941596	8941596	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	8941596	8941596	G	C	SNP	PMM2	ENST00000268261	human	ensembl	74_37	+1	known	missense	c.655	p.E219Q	1.000	pfam_PMM,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	pfam_PMM,pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	-	no_errors	PMM2	HGNC	ENSG00000140650				85	0	0	83	23	21.6981
VPS9D1	0	genome.wustl.edu	37	16	89779059	89779059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	89779059	89779059	C	T	SNP	VPS9D1	ENST00000389386	human	ensembl	74_37	-1	known	missense	c.497	p.R166Q	0.995	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	VPS9D1	HGNC	ENSG00000075399				58	0	0	71	5	6.57895
USP7	0	genome.wustl.edu	37	16	8987952	8987952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	8987952	8987952	G	A	SNP	USP7	ENST00000344836	human	ensembl	74_37	-1	known	missense	c.3212	p.S1071F	1.000	NULL	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555				90	0	0	131	23	14.9351
USP7	0	genome.wustl.edu	37	16	9009127	9009127	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	9009127	9009127	G	C	SNP	USP7	ENST00000344836	human	ensembl	74_37	-1	known	missense	c.1062	p.I354M	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555				63	0	0	75	18	19.3548
USP7	0	genome.wustl.edu	37	16	9017104	9017104	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	16	9017104	9017104	G	T	SNP	USP7	ENST00000344836	human	ensembl	74_37	-1	known	missense	c.351	p.F117L	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pfscan_MATH	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555				139	0	0	151	31	17.033
RAI1	0	genome.wustl.edu	37	17	17696366	17696366	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	17	17696366	17696366	A	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.104	p.Q35L	1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				44	0	0	42	6	12.5
CYB5D2	0	genome.wustl.edu	37	17	4058071	4058071	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	17	4058071	4058071	G	A	SNP	CYB5D2	ENST00000301391	human	ensembl	74_37	+1	known	silent	c.495	p.Q165	0.000	NULL	pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd	-	no_errors	CYB5D2	HGNC	ENSG00000167740				40	0	0	26	17	39.5349
CACNA1G	0	genome.wustl.edu	37	17	48676957	48676957	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	17	48676957	48676957	G	A	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.3427	p.E1143K	0.999	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				14	0	0	12	3	20
CAMTA2	0	genome.wustl.edu	37	17	4875791	4875791	+	Silent	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	17	4875791	4875791	G	T	SNP	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	silent	c.2613	p.G871	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				15	0	0	9	5	35.7143
HELZ	0	genome.wustl.edu	37	17	65147323	65147323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	17	65147323	65147323	C	T	SNP	HELZ	ENST00000358691	human	ensembl	74_37	-1	known	missense	c.2195	p.R732H	1.000	superfamily_P-loop_NTPase	pfam_Znf_CCCH,superfamily_P-loop_NTPase,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265				78	0	0	68	23	25.2747
TP53	0	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				22	0	0	11	7	38.8889
ZNF521	0	genome.wustl.edu	37	18	22806993	22806993	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	18	22806993	22806993	T	A	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.889	p.M297L	0.283	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				68	0	0	48	5	9.43396
NOL4	0	genome.wustl.edu	37	18	31537439	31537439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	18	31537439	31537439	C	T	SNP	NOL4	ENST00000261592	human	ensembl	74_37	-1	known	missense	c.1279	p.V427I	1.000	NULL	NULL	-	no_errors	NOL4	HGNC	ENSG00000101746				29	0	0	24	4	14.2857
CETN1	0	genome.wustl.edu	37	18	580813	580813	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	18	580813	580813	G	A	SNP	CETN1	ENST00000327228	human	ensembl	74_37	+1	known	silent	c.405	p.E135	0.993	pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN1	HGNC	ENSG00000177143				63	0	0	63	12	16
PTPRM	0	genome.wustl.edu	37	18	8394510	8394510	+	Silent	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	18	8394510	8394510	C	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	silent	c.4248	p.I1416	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				41	0	0	32	7	17.9487
DNMT1	0	genome.wustl.edu	37	19	10270586	10270586	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	10270586	10270586	T	C	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	missense	c.1102	p.K368E	0.243	pirsf_DNA_C5-MeTrfase_1_euk	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816				193	0	0	79	43	35.2459
ZNF492	0	genome.wustl.edu	37	19	22847879	22847879	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	22847879	22847879	A	T	SNP	ZNF492	ENST00000456783	human	ensembl	74_37	+1	known	missense	c.1408	p.I470F	0.201	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676				95	0	0	54	10	15.625
