Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SYCP1	0	genome.wustl.edu	37	1	115419393	115419393	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	115419393	115419393	C	A	SNP	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	missense	c.763	p.Q255K	0.998	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				13	0	0	5	4	44.4444
ASH1L	0	genome.wustl.edu	37	1	155449512	155449512	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	155449512	155449512	C	T	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.3149	p.R1050K	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				67	0	0	52	23	30.6667
HMCN1	0	genome.wustl.edu	37	1	186083167	186083167	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	186083167	186083167	A	C	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.11188	p.T3730P	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				138	0	0	112	34	23.2877
CRB1	0	genome.wustl.edu	37	1	197391073	197391073	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	197391073	197391073	C	T	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	silent	c.2115	p.P705	0.000	pfam_EG-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				30	0	0	47	6	11.3208
C1orf115	0	genome.wustl.edu	37	1	220870050	220870050	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	220870050	220870050	A	T	SNP	C1orf115	ENST00000294889	human	ensembl	74_37	+1	known	missense	c.406	p.S136C	0.909	NULL	NULL	-	no_errors	C1orf115	HGNC	ENSG00000162817				132	0	0	98	9	8.41121
LYST	0	genome.wustl.edu	37	1	235993555	235993555	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	235993555	235993555	G	C	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.163	p.L55V	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				65	0	0	63	11	14.8649
OR2L5	0	genome.wustl.edu	37	1	248185559	248185559	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	248185559	248185559	A	C	SNP	OR2L5	ENST00000355281	human	ensembl	74_37	+1	known	missense	c.310	p.M104L	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L5	HGNC	ENSG00000197454				85	0	0	65	14	17.7215
DEPDC1	0	genome.wustl.edu	37	1	68949689	68949689	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	68949689	68949689	T	A	SNP	DEPDC1	ENST00000456315	human	ensembl	74_37	-1	known	missense	c.854	p.D285V	0.813	superfamily_Rho_GTPase_activation_prot	pfam_DEP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC1	HGNC	ENSG00000024526				86	0	0	37	40	51.9481
LPHN2	0	genome.wustl.edu	37	1	82416098	82416098	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	82416098	82416098	A	T	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.1424	p.K475M	1.000	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				76	0	0	24	31	56.3636
GPR157	0	genome.wustl.edu	37	1	9171478	9171478	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	9171478	9171478	C	T	SNP	GPR157	ENST00000377411	human	ensembl	74_37	-1	known	missense	c.454	p.V152M	1.000	pfam_GPCR_2_secretin-like,pfam_GPCR_Rhodpsn,pfam_Frizzled,pfscan_GPCR_Rhodpsn_7TM,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_Rhodpsn,pfam_Frizzled,pfscan_GPCR_Rhodpsn_7TM,pfscan_GPCR_2-like,prints_GCR1-cAMP_receptor	-	no_errors	GPR157	HGNC	ENSG00000180758				79	0	0	17	28	62.2222
ABCC2	0	genome.wustl.edu	37	10	101577118	101577118	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	10	101577118	101577118	G	T	SNP	ABCC2	ENST00000370449	human	ensembl	74_37	+1	known	missense	c.2148	p.K716N	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839				64	0	0	33	26	44.0678
HMX2	0	genome.wustl.edu	37	10	124909459	124909459	+	Silent	SNP	G	G	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	10	124909459	124909459	G	T	SNP	HMX2	ENST00000339992	human	ensembl	74_37	+1	known	silent	c.642	p.A214	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HMX2	HGNC	ENSG00000188816				20	0	0	12	4	25
BMI1	0	genome.wustl.edu	37	10	22616977	22616977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	10	22616977	22616977	G	A	SNP	BMI1	ENST00000376663	human	ensembl	74_37	+1	known	missense	c.415	p.D139N	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	BMI1	HGNC	ENSG00000168283				85	0	0	83	35	29.661
ATM	0	genome.wustl.edu	37	11	108214049	108214049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	11	108214049	108214049	G	A	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.8369	p.R2790K	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				119	0	0	80	21	20.7921
TECTA	0	genome.wustl.edu	37	11	121038845	121038845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	11	121038845	121038845	G	A	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.5669	p.R1890H	1.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				151	1	0.657895	94	42	30.8824
OR8D1	0	genome.wustl.edu	37	11	124180557	124180557	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	11	124180557	124180557	C	A	SNP	OR8D1	ENST00000357821	human	ensembl	74_37	-1	known	missense	c.106	p.V36L	0.000	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341				187	0	0	146	15	9.31677
MS4A14	0	genome.wustl.edu	37	11	60183029	60183029	+	Silent	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	11	60183029	60183029	T	C	SNP	MS4A14	ENST00000300187	human	ensembl	74_37	+1	known	silent	c.588	p.N196	0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928				87	0	0	53	4	7.01754
SF1	0	genome.wustl.edu	37	11	64536711	64536711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	11	64536711	64536711	G	A	SNP	SF1	ENST00000377390	human	ensembl	74_37	-1	known	missense	c.763	p.R255W	0.989	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066				68	0	0	28	23	45.098
YIF1A	0	genome.wustl.edu	37	11	66055143	66055143	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	11	66055143	66055143	C	A	SNP	YIF1A	ENST00000376901	human	ensembl	74_37	-1	known	missense	c.353	p.W118L	1.000	pfam_Hrf1	pfam_Hrf1,pfam_Yip1	-	no_errors	YIF1A	HGNC	ENSG00000174851				31	0	0	61	8	11.5942
PELI3	0	genome.wustl.edu	37	11	66240870	66240870	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	11	66240870	66240870	C	T	SNP	PELI3	ENST00000320740	human	ensembl	74_37	+1	known	silent	c.615	p.A205	0.127	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI3	HGNC	ENSG00000174516				54	0	0	87	6	6.45161
RBMXL2	0	genome.wustl.edu	37	11	7111074	7111074	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	11	7111074	7111074	C	T	SNP	RBMXL2	ENST00000306904	human	ensembl	74_37	+1	known	silent	c.723	p.R241	1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL2	HGNC	ENSG00000170748				38	0	0	41	3	6.81818
TENM4	0	genome.wustl.edu	37	11	78467865	78467865	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	11	78467865	78467865	T	G	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.2741	p.N914T	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				33	0	0	23	5	17.8571
