Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
HIAT1	0	genome.wustl.edu	37	1	100534100	100534100	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	100534100	100534100	G	A	SNP	HIAT1	ENST00000370152	human	ensembl	74_37	+1	known	silent	c.777	p.P259	0.025	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIAT1	HGNC	ENSG00000156875				156	0	0	71	31	30.3922
SLC30A7	0	genome.wustl.edu	37	1	101440402	101440402	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	101440402	101440402	G	A	SNP	SLC30A7	ENST00000357650	human	ensembl	74_37	+1	novel	missense	c.1120	p.A374T	1.000	pfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A7	HGNC	ENSG00000162695				56	0	0	17	12	41.3793
COL11A1	0	genome.wustl.edu	37	1	103453196	103453196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	103453196	103453196	C	T	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.2531	p.G844E	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				67	0	0	29	7	19.4444
NTNG1	0	genome.wustl.edu	37	1	107867369	107867369	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	107867369	107867369	C	T	SNP	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	missense	c.712	p.R238C	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				59	0	0	27	10	27.027
FAM102B	0	genome.wustl.edu	37	1	109143275	109143275	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	109143275	109143275	A	G	SNP	FAM102B	ENST00000370035	human	ensembl	74_37	+1	known	silent	c.225	p.L75	0.818	pfam_NT-C2	pfam_NT-C2	-	no_errors	FAM102B	HGNC	ENSG00000162636				58	0	0	32	15	31.9149
HENMT1	0	genome.wustl.edu	37	1	109192991	109192991	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	109192991	109192991	G	A	SNP	HENMT1	ENST00000370031	human	ensembl	74_37	-1	known	missense	c.598	p.R200C	0.000	NULL	NULL	-	no_errors	HENMT1	HGNC	ENSG00000162639				55	0	0	34	9	20.9302
PRPF38B	0	genome.wustl.edu	37	1	109235364	109235364	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	109235364	109235364	G	T	SNP	PRPF38B	ENST00000370025	human	ensembl	74_37	+1	known	missense	c.151	p.G51C	1.000	pfam_PRP38	pfam_PRP38	-	no_errors	PRPF38B	HGNC	ENSG00000134186				75	0	0	28	17	37.7778
KCNC4	0	genome.wustl.edu	37	1	110754617	110754617	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	110754617	110754617	G	A	SNP	KCNC4	ENST00000369787	human	ensembl	74_37	+1	known	missense	c.496	p.G166R	0.955	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_K_chnl_volt-dep_Kv3_ID,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.4,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC4	HGNC	ENSG00000116396				11	0	0	5	5	50
KCNA3	0	genome.wustl.edu	37	1	111216961	111216961	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	111216961	111216961	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	silent	c.471	p.D157	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				171	0	0	91	24	20.8696
DDX20	0	genome.wustl.edu	37	1	112302123	112302123	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	112302123	112302123	T	C	SNP	DDX20	ENST00000369702	human	ensembl	74_37	+1	known	silent	c.498	p.I166	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX20	HGNC	ENSG00000064703				109	0	0	58	26	30.9524
B3GALT6	0	genome.wustl.edu	37	1	1168142	1168142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	1168142	1168142	C	T	SNP	B3GALT6	ENST00000379198	human	ensembl	74_37	+1	known	missense	c.484	p.R162W	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT6	HGNC	ENSG00000176022				43	0	0	27	10	27.027
TTF2	0	genome.wustl.edu	37	1	117629087	117629087	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	117629087	117629087	G	T	SNP	TTF2	ENST00000369466	human	ensembl	74_37	+1	known	missense	c.2103	p.K701N	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830				45	0	0	29	13	30.9524
WDR3	0	genome.wustl.edu	37	1	118492448	118492448	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	118492448	118492448	T	A	SNP	WDR3	ENST00000349139	human	ensembl	74_37	+1	known	missense	c.1599	p.S533R	0.730	pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR3	HGNC	ENSG00000065183				34	0	0	19	5	20.8333
NOTCH2	0	genome.wustl.edu	37	1	120497755	120497755	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	120497755	120497755	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	silent	c.2127	p.P709	0.011	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				87	0	0	50	22	30.5556
PRAMEF4	0	genome.wustl.edu	37	1	12943196	12943196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	12943196	12943196	G	A	SNP	PRAMEF4	ENST00000235349	human	ensembl	74_37	-1	known	missense	c.20	p.T7I	0.000	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073				123	0	0	85	6	6.59341