ZNF599	0	genome.wustl.edu	37	19	35251301	35251301	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	35251301	35251301	C	G	SNP	ZNF599	ENST00000329285	human	ensembl	74_37	-1	known	missense	c.405	p.L135F	0.081	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF599	HGNC	ENSG00000153896				129	0	0	160	12	6.97674
LSR	0	genome.wustl.edu	37	19	35741220	35741220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	35741220	35741220	C	T	SNP	LSR	ENST00000361790	human	ensembl	74_37	+1	known	missense	c.256	p.P86S	0.102	pfscan_Ig-like_dom	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LSR	HGNC	ENSG00000105699				418	1	0.238663	485	39	7.44275
TMEM147	0	genome.wustl.edu	37	19	36037609	36037609	+	Silent	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	36037609	36037609	G	T	SNP	TMEM147	ENST00000222284	human	ensembl	74_37	+1	known	silent	c.243	p.L81	0.992	pfam_DUF2053_membrane	pfam_DUF2053_membrane	-	no_errors	TMEM147	HGNC	ENSG00000105677				111	0	0	127	15	10.5634
ERF	0	genome.wustl.edu	37	19	42753761	42753761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	42753761	42753761	G	A	SNP	ERF	ENST00000222329	human	ensembl	74_37	-1	known	missense	c.503	p.S168F	0.474	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERF	HGNC	ENSG00000105722				71	0	0	96	8	7.69231
MEGF8	0	genome.wustl.edu	37	19	42860252	42860252	+	Silent	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	42860252	42860252	C	T	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	silent	c.4410	p.I1470	1.000	smart_EG-like_dom	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				16	0	0	13	4	23.5294
PLAUR	0	genome.wustl.edu	37	19	44174251	44174251	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	44174251	44174251	G	A	SNP	PLAUR	ENST00000340093	human	ensembl	74_37	-1	known	missense	c.22	p.P8S	0.113	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	PLAUR	HGNC	ENSG00000011422				70	0	0	76	7	8.43373
SMG9	0	genome.wustl.edu	37	19	44242339	44242339	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	44242339	44242339	G	C	SNP	SMG9	ENST00000270066	human	ensembl	74_37	-1	known	missense	c.844	p.L282V	1.000	pfam_Smg8/Smg9,superfamily_P-loop_NTPase	pfam_Smg8/Smg9,superfamily_P-loop_NTPase	-	no_errors	SMG9	HGNC	ENSG00000105771				92	0	0	120	7	5.51181
ZNF225	0	genome.wustl.edu	37	19	44635941	44635941	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	44635941	44635941	C	T	SNP	ZNF225	ENST00000262894	human	ensembl	74_37	+1	known	nonsense	c.1174	p.R392*	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF225	HGNC	ENSG00000256294				77	0	0	104	11	9.56522
ZNF229	0	genome.wustl.edu	37	19	44933034	44933034	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	44933034	44933034	G	C	SNP	ZNF229	ENST00000588931	human	ensembl	74_37	-1	known	nonsense	c.1922	p.S641*	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383				97	0	0	119	13	9.84848
SULT2A1	0	genome.wustl.edu	37	19	48374741	48374741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	48374741	48374741	G	A	SNP	SULT2A1	ENST00000222002	human	ensembl	74_37	-1	known	missense	c.829	p.L277F	0.019	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT2A1	HGNC	ENSG00000105398				84	0	0	97	15	13.3929
ZNF841	0	genome.wustl.edu	37	19	52569233	52569233	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	52569233	52569233	G	A	SNP	ZNF841	ENST00000389534	human	ensembl	74_37	-1	known	silent	c.1902	p.F634	0.003	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608				117	0	0	172	16	8.51064
VN1R4	0	genome.wustl.edu	37	19	53770092	53770092	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	53770092	53770092	C	A	SNP	VN1R4	ENST00000311170	human	ensembl	74_37	-1	known	missense	c.827	p.C276F	0.043	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Vmron_rcpt_1	-	no_errors	VN1R4	HGNC	ENSG00000228567				68	0	0	74	8	9.7561
PRKCG	0	genome.wustl.edu	37	19	54403920	54403920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	54403920	54403920	G	A	SNP	PRKCG	ENST00000540413	human	ensembl	74_37	+1	known	missense	c.1492	p.D498N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583				307	0	0	391	39	9.06977
NLRP7	0	genome.wustl.edu	37	19	55449557	55449557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	55449557	55449557	G	A	SNP	NLRP7	ENST00000446217	human	ensembl	74_37	-1	known	missense	c.2068	p.R690C	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634				79	0	0	114	7	5.78512
DUXA	0	genome.wustl.edu	37	19	57666681	57666681	+	Silent	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	57666681	57666681	C	T	SNP	DUXA	ENST00000554048	human	ensembl	74_37	-1	known	silent	c.498	p.A166	0.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	DUXA	HGNC	ENSG00000258873				45	0	0	46	5	9.80392
MUC16	0	genome.wustl.edu	37	19	9061107	9061107	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	19	9061107	9061107	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.26339	p.T8780K	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				84	0	0	60	15	20
