Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
C1orf194	0	genome.wustl.edu	37	1	109650650	109650650	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	109650650	109650650	A	T	SNP	C1orf194	ENST00000369948	human	ensembl	74_37	-1	known	missense	c.91	p.Y31N	0.002	pfam_DUF3695	pfam_DUF3695	-	no_errors	C1orf194	HGNC	ENSG00000179902				81	0	0	59	4	6.34921
PRAMEF10	0	genome.wustl.edu	37	1	12955434	12955434	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	12955434	12955434	A	T	SNP	PRAMEF10	ENST00000235347	human	ensembl	74_37	-1	known	missense	c.245	p.L82Q	0.001	NULL	NULL	-	no_errors	PRAMEF10	HGNC	ENSG00000187545				55	0	0	42	3	6.66667
NBPF10	0	genome.wustl.edu	37	1	145367739	145367739	+	Silent	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	145367739	145367739	A	G	SNP	NBPF10	ENST00000342960	human	ensembl	74_37	+1	known	silent	c.10335	p.K3445	0.002	NULL	pfam_NBPF_dom	-	no_errors	NBPF10	HGNC	ENSG00000163386				36	0	0	60	4	6.25
GJA8	0	genome.wustl.edu	37	1	147381267	147381267	+	Silent	SNP	G	G	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	147381267	147381267	G	T	SNP	GJA8	ENST00000240986	human	ensembl	74_37	+1	known	silent	c.1185	p.G395	0.191	NULL	pfam_Connexin_N,pfam_Connexin50,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin50	-	no_errors	GJA8	HGNC	ENSG00000121634				36	0	0	37	4	9.7561
FLG2	0	genome.wustl.edu	37	1	152323733	152323733	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	152323733	152323733	T	C	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.6529	p.R2177G	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				308	0	0	327	48	12.8
CD1E	0	genome.wustl.edu	37	1	158324045	158324045	+	RNA	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	158324045	158324045	A	C	SNP	CD1E	ENST00000464822	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD1E	HGNC	ENSG00000158488				13	0	0	18	5	21.7391
CD1E	0	genome.wustl.edu	37	1	158324361	158324361	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	158324361	158324361	T	G	SNP	CD1E	ENST00000368167	human	ensembl	74_37	+1	known	missense	c.253	p.F85V	0.879	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1E	HGNC	ENSG00000158488				35	0	0	35	3	7.89474
LOC100131825	0	genome.wustl.edu	37	1	159170731	159170731	+	RNA	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	159170731	159170731	T	G	SNP	LOC100131825	ENST00000415675	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTA-134P22.2	Clone_based_vega_gene	ENSG00000225670				39	0	0	21	15	41.6667
DUSP23	0	genome.wustl.edu	37	1	159752111	159752111	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	159752111	159752111	T	G	SNP	DUSP23	ENST00000368107	human	ensembl	74_37	+1	known	missense	c.436	p.Y146D	1.000	smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	DUSP23	HGNC	ENSG00000158716				58	0	0	36	11	23.4043
NR5A2	0	genome.wustl.edu	37	1	200090021	200090021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	200090021	200090021	G	A	SNP	NR5A2	ENST00000367362	human	ensembl	74_37	+1	known	missense	c.1316	p.R439H	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833				101	0	0	103	19	15.5738
IGFN1	0	genome.wustl.edu	37	1	201185695	201185695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	201185695	201185695	G	A	SNP	IGFN1	ENST00000335211	human	ensembl	74_37	+1	known	missense	c.9409	p.V3137M	0.049	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGFN1	HGNC	ENSG00000163395				25	0	0	18	10	35.7143
C4BPA	0	genome.wustl.edu	37	1	207317917	207317917	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	207317917	207317917	T	C	SNP	C4BPA	ENST00000367070	human	ensembl	74_37	+1	known	missense	c.1649	p.L550P	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPA	HGNC	ENSG00000123838				58	0	0	73	51	41.129
OR2B11	0	genome.wustl.edu	37	1	247614817	247614817	+	Silent	SNP	G	G	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	247614817	247614817	G	T	SNP	OR2B11	ENST00000318749	human	ensembl	74_37	-1	known	silent	c.468	p.G156	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B11	HGNC	ENSG00000177535				53	0	0	23	21	47.7273
OR14A16	0	genome.wustl.edu	37	1	247978499	247978499	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	247978499	247978499	T	A	SNP	OR14A16	ENST00000357627	human	ensembl	74_37	-1	known	missense	c.533	p.D178V	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14A16	HGNC	ENSG00000196772				70	0	0	47	32	40.5063
OR2M5	0	genome.wustl.edu	37	1	248308897	248308897	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	248308897	248308897	A	G	SNP	OR2M5	ENST00000366476	human	ensembl	74_37	+1	known	missense	c.448	p.I150V	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727				251	0	0	290	34	10.4938
OR2T1	0	genome.wustl.edu	37	1	248569626	248569626	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	248569626	248569626	T	G	SNP	OR2T1	ENST00000366474	human	ensembl	74_37	+1	known	missense	c.331	p.F111V	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143				160	0	0	111	59	34.7059
LRRIQ3	0	genome.wustl.edu	37	1	74648428	74648428	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	74648428	74648428	T	G	SNP	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	missense	c.367	p.T123P	0.976	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				80	0	0	34	39	53.4247
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74957799	74957799	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	74957799	74957799	A	C	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	missense	c.2542	p.S848R	0.999	NULL	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				263	0	0	185	36	16.2896
ELTD1	0	genome.wustl.edu	37	1	79404899	79404899	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	79404899	79404899	C	A	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	missense	c.370	p.A124S	0.891	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618				28	0	0	18	10	35.7143
CLSTN1	0	genome.wustl.edu	37	1	9795564	9795564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	9795564	9795564	G	A	SNP	CLSTN1	ENST00000377298	human	ensembl	74_37	-1	known	missense	c.1844	p.T615M	1.000	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603				245	0	0	184	27	12.7962
TACC2	0	genome.wustl.edu	37	10	123843296	123843296	+	Silent	SNP	T	T	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	10	123843296	123843296	T	A	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	silent	c.1281	p.A427	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				110	0	0	52	17	24.6377
PFKP	0	genome.wustl.edu	37	10	3147323	3147323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	10	3147323	3147323	G	A	SNP	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	missense	c.637	p.V213I	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				46	0	0	31	7	18.4211
DYNC2H1	0	genome.wustl.edu	37	11	103075565	103075565	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	103075565	103075565	T	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.8326	p.L2776V	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				16	0	0	6	2	25
EXPH5	0	genome.wustl.edu	37	11	108383530	108383530	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	108383530	108383530	A	T	SNP	EXPH5	ENST00000265843	human	ensembl	74_37	-1	known	missense	c.2704	p.S902T	0.003	NULL	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	EXPH5	HGNC	ENSG00000110723				102	0	0	93	16	14.6789
ARHGAP20	0	genome.wustl.edu	37	11	110451100	110451100	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	110451100	110451100	A	G	SNP	ARHGAP20	ENST00000260283	human	ensembl	74_37	-1	known	missense	c.2570	p.L857P	0.497	NULL	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727				78	0	0	51	10	16.3934
BCO2	0	genome.wustl.edu	37	11	112046403	112046403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	112046403	112046403	C	T	SNP	BCO2	ENST00000357685	human	ensembl	74_37	+1	known	missense	c.79	p.R27W	0.000	NULL	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580				73	0	0	71	10	12.3457
SC5D	0	genome.wustl.edu	37	11	121174091	121174091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	121174091	121174091	C	T	SNP	SC5D	ENST00000264027	human	ensembl	74_37	+1	known	missense	c.7	p.L3F	1.000	NULL	pfam_Fatty_acid_hydroxylase	-	no_errors	SC5D	HGNC	ENSG00000109929				66	0	0	87	11	11.2245