PEX11B	0	genome.wustl.edu	37	1	145518235	145518235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	145518235	145518235	C	T	SNP	PEX11B	ENST00000369306	human	ensembl	74_37	+1	known	missense	c.337	p.R113C	0.455	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11B	HGNC	ENSG00000131779				197	0	0	109	32	22.695
SV2A	0	genome.wustl.edu	37	1	149881071	149881071	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	149881071	149881071	G	A	SNP	SV2A	ENST00000369146	human	ensembl	74_37	-1	known	missense	c.1232	p.S411L	0.997	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2A	HGNC	ENSG00000159164				87	0	0	41	12	22.6415
PRPF3	0	genome.wustl.edu	37	1	150305577	150305577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	150305577	150305577	G	A	SNP	PRPF3	ENST00000324862	human	ensembl	74_37	+1	known	missense	c.635	p.R212Q	1.000	NULL	pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	PRPF3	HGNC	ENSG00000117360				60	0	0	38	12	24
ECM1	0	genome.wustl.edu	37	1	150485747	150485747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	150485747	150485747	G	A	SNP	ECM1	ENST00000369049	human	ensembl	74_37	+1	known	missense	c.1508	p.R503Q	0.806	pfam_ECM1	pfam_ECM1,superfamily_Serum_albumin-like	-	no_errors	ECM1	HGNC	ENSG00000143369				123	1	0.806452	80	28	25.9259
PI4KB	0	genome.wustl.edu	37	1	151280270	151280270	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	151280270	151280270	C	T	SNP	PI4KB	ENST00000271657	human	ensembl	74_37	-1	known	missense	c.998	p.R333Q	1.000	NULL	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393				63	0	0	37	15	28.8462
CGN	0	genome.wustl.edu	37	1	151491113	151491113	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	151491113	151491113	C	T	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	nonsense	c.118	p.R40*	0.869	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				133	0	0	62	26	29.5455
TCHH	0	genome.wustl.edu	37	1	152080843	152080843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	152080843	152080843	C	T	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.4850	p.R1617H	0.018	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				108	0	0	49	24	32.8767
TCHH	0	genome.wustl.edu	37	1	152082357	152082357	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	152082357	152082357	C	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.3336	p.E1112D	0.132	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				143	0	0	79	21	21
S100A4	0	genome.wustl.edu	37	1	153516206	153516206	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	153516206	153516206	C	T	SNP	S100A4	ENST00000468373	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	S100A4	HGNC	ENSG00000196154				150	0	0	77	35	31.25
INTS3	0	genome.wustl.edu	37	1	153730118	153730118	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	153730118	153730118	A	G	SNP	INTS3	ENST00000318967	human	ensembl	74_37	+1	known	missense	c.1028	p.Q343R	1.000	pfam_Int_cplx_su3	pfam_Int_cplx_su3	-	no_errors	INTS3	HGNC	ENSG00000143624				104	0	0	62	21	25.3012
DENND4B	0	genome.wustl.edu	37	1	153904887	153904887	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	153904887	153904887	T	C	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	silent	c.3789	p.A1263	0.823	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				18	0	0	7	8	53.3333
ZBTB7B	0	genome.wustl.edu	37	1	154987334	154987334	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	154987334	154987334	C	T	SNP	ZBTB7B	ENST00000417934	human	ensembl	74_37	+1	known	silent	c.300	p.G100	0.194	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7B	HGNC	ENSG00000160685				105	1	0.943396	47	14	22.9508
TRIM46	0	genome.wustl.edu	37	1	155154492	155154492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	155154492	155154492	G	A	SNP	TRIM46	ENST00000334634	human	ensembl	74_37	+1	known	missense	c.1753	p.V585M	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462				27	0	0	5	4	44.4444
HCN3	0	genome.wustl.edu	37	1	155254532	155254532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	155254532	155254532	G	A	SNP	HCN3	ENST00000368358	human	ensembl	74_37	+1	known	missense	c.1073	p.R358H	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN3	HGNC	ENSG00000143630				46	0	0	29	7	19.4444
PKLR	0	genome.wustl.edu	37	1	155265010	155265010	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	155265010	155265010	C	T	SNP	PKLR	ENST00000342741	human	ensembl	74_37	-1	known	silent	c.591	p.A197	0.130	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase-like_insert_dom,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627				151	0	0	90	29	24.3697