AFF3	0	genome.wustl.edu	37	2	100360598	100360598	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	100360598	100360598	G	C	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	missense	c.1082	p.S361C	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				54	0	0	76	4	5
SLC9A2	0	genome.wustl.edu	37	2	103318933	103318933	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	103318933	103318933	C	G	SNP	SLC9A2	ENST00000233969	human	ensembl	74_37	+1	known	nonsense	c.1817	p.S606*	1.000	prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616				75	0	0	45	7	13.4615
TTC21B	0	genome.wustl.edu	37	2	166770142	166770142	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	166770142	166770142	C	G	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	missense	c.2153	p.R718T	0.993	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				64	0	0	61	7	10.2941
SCRN3	0	genome.wustl.edu	37	2	175269040	175269040	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	175269040	175269040	A	G	SNP	SCRN3	ENST00000272732	human	ensembl	74_37	+1	known	missense	c.751	p.K251E	1.000	pfam_Peptidase_C69	pfam_Peptidase_C69	-	no_errors	SCRN3	HGNC	ENSG00000144306				36	0	0	29	3	9.375
TTN	0	genome.wustl.edu	37	2	179647145	179647145	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	179647145	179647145	C	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.3174	p.E1058D	0.498	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				39	0	0	38	5	11.6279
NIF3L1	0	genome.wustl.edu	37	2	201768269	201768269	+	Silent	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	201768269	201768269	C	T	SNP	NIF3L1	ENST00000409020	human	ensembl	74_37	+1	known	silent	c.1002	p.V334	0.998	pfam_Interacting_NIF3,superfamily_Interacting_NIF3,pirsf_UCP037490_NIF3_euk,tigrfam_Interacting_NIF3	pfam_Interacting_NIF3,superfamily_Interacting_NIF3,pirsf_UCP037490_NIF3_euk,tigrfam_Interacting_NIF3	-	no_errors	NIF3L1	HGNC	ENSG00000196290				117	0	0	96	16	14.2857
NIF3L1	0	genome.wustl.edu	37	2	201768371	201768371	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	201768371	201768371	G	C	SNP	NIF3L1	ENST00000409020	human	ensembl	74_37	+1	known	missense	c.1104	p.E368D	0.568	superfamily_Interacting_NIF3,pirsf_UCP037490_NIF3_euk,tigrfam_Interacting_NIF3	pfam_Interacting_NIF3,superfamily_Interacting_NIF3,pirsf_UCP037490_NIF3_euk,tigrfam_Interacting_NIF3	-	no_errors	NIF3L1	HGNC	ENSG00000196290				68	0	0	62	5	7.46269
NIF3L1	0	genome.wustl.edu	37	2	201768375	201768375	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	201768375	201768375	G	T	SNP	NIF3L1	ENST00000409020	human	ensembl	74_37	+1	known	missense	c.1108	p.D370Y	1.000	superfamily_Interacting_NIF3,pirsf_UCP037490_NIF3_euk,tigrfam_Interacting_NIF3	pfam_Interacting_NIF3,superfamily_Interacting_NIF3,pirsf_UCP037490_NIF3_euk,tigrfam_Interacting_NIF3	-	no_errors	NIF3L1	HGNC	ENSG00000196290				67	0	0	60	5	7.69231
STRADB	0	genome.wustl.edu	37	2	202340424	202340424	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	202340424	202340424	G	A	SNP	STRADB	ENST00000194530	human	ensembl	74_37	+1	known	silent	c.507	p.V169	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STRADB	HGNC	ENSG00000082146				192	0	0	147	23	13.5294
AGAP1	0	genome.wustl.edu	37	2	236839529	236839529	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	236839529	236839529	G	C	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.1445	p.S482T	0.999	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				52	0	0	35	9	20.4545
SLC4A1AP	0	genome.wustl.edu	37	2	27887235	27887235	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	27887235	27887235	G	A	SNP	SLC4A1AP	ENST00000326019	human	ensembl	74_37	+1	known	missense	c.616	p.V206M	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_FHA_dom,pfam_dsRNA-bd_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLC4A1AP	HGNC	ENSG00000163798				30	0	0	35	7	16.6667
TRMT61B	0	genome.wustl.edu	37	2	29093101	29093101	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	29093101	29093101	G	C	SNP	TRMT61B	ENST00000306108	human	ensembl	74_37	-1	known	missense	c.43	p.R15G	0.000	NULL	pfam_tRNA_MeTrfase_GCD14,pfam_PCMT	-	no_errors	TRMT61B	HGNC	ENSG00000171103				25	0	0	17	2	10.5263
CLIP4	0	genome.wustl.edu	37	2	29379298	29379298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	29379298	29379298	C	T	SNP	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	missense	c.1244	p.T415I	0.056	NULL	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295				45	0	0	43	4	8.51064
GPR75-ASB3	0	genome.wustl.edu	37	2	53992553	53992553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	53992553	53992553	G	A	SNP	GPR75-ASB3	ENST00000352846	human	ensembl	74_37	-1	known	missense	c.271	p.H91Y	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	GPR75-ASB3	HGNC	ENSG00000115239				188	0	0	161	30	15.7068
SIRPA	0	genome.wustl.edu	37	20	1918035	1918035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	20	1918035	1918035	G	A	SNP	SIRPA	ENST00000400068	human	ensembl	74_37	+1	known	missense	c.1348	p.E450K	0.587	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPA	HGNC	ENSG00000198053				72	0	0	63	5	7.35294