TMEM225	0	genome.wustl.edu	37	11	123754862	123754862	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	123754862	123754862	T	C	SNP	TMEM225	ENST00000375026	human	ensembl	74_37	-1	known	missense	c.383	p.Q128R	0.000	NULL	NULL	-	no_errors	TMEM225	HGNC	ENSG00000204300				95	0	0	77	31	28.7037
MUC5B	0	genome.wustl.edu	37	11	1267074	1267074	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	1267074	1267074	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.8973	p.G2991	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				236	0	0	115	27	19.0141
TPH1	0	genome.wustl.edu	37	11	18062241	18062241	+	Silent	SNP	G	G	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	18062241	18062241	G	C	SNP	TPH1	ENST00000341556	human	ensembl	74_37	-1	known	silent	c.69	p.S23	1.000	pfam_ACT_dom,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH1	HGNC	ENSG00000129167				13	0	0	13	4	23.5294
MRGPRX1	0	genome.wustl.edu	37	11	18956338	18956338	+	RNA	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	18956338	18956338	A	T	SNP	MRGPRX1	ENST00000526914	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.014	-	-	-	no_errors	MRGPRX1	HGNC	ENSG00000170255				184	0	0	80	60	42.8571
ACCSL	0	genome.wustl.edu	37	11	44074584	44074584	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	44074584	44074584	A	C	SNP	ACCSL	ENST00000378832	human	ensembl	74_37	+1	known	missense	c.914	p.K305T	0.986	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCSL	HGNC	ENSG00000205126				74	0	0	35	14	28.5714
OR51E1	0	genome.wustl.edu	37	11	4674666	4674666	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	4674666	4674666	C	T	SNP	OR51E1	ENST00000396952	human	ensembl	74_37	+1	known	missense	c.910	p.R304C	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E1	HGNC	ENSG00000180785				111	0	0	62	15	19.4805
TRIM5	0	genome.wustl.edu	37	11	5686758	5686758	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	5686758	5686758	G	A	SNP	TRIM5	ENST00000396847	human	ensembl	74_37	-1	known	silent	c.1023	p.H341	0.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM5	HGNC	ENSG00000132256				54	0	0	33	6	15.3846
SCGB1D4	0	genome.wustl.edu	37	11	62064966	62064966	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	62064966	62064966	G	A	SNP	SCGB1D4	ENST00000358585	human	ensembl	74_37	-1	known	nonsense	c.220	p.R74*	0.001	pfam_Secretoglobin,superfamily_Secretoglobin	pfam_Secretoglobin,superfamily_Secretoglobin	-	no_errors	SCGB1D4	HGNC	ENSG00000197745				295	0	0	188	45	19.3133
AHNAK	0	genome.wustl.edu	37	11	62298581	62298581	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	62298581	62298581	A	G	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.3308	p.I1103T	0.262	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				120	0	0	50	31	38.2716
OR2D2	0	genome.wustl.edu	37	11	6913041	6913041	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	6913041	6913041	T	G	SNP	OR2D2	ENST00000299459	human	ensembl	74_37	-1	known	missense	c.691	p.T231P	0.359	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2D2	HGNC	ENSG00000166368				73	0	0	33	17	34
ANKRD42	0	genome.wustl.edu	37	11	82938901	82938901	+	Silent	SNP	T	T	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	11	82938901	82938901	T	A	SNP	ANKRD42	ENST00000393392	human	ensembl	74_37	+1	known	silent	c.816	p.T272	0.998	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD42	HGNC	ENSG00000137494				121	0	0	104	35	25.1799
MYO1H	0	genome.wustl.edu	37	12	109844646	109844646	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	109844646	109844646	T	G	SNP	MYO1H	ENST00000431443	human	ensembl	74_37	+1	known	missense	c.968	p.I323S	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527				68	0	0	49	25	33.7838
PRB2	0	genome.wustl.edu	37	12	11546745	11546745	+	Silent	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	11546745	11546745	A	G	SNP	PRB2	ENST00000389362	human	ensembl	74_37	-1	known	silent	c.267	p.P89	0.278	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335				226	0	0	205	39	15.9836
KSR2	0	genome.wustl.edu	37	12	117909125	117909125	+	Silent	SNP	G	G	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	117909125	117909125	G	T	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	silent	c.2583	p.G861	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435				58	0	0	45	6	11.7647
SBNO1	0	genome.wustl.edu	37	12	123794051	123794051	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	123794051	123794051	G	A	SNP	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	silent	c.3522	p.H1174	0.967	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697				225	1	0.442478	195	36	15.5844
EPS8	0	genome.wustl.edu	37	12	15811059	15811059	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	15811059	15811059	G	C	SNP	EPS8	ENST00000281172	human	ensembl	74_37	-1	known	missense	c.1055	p.P352R	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491				40	0	0	34	3	8.10811
SLCO1C1	0	genome.wustl.edu	37	12	20876091	20876091	+	Silent	SNP	T	T	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	20876091	20876091	T	A	SNP	SLCO1C1	ENST00000381552	human	ensembl	74_37	+1	known	silent	c.1089	p.T363	0.134	pfam_OA_transporter,pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155				67	0	0	68	14	17.0732
BCAT1	0	genome.wustl.edu	37	12	25047227	25047227	+	Silent	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	25047227	25047227	A	C	SNP	BCAT1	ENST00000261192	human	ensembl	74_37	-1	known	silent	c.261	p.A87	0.041	superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT1	HGNC	ENSG00000060982				55	0	0	42	4	8.69565
ADAMTS20	0	genome.wustl.edu	37	12	43821195	43821195	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	43821195	43821195	G	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	silent	c.4023	p.Y1341	0.991	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				48	0	0	54	3	5.26316
LOC100127967	0	genome.wustl.edu	37	12	53007444	53007444	+	RNA	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	53007444	53007444	T	G	SNP	LOC100127967	ENST00000549180	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-641A6.2	Clone_based_vega_gene	ENSG00000257495				71	0	0	31	20	39.2157
KRT73	0	genome.wustl.edu	37	12	53010156	53010156	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	53010156	53010156	G	A	SNP	KRT73	ENST00000305748	human	ensembl	74_37	-1	known	silent	c.456	p.F152	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049				55	0	0	32	15	31.9149
DGKA	0	genome.wustl.edu	37	12	56335305	56335305	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	56335305	56335305	A	C	SNP	DGKA	ENST00000331886	human	ensembl	74_37	+1	known	missense	c.1187	p.K396T	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKA	HGNC	ENSG00000065357				174	0	0	124	37	22.9814
CCDC41	0	genome.wustl.edu	37	12	94763808	94763808	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	94763808	94763808	T	C	SNP	CCDC41	ENST00000339839	human	ensembl	74_37	-1	known	missense	c.938	p.K313R	1.000	NULL	NULL	-	no_errors	CCDC41	HGNC	ENSG00000173588				99	0	0	94	43	31.3869
CCDC38	0	genome.wustl.edu	37	12	96273421	96273421	+	Splice_Site	SNP	C	C	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	96273421	96273421	C	G	SNP	CCDC38	ENST00000344280	human	ensembl	74_37	-1	known	splice_site	c.1142+1	e11+1	1.000	-	-	-	no_errors	CCDC38	HGNC	ENSG00000165972				34	0	0	46	8	14.8148
BRCA2	0	genome.wustl.edu	37	13	32972435	32972435	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	13	32972435	32972435	A	C	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.9785	p.Q3262P	0.355	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				87	0	0	98	25	20.3252
BRCA2	0	genome.wustl.edu	37	13	32972587	32972587	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	13	32972587	32972587	A	C	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.9937	p.K3313Q	0.770	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				44	0	0	36	16	30.7692