PMF1-BGLAP	0	genome.wustl.edu	37	1	156206195	156206195	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	156206195	156206195	T	G	SNP	PMF1-BGLAP	ENST00000368276	human	ensembl	74_37	+1	known	missense	c.424	p.W142G	0.998	NULL	pfam_Nnf1	-	no_errors	PMF1-BGLAP	HGNC	ENSG00000260238				55	0	0	21	10	32.2581
PAQR6	0	genome.wustl.edu	37	1	156214974	156214974	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	156214974	156214974	C	T	SNP	PAQR6	ENST00000335852	human	ensembl	74_37	-1	known	missense	c.250	p.A84T	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR6	HGNC	ENSG00000160781				102	0	0	52	11	17.4603
SMG5	0	genome.wustl.edu	37	1	156237904	156237904	+	Splice_Site	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	156237904	156237904	A	G	SNP	SMG5	ENST00000361813	human	ensembl	74_37	-1	known	splice_site	c.908+2	e9+2	1.000	-	-	-	no_errors	SMG5	HGNC	ENSG00000198952				94	0	0	47	19	28.7879
RHBG	0	genome.wustl.edu	37	1	156339144	156339144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	156339144	156339144	G	A	SNP	RHBG	ENST00000368246	human	ensembl	74_37	+1	known	missense	c.104	p.R35H	1.000	pfam_NH4_transpt_AmtB-like_dom	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677				43	0	0	16	5	23.8095
PRCC	0	genome.wustl.edu	37	1	156756757	156756757	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	156756757	156756757	C	A	SNP	PRCC	ENST00000271526	human	ensembl	74_37	+1	known	missense	c.874	p.P292T	1.000	NULL	pfam_PRCC	-	no_errors	PRCC	HGNC	ENSG00000143294				74	0	0	43	5	10.4167
FCRL3	0	genome.wustl.edu	37	1	157666085	157666085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	157666085	157666085	G	A	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	missense	c.877	p.R293W	0.550	pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856				124	0	0	61	22	26.506
CD1D	0	genome.wustl.edu	37	1	158151490	158151490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	158151490	158151490	G	A	SNP	CD1D	ENST00000368171	human	ensembl	74_37	+1	known	missense	c.307	p.A103T	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1D	HGNC	ENSG00000158473				59	0	0	46	7	13.2075
ATP1A4	0	genome.wustl.edu	37	1	160136351	160136351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	160136351	160136351	C	T	SNP	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	missense	c.1081	p.R361W	0.019	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				90	0	0	50	24	32.4324
DCAF8	0	genome.wustl.edu	37	1	160188206	160188206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	160188206	160188206	G	A	SNP	DCAF8	ENST00000608310	human	ensembl	74_37	-1	known	missense	c.2047	p.R683W	1.000	NULL	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716				110	0	0	66	29	30.5263
CLCNKB	0	genome.wustl.edu	37	1	16375037	16375037	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	16375037	16375037	G	A	SNP	CLCNKB	ENST00000375679	human	ensembl	74_37	+1	known	silent	c.615	p.A205	0.015	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908				58	0	0	21	9	30
ALDH9A1	0	genome.wustl.edu	37	1	165632255	165632255	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	165632255	165632255	G	A	SNP	ALDH9A1	ENST00000463610	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ALDH9A1	HGNC	ENSG00000143149				69	0	0	28	15	34.8837
POGK	0	genome.wustl.edu	37	1	166819124	166819124	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	166819124	166819124	C	T	SNP	POGK	ENST00000367875	human	ensembl	74_37	+1	known	silent	c.1308	p.H436	0.606	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_Brinker_DNA-bd,pfam_HTH_CenpB_DNA-bd_dom,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Homeodomain-like,smart_Krueppel-associated_box,smart_HTH_CenpB_DNA-bd_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	POGK	HGNC	ENSG00000143157				63	0	0	40	12	23.0769
ILDR2	0	genome.wustl.edu	37	1	166944501	166944501	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	166944501	166944501	T	C	SNP	ILDR2	ENST00000271417	human	ensembl	74_37	-1	known	missense	c.5	p.D2G	0.217	NULL	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR2	HGNC	ENSG00000143195				102	0	0	47	16	25.3968
RCSD1	0	genome.wustl.edu	37	1	167653175	167653175	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	167653175	167653175	G	A	SNP	RCSD1	ENST00000367854	human	ensembl	74_37	+1	known	silent	c.45	p.S15	0.004	NULL	pfam_RCSD	-	no_errors	RCSD1	HGNC	ENSG00000198771				281	0	0	158	68	30.0885
NADK	0	genome.wustl.edu	37	1	1686048	1686048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	1686048	1686048	C	T	SNP	NADK	ENST00000344463	human	ensembl	74_37	-1	known	missense	c.1213	p.G405S	0.000	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	-	no_errors	NADK	HGNC	ENSG00000008130				144	0	0	55	14	20.2899
