Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AMY2B	0	genome.wustl.edu	37	1	104112972	104112972	+	RNA	SNP	G	G	C			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	104112972	104112972	G	C	SNP	AMY2B	ENST00000491397	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AMY2B	HGNC	ENSG00000240038				62	0	0	38	20	34.4828
NBPF10	0	genome.wustl.edu	37	1	145327548	145327548	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	145327548	145327548	A	G	SNP	NBPF10	ENST00000342960	human	ensembl	74_37	+1	known	missense	c.4105	p.N1369D	0.000	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF10	HGNC	ENSG00000163386				10	0	0	3	2	40
OR6Y1	0	genome.wustl.edu	37	1	158517584	158517584	+	Silent	SNP	A	A	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	158517584	158517584	A	T	SNP	OR6Y1	ENST00000302617	human	ensembl	74_37	-1	known	silent	c.312	p.T104	0.994	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6Y1	HGNC	ENSG00000197532				99	0	0	55	43	43.8776
NBPF1	0	genome.wustl.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	16918653	16918653	C	T	SNP	NBPF1	ENST00000392963	human	ensembl	74_37	-1	known	splice_site	c.1+1	e0+1	0.202	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481				47	0	0	53	4	7.01754
CACNA1E	0	genome.wustl.edu	37	1	181724450	181724450	+	Silent	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	181724450	181724450	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	silent	c.3906	p.I1302	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				133	0	0	89	48	35.0365
RAB3GAP2	0	genome.wustl.edu	37	1	220357408	220357408	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	220357408	220357408	A	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	missense	c.1968	p.D656E	0.007	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				23	0	0	28	7	20
RCC1	0	genome.wustl.edu	37	1	28857064	28857064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	28857064	28857064	C	T	SNP	RCC1	ENST00000373831	human	ensembl	74_37	+1	known	missense	c.103	p.P35S	0.145	NULL	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCC1	HGNC	ENSG00000180198				14	0	0	6	3	33.3333
YTHDF2	0	genome.wustl.edu	37	1	29070218	29070218	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	29070218	29070218	A	G	SNP	YTHDF2	ENST00000373812	human	ensembl	74_37	+1	known	missense	c.1436	p.Y479C	1.000	pfam_YTH_domain,pfscan_YTH_domain	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF2	HGNC	ENSG00000198492				52	0	0	42	23	35.3846
STK40	0	genome.wustl.edu	37	1	36809854	36809854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	36809854	36809854	G	A	SNP	STK40	ENST00000373130	human	ensembl	74_37	-1	known	missense	c.766	p.R256C	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK40	HGNC	ENSG00000196182				111	0	0	41	26	38.806
PTPRF	0	genome.wustl.edu	37	1	44083581	44083581	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	44083581	44083581	G	A	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	missense	c.4370	p.R1457Q	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949				34	0	0	22	2	8.33333
C1orf177	0	genome.wustl.edu	37	1	55277794	55277794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	55277794	55277794	C	T	SNP	C1orf177	ENST00000371273	human	ensembl	74_37	+1	known	missense	c.694	p.R232C	0.201	NULL	NULL	-	no_errors	C1orf177	HGNC	ENSG00000162398				97	0	0	91	5	5.20833
MRVI1	0	genome.wustl.edu	37	11	10673689	10673689	+	Silent	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	11	10673689	10673689	G	A	SNP	MRVI1	ENST00000421747	human	ensembl	74_37	-1	known	silent	c.81	p.D27	0.976	NULL	pfam_MRVI1	-	no_errors	MRVI1	HGNC	ENSG00000072952				19	0	0	21	6	22.2222
CUL5	0	genome.wustl.edu	37	11	107960310	107960310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	11	107960310	107960310	C	T	SNP	CUL5	ENST00000393094	human	ensembl	74_37	+1	known	missense	c.1403	p.A468V	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266				20	0	0	14	12	46.1538
DSCAML1	0	genome.wustl.edu	37	11	117299181	117299181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	11	117299181	117299181	C	T	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.6205	p.E2069K	0.985	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				30	0	0	21	15	41.6667
METTL15	0	genome.wustl.edu	37	11	28318379	28318379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	11	28318379	28318379	G	A	SNP	METTL15	ENST00000303459	human	ensembl	74_37	+1	known	missense	c.679	p.G227R	1.000	pfam_RsmH,superfamily_SAM-dep_MeTrfase_MraW_recog,tigrfam_RsmH	pfam_RsmH,superfamily_SAM-dep_MeTrfase_MraW_recog,tigrfam_RsmH	-	no_errors	METTL15	HGNC	ENSG00000169519				77	0	0	61	33	35.1064
ANO9	0	genome.wustl.edu	37	11	419621	419621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	11	419621	419621	C	T	SNP	ANO9	ENST00000332826	human	ensembl	74_37	-1	known	missense	c.1895	p.R632H	0.015	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101				65	0	0	21	14	40