VWA8	0	genome.wustl.edu	37	13	42465633	42465633	+	Silent	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	13	42465633	42465633	A	G	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	silent	c.574	p.L192	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				95	0	0	129	17	11.6438
PCDH20	0	genome.wustl.edu	37	13	61985896	61985896	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	13	61985896	61985896	A	G	SNP	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	missense	c.2336	p.V779A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991				51	0	0	50	10	16.6667
EDNRB	0	genome.wustl.edu	37	13	78493701	78493701	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	13	78493701	78493701	C	T	SNP	EDNRB	ENST00000377211	human	ensembl	74_37	-1	putative	nonsense	c.50	p.W17*	0.072	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				28	0	0	16	10	38.4615
SLITRK5	0	genome.wustl.edu	37	13	88328652	88328652	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	13	88328652	88328652	C	A	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.1009	p.P337T	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				117	0	0	120	7	5.51181
MIA2	0	genome.wustl.edu	37	14	39709847	39709847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	14	39709847	39709847	C	T	SNP	MIA2	ENST00000556784	human	ensembl	74_37	+1	putative	missense	c.329	p.T110M	1.000	superfamily_SH3_domain	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526				60	0	0	46	5	9.80392
FAM179B	0	genome.wustl.edu	37	14	45433301	45433301	+	Silent	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	14	45433301	45433301	A	G	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	silent	c.1677	p.Q559	0.048	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				134	0	0	54	14	20.5882
TBPL2	0	genome.wustl.edu	37	14	55881108	55881108	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	14	55881108	55881108	T	A	SNP	TBPL2	ENST00000247219	human	ensembl	74_37	-1	known	nonsense	c.1117	p.K373*	1.000	NULL	pfam_TBP,prints_TBP	-	no_errors	TBPL2	HGNC	ENSG00000182521				47	0	0	16	17	51.5152
KCNH5	0	genome.wustl.edu	37	14	63416847	63416847	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	14	63416847	63416847	T	C	SNP	KCNH5	ENST00000394964	human	ensembl	74_37	-1	novel	missense	c.1199	p.K400R	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_PAS,smart_PAC,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	KCNH5	HGNC	ENSG00000140015				38	0	0	30	7	18.9189
UNC79	0	genome.wustl.edu	37	14	94060075	94060075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	14	94060075	94060075	G	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.3082	p.V1028I	0.998	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				152	0	0	114	17	12.9771
DNM1P47	0	genome.wustl.edu	37	15	102300677	102300677	+	RNA	SNP	C	C	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	15	102300677	102300677	C	G	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.889	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				49	0	0	27	4	12.9032
NPAP1	0	genome.wustl.edu	37	15	24921670	24921670	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	15	24921670	24921670	A	T	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.656	p.N219I	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				26	0	0	21	4	16
CTDSPL2	0	genome.wustl.edu	37	15	44816331	44816331	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	15	44816331	44816331	A	G	SNP	CTDSPL2	ENST00000260327	human	ensembl	74_37	+1	known	missense	c.1360	p.R454G	1.000	superfamily_HAD-like_dom	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSPL2	HGNC	ENSG00000137770				67	0	0	43	9	17.3077
MYO9A	0	genome.wustl.edu	37	15	72196297	72196297	+	Silent	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	15	72196297	72196297	T	C	SNP	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	silent	c.2850	p.S950	0.982	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933				37	0	0	28	2	6.66667
CYP11A1	0	genome.wustl.edu	37	15	74659825	74659825	+	Silent	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	15	74659825	74659825	A	G	SNP	CYP11A1	ENST00000268053	human	ensembl	74_37	-1	known	silent	c.102	p.T34	0.000	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_mitochondrial,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP11A1	HGNC	ENSG00000140459				51	0	0	21	9	30
MEX3B	0	genome.wustl.edu	37	15	82335547	82335547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	15	82335547	82335547	G	A	SNP	MEX3B	ENST00000329713	human	ensembl	74_37	-1	known	missense	c.1664	p.P555L	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3B	HGNC	ENSG00000183496				125	0	0	55	16	22.5352
RHCG	0	genome.wustl.edu	37	15	90023598	90023598	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	15	90023598	90023598	G	A	SNP	RHCG	ENST00000268122	human	ensembl	74_37	-1	known	silent	c.564	p.G188	0.077	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHCG	HGNC	ENSG00000140519				156	0	0	94	28	22.9508
IGF1R	0	genome.wustl.edu	37	15	99434708	99434708	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	15	99434708	99434708	G	A	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	silent	c.795	p.P265	0.059	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443				78	0	0	32	11	25.5814
ACSM2B	0	genome.wustl.edu	37	16	20576139	20576139	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	16	20576139	20576139	A	C	SNP	ACSM2B	ENST00000329697	human	ensembl	74_37	-1	known	missense	c.29	p.L10R	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2B	HGNC	ENSG00000066813				49	0	0	40	7	14.8936
PRSS36	0	genome.wustl.edu	37	16	31157137	31157137	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	16	31157137	31157137	G	A	SNP	PRSS36	ENST00000268281	human	ensembl	74_37	-1	known	silent	c.693	p.Y231	0.734	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS36	HGNC	ENSG00000178226				107	0	0	75	16	17.5824
IRX5	0	genome.wustl.edu	37	16	54967389	54967389	+	Silent	SNP	C	C	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	16	54967389	54967389	C	G	SNP	IRX5	ENST00000394636	human	ensembl	74_37	+1	known	silent	c.1056	p.G352	0.945	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX5	HGNC	ENSG00000176842				23	0	0	10	5	33.3333
CNOT1	0	genome.wustl.edu	37	16	58612764	58612764	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	16	58612764	58612764	A	C	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.1423	p.F475V	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				78	0	0	39	23	37.0968
MTSS1L	0	genome.wustl.edu	37	16	70697994	70697994	+	Silent	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	16	70697994	70697994	C	T	SNP	MTSS1L	ENST00000338779	human	ensembl	74_37	-1	known	silent	c.1830	p.A610	0.996	NULL	pfam_IRSp53/MIM_homology_IMD	-	no_errors	MTSS1L	HGNC	ENSG00000132613				40	0	0	10	7	41.1765
BCMO1	0	genome.wustl.edu	37	16	81314536	81314536	+	Silent	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	16	81314536	81314536	A	G	SNP	BCMO1	ENST00000258168	human	ensembl	74_37	+1	known	silent	c.1176	p.Q392	0.202	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697				33	0	0	18	12	40
ZC3H18	0	genome.wustl.edu	37	16	88691082	88691082	+	Silent	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	16	88691082	88691082	C	T	SNP	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	silent	c.1971	p.P657	0.038	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				46	0	0	30	5	14.2857
LRRC37B	0	genome.wustl.edu	37	17	30349600	30349600	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	17	30349600	30349600	C	T	SNP	LRRC37B	ENST00000341671	human	ensembl	74_37	+1	known	nonsense	c.1435	p.Q479*	0.001	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158				78	0	0	54	11	16.9231
SLC35G3	0	genome.wustl.edu	37	17	33520327	33520327	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	17	33520327	33520327	C	A	SNP	SLC35G3	ENST00000297307	human	ensembl	74_37	-1	known	missense	c.1000	p.G334W	0.102	NULL	pfam_DMT	-	no_errors	SLC35G3	HGNC	ENSG00000164729				71	0	0	50	4	7.40741
WNK4	0	genome.wustl.edu	37	17	40945635	40945635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	17	40945635	40945635	C	T	SNP	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	missense	c.2183	p.S728L	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				76	0	0	48	10	17.2414