RALGAPA2	0	genome.wustl.edu	37	20	20621418	20621418	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	20	20621418	20621418	G	A	SNP	RALGAPA2	ENST00000202677	human	ensembl	74_37	-1	known	silent	c.477	p.F159	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA2	HGNC	ENSG00000188559				47	0	0	45	6	11.7647
FAM182B	0	genome.wustl.edu	37	20	25848660	25848660	+	RNA	SNP	T	T	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	20	25848660	25848660	T	G	SNP	FAM182B	ENST00000424021	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	FAM182B	HGNC	ENSG00000175170				11	0	0	12	4	25
TPX2	0	genome.wustl.edu	37	20	30363673	30363673	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	20	30363673	30363673	G	T	SNP	TPX2	ENST00000340513	human	ensembl	74_37	+1	known	missense	c.612	p.Q204H	0.993	NULL	pfam_TPX2_central_dom,pfam_Aurora-A-bd,pfam_TPX2_dom_C	-	no_errors	TPX2	HGNC	ENSG00000088325				27	0	0	29	3	9.375
BPIFB6	0	genome.wustl.edu	37	20	31627211	31627211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	20	31627211	31627211	C	T	SNP	BPIFB6	ENST00000349552	human	ensembl	74_37	+1	known	missense	c.959	p.P320L	1.000	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB6	HGNC	ENSG00000167104				94	0	0	81	8	8.98876
CHD6	0	genome.wustl.edu	37	20	40122221	40122221	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	20	40122221	40122221	T	G	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.1271	p.K424T	1.000	pfam_Chromo_domain,superfamily_P-loop_NTPase,smart_Chromo_domain/shadow	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				111	0	0	91	17	15.7407
SLC13A3	0	genome.wustl.edu	37	20	45242254	45242254	+	Silent	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	20	45242254	45242254	G	T	SNP	SLC13A3	ENST00000279027	human	ensembl	74_37	-1	known	silent	c.222	p.G74	0.272	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296				13	0	0	25	3	10.7143
TRMT6	0	genome.wustl.edu	37	20	5924624	5924624	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	20	5924624	5924624	A	T	SNP	TRMT6	ENST00000203001	human	ensembl	74_37	-1	known	missense	c.512	p.M171K	1.000	pfam_EIF3_gamma,pirsf_tRNA_m1A_mtfrase	pfam_EIF3_gamma,pirsf_tRNA_m1A_mtfrase	-	no_errors	TRMT6	HGNC	ENSG00000089195				34	0	0	36	12	25
TMPRSS15	0	genome.wustl.edu	37	21	19642429	19642429	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	21	19642429	19642429	C	A	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	nonsense	c.2917	p.G973*	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				157	0	0	119	29	19.5946
NCAM2	0	genome.wustl.edu	37	21	22746243	22746243	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	21	22746243	22746243	G	C	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	missense	c.1105	p.D369H	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				88	0	0	59	11	15.7143
GGA1	0	genome.wustl.edu	37	22	38021940	38021940	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	22	38021940	38021940	C	G	SNP	GGA1	ENST00000343632	human	ensembl	74_37	+1	known	missense	c.1077	p.D359E	0.996	NULL	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA1	HGNC	ENSG00000100083				93	0	0	56	6	9.67742
FAM83F	0	genome.wustl.edu	37	22	40417545	40417545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	22	40417545	40417545	C	T	SNP	FAM83F	ENST00000333407	human	ensembl	74_37	+1	known	missense	c.1031	p.A344V	0.990	NULL	pfam_DUF1669	-	no_errors	FAM83F	HGNC	ENSG00000133477				30	0	0	15	6	28.5714
POLQ	0	genome.wustl.edu	37	3	121251880	121251880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	3	121251880	121251880	G	A	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	missense	c.917	p.S306L	1.000	superfamily_P-loop_NTPase	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				68	0	0	60	6	9.09091
MRPL3	0	genome.wustl.edu	37	3	131220467	131220467	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	3	131220467	131220467	T	A	SNP	MRPL3	ENST00000264995	human	ensembl	74_37	-1	known	missense	c.185	p.K62M	0.995	superfamily_Transl_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_B-barrel,tigrfam_Ribosomal_L3_bac/org-type	-	no_errors	MRPL3	HGNC	ENSG00000114686				247	0	0	179	31	14.7619
P2RY12	0	genome.wustl.edu	37	3	151056202	151056202	+	Silent	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	3	151056202	151056202	G	C	SNP	P2RY12	ENST00000302632	human	ensembl	74_37	-1	known	silent	c.432	p.L144	0.963	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y12_rcpt,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y12_rcpt,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt	-	no_errors	P2RY12	HGNC	ENSG00000169313				79	0	0	108	6	5.26316
VEPH1	0	genome.wustl.edu	37	3	157188178	157188178	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	3	157188178	157188178	G	C	SNP	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	missense	c.279	p.N93K	0.996	superfamily_ARM-type_fold	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415				71	0	0	50	10	16.6667