AP2A2	0	genome.wustl.edu	37	11	992584	992584	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	11	992584	992584	A	G	SNP	AP2A2	ENST00000332231	human	ensembl	74_37	+1	known	missense	c.1354	p.I452V	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020				41	0	0	40	6	13.0435
RASSF8	0	genome.wustl.edu	37	12	26217559	26217559	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	12	26217559	26217559	C	T	SNP	RASSF8	ENST00000282884	human	ensembl	74_37	+1	known	nonsense	c.232	p.R78*	0.985	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	-	no_errors	RASSF8	HGNC	ENSG00000123094				147	0	0	91	39	30
ADAMTS20	0	genome.wustl.edu	37	12	43925975	43925975	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	12	43925975	43925975	G	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	silent	c.477	p.N159	1.000	pfam_Peptidase_M12B_N	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				94	0	0	56	3	5.08475
ANP32D	0	genome.wustl.edu	37	12	48866792	48866792	+	Silent	SNP	C	C	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	12	48866792	48866792	C	A	SNP	ANP32D	ENST00000266594	human	ensembl	74_37	+1	known	silent	c.345	p.L115	0.998	NULL	NULL	-	no_errors	ANP32D	HGNC	ENSG00000139223				60	0	0	18	4	18.1818
KRT73	0	genome.wustl.edu	37	12	53005086	53005086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	12	53005086	53005086	G	A	SNP	KRT73	ENST00000305748	human	ensembl	74_37	-1	known	missense	c.1012	p.R338W	0.184	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049				65	0	0	68	4	5.55556
ENSG00000257434	0	genome.wustl.edu	37	12	75436057	75436057	+	RNA	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	12	75436057	75436057	T	C	SNP	ENSG00000257434	ENST00000547040	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-81K13.1	Clone_based_vega_gene	ENSG00000257434				48	0	0	34	9	20.9302
PPFIA2	0	genome.wustl.edu	37	12	81660768	81660768	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	12	81660768	81660768	T	G	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.3518	p.N1173T	1.000	superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220				25	0	0	16	4	20
SKA3	0	genome.wustl.edu	37	13	21750538	21750538	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	13	21750538	21750538	G	A	SNP	SKA3	ENST00000314759	human	ensembl	74_37	-1	known	nonsense	c.79	p.R27*	1.000	NULL	NULL	-	no_errors	SKA3	HGNC	ENSG00000165480				12	0	0	8	3	27.2727
MAB21L1	0	genome.wustl.edu	37	13	36049983	36049983	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	13	36049983	36049983	G	A	SNP	MAB21L1	ENST00000379919	human	ensembl	74_37	-1	known	missense	c.293	p.A98V	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MAB21L1	HGNC	ENSG00000180660				114	0	0	98	22	18.3333
CCNA1	0	genome.wustl.edu	37	13	37014131	37014131	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	13	37014131	37014131	A	G	SNP	CCNA1	ENST00000255465	human	ensembl	74_37	+1	known	missense	c.909	p.I303M	0.963	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNA1	HGNC	ENSG00000133101				49	0	0	26	12	31.5789
STOML3	0	genome.wustl.edu	37	13	39542650	39542650	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	13	39542650	39542650	C	T	SNP	STOML3	ENST00000379631	human	ensembl	74_37	-1	known	missense	c.538	p.E180K	0.980	pfam_Band_7,smart_Band_7,prints_Stomatin	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	STOML3	HGNC	ENSG00000133115				130	0	0	121	21	14.7887
MYCBP2	0	genome.wustl.edu	37	13	77642839	77642839	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	13	77642839	77642839	G	C	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.12032	p.A4011G	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				82	0	0	75	16	17.5824
SLITRK5	0	genome.wustl.edu	37	13	88329875	88329875	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	13	88329875	88329875	C	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	silent	c.2232	p.P744	0.998	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				105	0	0	73	22	23.1579
MARK3	0	genome.wustl.edu	37	14	103928798	103928798	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	14	103928798	103928798	G	A	SNP	MARK3	ENST00000429436	human	ensembl	74_37	+1	known	silent	c.540	p.K180	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK3	HGNC	ENSG00000075413				68	0	0	45	12	21.0526
AHNAK2	0	genome.wustl.edu	37	14	105413100	105413100	+	Silent	SNP	C	C	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	14	105413100	105413100	C	G	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.8688	p.L2896	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				256	0	0	183	33	15.2778
JAG2	0	genome.wustl.edu	37	14	105609473	105609473	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	14	105609473	105609473	G	A	SNP	JAG2	ENST00000331782	human	ensembl	74_37	-1	known	silent	c.3276	p.S1092	0.193	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	JAG2	HGNC	ENSG00000184916				28	0	0	22	2	8.33333
MYH6	0	genome.wustl.edu	37	14	23856775	23856775	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	14	23856775	23856775	T	C	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.4613	p.E1538G	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				77	0	0	87	20	18.6916
FOXG1	0	genome.wustl.edu	37	14	29237173	29237173	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	14	29237173	29237173	C	G	SNP	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	missense	c.688	p.R230G	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165				62	0	0	54	19	26.0274
EIF2B2	0	genome.wustl.edu	37	14	75473366	75473366	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	14	75473366	75473366	C	G	SNP	EIF2B2	ENST00000266126	human	ensembl	74_37	+1	known	missense	c.780	p.H260Q	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B2	HGNC	ENSG00000119718				349	0	0	247	79	24.2331
MKRN3	0	genome.wustl.edu	37	15	23811829	23811829	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	15	23811829	23811829	G	A	SNP	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	silent	c.900	p.S300	0.366	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455				39	0	0	27	3	10
CHRNA7	0	genome.wustl.edu	37	15	32460293	32460293	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	15	32460293	32460293	C	T	SNP	CHRNA7	ENST00000454250	human	ensembl	74_37	+1	known	silent	c.1230	p.N410	0.569	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344				31	0	0	17	3	15
FMN1	0	genome.wustl.edu	37	15	33261313	33261313	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	15	33261313	33261313	A	C	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	missense	c.1920	p.N640K	0.061	NULL	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				30	0	0	16	4	20