XYLT2	0	genome.wustl.edu	37	17	48433527	48433527	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	17	48433527	48433527	C	T	SNP	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	missense	c.1387	p.R463C	1.000	pfam_Glyco_trans_14	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				113	0	0	94	16	14.5455
KIF2B	0	genome.wustl.edu	37	17	51901040	51901040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	17	51901040	51901040	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.646	p.V216I	1.000	superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				46	0	0	38	10	20.8333
MAP3K3	0	genome.wustl.edu	37	17	61766936	61766936	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	17	61766936	61766936	C	A	SNP	MAP3K3	ENST00000361357	human	ensembl	74_37	+1	known	missense	c.997	p.Q333K	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K3	HGNC	ENSG00000198909				35	0	0	23	6	20.6897
SCN4A	0	genome.wustl.edu	37	17	62026057	62026057	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	17	62026057	62026057	G	C	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.3058	p.L1020V	0.955	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				49	0	0	40	18	31.0345
PITPNM3	0	genome.wustl.edu	37	17	6374626	6374626	+	Silent	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	17	6374626	6374626	C	A	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	silent	c.1479	p.R493	0.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				19	0	0	12	3	20
TP53	0	genome.wustl.edu	37	17	7577156	7577156	+	Splice_Site	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	17	7577156	7577156	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.783-1	e7-1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510				16	0	0	2	7	77.7778
RBBP8	0	genome.wustl.edu	37	18	20529656	20529656	+	Silent	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	18	20529656	20529656	C	A	SNP	RBBP8	ENST00000327155	human	ensembl	74_37	+1	known	silent	c.228	p.T76	1.000	pfam_CtIP_N	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773				43	0	0	58	26	30.9524
MAPK4	0	genome.wustl.edu	37	18	48256160	48256160	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	18	48256160	48256160	C	A	SNP	MAPK4	ENST00000400384	human	ensembl	74_37	+1	known	missense	c.1700	p.A567E	0.924	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639				16	0	0	5	2	28.5714
MEX3C	0	genome.wustl.edu	37	18	48703728	48703728	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	18	48703728	48703728	C	T	SNP	MEX3C	ENST00000406189	human	ensembl	74_37	-1	known	missense	c.973	p.G325S	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3C	HGNC	ENSG00000176624				38	0	0	10	5	33.3333
C3P1	0	genome.wustl.edu	37	19	10158055	10158055	+	RNA	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	10158055	10158055	A	C	SNP	C3P1	ENST00000495140	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.866	-	-	-	no_errors	C3P1	HGNC	ENSG00000167798				154	0	0	77	21	21.4286
KRI1	0	genome.wustl.edu	37	19	10665849	10665849	+	Silent	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	10665849	10665849	C	T	SNP	KRI1	ENST00000312962	human	ensembl	74_37	-1	known	silent	c.1713	p.E571	1.000	pfam_KRR1-interact_protein_1	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347				139	0	0	49	43	46.7391
ZNF737	0	genome.wustl.edu	37	19	20727642	20727642	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	20727642	20727642	T	C	SNP	ZNF737	ENST00000427401	human	ensembl	74_37	-1	known	missense	c.1367	p.E456G	0.042	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440				67	0	0	32	21	39.6226
ZNF345	0	genome.wustl.edu	37	19	37368345	37368345	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	37368345	37368345	A	G	SNP	ZNF345	ENST00000420450	human	ensembl	74_37	+1	known	missense	c.613	p.I205V	0.750	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF345	HGNC	ENSG00000251247				82	0	0	38	23	37.7049
C19orf33	0	genome.wustl.edu	37	19	38795285	38795285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	38795285	38795285	G	A	SNP	C19orf33	ENST00000301246	human	ensembl	74_37	+1	known	missense	c.160	p.D54N	0.653	NULL	NULL	-	no_errors	C19orf33	HGNC	ENSG00000167644				43	0	0	19	9	32.1429
PPP1R13L	0	genome.wustl.edu	37	19	45899878	45899878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	45899878	45899878	C	T	SNP	PPP1R13L	ENST00000360957	human	ensembl	74_37	-1	known	missense	c.637	p.A213T	0.005	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881				26	0	0	4	9	69.2308
CD33	0	genome.wustl.edu	37	19	51728508	51728508	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	51728508	51728508	A	T	SNP	CD33	ENST00000262262	human	ensembl	74_37	+1	known	missense	c.72	p.Q24H	0.000	pfam_Ig_V-set,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD33	HGNC	ENSG00000105383				65	0	0	81	9	10
ZNF528	0	genome.wustl.edu	37	19	52918410	52918410	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	52918410	52918410	A	T	SNP	ZNF528	ENST00000360465	human	ensembl	74_37	+1	known	missense	c.305	p.N102I	0.057	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF528	HGNC	ENSG00000167555				43	0	0	64	5	7.24638
MIR518D	0	genome.wustl.edu	37	19	54238162	54238162	+	RNA	SNP	T	T	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	54238162	54238162	T	A	SNP	MIR518D	ENST00000385014	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	MIR518D	HGNC	ENSG00000207747				66	0	0	92	27	22.6891
PRKCG	0	genome.wustl.edu	37	19	54407962	54407962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	54407962	54407962	C	T	SNP	PRKCG	ENST00000540413	human	ensembl	74_37	+1	known	missense	c.1730	p.S577L	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583				57	0	0	34	5	12.8205
LILRB5	0	genome.wustl.edu	37	19	54755967	54755967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	54755967	54755967	C	T	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	missense	c.1552	p.A518T	0.797	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				211	0	0	208	62	22.963
ZFP28	0	genome.wustl.edu	37	19	57060356	57060356	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	57060356	57060356	T	G	SNP	ZFP28	ENST00000301318	human	ensembl	74_37	+1	known	missense	c.553	p.L185V	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867				43	0	0	38	11	22.449
ZNF211	0	genome.wustl.edu	37	19	58152621	58152621	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	58152621	58152621	T	A	SNP	ZNF211	ENST00000240731	human	ensembl	74_37	+1	known	missense	c.806	p.L269H	0.016	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF211	HGNC	ENSG00000121417				124	0	0	155	15	8.82353
ZSCAN4	0	genome.wustl.edu	37	19	58189377	58189377	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	58189377	58189377	A	C	SNP	ZSCAN4	ENST00000318203	human	ensembl	74_37	+1	known	missense	c.492	p.Q164H	0.003	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN4	HGNC	ENSG00000180532				76	0	0	107	20	15.748
CD320	0	genome.wustl.edu	37	19	8369960	8369960	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	19	8369960	8369960	C	G	SNP	CD320	ENST00000301458	human	ensembl	74_37	-1	known	missense	c.223	p.D75H	0.842	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	CD320	HGNC	ENSG00000167775				49	0	0	29	3	9.375
ST6GAL2	0	genome.wustl.edu	37	2	107459867	107459867	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	107459867	107459867	G	A	SNP	ST6GAL2	ENST00000361686	human	ensembl	74_37	-1	known	silent	c.567	p.G189	0.003	NULL	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	-	no_errors	ST6GAL2	HGNC	ENSG00000144057				80	0	0	33	19	36.5385
RGPD4	0	genome.wustl.edu	37	2	108488780	108488780	+	Silent	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	108488780	108488780	A	G	SNP	RGPD4	ENST00000354986	human	ensembl	74_37	+1	known	silent	c.4320	p.K1440	0.983	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862				177	0	0	113	61	35.0575
POTEI	0	genome.wustl.edu	37	2	131220629	131220629	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	131220629	131220629	G	T	SNP	POTEI	ENST00000451531	human	ensembl	74_37	-1	novel	missense	c.2988	p.N996K	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEI	HGNC	ENSG00000196834				15	0	0	3	3	50