OR10A4	0	genome.wustl.edu	37	11	6898608	6898608	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	11	6898608	6898608	G	T	SNP	OR10A4	ENST00000379829	human	ensembl	74_37	+1	known	missense	c.730	p.A244S	0.984	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A4	HGNC	ENSG00000170782				84	0	0	79	7	8.13953
ALDH1L2	0	genome.wustl.edu	37	12	105433512	105433512	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	12	105433512	105433512	A	G	SNP	ALDH1L2	ENST00000258494	human	ensembl	74_37	-1	known	missense	c.2024	p.I675T	0.965	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010				130	0	0	71	40	36.036
TMEM132D	0	genome.wustl.edu	37	12	129563254	129563254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	12	129563254	129563254	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.1940	p.S647L	0.999	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				89	0	0	48	33	40.7407
TMEM132D	0	genome.wustl.edu	37	12	130185232	130185232	+	Silent	SNP	G	G	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	12	130185232	130185232	G	T	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	silent	c.91	p.R31	0.994	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				51	0	0	31	9	22.5
TMCO3	0	genome.wustl.edu	37	13	114193756	114193756	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	13	114193756	114193756	G	A	SNP	TMCO3	ENST00000434316	human	ensembl	74_37	+1	known	missense	c.1624	p.E542K	1.000	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403				54	0	0	39	21	35
SPG11	0	genome.wustl.edu	37	15	44913993	44913993	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	15	44913993	44913993	G	A	SNP	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	nonsense	c.2584	p.Q862*	0.953	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133				66	0	0	56	18	24.3243
HCN4	0	genome.wustl.edu	37	15	73617682	73617682	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	15	73617682	73617682	T	A	SNP	HCN4	ENST00000261917	human	ensembl	74_37	-1	known	missense	c.1694	p.D565V	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622				154	0	0	73	31	29.8077
CHRNA3	0	genome.wustl.edu	37	15	78894525	78894525	+	Silent	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	15	78894525	78894525	G	A	SNP	CHRNA3	ENST00000326828	human	ensembl	74_37	-1	known	silent	c.459	p.A153	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA3	HGNC	ENSG00000080644				83	0	0	46	19	29.2308
NARFL	0	genome.wustl.edu	37	16	780985	780985	+	Silent	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	16	780985	780985	C	T	SNP	NARFL	ENST00000251588	human	ensembl	74_37	-1	known	silent	c.1050	p.Q350	1.000	pfam_Fe_hydrogenase_lsu_C,superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARFL	HGNC	ENSG00000103245				90	0	0	63	9	12.5
ETV4	0	genome.wustl.edu	37	17	41606033	41606033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	17	41606033	41606033	G	A	SNP	ETV4	ENST00000319349	human	ensembl	74_37	-1	known	missense	c.1309	p.R437C	1.000	NULL	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,prints_Ets_dom,pfscan_Ets_dom	-	no_errors	ETV4	HGNC	ENSG00000175832				65	0	0	53	5	8.62069
KIF2B	0	genome.wustl.edu	37	17	51900853	51900853	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	17	51900853	51900853	C	G	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.459	p.I153M	0.948	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				75	0	0	56	3	5.08475
SMAD4	0	genome.wustl.edu	37	18	48591925	48591925	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	18	48591925	48591925	G	A	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	missense	c.1088	p.C363Y	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				56	0	0	17	15	46.875
ZNF607	0	genome.wustl.edu	37	19	38190612	38190612	+	Silent	SNP	T	T	C			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	19	38190612	38190612	T	C	SNP	ZNF607	ENST00000355202	human	ensembl	74_37	-1	known	silent	c.420	p.E140	0.972	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182				76	0	0	89	41	31.5385
FCGBP	0	genome.wustl.edu	37	19	40389651	40389651	+	Splice_Site	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	19	40389651	40389651	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	splice_site	c.8530+1	e18+1	0.741	-	-	-	no_errors	FCGBP	HGNC	ENSG00000090920				37	0	0	36	6	14.2857
KLC3	0	genome.wustl.edu	37	19	45854575	45854575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	19	45854575	45854575	G	A	SNP	KLC3	ENST00000470402	human	ensembl	74_37	+1	known	missense	c.1517	p.R506Q	0.560	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC3	HGNC	ENSG00000104892				147	0	0	113	44	28.0255
ZNF606	0	genome.wustl.edu	37	19	58489997	58489997	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	19	58489997	58489997	T	C	SNP	ZNF606	ENST00000341164	human	ensembl	74_37	-1	known	missense	c.2051	p.Q684R	0.782	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704				61	0	0	78	6	7.14286