TGM5	0	genome.wustl.edu	37	15	43552469	43552469	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	15	43552469	43552469	T	A	SNP	TGM5	ENST00000220420	human	ensembl	74_37	-1	known	missense	c.217	p.T73S	1.000	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055				40	0	0	26	7	21.2121
DUOX1	0	genome.wustl.edu	37	15	45428734	45428734	+	Silent	SNP	G	G	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	15	45428734	45428734	G	T	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	silent	c.933	p.R311	0.152	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				121	0	0	66	22	25
DUOX1	0	genome.wustl.edu	37	15	45428735	45428735	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	15	45428735	45428735	C	T	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	missense	c.934	p.P312S	0.162	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				121	0	0	66	21	24.1379
MAN2C1	0	genome.wustl.edu	37	15	75648552	75648552	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	15	75648552	75648552	G	A	SNP	MAN2C1	ENST00000267978	human	ensembl	74_37	-1	known	silent	c.2895	p.S965	0.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400				24	0	0	31	2	6.06061
AKAP13	0	genome.wustl.edu	37	15	86225415	86225415	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	15	86225415	86225415	C	T	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	missense	c.5140	p.H1714Y	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				48	0	0	58	13	18.3099
WDR93	0	genome.wustl.edu	37	15	90281389	90281389	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	15	90281389	90281389	C	T	SNP	WDR93	ENST00000268130	human	ensembl	74_37	+1	known	missense	c.1883	p.P628L	0.005	NULL	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527				298	0	0	326	59	15.3247
PRM1	0	genome.wustl.edu	37	16	11375074	11375074	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	16	11375074	11375074	G	A	SNP	PRM1	ENST00000312511	human	ensembl	74_37	-1	known	missense	c.22	p.R8C	1.000	pfam_Protamine_P1	pfam_Protamine_P1	-	no_errors	PRM1	HGNC	ENSG00000175646				116	0	0	62	24	27.907
PDZD9	0	genome.wustl.edu	37	16	21999999	21999999	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	16	21999999	21999999	G	A	SNP	PDZD9	ENST00000424898	human	ensembl	74_37	-1	known	nonsense	c.325	p.R109*	0.981	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD9	HGNC	ENSG00000155714				74	0	0	33	13	28.2609
OR2C1	0	genome.wustl.edu	37	16	3406257	3406257	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	16	3406257	3406257	G	C	SNP	OR2C1	ENST00000304936	human	ensembl	74_37	+1	known	missense	c.317	p.W106S	0.989	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2C1	HGNC	ENSG00000168158				39	0	0	33	4	10.8108
TRAP1	0	genome.wustl.edu	37	16	3714317	3714317	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	16	3714317	3714317	C	T	SNP	TRAP1	ENST00000246957	human	ensembl	74_37	-1	known	silent	c.1527	p.E509	0.998	pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90_fam	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602				16	0	0	16	3	15.7895
CDH11	0	genome.wustl.edu	37	16	64981997	64981997	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	16	64981997	64981997	C	A	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.1900	p.V634L	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				51	0	0	35	7	16.6667
TANGO6	0	genome.wustl.edu	37	16	68893968	68893968	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	16	68893968	68893968	G	T	SNP	TANGO6	ENST00000261778	human	ensembl	74_37	+1	known	missense	c.276	p.W92C	1.000	NULL	pfam_DUF2435,pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TANGO6	HGNC	ENSG00000103047				106	1	0.934579	57	27	32.1429
CNTNAP4	0	genome.wustl.edu	37	16	76555129	76555129	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	16	76555129	76555129	T	C	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	missense	c.2455	p.F819L	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				148	1	0.671141	92	36	28.125
ADAMTS18	0	genome.wustl.edu	37	16	77327122	77327122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	16	77327122	77327122	G	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.3040	p.R1014C	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				114	1	0.869565	79	11	12.2222
MYH13	0	genome.wustl.edu	37	17	10233733	10233733	+	Silent	SNP	C	C	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	17	10233733	10233733	C	G	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	silent	c.2406	p.R802	0.925	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				36	0	0	19	5	20.8333
MYH1	0	genome.wustl.edu	37	17	10404711	10404711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	17	10404711	10404711	C	T	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.3454	p.E1152K	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				154	0	0	108	16	12.9032
MAP2K3	0	genome.wustl.edu	37	17	21202209	21202209	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	17	21202209	21202209	T	C	SNP	MAP2K3	ENST00000342679	human	ensembl	74_37	+1	known	missense	c.136	p.S46P	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152				90	0	0	74	4	5.12821
KRTAP9-3	0	genome.wustl.edu	37	17	39388969	39388969	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	17	39388969	39388969	G	C	SNP	KRTAP9-3	ENST00000411528	human	ensembl	74_37	+1	known	missense	c.216	p.Q72H	0.001	NULL	NULL	-	no_errors	KRTAP9-3	HGNC	ENSG00000204873				93	0	0	86	45	34.3511
EFTUD2	0	genome.wustl.edu	37	17	42929086	42929086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	17	42929086	42929086	G	A	SNP	EFTUD2	ENST00000426333	human	ensembl	74_37	-1	known	missense	c.2815	p.R939C	0.996	NULL	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883				19	0	0	4	11	73.3333
ABCC3	0	genome.wustl.edu	37	17	48761441	48761441	+	Silent	SNP	G	G	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	17	48761441	48761441	G	T	SNP	ABCC3	ENST00000285238	human	ensembl	74_37	+1	known	silent	c.4086	p.L1362	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846				36	0	0	33	2	5.71429
TEX14	0	genome.wustl.edu	37	17	56651574	56651574	+	Silent	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	17	56651574	56651574	T	C	SNP	TEX14	ENST00000240361	human	ensembl	74_37	-1	known	silent	c.3495	p.S1165	0.068	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	TEX14	HGNC	ENSG00000121101				73	0	0	34	15	30.6122
ENGASE	0	genome.wustl.edu	37	17	77082221	77082221	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	17	77082221	77082221	G	A	SNP	ENGASE	ENST00000579016	human	ensembl	74_37	+1	known	silent	c.2022	p.P674	0.000	NULL	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280				105	0	0	95	22	18.8034
CCDC42	0	genome.wustl.edu	37	17	8647423	8647423	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	17	8647423	8647423	G	T	SNP	CCDC42	ENST00000293845	human	ensembl	74_37	-1	known	missense	c.163	p.H55N	0.994	NULL	NULL	-	no_errors	CCDC42	HGNC	ENSG00000161973				84	0	0	48	16	25