LRP1B	0	genome.wustl.edu	37	2	141812802	141812802	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	141812802	141812802	G	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.1435	p.P479A	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				56	0	0	12	10	45.4545
ZEB2	0	genome.wustl.edu	37	2	145154151	145154151	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	145154151	145154151	C	A	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.2895	p.L965F	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				25	0	0	24	4	14.2857
TPO	0	genome.wustl.edu	37	2	1497732	1497732	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	1497732	1497732	T	C	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	missense	c.1927	p.F643L	0.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				51	0	0	40	4	9.09091
SCN3A	0	genome.wustl.edu	37	2	165986737	165986737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	165986737	165986737	C	A	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	missense	c.2635	p.V879L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				90	0	0	87	5	5.43478
TTN	0	genome.wustl.edu	37	2	179407393	179407393	+	Silent	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	179407393	179407393	A	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.89484	p.I29828	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				223	0	0	111	57	33.9286
ENSG00000231689	0	genome.wustl.edu	37	2	189092835	189092835	+	RNA	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	189092835	189092835	C	T	SNP	ENSG00000231689	ENST00000415357	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.953	-	-	-	no_errors	AC068718.1	Clone_based_vega_gene	ENSG00000231689				33	0	0	27	13	32.5
ZDBF2	0	genome.wustl.edu	37	2	207174303	207174303	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	207174303	207174303	A	G	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.5051	p.H1684R	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				60	0	0	40	23	36.5079
RPE	0	genome.wustl.edu	37	2	210884513	210884513	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	210884513	210884513	T	C	SNP	RPE	ENST00000359429	human	ensembl	74_37	+1	known	nonstop	c.685	p.*229R	1.000	NULL	pfam_Ribul_P_3_epim-like,superfamily_RibuloseP-bd_barrel,tigrfam_Ribul_P_3_epim-like	-	no_errors	RPE	HGNC	ENSG00000197713				18	0	0	16	3	15.7895
ALPI	0	genome.wustl.edu	37	2	233323084	233323084	+	Silent	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	233323084	233323084	T	C	SNP	ALPI	ENST00000295463	human	ensembl	74_37	+1	known	silent	c.1149	p.F383	0.946	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPI	HGNC	ENSG00000163295				39	0	0	22	2	8.33333
XDH	0	genome.wustl.edu	37	2	31572645	31572645	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	31572645	31572645	T	G	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	missense	c.2876	p.K959T	0.997	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125				102	0	0	70	16	18.6047
BIRC6	0	genome.wustl.edu	37	2	32602775	32602775	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	32602775	32602775	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.445	p.A149T	1.000	superfamily_WD40_repeat_dom	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				104	1	0.952381	77	5	6.09756
BIRC6	0	genome.wustl.edu	37	2	32724719	32724719	+	Silent	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	32724719	32724719	C	T	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	silent	c.8574	p.A2858	0.980	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				139	1	0.714286	105	20	16
PPM1B	0	genome.wustl.edu	37	2	44459579	44459579	+	RNA	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	44459579	44459579	C	T	SNP	PPM1B	ENST00000459690	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PPM1B	HGNC	ENSG00000138032				17	0	0	11	4	26.6667
FSHR	0	genome.wustl.edu	37	2	49381499	49381499	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	49381499	49381499	G	T	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.58	p.H20N	0.998	pfam_LRR-contain_N,smart_LRR-contain_N,prints_FSH_rcpt	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				43	0	0	27	8	22.8571
PROKR1	0	genome.wustl.edu	37	2	68882556	68882556	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	68882556	68882556	A	G	SNP	PROKR1	ENST00000303786	human	ensembl	74_37	+1	known	missense	c.1030	p.T344A	0.990	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR1	HGNC	ENSG00000169618				79	0	0	47	6	11.3208
KIDINS220	0	genome.wustl.edu	37	2	8919264	8919264	+	Silent	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	2	8919264	8919264	T	C	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	silent	c.2376	p.R792	1.000	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				73	0	0	51	10	16.3934
NINL	0	genome.wustl.edu	37	20	25478911	25478911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	20	25478911	25478911	C	T	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.1104	p.M368I	0.948	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				45	0	0	36	11	23.4043
DNMT3B	0	genome.wustl.edu	37	20	31388003	31388003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	20	31388003	31388003	G	A	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	missense	c.1804	p.V602I	0.459	pfam_C5_MeTfrase	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				123	0	0	187	17	8.33333
ENSG00000244558	0	genome.wustl.edu	37	20	43374604	43374604	+	Splice_Site	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	20	43374604	43374604	A	G	SNP	ENSG00000244558	ENST00000427303	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	RP11-445H22.4	Clone_based_vega_gene	ENSG00000244558				17	0	0	31	6	16.2162
TSHZ2	0	genome.wustl.edu	37	20	51870079	51870079	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	20	51870079	51870079	A	C	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.82	p.K28Q	0.989	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				15	0	0	6	13	68.4211
LAMA5	0	genome.wustl.edu	37	20	60913351	60913351	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	20	60913351	60913351	C	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.1693	p.G565C	1.000	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				16	0	0	14	5	26.3158
ANKRD30BP2	0	genome.wustl.edu	37	21	14417520	14417520	+	RNA	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	21	14417520	14417520	A	G	SNP	ANKRD30BP2	ENST00000471407	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ANKRD30BP2	HGNC	ENSG00000224309				25	0	0	24	3	11.1111
FTCD	0	genome.wustl.edu	37	21	47574136	47574136	+	Silent	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	21	47574136	47574136	C	T	SNP	FTCD	ENST00000359679	human	ensembl	74_37	-1	known	silent	c.165	p.P55	0.000	pfam_Formiminotransferase_N,superfamily_FormiminoTrfase_N/C_subdom,tigrfam_Formiminotransferase_cat	pfam_Formiminotransferase_N,pfam_Formiminotransferase_C,pfam_Cyclodeamin/CycHdrlase,superfamily_FormiminoTrfase_N/C_subdom,superfamily_Cyclodeamin/CycHdrlase,tigrfam_Formiminotransferase_cat	-	no_errors	FTCD	HGNC	ENSG00000160282				87	0	0	30	13	30.2326
PCNT	0	genome.wustl.edu	37	21	47832901	47832901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	21	47832901	47832901	G	A	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.6145	p.G2049S	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				39	0	0	25	4	13.7931
OR11H1	0	genome.wustl.edu	37	22	16449513	16449513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	22	16449513	16449513	C	T	SNP	OR11H1	ENST00000252835	human	ensembl	74_37	-1	known	missense	c.292	p.V98I	0.749	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11H1	HGNC	ENSG00000130538				19	0	0	10	3	23.0769
TTLL1	0	genome.wustl.edu	37	22	43442565	43442565	+	Silent	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	22	43442565	43442565	C	T	SNP	TTLL1	ENST00000266254	human	ensembl	74_37	-1	known	silent	c.993	p.P331	0.657	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL1	HGNC	ENSG00000100271				144	0	0	105	31	22.7941