SELL	0	genome.wustl.edu	37	1	169672458	169672458	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	169672458	169672458	C	A	SNP	SELL	ENST00000236147	human	ensembl	74_37	-1	known	missense	c.929	p.G310V	0.840	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pirsf_L-selectin,pfscan_Sushi_SCR_CCP	pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pirsf_L-selectin,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELL	HGNC	ENSG00000188404				24	0	0	18	4	18.1818
SELE	0	genome.wustl.edu	37	1	169696562	169696562	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	169696562	169696562	T	C	SNP	SELE	ENST00000333360	human	ensembl	74_37	-1	known	missense	c.1573	p.T525A	0.707	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELE	HGNC	ENSG00000007908				87	0	0	40	16	28.5714
SCYL3	0	genome.wustl.edu	37	1	169823861	169823861	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	169823861	169823861	G	A	SNP	SCYL3	ENST00000367770	human	ensembl	74_37	-1	known	silent	c.1719	p.C573	0.760	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457				131	0	0	63	29	31.5217
CROCC	0	genome.wustl.edu	37	1	17297237	17297237	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	17297237	17297237	C	T	SNP	CROCC	ENST00000375541	human	ensembl	74_37	+1	known	missense	c.5759	p.A1920V	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453				34	0	0	15	7	31.8182
SLC9C2	0	genome.wustl.edu	37	1	173494047	173494047	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	173494047	173494047	A	G	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	silent	c.2385	p.G795	0.018	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				92	0	0	60	15	20
GPR52	0	genome.wustl.edu	37	1	174418193	174418193	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	174418193	174418193	T	C	SNP	GPR52	ENST00000367685	human	ensembl	74_37	+1	known	missense	c.944	p.V315A	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR52	HGNC	ENSG00000203737				105	0	0	79	22	21.7822
TNN	0	genome.wustl.edu	37	1	175066629	175066629	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	175066629	175066629	G	T	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	missense	c.1665	p.Q555H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				59	0	0	26	8	23.5294
PADI4	0	genome.wustl.edu	37	1	17634769	17634769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	17634769	17634769	G	A	SNP	PADI4	ENST00000375448	human	ensembl	74_37	+1	known	missense	c.52	p.V18M	1.000	pfam_PAD_N,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI4	HGNC	ENSG00000159339				77	0	0	40	20	33.3333
RASAL2	0	genome.wustl.edu	37	1	178414799	178414799	+	Splice_Site	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	178414799	178414799	T	C	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	splice_site	c.1627+2	e9+2	1.000	-	-	-	no_errors	RASAL2	HGNC	ENSG00000075391				33	0	0	19	3	13.6364
CACNA1E	0	genome.wustl.edu	37	1	181453006	181453006	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	181453006	181453006	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	silent	c.126	p.T42	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				117	0	0	75	24	24.2424
CDC73	0	genome.wustl.edu	37	1	193099372	193099372	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	193099372	193099372	G	A	SNP	CDC73	ENST00000367435	human	ensembl	74_37	+1	known	silent	c.306	p.A102	0.951	NULL	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371				60	0	0	30	13	30.2326
CFHR5	0	genome.wustl.edu	37	1	196977710	196977710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	196977710	196977710	C	T	SNP	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	missense	c.1679	p.A560V	0.000	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389				57	0	0	26	18	40.9091
CRB1	0	genome.wustl.edu	37	1	197411413	197411413	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	197411413	197411413	C	T	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	silent	c.3996	p.C1332	0.980	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				207	1	0.480769	161	37	18.6869
DENND1B	0	genome.wustl.edu	37	1	197621403	197621403	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	197621403	197621403	G	T	SNP	DENND1B	ENST00000367396	human	ensembl	74_37	-1	known	missense	c.409	p.P137T	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047				59	0	0	45	6	11.7647
ZNF281	0	genome.wustl.edu	37	1	200376244	200376244	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	200376244	200376244	A	G	SNP	ZNF281	ENST00000294740	human	ensembl	74_37	-1	known	missense	c.2590	p.S864P	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF281	HGNC	ENSG00000162702				98	0	0	41	26	38.806
PKP1	0	genome.wustl.edu	37	1	201292264	201292264	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	201292264	201292264	A	G	SNP	PKP1	ENST00000263946	human	ensembl	74_37	+1	known	missense	c.1690	p.T564A	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277				138	0	0	97	20	17.094