TAF4B	0	genome.wustl.edu	37	18	23866069	23866069	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	18	23866069	23866069	T	G	SNP	TAF4B	ENST00000269142	human	ensembl	74_37	+1	known	missense	c.1196	p.L399R	0.090	NULL	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384				112	0	0	68	7	9.33333
THOC1	0	genome.wustl.edu	37	18	260237	260237	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	18	260237	260237	C	T	SNP	THOC1	ENST00000581269	human	ensembl	74_37	-1	known	missense	c.257	p.S86N	0.771	NULL	NULL	-	no_errors	THOC1	HGNC	ENSG00000079134				14	0	0	10	2	16.6667
DSG3	0	genome.wustl.edu	37	18	29038467	29038467	+	Silent	SNP	C	C	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	18	29038467	29038467	C	A	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	silent	c.276	p.I92	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				81	0	0	31	21	40.3846
CNDP2	0	genome.wustl.edu	37	18	72168606	72168606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	18	72168606	72168606	C	T	SNP	CNDP2	ENST00000324262	human	ensembl	74_37	+1	known	missense	c.103	p.P35S	1.000	pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP2	HGNC	ENSG00000133313				71	0	0	48	8	14.2857
PPAN-P2RY11	0	genome.wustl.edu	37	19	10224595	10224595	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	19	10224595	10224595	C	T	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	74_37	+1	known	silent	c.1566	p.C522	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_Brix,pfam_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207				46	0	0	32	2	5.88235
NWD1	0	genome.wustl.edu	37	19	16872810	16872810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	19	16872810	16872810	G	A	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.1994	p.R665H	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				67	0	0	38	20	34.4828
CPAMD8	0	genome.wustl.edu	37	19	17088219	17088219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	19	17088219	17088219	C	T	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.1858	p.D620N	0.999	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				105	0	0	40	53	56.9892
FCGBP	0	genome.wustl.edu	37	19	40419757	40419757	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	19	40419757	40419757	A	C	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.3237	p.H1079Q	0.464	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				135	0	0	111	16	12.5984
PRX	0	genome.wustl.edu	37	19	40900837	40900837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	19	40900837	40900837	G	A	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	missense	c.3422	p.A1141V	0.011	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227				52	0	0	36	7	16.2791
AP2A1	0	genome.wustl.edu	37	19	50285901	50285901	+	Silent	SNP	C	C	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	19	50285901	50285901	C	A	SNP	AP2A1	ENST00000354293	human	ensembl	74_37	+1	known	silent	c.393	p.A131	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961				47	0	0	23	3	11.5385
PEG3	0	genome.wustl.edu	37	19	57328018	57328018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	19	57328018	57328018	G	A	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.1792	p.R598C	0.012	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				51	0	0	34	8	19.0476
MED16	0	genome.wustl.edu	37	19	877092	877092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	19	877092	877092	C	T	SNP	MED16	ENST00000325464	human	ensembl	74_37	-1	known	missense	c.1442	p.C481Y	1.000	pfam_Mediator_Med16	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221				37	0	0	25	2	7.40741
MUC16	0	genome.wustl.edu	37	19	9058529	9058529	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	19	9058529	9058529	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.28917	p.D9639	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				88	0	0	59	17	22.3684
MARCO	0	genome.wustl.edu	37	2	119735081	119735081	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	119735081	119735081	A	C	SNP	MARCO	ENST00000327097	human	ensembl	74_37	+1	known	missense	c.648	p.Q216H	0.890	NULL	pfam_Collagen,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	MARCO	HGNC	ENSG00000019169				71	0	0	79	5	5.95238
TPO	0	genome.wustl.edu	37	2	1426885	1426885	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	1426885	1426885	T	C	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	missense	c.163	p.Y55H	0.002	NULL	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				46	0	0	15	22	59.4595
TANC1	0	genome.wustl.edu	37	2	160020039	160020039	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	160020039	160020039	C	G	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	missense	c.928	p.R310G	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				51	0	0	55	4	6.77966
TTN	0	genome.wustl.edu	37	2	179398445	179398445	+	Silent	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	179398445	179398445	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.95193	p.K31731	0.986	pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				45	0	0	46	3	6.12245
TTN	0	genome.wustl.edu	37	2	179600768	179600768	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	179600768	179600768	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.10673	p.K3558T	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				79	0	0	38	50	56.8182
TTN	0	genome.wustl.edu	37	2	179658255	179658255	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	179658255	179658255	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.1412	p.A471V	1.000	pfam_Titin_Z,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				45	0	0	47	13	21.6667
SESTD1	0	genome.wustl.edu	37	2	180047841	180047841	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	180047841	180047841	T	G	SNP	SESTD1	ENST00000428443	human	ensembl	74_37	-1	known	missense	c.130	p.S44R	1.000	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	SESTD1	HGNC	ENSG00000187231				85	0	0	76	7	8.43373
MAP2	0	genome.wustl.edu	37	2	210559425	210559425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	210559425	210559425	G	A	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	missense	c.2531	p.R844H	0.009	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				156	0	0	114	25	17.9856
MAP2	0	genome.wustl.edu	37	2	210560109	210560109	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	210560109	210560109	T	G	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	missense	c.3215	p.L1072R	0.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				112	0	0	65	56	46.281