FANCD2	0	genome.wustl.edu	37	3	10088405	10088405	+	Silent	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	10088405	10088405	T	C	SNP	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	silent	c.1276	p.L426	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554				51	0	0	31	15	32.6087
IMPG2	0	genome.wustl.edu	37	3	100951810	100951810	+	Silent	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	100951810	100951810	A	G	SNP	IMPG2	ENST00000193391	human	ensembl	74_37	-1	known	silent	c.3048	p.F1016	1.000	pfscan_EG-like_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG2	HGNC	ENSG00000081148				71	0	0	68	34	33.3333
NXPE3	0	genome.wustl.edu	37	3	101540654	101540654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	101540654	101540654	G	A	SNP	NXPE3	ENST00000273347	human	ensembl	74_37	+1	known	missense	c.1536	p.M512I	1.000	NULL	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE3	HGNC	ENSG00000144815				154	0	0	136	34	20
KIAA1407	0	genome.wustl.edu	37	3	113761657	113761657	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	113761657	113761657	A	G	SNP	KIAA1407	ENST00000295878	human	ensembl	74_37	-1	known	missense	c.308	p.L103P	1.000	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617				78	0	0	99	22	18.1818
FSTL1	0	genome.wustl.edu	37	3	120115829	120115829	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	120115829	120115829	C	A	SNP	FSTL1	ENST00000295633	human	ensembl	74_37	-1	known	missense	c.897	p.K299N	1.000	NULL	pfam_Kazal_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Kazal_dom,pfscan_EF_hand_dom	-	no_errors	FSTL1	HGNC	ENSG00000163430				129	0	0	132	52	28.2609
HSPBAP1	0	genome.wustl.edu	37	3	122459454	122459454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	122459454	122459454	G	A	SNP	HSPBAP1	ENST00000306103	human	ensembl	74_37	-1	known	missense	c.1205	p.P402L	0.001	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom,prints_HSPB1-associated_protein_1	-	no_errors	HSPBAP1	HGNC	ENSG00000169087				139	0	0	188	29	13.3641
PLXND1	0	genome.wustl.edu	37	3	129277407	129277407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	129277407	129277407	C	T	SNP	PLXND1	ENST00000324093	human	ensembl	74_37	-1	known	missense	c.5309	p.R1770Q	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXND1	HGNC	ENSG00000004399				70	0	0	69	16	18.8235
COL6A5	0	genome.wustl.edu	37	3	130187765	130187765	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	130187765	130187765	A	T	SNP	COL6A5	ENST00000265379	human	ensembl	74_37	+1	known	missense	c.6917	p.E2306V	0.920	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752				20	0	0	30	8	21.0526
COL6A6	0	genome.wustl.edu	37	3	130354547	130354547	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	130354547	130354547	A	T	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.5033	p.E1678V	0.946	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				32	0	0	32	5	13.5135
FBLN2	0	genome.wustl.edu	37	3	13659633	13659633	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	13659633	13659633	T	C	SNP	FBLN2	ENST00000404922	human	ensembl	74_37	+1	known	missense	c.1787	p.L596P	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_EG-like_dom,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd_dom,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520				164	0	0	104	41	28.2759
DZIP1L	0	genome.wustl.edu	37	3	137822699	137822699	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	137822699	137822699	T	G	SNP	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	missense	c.115	p.S39R	0.193	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163				193	0	0	113	137	54.8
PAQR9	0	genome.wustl.edu	37	3	142681913	142681913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	142681913	142681913	G	A	SNP	PAQR9	ENST00000340634	human	ensembl	74_37	-1	known	missense	c.266	p.T89M	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR9	HGNC	ENSG00000188582				24	0	0	35	29	45.3125
POMGNT2	0	genome.wustl.edu	37	3	43122809	43122809	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	43122809	43122809	T	C	SNP	POMGNT2	ENST00000344697	human	ensembl	74_37	-1	known	missense	c.115	p.S39G	0.002	NULL	pfam_Glycosyltransferase_AER61,superfamily_Fibronectin_type3	-	no_errors	POMGNT2	HGNC	ENSG00000144647				36	0	0	30	4	11.7647
GRM2	0	genome.wustl.edu	37	3	51747059	51747059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	51747059	51747059	C	T	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	missense	c.1021	p.R341W	0.996	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				36	0	0	15	9	37.5
ROBO1	0	genome.wustl.edu	37	3	79174627	79174627	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	79174627	79174627	C	T	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.151	p.D51N	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				38	0	0	25	7	21.875
ANK2	0	genome.wustl.edu	37	4	114294571	114294571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	4	114294571	114294571	G	A	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.11825	p.R3942H	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				137	0	0	109	20	15.5039
NDNF	0	genome.wustl.edu	37	4	121957572	121957572	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	4	121957572	121957572	G	A	SNP	NDNF	ENST00000379692	human	ensembl	74_37	-1	known	silent	c.1554	p.F518	1.000	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	NDNF	HGNC	ENSG00000173376				41	0	0	48	5	9.43396
PDGFC	0	genome.wustl.edu	37	4	157771489	157771489	+	Silent	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	4	157771489	157771489	A	C	SNP	PDGFC	ENST00000502773	human	ensembl	74_37	-1	known	silent	c.198	p.T66	0.758	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_PDGF/VEGF_dom,superfamily_CUB_dom,smart_CUB_dom,smart_PDGF/VEGF_dom,pfscan_CUB_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFC	HGNC	ENSG00000145431				52	0	0	27	6	18.1818
RAPGEF6	0	genome.wustl.edu	37	5	130828379	130828379	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	5	130828379	130828379	G	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	74_37	-1	known	nonsense	c.1627	p.Q543*	0.501	pfam_PDZ,superfamily_Ras_GEF_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987				81	0	0	75	14	15.7303
TGFBI	0	genome.wustl.edu	37	5	135392470	135392470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	5	135392470	135392470	G	A	SNP	TGFBI	ENST00000305126	human	ensembl	74_37	+1	known	missense	c.1664	p.R555Q	1.000	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708				17	0	0	18	5	21.7391
MFAP3	0	genome.wustl.edu	37	5	153429236	153429236	+	RNA	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	5	153429236	153429236	A	C	SNP	MFAP3	ENST00000519928	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MFAP3	HGNC	ENSG00000037749				22	0	0	13	3	18.75
DOCK2	0	genome.wustl.edu	37	5	169423161	169423161	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	5	169423161	169423161	A	C	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.3065	p.E1022A	1.000	superfamily_ARM-type_fold,superfamily_Ferritin-like_SF	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				44	0	0	26	15	36.5854
CENPH	0	genome.wustl.edu	37	5	68498798	68498798	+	Splice_Site	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	5	68498798	68498798	G	A	SNP	CENPH	ENST00000283006	human	ensembl	74_37	+1	known	splice_site	c.487+1	e7+1	0.927	-	-	-	no_errors	CENPH	HGNC	ENSG00000153044				38	0	0	28	5	15.1515
ADCY2	0	genome.wustl.edu	37	5	7706939	7706939	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	5	7706939	7706939	C	A	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	missense	c.1192	p.L398M	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				164	0	0	133	20	13.0719
VCAN	0	genome.wustl.edu	37	5	82816102	82816102	+	Silent	SNP	T	T	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	5	82816102	82816102	T	A	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	silent	c.1977	p.S659	0.371	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				80	0	0	76	13	14.6067