SLC7A14	0	genome.wustl.edu	37	3	170201172	170201172	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	3	170201172	170201172	C	A	SNP	SLC7A14	ENST00000231706	human	ensembl	74_37	-1	known	missense	c.1046	p.S349I	1.000	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293				99	0	0	94	10	9.61538
NKTR	0	genome.wustl.edu	37	3	42662965	42662965	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	3	42662965	42662965	A	G	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	missense	c.331	p.M111V	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				41	0	0	37	2	5.12821
HTR1F	0	genome.wustl.edu	37	3	88040875	88040875	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	3	88040875	88040875	G	T	SNP	HTR1F	ENST00000319595	human	ensembl	74_37	+1	known	nonsense	c.976	p.E326*	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_5HT1F_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HTR1F	HGNC	ENSG00000179097				33	0	0	26	4	13.3333
EPHA6	0	genome.wustl.edu	37	3	96706657	96706657	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	3	96706657	96706657	C	T	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	missense	c.934	p.P312S	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224				183	0	0	179	26	12.6829
OR5K3	0	genome.wustl.edu	37	3	98110025	98110025	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	3	98110025	98110025	T	A	SNP	OR5K3	ENST00000383695	human	ensembl	74_37	+1	known	missense	c.516	p.H172Q	0.044	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5K3	HGNC	ENSG00000206536				82	0	0	68	23	25.2747
PRMT10	0	genome.wustl.edu	37	4	148575442	148575442	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	4	148575442	148575442	C	A	SNP	PRMT10	ENST00000322396	human	ensembl	74_37	-1	known	missense	c.1606	p.G536C	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRMT10	HGNC	ENSG00000164169				97	0	0	61	19	23.75
EXOC1	0	genome.wustl.edu	37	4	56755095	56755095	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	4	56755095	56755095	G	C	SNP	EXOC1	ENST00000346134	human	ensembl	74_37	+1	known	missense	c.1372	p.E458Q	1.000	pfam_Exocyst_Exoc1/SEC3	pfam_Exocyst_Exoc1/SEC3	-	no_errors	EXOC1	HGNC	ENSG00000090989				65	0	0	49	10	16.9492
PDLIM5	0	genome.wustl.edu	37	4	95578606	95578606	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	4	95578606	95578606	G	C	SNP	PDLIM5	ENST00000317968	human	ensembl	74_37	+1	known	missense	c.1493	p.W498S	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM5	HGNC	ENSG00000163110				44	0	0	48	5	9.43396
MCC	0	genome.wustl.edu	37	5	112379318	112379318	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	5	112379318	112379318	C	G	SNP	MCC	ENST00000302475	human	ensembl	74_37	-1	known	missense	c.2095	p.D699H	0.775	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444				44	0	0	36	3	7.69231
CLPTM1L	0	genome.wustl.edu	37	5	1324909	1324909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	5	1324909	1324909	G	A	SNP	CLPTM1L	ENST00000320895	human	ensembl	74_37	-1	known	missense	c.1166	p.S389F	0.973	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656				110	1	0.900901	192	11	5.41872
FCHSD1	0	genome.wustl.edu	37	5	141019969	141019969	+	RNA	SNP	T	T	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	5	141019969	141019969	T	C	SNP	FCHSD1	ENST00000523856	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	FCHSD1	HGNC	ENSG00000197948				91	0	0	41	17	29.3103
GABRG2	0	genome.wustl.edu	37	5	161569308	161569308	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	5	161569308	161569308	C	A	SNP	GABRG2	ENST00000356592	human	ensembl	74_37	+1	known	missense	c.908	p.A303D	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327				66	0	0	48	14	22.5806
C5orf45	0	genome.wustl.edu	37	5	179264517	179264517	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	5	179264517	179264517	C	A	SNP	C5orf45	ENST00000292586	human	ensembl	74_37	-1	known	missense	c.906	p.K302N	0.001	NULL	NULL	-	no_errors	C5orf45	HGNC	ENSG00000161010				132	0	0	79	26	24.7619
BTNL8	0	genome.wustl.edu	37	5	180377062	180377062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	5	180377062	180377062	C	T	SNP	BTNL8	ENST00000340184	human	ensembl	74_37	+1	known	missense	c.1021	p.H341Y	0.901	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTNL8	HGNC	ENSG00000113303				60	0	0	41	32	43.8356
GNB2L1	0	genome.wustl.edu	37	5	180664713	180664713	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	5	180664713	180664713	C	G	SNP	GNB2L1	ENST00000512805	human	ensembl	74_37	-1	known	missense	c.784	p.E262Q	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB2L1	HGNC	ENSG00000204628				82	0	0	67	11	14.1026
PLEKHG4B	0	genome.wustl.edu	37	5	182371	182371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	5	182371	182371	C	T	SNP	PLEKHG4B	ENST00000283426	human	ensembl	74_37	+1	known	missense	c.3749	p.T1250M	0.020	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404				29	0	0	20	14	41.1765