ABCA12	0	genome.wustl.edu	37	2	215802240	215802240	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	215802240	215802240	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	silent	c.7536	p.Y2512	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				69	0	0	33	29	46.7742
OTOF	0	genome.wustl.edu	37	2	26697430	26697430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	26697430	26697430	C	T	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	missense	c.3239	p.R1080H	1.000	superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				37	0	0	14	23	62.1622
NRXN1	0	genome.wustl.edu	37	2	50573836	50573836	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	50573836	50573836	G	A	SNP	NRXN1	ENST00000342183	human	ensembl	74_37	-1	known	silent	c.252	p.G84	0.986	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Neurexin-like,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				98	0	0	88	5	5.37634
VPS54	0	genome.wustl.edu	37	2	64211037	64211037	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	64211037	64211037	C	G	SNP	VPS54	ENST00000272322	human	ensembl	74_37	-1	known	missense	c.97	p.V33L	1.000	NULL	pfam_Vps54,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS54	HGNC	ENSG00000143952				165	0	0	122	54	30.6818
SPRED2	0	genome.wustl.edu	37	2	65571938	65571938	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	65571938	65571938	C	T	SNP	SPRED2	ENST00000356388	human	ensembl	74_37	-1	known	missense	c.119	p.R40H	1.000	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED2	HGNC	ENSG00000198369				52	0	0	49	5	9.25926
DYSF	0	genome.wustl.edu	37	2	71795434	71795434	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	71795434	71795434	T	C	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.2869	p.W957R	1.000	smart_Peroxin/Ferlin	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				539	0	0	423	132	23.7838
SEMA4C	0	genome.wustl.edu	37	2	97530998	97530998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	97530998	97530998	G	A	SNP	SEMA4C	ENST00000305476	human	ensembl	74_37	-1	known	missense	c.577	p.R193C	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4C	HGNC	ENSG00000168758				65	0	0	45	6	11.7647
INPP4A	0	genome.wustl.edu	37	2	99204053	99204053	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	2	99204053	99204053	C	T	SNP	INPP4A	ENST00000074304	human	ensembl	74_37	+1	known	silent	c.2916	p.Y972	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4A	HGNC	ENSG00000040933				73	0	0	77	10	11.4943
RRBP1	0	genome.wustl.edu	37	20	17601012	17601012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	20	17601012	17601012	G	A	SNP	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	missense	c.3511	p.R1171W	0.096	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844				97	0	0	116	23	16.5468
TGM6	0	genome.wustl.edu	37	20	2397900	2397900	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	20	2397900	2397900	G	A	SNP	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	silent	c.1359	p.V453	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				18	0	0	30	2	6.25
SLC4A11	0	genome.wustl.edu	37	20	3210393	3210393	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	20	3210393	3210393	A	C	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	missense	c.1648	p.L550V	0.000	pfam_HCO3_transpt_C	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				89	0	0	126	7	5.26316
EIF2S2	0	genome.wustl.edu	37	20	32677677	32677677	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	20	32677677	32677677	C	T	SNP	EIF2S2	ENST00000374980	human	ensembl	74_37	-1	known	silent	c.861	p.P287	0.015	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5	-	no_errors	EIF2S2	HGNC	ENSG00000125977				126	0	0	130	36	21.6867
ITCH	0	genome.wustl.edu	37	20	33068998	33068998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	20	33068998	33068998	G	A	SNP	ITCH	ENST00000262650	human	ensembl	74_37	+1	known	missense	c.2203	p.E735K	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	ITCH	HGNC	ENSG00000078747				93	0	0	97	18	15.6522
RTFDC1	0	genome.wustl.edu	37	20	55059238	55059238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	20	55059238	55059238	G	A	SNP	RTFDC1	ENST00000357348	human	ensembl	74_37	+1	known	missense	c.560	p.C187Y	1.000	pfam_Rtf2_RING-finger	pfam_Rtf2_RING-finger	-	no_errors	RTFDC1	HGNC	ENSG00000022277				122	0	0	101	47	31.7568
BMP7	0	genome.wustl.edu	37	20	55746147	55746147	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	20	55746147	55746147	C	T	SNP	BMP7	ENST00000395863	human	ensembl	74_37	-1	known	silent	c.1164	p.P388	0.525	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP7	HGNC	ENSG00000101144				55	0	0	83	16	16.1616
TPTE	0	genome.wustl.edu	37	21	10971337	10971337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	21	10971337	10971337	G	A	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	missense	c.20	p.P7L	0.000	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				101	0	0	54	7	11.4754
TIAM1	0	genome.wustl.edu	37	21	32598232	32598232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	21	32598232	32598232	G	A	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.1619	p.T540I	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				50	0	0	25	2	7.40741
PDE9A	0	genome.wustl.edu	37	21	44179168	44179168	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	21	44179168	44179168	C	G	SNP	PDE9A	ENST00000291539	human	ensembl	74_37	+1	known	missense	c.870	p.I290M	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE9A	HGNC	ENSG00000160191				70	0	0	36	15	29.4118
ISX	0	genome.wustl.edu	37	22	35481614	35481614	+	Silent	SNP	T	T	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	22	35481614	35481614	T	G	SNP	ISX	ENST00000308700	human	ensembl	74_37	+1	known	silent	c.666	p.T222	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ISX	HGNC	ENSG00000175329				187	0	0	106	36	25.3521
SEPT3	0	genome.wustl.edu	37	22	42383244	42383244	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	22	42383244	42383244	C	T	SNP	SEPT3	ENST00000396426	human	ensembl	74_37	+1	known	silent	c.366	p.T122	0.004	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,superfamily_P-loop_NTPase,pirsf_Septin,prints_Septin3	-	no_errors	SEPT3	HGNC	ENSG00000100167				63	0	0	47	16	25.3968
SCUBE1	0	genome.wustl.edu	37	22	43610151	43610151	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	22	43610151	43610151	G	A	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	silent	c.1998	p.C666	1.000	pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Growth_fac_rcpt_N_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				82	0	0	38	10	20.8333
GHRL	0	genome.wustl.edu	37	3	10331490	10331490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	3	10331490	10331490	C	T	SNP	GHRL	ENST00000335542	human	ensembl	74_37	-1	known	missense	c.181	p.D61N	0.053	pfam_Motilin_assoc	pfam_Motilin_assoc,pfam_Motilin_ghrelin,prints_Preproghrelin	-	no_errors	GHRL	HGNC	ENSG00000157017				303	0	0	185	64	25.7028