ASCC3	0	genome.wustl.edu	37	6	101103582	101103582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	6	101103582	101103582	G	A	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.2816	p.A939V	0.999	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				44	0	0	32	22	40.7407
REV3L	0	genome.wustl.edu	37	6	111696720	111696720	+	Silent	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	6	111696720	111696720	A	T	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	silent	c.2838	p.P946	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				25	0	0	18	9	33.3333
HSF2	0	genome.wustl.edu	37	6	122740353	122740353	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	6	122740353	122740353	T	G	SNP	HSF2	ENST00000368455	human	ensembl	74_37	+1	known	missense	c.572	p.L191R	1.000	NULL	pfam_Vert_HSTF_C,pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF2	HGNC	ENSG00000025156				37	0	0	32	5	13.5135
SYNE1	0	genome.wustl.edu	37	6	152551776	152551776	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	6	152551776	152551776	A	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.21101	p.L7034Q	1.000	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				76	0	0	43	13	23.2143
RREB1	0	genome.wustl.edu	37	6	7230131	7230131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	6	7230131	7230131	G	A	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	missense	c.1799	p.S600N	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				33	0	0	22	2	8.33333
RIMS1	0	genome.wustl.edu	37	6	72974729	72974729	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	6	72974729	72974729	G	A	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	silent	c.3168	p.Q1056	0.997	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				9	0	0	12	3	20
KCNQ5	0	genome.wustl.edu	37	6	73904338	73904338	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	6	73904338	73904338	C	T	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.2030	p.S677L	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				94	0	0	57	16	21.9178
GIGYF1	0	genome.wustl.edu	37	7	100281681	100281681	+	Silent	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	100281681	100281681	C	T	SNP	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	silent	c.1830	p.T610	0.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830				21	0	0	13	5	27.7778
OR2F1	0	genome.wustl.edu	37	7	143657492	143657492	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	143657492	143657492	G	A	SNP	OR2F1	ENST00000392899	human	ensembl	74_37	+1	known	silent	c.429	p.R143	0.124	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215				97	0	0	49	21	30
SSPO	0	genome.wustl.edu	37	7	149480298	149480298	+	RNA	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	149480298	149480298	A	G	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				56	0	0	24	2	7.69231
SP8	0	genome.wustl.edu	37	7	20824641	20824641	+	Silent	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	20824641	20824641	C	T	SNP	SP8	ENST00000418710	human	ensembl	74_37	-1	known	silent	c.795	p.P265	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Antifreeze_1	-	no_errors	SP8	HGNC	ENSG00000164651				25	0	0	10	6	37.5
NOD1	0	genome.wustl.edu	37	7	30491122	30491122	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	30491122	30491122	G	A	SNP	NOD1	ENST00000222823	human	ensembl	74_37	-1	known	silent	c.1911	p.R637	0.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100				20	0	0	21	3	12.5
SDK1	0	genome.wustl.edu	37	7	4172020	4172020	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	4172020	4172020	G	A	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	nonsense	c.4193	p.W1398*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				36	0	0	12	9	42.8571
PKD1L1	0	genome.wustl.edu	37	7	47894629	47894629	+	Silent	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	47894629	47894629	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	silent	c.4710	p.R1570	0.001	pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				52	0	0	30	9	23.0769
PCLO	0	genome.wustl.edu	37	7	82544566	82544566	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	82544566	82544566	T	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.12736	p.R4246G	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				26	0	0	16	7	30.4348
PCLO	0	genome.wustl.edu	37	7	82545323	82545323	+	Silent	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	82545323	82545323	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.11979	p.T3993	0.986	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				359	0	0	261	66	20.1835
PCLO	0	genome.wustl.edu	37	7	82584206	82584206	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	82584206	82584206	A	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.6063	p.H2021Q	0.963	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				41	0	0	30	8	21.0526
DMTF1	0	genome.wustl.edu	37	7	86800391	86800391	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	86800391	86800391	G	T	SNP	DMTF1	ENST00000331242	human	ensembl	74_37	+1	known	missense	c.313	p.V105L	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	DMTF1	HGNC	ENSG00000135164				49	0	0	35	2	5.40541
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99027390	99027390	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	99027390	99027390	T	C	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	missense	c.781	p.T261A	1.000	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919				50	0	0	22	10	31.25
GPC2	0	genome.wustl.edu	37	7	99774670	99774670	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	7	99774670	99774670	G	A	SNP	GPC2	ENST00000292377	human	ensembl	74_37	-1	known	silent	c.153	p.P51	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC2	HGNC	ENSG00000213420				31	0	0	35	2	5.40541
TG	0	genome.wustl.edu	37	8	133899355	133899355	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	8	133899355	133899355	T	G	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.1738	p.F580V	0.997	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				74	0	0	59	7	10.6061
ZNF623	0	genome.wustl.edu	37	8	144733376	144733376	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	8	144733376	144733376	A	G	SNP	ZNF623	ENST00000501748	human	ensembl	74_37	+1	known	missense	c.1334	p.K445R	0.876	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309				94	0	0	83	9	9.78261
PARP10	0	genome.wustl.edu	37	8	145058498	145058498	+	Silent	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	8	145058498	145058498	G	A	SNP	PARP10	ENST00000313028	human	ensembl	74_37	-1	known	silent	c.1560	p.S520	0.912	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685				33	0	0	25	10	28.5714
PARP10	0	genome.wustl.edu	37	8	145059121	145059121	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	8	145059121	145059121	C	G	SNP	PARP10	ENST00000313028	human	ensembl	74_37	-1	known	missense	c.1049	p.S350T	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685				95	0	0	66	12	15.3846
ADCK5	0	genome.wustl.edu	37	8	145608358	145608358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	8	145608358	145608358	C	T	SNP	ADCK5	ENST00000308860	human	ensembl	74_37	+1	known	missense	c.193	p.R65C	0.030	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK5	HGNC	ENSG00000173137				10	0	0	3	4	57.1429
ENSG00000255182	0	genome.wustl.edu	37	8	145722828	145722828	+	Splice_Site	SNP	T	T	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	8	145722828	145722828	T	A	SNP	ENSG00000255182	ENST00000532766	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	CTD-2517M22.14	Clone_based_vega_gene	ENSG00000255182				52	0	0	24	4	14.2857
CSGALNACT1	0	genome.wustl.edu	37	8	19362744	19362744	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	8	19362744	19362744	T	C	SNP	CSGALNACT1	ENST00000311540	human	ensembl	74_37	-1	known	missense	c.602	p.H201R	0.015	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				81	0	0	45	13	22.4138
ADRA1A	0	genome.wustl.edu	37	8	26628025	26628025	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	8	26628025	26628025	T	C	SNP	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	missense	c.1042	p.R348G	0.565	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907				238	0	0	130	30	18.75