LMOD1	0	genome.wustl.edu	37	1	201868874	201868874	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	201868874	201868874	G	T	SNP	LMOD1	ENST00000367288	human	ensembl	74_37	-1	known	missense	c.1267	p.H423N	1.000	NULL	pfam_Tropomodulin,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	LMOD1	HGNC	ENSG00000163431				56	0	0	35	13	27.0833
PLA2G2A	0	genome.wustl.edu	37	1	20304962	20304962	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	20304962	20304962	C	T	SNP	PLA2G2A	ENST00000375111	human	ensembl	74_37	-1	known	silent	c.96	p.T32	0.001	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	PLA2G2A	HGNC	ENSG00000188257				44	0	0	28	7	20
ATP2B4	0	genome.wustl.edu	37	1	203672793	203672793	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	203672793	203672793	C	T	SNP	ATP2B4	ENST00000357681	human	ensembl	74_37	+1	known	silent	c.951	p.D317	0.997	pfam_ATPase_P-typ_transduc_dom_A	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668				198	0	0	114	31	21.3793
PIK3C2B	0	genome.wustl.edu	37	1	204438765	204438765	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	204438765	204438765	A	G	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	missense	c.166	p.S56P	0.427	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				68	0	0	33	14	29.7872
LRRN2	0	genome.wustl.edu	37	1	204588874	204588874	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	204588874	204588874	G	A	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.247	p.R83C	0.010	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				94	0	0	47	20	29.8507
NFASC	0	genome.wustl.edu	37	1	204951139	204951139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	204951139	204951139	G	A	SNP	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	missense	c.2461	p.G821R	0.999	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				22	0	0	12	8	40
TMCC2	0	genome.wustl.edu	37	1	205210873	205210873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	205210873	205210873	C	T	SNP	TMCC2	ENST00000358024	human	ensembl	74_37	+1	known	missense	c.448	p.R150C	1.000	NULL	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069				63	0	0	24	12	33.3333
TMCC2	0	genome.wustl.edu	37	1	205211130	205211130	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	205211130	205211130	C	T	SNP	TMCC2	ENST00000358024	human	ensembl	74_37	+1	known	silent	c.705	p.N235	0.017	NULL	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069				50	0	0	35	6	14.6341
IL10	0	genome.wustl.edu	37	1	206943240	206943240	+	Splice_Site	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	206943240	206943240	C	T	SNP	IL10	ENST00000423557	human	ensembl	74_37	-1	known	splice_site	c.379-1	e4-1	1.000	-	-	-	no_errors	IL10	HGNC	ENSG00000136634				43	0	0	32	3	8.57143
CR1	0	genome.wustl.edu	37	1	207739262	207739262	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	207739262	207739262	T	C	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	missense	c.3946	p.C1316R	0.873	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				101	0	0	58	24	29.2683
MUL1	0	genome.wustl.edu	37	1	20827268	20827268	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	20827268	20827268	T	C	SNP	MUL1	ENST00000264198	human	ensembl	74_37	-1	known	missense	c.974	p.E325G	0.991	pfscan_Znf_RING	pfam_MULAN,pfscan_Znf_RING	-	no_errors	MUL1	HGNC	ENSG00000090432				82	0	0	42	16	27.5862
ECE1	0	genome.wustl.edu	37	1	21605716	21605716	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	21605716	21605716	C	T	SNP	ECE1	ENST00000374893	human	ensembl	74_37	-1	known	missense	c.248	p.C83Y	0.926	NULL	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298				108	0	0	80	5	5.88235
USH2A	0	genome.wustl.edu	37	1	216073455	216073455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	216073455	216073455	G	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.7556	p.A2519V	0.010	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				89	0	0	56	18	24.3243
USH2A	0	genome.wustl.edu	37	1	216258044	216258044	+	Silent	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	216258044	216258044	T	G	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.5163	p.G1721	0.676	superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				82	0	0	41	15	26.7857
USP48	0	genome.wustl.edu	37	1	22048163	22048163	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	22048163	22048163	C	T	SNP	USP48	ENST00000308271	human	ensembl	74_37	-1	known	silent	c.1743	p.L581	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				30	0	0	11	5	31.25