PDE8B	0	genome.wustl.edu	37	5	76621533	76621533	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	5	76621533	76621533	T	G	SNP	PDE8B	ENST00000264917	human	ensembl	74_37	+1	known	missense	c.569	p.F190C	1.000	pfam_Sig_transdc_resp-reg_receiver,superfamily_CheY-like_superfamily	pfam_PDEase_catalytic_dom,pfam_PDEase_PDE8,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,pfam_PAS_fold_3,superfamily_PAS,superfamily_CheY-like_superfamily,smart_PAS,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8B	HGNC	ENSG00000113231				58	0	0	43	11	20.3704
RASGRF2	0	genome.wustl.edu	37	5	80419490	80419490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	5	80419490	80419490	G	A	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	missense	c.2500	p.A834T	0.849	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				65	0	0	37	5	11.9048
RFX6	0	genome.wustl.edu	37	6	117246699	117246699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	6	117246699	117246699	G	A	SNP	RFX6	ENST00000332958	human	ensembl	74_37	+1	known	missense	c.1762	p.A588T	0.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002				92	0	0	71	4	5.33333
TMEM200A	0	genome.wustl.edu	37	6	130761934	130761934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	6	130761934	130761934	G	A	SNP	TMEM200A	ENST00000296978	human	ensembl	74_37	+1	known	missense	c.367	p.D123N	0.999	pfam_DUF2371_TMEM200	pfam_DUF2371_TMEM200	-	no_errors	TMEM200A	HGNC	ENSG00000164484				64	0	0	47	7	12.963
EYA4	0	genome.wustl.edu	37	6	133833864	133833864	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	6	133833864	133833864	T	G	SNP	EYA4	ENST00000355167	human	ensembl	74_37	+1	known	missense	c.1287	p.C429W	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319				140	0	0	90	17	15.8879
C6orf118	0	genome.wustl.edu	37	6	165712986	165712986	+	Silent	SNP	T	T	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	6	165712986	165712986	T	C	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	silent	c.882	p.E294	1.000	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				36	0	0	15	3	16.6667
TCP10L2	0	genome.wustl.edu	37	6	167585758	167585758	+	Silent	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	6	167585758	167585758	C	T	SNP	TCP10L2	ENST00000283507	human	ensembl	74_37	+1	known	silent	c.126	p.S42	0.000	NULL	NULL	-	no_errors	TCP10L2	HGNC	ENSG00000166984				57	0	0	41	5	10.8696
TDRD6	0	genome.wustl.edu	37	6	46658843	46658843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	6	46658843	46658843	C	T	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	missense	c.2978	p.T993M	1.000	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				39	0	0	26	6	18.75
PKHD1	0	genome.wustl.edu	37	6	51907859	51907859	+	Silent	SNP	T	T	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	6	51907859	51907859	T	A	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	silent	c.2895	p.T965	0.008	pfam_IPT,superfamily_Ig_E-set	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				78	0	0	45	7	13.4615
KMT2E	0	genome.wustl.edu	37	7	104742409	104742409	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	104742409	104742409	C	G	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.1964	p.S655C	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				72	0	0	60	8	11.7647
ANKRD7	0	genome.wustl.edu	37	7	117876182	117876182	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	117876182	117876182	G	T	SNP	ANKRD7	ENST00000357099	human	ensembl	74_37	+1	known	missense	c.616	p.A206S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD7	HGNC	ENSG00000106013				83	0	0	81	7	7.95455
CPA2	0	genome.wustl.edu	37	7	129919480	129919480	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	129919480	129919480	A	C	SNP	CPA2	ENST00000222481	human	ensembl	74_37	+1	known	missense	c.965	p.K322T	0.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA2	HGNC	ENSG00000158516				53	0	0	46	16	25.8065
HTR5A	0	genome.wustl.edu	37	7	154863188	154863188	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	154863188	154863188	G	T	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	missense	c.579	p.Q193H	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219				39	0	0	30	7	18.9189
VIPR2	0	genome.wustl.edu	37	7	158824743	158824743	+	Silent	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	158824743	158824743	G	T	SNP	VIPR2	ENST00000262178	human	ensembl	74_37	-1	known	silent	c.987	p.S329	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_2,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR2	HGNC	ENSG00000106018				41	0	0	44	7	13.7255
AGR2	0	genome.wustl.edu	37	7	16841346	16841346	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	16841346	16841346	G	A	SNP	AGR2	ENST00000419572	human	ensembl	74_37	-1	known	silent	c.135	p.V45	0.996	NULL	superfamily_Thioredoxin-like_fold	-	no_errors	AGR2	HGNC	ENSG00000106541				76	0	0	108	12	10
ABCB5	0	genome.wustl.edu	37	7	20793071	20793071	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	20793071	20793071	A	C	SNP	ABCB5	ENST00000258738	human	ensembl	74_37	+1	known	missense	c.2183	p.K728T	0.988	pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846				60	0	0	59	7	10.6061