GINS4	0	genome.wustl.edu	37	8	41399380	41399380	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	8	41399380	41399380	A	C	SNP	GINS4	ENST00000276533	human	ensembl	74_37	+1	known	missense	c.537	p.Q179H	0.995	pirsf_GINS_Sld5	pfam_GINS_complex,pirsf_GINS_Sld5	-	no_errors	GINS4	HGNC	ENSG00000147536				65	0	0	40	6	13.0435
C8orf34	0	genome.wustl.edu	37	8	69358714	69358714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	8	69358714	69358714	C	T	SNP	C8orf34	ENST00000523686	human	ensembl	74_37	+1	known	missense	c.368	p.S123L	0.004	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084				36	0	0	40	5	11.1111
DPY19L4	0	genome.wustl.edu	37	8	95793379	95793379	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	8	95793379	95793379	T	C	SNP	DPY19L4	ENST00000414645	human	ensembl	74_37	+1	known	missense	c.1700	p.L567P	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L4	HGNC	ENSG00000156162				77	0	0	47	12	20.339
C9orf84	0	genome.wustl.edu	37	9	114466182	114466182	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	9	114466182	114466182	T	G	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	missense	c.2754	p.E918D	0.664	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				38	0	0	17	15	46.875
TLR4	0	genome.wustl.edu	37	9	120475601	120475601	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	9	120475601	120475601	A	C	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.1195	p.T399P	0.035	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				29	0	0	30	3	9.09091
OR1B1	0	genome.wustl.edu	37	9	125391418	125391418	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	9	125391418	125391418	G	T	SNP	OR1B1	ENST00000304833	human	ensembl	74_37	-1	known	missense	c.397	p.H133N	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1B1	HGNC	ENSG00000171484				75	0	0	31	8	20.5128
NELFB	0	genome.wustl.edu	37	9	140151447	140151447	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	9	140151447	140151447	G	T	SNP	NELFB	ENST00000343053	human	ensembl	74_37	+1	known	nonsense	c.538	p.E180*	1.000	pfam_COBRA1	pfam_COBRA1	-	no_errors	NELFB	HGNC	ENSG00000188986				60	0	0	38	15	28.3019
ELAVL2	0	genome.wustl.edu	37	9	23762120	23762120	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	9	23762120	23762120	T	C	SNP	ELAVL2	ENST00000380117	human	ensembl	74_37	-1	known	missense	c.113	p.K38R	1.000	tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL2	HGNC	ENSG00000107105				188	0	0	109	23	17.4242
SPATA31A6	0	genome.wustl.edu	37	9	43625069	43625069	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	9	43625069	43625069	C	T	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.3618	p.M1206I	0.027	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				236	0	0	128	41	24.2604
TPD52L3	0	genome.wustl.edu	37	9	6328606	6328606	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	9	6328606	6328606	C	A	SNP	TPD52L3	ENST00000344545	human	ensembl	74_37	+1	known	missense	c.11	p.A4D	0.006	pfam_TPD52	pfam_TPD52	-	no_errors	TPD52L3	HGNC	ENSG00000170777				121	0	0	107	15	12.2951
IL1RAPL2	0	genome.wustl.edu	37	X	104728346	104728346	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	X	104728346	104728346	G	A	SNP	IL1RAPL2	ENST00000344799	human	ensembl	74_37	+1	known	missense	c.739	p.E247K	1.000	pfscan_Ig-like_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ	-	no_errors	IL1RAPL2	HGNC	ENSG00000189108				47	0	0	22	29	56.8627
TENM1	0	genome.wustl.edu	37	X	124028194	124028194	+	Silent	SNP	T	T	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	X	124028194	124028194	T	C	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	silent	c.486	p.K162	1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				48	0	0	22	23	51.1111
ACTRT1	0	genome.wustl.edu	37	X	127185978	127185978	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	X	127185978	127185978	A	C	SNP	ACTRT1	ENST00000371124	human	ensembl	74_37	-1	known	missense	c.208	p.L70V	0.625	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT1	HGNC	ENSG00000123165				91	0	0	55	27	32.9268
FLNA	0	genome.wustl.edu	37	X	153587984	153587984	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	X	153587984	153587984	C	A	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.4010	p.G1337V	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				36	0	0	4	12	75
RAI2	0	genome.wustl.edu	37	X	17819536	17819536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	X	17819536	17819536	C	T	SNP	RAI2	ENST00000331511	human	ensembl	74_37	-1	known	missense	c.595	p.G199R	0.998	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831				34	0	0	10	11	52.381
MAGEB18	0	genome.wustl.edu	37	X	26157600	26157600	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	X	26157600	26157600	A	C	SNP	MAGEB18	ENST00000325250	human	ensembl	74_37	+1	known	missense	c.498	p.E166D	0.991	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB18	HGNC	ENSG00000176774				11	0	0	5	8	61.5385
LBR	0	genome.wustl.edu	37	1	225592318	225592330	+	Frame_Shift_Del	DEL	CAATACTTACGTG	CAATACTTACGTG	-			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	CAATACTTACGTG	CAATACTTACGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	225592318	225592330	CAATACTTACGTG	-	DEL	LBR	ENST00000272163	human	ensembl	74_37	-1	known	frame_shift_del	c.1574_1562	p.H522fs	0.001:0.004:0.000:0.000:0.520:1.000:1.000:0.997:1.000:1.000:0.993:0.662:0.977	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_DUF1295	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815				42	0	0	49	6	10.9091
PNRC2	0	genome.wustl.edu	37	1	24288296	24288297	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	1	24288296	24288297	-	T	INS	PNRC2	ENST00000334351	human	ensembl	74_37	+1	known	frame_shift_ins	c.349_350	p.S118fs	1.000:1.000	NULL	NULL	-	no_errors	PNRC2	HGNC	ENSG00000189266				19	0	0	28	2	6.66667
CCAR1	0	genome.wustl.edu	37	10	70509285	70509286	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	10	70509285	70509286	GA	-	DEL	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	frame_shift_del	c.961_962	p.R324fs	1.000:1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				33	0	0	26	4	13.3333
NAV3	0	genome.wustl.edu	37	12	78598848	78598848	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	12	78598848	78598848	G	-	DEL	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	frame_shift_del	c.6968	p.S2323fs	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				41	0	0	41	4	8.88889
CRHR1	0	genome.wustl.edu	37	17	43908305	43908308	+	Frame_Shift_Del	DEL	AAGT	AAGT	-			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	17	43908305	43908308	AAGT	-	DEL	CRHR1	ENST00000398285	human	ensembl	74_37	+1	known	frame_shift_del	c.856_857	p.K286fs	1.000:1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF1_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR1	HGNC	ENSG00000120088				79	0	0	59	6	9.23077
LTN1	0	genome.wustl.edu	37	21	30339205	30339206	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	21	30339205	30339206	-	T	INS	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	frame_shift_ins	c.1746_1745	p.N582fs	0.000:0.000	superfamily_ARM-type_fold	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				23	0	0	21	2	8.69565
PLD1	0	genome.wustl.edu	37	3	171455451	171455452	+	Splice_Site	INS	-	-	A			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	3	171455451	171455452	-	A	INS	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	splice_site_ins	c.161-3_161-2	e2-2	0.999:0.901	-	-	-	no_errors	PLD1	HGNC	ENSG00000075651				17	0	0	27	2	6.89655
SMAP1	0	genome.wustl.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	6	71508370	71508370	A	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.506	p.K172fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				9	0	0	7	2	22.2222
ZFP37	0	genome.wustl.edu	37	9	115806416	115806416	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7723-01A-11D-2053-08	TCGA-BR-7723-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5946cac-08ce-4512-823d-6c2fa6e73150	daa716c5-0804-49e0-88e8-811cf079546d	9	115806416	115806416	T	-	DEL	ZFP37	ENST00000553380	human	ensembl	74_37	-1	known	frame_shift_del	c.527	p.N176fs	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866				47	0	0	31	16	34.0426