MZF1	0	genome.wustl.edu	37	19	59074541	59074541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	19	59074541	59074541	C	T	SNP	MZF1	ENST00000215057	human	ensembl	74_37	-1	known	missense	c.1103	p.R368H	0.146	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	MZF1	HGNC	ENSG00000099326				24	0	0	20	2	9.09091
LRP2	0	genome.wustl.edu	37	2	170033000	170033000	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	2	170033000	170033000	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.10492	p.R3498C	0.717	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				55	0	0	42	26	38.2353
SIGLEC1	0	genome.wustl.edu	37	20	3686512	3686512	+	Silent	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	20	3686512	3686512	G	A	SNP	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	silent	c.585	p.G195	0.000	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				84	0	0	95	30	24
KCNG1	0	genome.wustl.edu	37	20	49626831	49626831	+	Silent	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	20	49626831	49626831	C	T	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	silent	c.45	p.A15	0.996	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				51	0	0	39	6	13.3333
YWHAH	0	genome.wustl.edu	37	22	32352435	32352435	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	22	32352435	32352435	T	G	SNP	YWHAH	ENST00000248975	human	ensembl	74_37	+1	known	missense	c.397	p.Y133D	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAH	HGNC	ENSG00000128245				29	0	0	25	13	34.2105
SGSM3	0	genome.wustl.edu	37	22	40800320	40800320	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	22	40800320	40800320	G	A	SNP	SGSM3	ENST00000248929	human	ensembl	74_37	+1	known	missense	c.227	p.R76Q	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359				67	0	0	61	27	30.6818
ACO2	0	genome.wustl.edu	37	22	41924552	41924552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	22	41924552	41924552	G	A	SNP	ACO2	ENST00000216254	human	ensembl	74_37	+1	known	missense	c.2278	p.E760K	1.000	superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412				49	0	0	38	18	32.1429
MBD4	0	genome.wustl.edu	37	3	129151293	129151293	+	Silent	SNP	T	T	C			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	3	129151293	129151293	T	C	SNP	MBD4	ENST00000507208	human	ensembl	74_37	-1	novel	silent	c.1718	p.*573	0.004	NULL	pfam_Methyl_CpG_DNA-bd,pfam_HhH-GPD_domain,superfamily_DNA-bd_dom,superfamily_DNA_glycosylase,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MBD4,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD4	HGNC	ENSG00000129071				36	0	0	55	3	5.17241
FAM194A	0	genome.wustl.edu	37	3	150421527	150421527	+	Silent	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	3	150421527	150421527	C	T	SNP	FAM194A	ENST00000295910	human	ensembl	74_37	-1	known	silent	c.159	p.E53	0.003	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645				15	0	0	19	2	9.52381
P2RY14	0	genome.wustl.edu	37	3	150931958	150931958	+	Silent	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	3	150931958	150931958	G	A	SNP	P2RY14	ENST00000309170	human	ensembl	74_37	-1	known	silent	c.147	p.Y49	0.000	prints_P2Y14_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_P2Y14_rcpt,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	P2RY14	HGNC	ENSG00000174944				114	0	0	105	34	24.4604
ITPR1	0	genome.wustl.edu	37	3	4699844	4699844	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	3	4699844	4699844	C	T	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.988	p.R330W	1.000	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				78	0	0	79	14	15.0538
RHOA	0	genome.wustl.edu	37	3	49412907	49412907	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	3	49412907	49412907	A	C	SNP	RHOA	ENST00000418115	human	ensembl	74_37	-1	known	missense	c.116	p.F39C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560				141	1	0.704225	103	88	46.0733
KIAA1109	0	genome.wustl.edu	37	4	123265668	123265668	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	4	123265668	123265668	G	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.12685	p.V4229L	0.999	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				110	0	0	97	41	29.7101
ANTXR2	0	genome.wustl.edu	37	4	80975471	80975471	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	4	80975471	80975471	G	C	SNP	ANTXR2	ENST00000307333	human	ensembl	74_37	-1	known	missense	c.591	p.F197L	1.000	pirsf_Anthrax_toxin_rcpt,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_C,pfam_Anthrax_toxin_rcpt_extracel,pfam_VWF_A,superfamily_Ig_E-set,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR2	HGNC	ENSG00000163297				52	0	0	59	28	32.1839
ENSG00000227304	0	genome.wustl.edu	37	4	83417185	83417185	+	RNA	SNP	G	G	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	4	83417185	83417185	G	T	SNP	ENSG00000227304	ENST00000488045	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-791G16.2	Clone_based_vega_gene	ENSG00000227304				34	0	0	18	11	37.931