SNX8	0	genome.wustl.edu	37	7	2317745	2317745	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	2317745	2317745	A	C	SNP	SNX8	ENST00000222990	human	ensembl	74_37	-1	known	missense	c.290	p.V97G	0.999	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX8	HGNC	ENSG00000106266				97	0	0	103	16	13.4454
DPY19L2P1	0	genome.wustl.edu	37	7	35131548	35131548	+	RNA	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	35131548	35131548	G	A	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				48	0	0	51	5	8.92857
C7orf26	0	genome.wustl.edu	37	7	6629948	6629948	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	6629948	6629948	G	A	SNP	C7orf26	ENST00000344417	human	ensembl	74_37	+1	known	missense	c.34	p.D12N	1.000	NULL	NULL	-	no_errors	C7orf26	HGNC	ENSG00000146576				22	0	0	16	3	15.7895
SAMD9	0	genome.wustl.edu	37	7	92733964	92733964	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	92733964	92733964	G	C	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	missense	c.1447	p.L483V	0.993	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413				71	0	0	58	6	9.375
NPTX2	0	genome.wustl.edu	37	7	98256591	98256591	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	7	98256591	98256591	G	T	SNP	NPTX2	ENST00000265634	human	ensembl	74_37	+1	known	missense	c.1003	p.G335W	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX2	HGNC	ENSG00000106236				59	0	0	50	9	15.2542
ZFPM2	0	genome.wustl.edu	37	8	106815454	106815454	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	8	106815454	106815454	G	A	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	silent	c.3144	p.L1048	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				22	0	0	24	6	20
TRPS1	0	genome.wustl.edu	37	8	116599425	116599425	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	8	116599425	116599425	C	A	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	nonsense	c.2503	p.E835*	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				92	0	0	70	55	44
BMP1	0	genome.wustl.edu	37	8	22051982	22051982	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	8	22051982	22051982	A	G	SNP	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	missense	c.1322	p.K441R	1.000	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				53	0	0	44	3	6.38298
SOX17	0	genome.wustl.edu	37	8	55371726	55371726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	8	55371726	55371726	C	T	SNP	SOX17	ENST00000297316	human	ensembl	74_37	+1	known	missense	c.416	p.P139L	1.000	superfamily_HMG_box_dom	pfam_Sox_C_TAD,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX17	HGNC	ENSG00000164736				33	0	0	20	8	28.5714
PREX2	0	genome.wustl.edu	37	8	69012077	69012077	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	8	69012077	69012077	A	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.2714	p.K905T	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				38	0	0	57	8	12.3077
KIAA0368	0	genome.wustl.edu	37	9	114135651	114135651	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	9	114135651	114135651	C	A	SNP	KIAA0368	ENST00000259335	human	ensembl	74_37	-1	known	missense	c.4747	p.D1583Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813				113	0	0	84	14	14.2857
C9orf84	0	genome.wustl.edu	37	9	114464486	114464486	+	Silent	SNP	A	A	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	9	114464486	114464486	A	G	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	silent	c.2796	p.Y932	0.984	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				36	0	0	22	4	15.3846
DFNB31	0	genome.wustl.edu	37	9	117266506	117266506	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	9	117266506	117266506	G	A	SNP	DFNB31	ENST00000362057	human	ensembl	74_37	-1	known	silent	c.576	p.N192	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397				111	0	0	87	23	20.9091
OR1Q1	0	genome.wustl.edu	37	9	125377550	125377550	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	9	125377550	125377550	C	G	SNP	OR1Q1	ENST00000297913	human	ensembl	74_37	+1	known	missense	c.534	p.F178L	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1Q1	HGNC	ENSG00000165202				117	0	0	77	12	13.4831
MLLT3	0	genome.wustl.edu	37	9	20414379	20414379	+	Silent	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	9	20414379	20414379	G	A	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	silent	c.465	p.S155	0.991	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				20	0	0	6	3	33.3333
KIAA2026	0	genome.wustl.edu	37	9	5922408	5922408	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	9	5922408	5922408	T	A	SNP	KIAA2026	ENST00000399933	human	ensembl	74_37	-1	novel	missense	c.3588	p.L1196F	0.604	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354				76	0	0	48	13	21.3115
TRPM6	0	genome.wustl.edu	37	9	77415356	77415356	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	9	77415356	77415356	G	C	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.2052	p.F684L	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				67	0	0	56	9	13.8462
VPS13A	0	genome.wustl.edu	37	9	79933226	79933226	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	9	79933226	79933226	G	T	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	nonsense	c.5032	p.E1678*	0.702	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				54	0	0	42	11	20.7547