ADCY5	0	genome.wustl.edu	37	3	123166565	123166565	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	3	123166565	123166565	G	A	SNP	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	silent	c.828	p.A276	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				29	0	0	17	5	22.7273
ANKRD28	0	genome.wustl.edu	37	3	15736313	15736313	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	3	15736313	15736313	T	A	SNP	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	missense	c.1703	p.E568V	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560				86	0	0	27	39	59.0909
SMC4	0	genome.wustl.edu	37	3	160137276	160137276	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	3	160137276	160137276	A	G	SNP	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	missense	c.1802	p.D601G	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_SMC_hinge	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				88	0	0	57	22	27.8481
GP5	0	genome.wustl.edu	37	3	194118890	194118890	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	3	194118890	194118890	G	A	SNP	GP5	ENST00000323007	human	ensembl	74_37	-1	known	missense	c.122	p.A41V	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732				54	0	0	36	8	18.1818
ZNF662	0	genome.wustl.edu	37	3	42956441	42956441	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	3	42956441	42956441	G	A	SNP	ZNF662	ENST00000328199	human	ensembl	74_37	+1	known	silent	c.954	p.T318	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF662	HGNC	ENSG00000182983				76	0	0	48	17	26.1538
QRICH1	0	genome.wustl.edu	37	3	49094328	49094328	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	3	49094328	49094328	C	T	SNP	QRICH1	ENST00000357496	human	ensembl	74_37	-1	known	silent	c.1305	p.Q435	0.956	NULL	pfam_DUF3504,superfamily_DEATH-like_dom	-	no_errors	QRICH1	HGNC	ENSG00000198218				83	0	0	53	3	5.35714
FAM19A4	0	genome.wustl.edu	37	3	68802041	68802041	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	3	68802041	68802041	T	G	SNP	FAM19A4	ENST00000295569	human	ensembl	74_37	-1	known	missense	c.259	p.T87P	1.000	pfam_Chemokine-like_FAM19A2	pfam_Chemokine-like_FAM19A2	-	no_errors	FAM19A4	HGNC	ENSG00000163377				131	0	0	67	17	20.2381
OR5H1	0	genome.wustl.edu	37	3	97851635	97851635	+	Silent	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	3	97851635	97851635	T	C	SNP	OR5H1	ENST00000354565	human	ensembl	74_37	+1	known	silent	c.94	p.L32	0.785	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192				93	0	0	37	15	28.8462
CTSO	0	genome.wustl.edu	37	4	156863522	156863522	+	Silent	SNP	T	T	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	4	156863522	156863522	T	G	SNP	CTSO	ENST00000433477	human	ensembl	74_37	-1	known	silent	c.331	p.R111	0.989	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSO	HGNC	ENSG00000256043				116	0	0	61	64	51.2
TLL1	0	genome.wustl.edu	37	4	166929130	166929130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	4	166929130	166929130	G	A	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.847	p.E283K	1.000	pfam_Peptidase_M12A,smart_Peptidase_Metallo,pirsf_BMP_1/tolloid-like	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				92	0	0	35	78	69.0265
DDX60L	0	genome.wustl.edu	37	4	169362498	169362498	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	4	169362498	169362498	C	T	SNP	DDX60L	ENST00000260184	human	ensembl	74_37	-1	known	silent	c.1284	p.S428	0.001	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381				68	0	0	76	6	7.31707
NSG1	0	genome.wustl.edu	37	4	4419002	4419002	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	4	4419002	4419002	C	T	SNP	NSG1	ENST00000397958	human	ensembl	74_37	+1	known	missense	c.398	p.A133V	0.880	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	-	no_errors	NSG1	Uniprot_gn	ENSG00000168824				120	0	0	63	28	30.7692
KCTD8	0	genome.wustl.edu	37	4	44449752	44449752	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	4	44449752	44449752	C	G	SNP	KCTD8	ENST00000360029	human	ensembl	74_37	-1	known	missense	c.789	p.E263D	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD8	HGNC	ENSG00000183783				36	0	0	37	3	7.5
EVC2	0	genome.wustl.edu	37	4	5624326	5624326	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	4	5624326	5624326	G	A	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	silent	c.2439	p.D813	0.001	NULL	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				59	0	0	33	6	15.3846
EXOC1	0	genome.wustl.edu	37	4	56765938	56765938	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	4	56765938	56765938	G	A	SNP	EXOC1	ENST00000346134	human	ensembl	74_37	+1	known	missense	c.2225	p.R742Q	1.000	pfam_Exocyst_Exoc1/SEC3	pfam_Exocyst_Exoc1/SEC3	-	no_errors	EXOC1	HGNC	ENSG00000090989				79	0	0	53	11	17.1875
GNRHR	0	genome.wustl.edu	37	4	68619666	68619666	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	4	68619666	68619666	A	G	SNP	GNRHR	ENST00000226413	human	ensembl	74_37	-1	known	missense	c.388	p.F130L	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GphnRH_fam_rcpt,prints_GPCR_Rhodpsn,prints_Vasoprsn_rcpt	-	no_errors	GNRHR	HGNC	ENSG00000109163				63	0	0	20	65	76.4706
DNAH5	0	genome.wustl.edu	37	5	13771038	13771038	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	5	13771038	13771038	T	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.9425	p.K3142T	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				64	0	0	54	8	12.9032
SIL1	0	genome.wustl.edu	37	5	138456726	138456726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	5	138456726	138456726	G	A	SNP	SIL1	ENST00000265195	human	ensembl	74_37	-1	known	missense	c.242	p.P81L	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	SIL1	HGNC	ENSG00000120725				85	0	0	48	11	18.6441
PCDHB13	0	genome.wustl.edu	37	5	140594778	140594778	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	5	140594778	140594778	G	A	SNP	PCDHB13	ENST00000341948	human	ensembl	74_37	+1	known	silent	c.1083	p.A361	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372				280	0	0	158	36	18.5567
GABRP	0	genome.wustl.edu	37	5	170239126	170239126	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	5	170239126	170239126	G	A	SNP	GABRP	ENST00000265294	human	ensembl	74_37	+1	known	missense	c.1187	p.R396Q	1.000	superfamily_Neurotrans-gated_channel_TM,prints_GABAAp_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAp_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRP	HGNC	ENSG00000094755				75	0	0	49	6	10.9091
PRDM9	0	genome.wustl.edu	37	5	23510114	23510114	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	5	23510114	23510114	A	C	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.279	p.E93D	1.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				60	0	0	33	4	10.8108