FEM1C	0	genome.wustl.edu	37	5	114878880	114878880	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	5	114878880	114878880	T	C	SNP	FEM1C	ENST00000274457	human	ensembl	74_37	-1	known	missense	c.311	p.N104S	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1C	HGNC	ENSG00000145780				52	0	0	50	6	10.7143
KIF3A	0	genome.wustl.edu	37	5	132056301	132056301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	5	132056301	132056301	G	A	SNP	KIF3A	ENST00000378735	human	ensembl	74_37	-1	known	missense	c.616	p.R206C	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF3A	HGNC	ENSG00000131437				28	0	0	19	6	24
OLIG3	0	genome.wustl.edu	37	6	137815222	137815222	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	6	137815222	137815222	T	C	SNP	OLIG3	ENST00000367734	human	ensembl	74_37	-1	known	missense	c.86	p.H29R	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	OLIG3	HGNC	ENSG00000177468				105	1	0.943396	49	3	5.76923
MDC1	0	genome.wustl.edu	37	6	30680092	30680092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	6	30680092	30680092	C	T	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.1627	p.V543M	0.096	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				59	0	0	47	20	29.8507
SSPO	0	genome.wustl.edu	37	7	149486303	149486303	+	RNA	SNP	C	C	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	7	149486303	149486303	C	A	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.031	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				40	0	0	32	2	5.88235
ENSG00000267970	0	genome.wustl.edu	37	7	48887559	48887559	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	7	48887559	48887559	G	A	SNP	ENSG00000267970	ENST00000596947	human	ensembl	74_37	+1	known	missense	c.59	p.R20Q	0.090	NULL	NULL	-	no_errors	AC004899.1	Clone_based_ensembl_gene	ENSG00000267970				26	0	0	22	13	37.1429
PON1	0	genome.wustl.edu	37	7	94928393	94928393	+	Silent	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	7	94928393	94928393	G	A	SNP	PON1	ENST00000222381	human	ensembl	74_37	-1	known	silent	c.931	p.L311	0.985	NULL	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase1	-	no_errors	PON1	HGNC	ENSG00000005421				106	0	0	84	43	33.8583
CSMD3	0	genome.wustl.edu	37	8	113243795	113243795	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	8	113243795	113243795	G	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.10807	p.Q3603K	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				106	0	0	126	15	10.6383
ADAM28	0	genome.wustl.edu	37	8	24207414	24207414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	8	24207414	24207414	G	A	SNP	ADAM28	ENST00000397649	human	ensembl	74_37	+1	known	missense	c.1273	p.G425S	0.110	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980				154	0	0	130	48	26.9663
OR1L3	0	genome.wustl.edu	37	9	125437839	125437839	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	9	125437839	125437839	T	C	SNP	OR1L3	ENST00000304820	human	ensembl	74_37	+1	known	missense	c.431	p.L144P	0.050	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L3	HGNC	ENSG00000171481				242	0	0	86	180	67.6692
MRPL41	0	genome.wustl.edu	37	9	140446797	140446797	+	Silent	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	9	140446797	140446797	C	T	SNP	MRPL41	ENST00000371443	human	ensembl	74_37	+1	known	silent	c.264	p.A88	0.360	pfam_Ribosomal_L27/L41_mit	pfam_Ribosomal_L27/L41_mit	-	no_errors	MRPL41	HGNC	ENSG00000182154				19	0	0	6	8	57.1429
CACNA1B	0	genome.wustl.edu	37	9	140850187	140850187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	9	140850187	140850187	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.1108	p.R370C	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				16	0	0	12	3	20
IFNA10	0	genome.wustl.edu	37	9	21206898	21206898	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	9	21206898	21206898	C	G	SNP	IFNA10	ENST00000357374	human	ensembl	74_37	-1	known	missense	c.199	p.D67H	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA10	HGNC	ENSG00000186803				151	0	0	51	92	64.3357
ARID1A	0	genome.wustl.edu	37	1	27100199	27100200	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	1	27100199	27100200	-	G	INS	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_ins	c.3995_3996	p.Q1333fs	1.000:1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				72	0	0	81	32	28.3186
ITGAV	0	genome.wustl.edu	37	2	187540409	187540409	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	2	187540409	187540409	G	-	DEL	ITGAV	ENST00000261023	human	ensembl	74_37	+1	known	frame_shift_del	c.2785	p.V929fs	0.869	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448				125	0	0	62	75	54.7445
BIK	0	genome.wustl.edu	37	22	43525245	43525247	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-BR-7722-01A-31D-2201-08	TCGA-BR-7722-10A-01D-2201-08	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fa9cfba-0f49-47d0-ab54-9dd2144e0a73	1fd04123-dbaa-4c8c-9c89-b9cb1a30c14c	22	43525245	43525247	GCT	-	DEL	BIK	ENST00000216115	human	ensembl	74_37	+1	known	in_frame_del	c.417_419	p.L143in_frame_del	0.001:0.000:0.000	pfam_Bcl2-int_killer	pfam_Bcl2-int_killer	-	no_errors	BIK	HGNC	ENSG00000100290				77	0	0	79	5	5.95238