PAK3	0	genome.wustl.edu	37	X	110435772	110435772	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	X	110435772	110435772	G	C	SNP	PAK3	ENST00000360648	human	ensembl	74_37	+1	known	missense	c.1026	p.K342N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK3	HGNC	ENSG00000077264				57	0	0	36	3	7.69231
ARHGAP36	0	genome.wustl.edu	37	X	130218985	130218985	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	X	130218985	130218985	T	A	SNP	ARHGAP36	ENST00000276211	human	ensembl	74_37	+1	known	missense	c.902	p.M301K	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256				161	0	0	130	29	18.239
TFDP3	0	genome.wustl.edu	37	X	132351694	132351694	+	Silent	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	X	132351694	132351694	C	T	SNP	TFDP3	ENST00000310125	human	ensembl	74_37	-1	known	silent	c.594	p.Q198	0.999	pfam_Transc_factor_DP_C,pirsf_Transcrpt_fac_DP	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcrpt_fac_DP	-	no_errors	TFDP3	HGNC	ENSG00000183434				65	0	0	48	7	12.7273
FMR1	0	genome.wustl.edu	37	X	147024689	147024689	+	Silent	SNP	T	T	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	X	147024689	147024689	T	C	SNP	FMR1	ENST00000370475	human	ensembl	74_37	+1	known	silent	c.1314	p.D438	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081				163	0	0	119	26	17.931
PASD1	0	genome.wustl.edu	37	X	150828296	150828296	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	X	150828296	150828296	C	T	SNP	PASD1	ENST00000370357	human	ensembl	74_37	+1	known	missense	c.829	p.P277S	0.000	NULL	superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049				83	0	0	54	43	44.3299
L1CAM	0	genome.wustl.edu	37	X	153137610	153137610	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	X	153137610	153137610	C	T	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	missense	c.403	p.E135K	0.999	smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				51	0	0	39	5	11.3636
NHS	0	genome.wustl.edu	37	X	17750507	17750507	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	X	17750507	17750507	C	T	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	nonsense	c.4816	p.Q1606*	1.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				104	0	0	78	20	20.4082
MAGEE1	0	genome.wustl.edu	37	X	75650042	75650042	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	X	75650042	75650042	A	C	SNP	MAGEE1	ENST00000361470	human	ensembl	74_37	+1	known	missense	c.1719	p.E573D	0.153	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934				16	0	0	8	4	33.3333
P2RY10	0	genome.wustl.edu	37	X	78216055	78216055	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	X	78216055	78216055	T	A	SNP	P2RY10	ENST00000171757	human	ensembl	74_37	+1	known	missense	c.38	p.M13K	0.996	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	P2RY10	HGNC	ENSG00000078589				78	0	0	65	18	21.6867
POU3F4	0	genome.wustl.edu	37	X	82764197	82764197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	X	82764197	82764197	G	A	SNP	POU3F4	ENST00000373200	human	ensembl	74_37	+1	known	missense	c.865	p.V289I	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767				30	0	0	25	12	32.4324
BCL10	0	genome.wustl.edu	37	1	85736511	85736511	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	1	85736511	85736511	T	-	DEL	BCL10	ENST00000370580	human	ensembl	74_37	-1	known	frame_shift_del	c.136	p.I46fs	1.000	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	BCL10	HGNC	ENSG00000142867				77	0	0	71	6	7.79221
AMBRA1	0	genome.wustl.edu	37	11	46568608	46568609	+	RNA	INS	-	-	A			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	11	46568608	46568609	-	A	INS	AMBRA1	ENST00000524783	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.032:0.881	-	-	-	no_errors	AMBRA1	HGNC	ENSG00000110497				24	0	0	19	5	20.8333
ZFP36L2	0	genome.wustl.edu	37	2	43452520	43452522	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	2	43452520	43452522	CTG	-	DEL	ZFP36L2	ENST00000282388	human	ensembl	74_37	-1	known	in_frame_del	c.423_421	p.Q141in_frame_del	1.000:1.000:1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518				36	0	0	25	2	7.40741
OTUD4	0	genome.wustl.edu	37	4	146071793	146071793	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	4	146071793	146071793	T	-	DEL	OTUD4	ENST00000447906	human	ensembl	74_37	-1	known	frame_shift_del	c.1131	p.P378fs	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164				85	0	0	44	26	37.1429
MAP3K7	0	genome.wustl.edu	37	6	91296568	91296570	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-7716-01A-21D-2053-08	TCGA-BR-7716-10A-01D-2053-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27905ee2-3613-4023-b996-6fd0640a9e24	e489d5ac-5dca-4378-8c94-e65dbd5ef207	6	91296568	91296570	GAG	-	DEL	MAP3K7	ENST00000369329	human	ensembl	74_37	-1	known	in_frame_del	c.35_33	p.S14in_frame_del	1.000:1.000:1.000	pirsf_MAPKKK7,superfamily_Kinase-like_dom	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341				33	0	0	42	3	6.66667