RICTOR	0	genome.wustl.edu	37	5	38950621	38950621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	5	38950621	38950621	C	T	SNP	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	missense	c.3329	p.R1110H	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				152	0	0	140	10	6.66667
TTC37	0	genome.wustl.edu	37	5	94850562	94850562	+	Silent	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	5	94850562	94850562	T	C	SNP	TTC37	ENST00000358746	human	ensembl	74_37	-1	known	silent	c.2700	p.G900	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677				47	0	0	37	2	5.12821
LAMA2	0	genome.wustl.edu	37	6	129634198	129634198	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	6	129634198	129634198	A	T	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	nonsense	c.3367	p.K1123*	0.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				105	0	0	86	11	11.3402
RAET1E	0	genome.wustl.edu	37	6	150210686	150210686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	6	150210686	150210686	G	A	SNP	RAET1E	ENST00000392270	human	ensembl	74_37	-1	known	missense	c.314	p.S105L	0.002	NULL	superfamily_MHC_I/II-like_Ag-recog	-	no_errors	RAET1E	HGNC	ENSG00000164520				98	0	0	62	149	70.6161
SCAND3	0	genome.wustl.edu	37	6	28539970	28539970	+	Silent	SNP	G	G	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	6	28539970	28539970	G	C	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	silent	c.3696	p.T1232	0.997	superfamily_RNaseH-like_dom	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				52	0	0	35	14	28.5714
SCAND3	0	genome.wustl.edu	37	6	28540574	28540574	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	6	28540574	28540574	G	C	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.3092	p.S1031C	0.992	superfamily_RNaseH-like_dom	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				53	0	0	33	11	25
OR5V1	0	genome.wustl.edu	37	6	29323795	29323795	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	6	29323795	29323795	A	G	SNP	OR5V1	ENST00000377154	human	ensembl	74_37	-1	known	missense	c.178	p.Y60H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5V1	HGNC	ENSG00000243729				148	0	0	133	37	21.7647
PACSIN1	0	genome.wustl.edu	37	6	34499470	34499470	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	6	34499470	34499470	C	T	SNP	PACSIN1	ENST00000244458	human	ensembl	74_37	+1	known	silent	c.1131	p.G377	0.976	NULL	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN1	HGNC	ENSG00000124507				215	0	0	104	83	44.385
USP49	0	genome.wustl.edu	37	6	41773985	41773985	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	6	41773985	41773985	G	A	SNP	USP49	ENST00000373009	human	ensembl	74_37	-1	known	missense	c.737	p.P246L	0.967	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP49	HGNC	ENSG00000164663				54	0	0	49	7	12.5
AARS2	0	genome.wustl.edu	37	6	44268376	44268376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	6	44268376	44268376	C	T	SNP	AARS2	ENST00000244571	human	ensembl	74_37	-1	known	missense	c.2866	p.G956S	1.000	tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608				104	0	0	75	19	20.2128
SYNCRIP	0	genome.wustl.edu	37	6	86346762	86346762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	6	86346762	86346762	G	A	SNP	SYNCRIP	ENST00000369622	human	ensembl	74_37	-1	known	missense	c.589	p.P197S	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316				79	0	0	84	20	19.2308
POU3F2	0	genome.wustl.edu	37	6	99284012	99284012	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	6	99284012	99284012	C	T	SNP	POU3F2	ENST00000328345	human	ensembl	74_37	+1	known	silent	c.1263	p.G421	1.000	pirsf_Transcription_factor_POU,superfamily_Homeodomain-like	pirsf_Transcription_factor_POU,pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F2	HGNC	ENSG00000184486				78	0	0	89	6	6.31579
DPY19L2P2	0	genome.wustl.edu	37	7	102883486	102883486	+	RNA	SNP	C	C	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	7	102883486	102883486	C	G	SNP	DPY19L2P2	ENST00000312132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	DPY19L2P2	HGNC	ENSG00000170629				20	0	0	17	2	10.5263
DPY19L2P2	0	genome.wustl.edu	37	7	102883490	102883490	+	RNA	SNP	A	A	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	7	102883490	102883490	A	C	SNP	DPY19L2P2	ENST00000312132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.959	-	-	-	no_errors	DPY19L2P2	HGNC	ENSG00000170629				17	0	0	12	2	14.2857
DOCK4	0	genome.wustl.edu	37	7	111509683	111509683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	7	111509683	111509683	C	T	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	missense	c.2056	p.V686M	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				63	0	0	18	26	59.0909
BBS9	0	genome.wustl.edu	37	7	33397540	33397540	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	7	33397540	33397540	A	T	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	missense	c.1626	p.K542N	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507				107	0	0	104	18	14.7541
ABCA13	0	genome.wustl.edu	37	7	48314870	48314870	+	Silent	SNP	A	A	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	7	48314870	48314870	A	G	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	silent	c.5607	p.E1869	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				37	0	0	53	3	5.35714
SNORA15	0	genome.wustl.edu	37	7	56128294	56128294	+	RNA	SNP	A	A	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	7	56128294	56128294	A	G	SNP	SNORA15	ENST00000384439	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	SNORA15	HGNC	ENSG00000207168				21	0	0	30	2	6.25
MAGI2	0	genome.wustl.edu	37	7	77973216	77973216	+	Silent	SNP	T	T	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	7	77973216	77973216	T	A	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	silent	c.1287	p.L429	0.963	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				54	0	0	35	13	27.0833
ASAP1	0	genome.wustl.edu	37	8	131073067	131073067	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	8	131073067	131073067	G	C	SNP	ASAP1	ENST00000357668	human	ensembl	74_37	-1	known	missense	c.2950	p.P984A	1.000	prints_p67phox	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_errors	ASAP1	HGNC	ENSG00000153317				134	0	0	125	33	20.8861
SGCZ	0	genome.wustl.edu	37	8	13959935	13959935	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	8	13959935	13959935	A	C	SNP	SGCZ	ENST00000382080	human	ensembl	74_37	-1	known	missense	c.694	p.F232V	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCZ	HGNC	ENSG00000185053				70	0	0	36	9	20
SGCZ	0	genome.wustl.edu	37	8	13965704	13965704	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	8	13965704	13965704	C	T	SNP	SGCZ	ENST00000382080	human	ensembl	74_37	-1	known	silent	c.588	p.P196	0.934	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCZ	HGNC	ENSG00000185053				61	0	0	37	8	17.7778
RPL8	0	genome.wustl.edu	37	8	146015800	146015800	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	8	146015800	146015800	C	T	SNP	RPL8	ENST00000262584	human	ensembl	74_37	-1	known	silent	c.555	p.A185	0.994	pfam_Ribosomal_L2_C,superfamily_Translation_prot_SH3-like,pirsf_Ribosomal_L2	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Ribosomal_L2	-	no_errors	RPL8	HGNC	ENSG00000161016				106	0	0	114	9	7.31707
FBXO16	0	genome.wustl.edu	37	8	28218664	28218664	+	Silent	SNP	G	G	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	8	28218664	28218664	G	A	SNP	FBXO16	ENST00000521548	human	ensembl	74_37	-1	known	silent	c.879	p.S293	0.001	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO16	HGNC	ENSG00000214050				58	0	0	38	11	22.449
EIF4EBP1	0	genome.wustl.edu	37	8	37914619	37914619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	8	37914619	37914619	C	T	SNP	EIF4EBP1	ENST00000338825	human	ensembl	74_37	+1	known	missense	c.166	p.R56W	1.000	pfam_EIF4EBP	pfam_EIF4EBP	-	no_errors	EIF4EBP1	HGNC	ENSG00000187840				113	0	0	60	25	29.4118
AP3M2	0	genome.wustl.edu	37	8	42019858	42019858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	8	42019858	42019858	C	T	SNP	AP3M2	ENST00000174653	human	ensembl	74_37	+1	known	missense	c.505	p.R169W	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M2	HGNC	ENSG00000070718				301	3	0.986842	177	73	29.2
GRIN3A	0	genome.wustl.edu	37	9	104449347	104449347	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	9	104449347	104449347	A	C	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.835	p.F279V	1.000	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				122	0	0	126	12	8.69565
FKBP15	0	genome.wustl.edu	37	9	115955819	115955819	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	9	115955819	115955819	G	C	SNP	FKBP15	ENST00000238256	human	ensembl	74_37	-1	known	missense	c.1018	p.L340V	0.996	NULL	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321				10	0	0	5	7	58.3333
NUP188	0	genome.wustl.edu	37	9	131749930	131749930	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	9	131749930	131749930	C	G	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.2327	p.T776R	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				69	0	0	38	30	44.1176
IFNA13	0	genome.wustl.edu	37	9	21367555	21367555	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	9	21367555	21367555	G	C	SNP	IFNA13	ENST00000449498	human	ensembl	74_37	-1	known	missense	c.455	p.T152S	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA13	HGNC	ENSG00000233816				125	0	0	29	16	35.5556
GLDC	0	genome.wustl.edu	37	9	6610288	6610288	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	9	6610288	6610288	T	C	SNP	GLDC	ENST00000321612	human	ensembl	74_37	-1	known	missense	c.539	p.Q180R	1.000	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445				38	0	0	15	9	37.5
MSL3	0	genome.wustl.edu	37	X	11786716	11786716	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	X	11786716	11786716	C	T	SNP	MSL3	ENST00000312196	human	ensembl	74_37	+1	known	missense	c.1196	p.S399F	1.000	pfam_MRG_dom	pfam_MRG_dom,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302				48	0	0	34	20	37.037
GPR101	0	genome.wustl.edu	37	X	136113611	136113611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	X	136113611	136113611	C	T	SNP	GPR101	ENST00000298110	human	ensembl	74_37	-1	known	missense	c.223	p.V75I	0.649	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370				37	0	0	17	14	45.1613
BGN	0	genome.wustl.edu	37	X	152773819	152773819	+	Silent	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	X	152773819	152773819	C	T	SNP	BGN	ENST00000331595	human	ensembl	74_37	+1	known	silent	c.1023	p.P341	0.013	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	BGN	HGNC	ENSG00000182492				63	0	0	33	32	49.2308
KDM6A	0	genome.wustl.edu	37	X	44922785	44922785	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	X	44922785	44922785	G	C	SNP	KDM6A	ENST00000382899	human	ensembl	74_37	+1	known	missense	c.1667	p.R556T	1.000	NULL	pfam_JmjC_dom,pfam_TPR_1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050				36	0	0	32	4	11.1111
STARD8	0	genome.wustl.edu	37	X	67941951	67941951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	X	67941951	67941951	C	T	SNP	STARD8	ENST00000374599	human	ensembl	74_37	+1	known	missense	c.2522	p.A841V	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052				28	0	0	16	6	27.2727
PJA1	0	genome.wustl.edu	37	X	68382337	68382337	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	X	68382337	68382337	T	A	SNP	PJA1	ENST00000361478	human	ensembl	74_37	-1	known	nonsense	c.745	p.K249*	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191				56	0	0	14	18	56.25
PJA1	0	genome.wustl.edu	37	X	68382338	68382338	+	Silent	SNP	T	T	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	X	68382338	68382338	T	A	SNP	PJA1	ENST00000361478	human	ensembl	74_37	-1	known	silent	c.744	p.S248	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191				57	0	0	12	18	60
CPXCR1	0	genome.wustl.edu	37	X	88009038	88009038	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	X	88009038	88009038	T	A	SNP	CPXCR1	ENST00000276127	human	ensembl	74_37	+1	known	missense	c.623	p.L208H	0.001	NULL	pfscan_Znf_C2H2	-	no_errors	CPXCR1	HGNC	ENSG00000147183				27	0	0	10	4	28.5714
LAMC2	0	genome.wustl.edu	37	1	183206593	183206595	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	183206593	183206595	AAG	-	DEL	LAMC2	ENST00000264144	human	ensembl	74_37	+1	known	in_frame_del	c.2708_2710	p.E905in_frame_del	1.000:1.000:1.000	NULL	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085				67	0	0	59	11	15.7143
CCDC27	0	genome.wustl.edu	37	1	3680286	3680288	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	1	3680286	3680288	ACA	-	DEL	CCDC27	ENST00000294600	human	ensembl	74_37	+1	known	in_frame_del	c.1338_1340	p.Q449in_frame_del	0.000:0.029:0.031	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592				174	0	0	87	51	36.9565
CTCF	0	genome.wustl.edu	37	16	67645936	67645936	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	16	67645936	67645936	C	-	DEL	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	frame_shift_del	c.864	p.H288fs	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				127	0	0	85	24	22.0183
GRM4	0	genome.wustl.edu	37	6	34026856	34026858	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-10A-01D-2053-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67d6a830-41d5-46d2-9503-58ec158c29a7	b65a86ec-96ea-4d0e-890e-43d5645adf5d	6	34026856	34026858	AGA	-	DEL	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	in_frame_del	c.922_920	p.F307in_frame_del	1.000:1.000:1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_4	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493				66	0	0	45	5	10