HSPG2	0	genome.wustl.edu	37	1	22157779	22157779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	22157779	22157779	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.11491	p.V3831I	0.006	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				143	0	0	83	37	30.8333
TP53BP2	0	genome.wustl.edu	37	1	223976852	223976852	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	223976852	223976852	T	C	SNP	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	silent	c.3021	p.S1007	0.045	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514				69	0	0	50	24	32.4324
TMEM63A	0	genome.wustl.edu	37	1	226053631	226053631	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	226053631	226053631	C	A	SNP	TMEM63A	ENST00000366835	human	ensembl	74_37	-1	known	missense	c.712	p.D238Y	0.008	NULL	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187				47	0	0	24	13	35.1351
JMJD4	0	genome.wustl.edu	37	1	227923089	227923089	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	227923089	227923089	C	A	SNP	JMJD4	ENST00000366758	human	ensembl	74_37	-1	known	missense	c.24	p.Q8H	0.002	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD4	HGNC	ENSG00000081692				17	0	0	14	3	17.6471
OBSCN	0	genome.wustl.edu	37	1	228494839	228494839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	228494839	228494839	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.12164	p.T4055M	0.020	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				94	0	0	54	19	26.0274
GALNT2	0	genome.wustl.edu	37	1	230391063	230391063	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	230391063	230391063	C	T	SNP	GALNT2	ENST00000366672	human	ensembl	74_37	+1	known	missense	c.1109	p.P370L	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT2	HGNC	ENSG00000143641				115	0	0	65	24	26.9663
PGBD5	0	genome.wustl.edu	37	1	230492718	230492718	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	230492718	230492718	G	A	SNP	PGBD5	ENST00000321327	human	ensembl	74_37	-1	known	silent	c.771	p.H257	0.361	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614				80	0	0	37	11	22.9167
TRIM67	0	genome.wustl.edu	37	1	231337127	231337127	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	231337127	231337127	C	T	SNP	TRIM67	ENST00000366652	human	ensembl	74_37	+1	known	silent	c.1398	p.R466	0.693	smart_Bbox_C	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283				24	0	0	6	3	33.3333
MAP10	0	genome.wustl.edu	37	1	232942219	232942219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	232942219	232942219	C	T	SNP	MAP10	ENST00000418460	human	ensembl	74_37	+1	known	missense	c.1450	p.R484C	0.000	NULL	NULL	-	no_errors	MAP10	HGNC	ENSG00000212916				48	0	0	17	10	37.037
NTPCR	0	genome.wustl.edu	37	1	233091397	233091397	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	233091397	233091397	G	A	SNP	NTPCR	ENST00000366628	human	ensembl	74_37	+1	known	silent	c.129	p.Q43	0.999	pfam_Nuc-triphosphatase_THEP1,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Nuc-triphosphatase_THEP1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NTPCR	HGNC	ENSG00000135778				73	0	0	39	10	20.4082
KIAA1804	0	genome.wustl.edu	37	1	233518334	233518334	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	233518334	233518334	G	T	SNP	KIAA1804	ENST00000366624	human	ensembl	74_37	+1	known	silent	c.2988	p.V996	0.071	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MLK4	Uniprot_gn	ENSG00000143674				117	0	0	43	28	39.4366
LYST	0	genome.wustl.edu	37	1	235973208	235973208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	235973208	235973208	C	T	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.910	p.D304N	0.403	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				27	0	0	16	7	30.4348
HEATR1	0	genome.wustl.edu	37	1	236740202	236740202	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	236740202	236740202	G	A	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	missense	c.2803	p.R935C	0.992	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				88	0	0	50	11	18.0328
ACTN2	0	genome.wustl.edu	37	1	236899013	236899013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	236899013	236899013	C	T	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.776	p.A259V	1.000	superfamily_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				43	0	0	30	7	18.9189
OPN3	0	genome.wustl.edu	37	1	241803320	241803320	+	Silent	SNP	G	G	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	241803320	241803320	G	C	SNP	OPN3	ENST00000366554	human	ensembl	74_37	-1	known	silent	c.237	p.L79	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	OPN3	HGNC	ENSG00000054277				39	0	0	19	10	34.4828
MYOM3	0	genome.wustl.edu	37	1	24383880	24383880	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	24383880	24383880	C	T	SNP	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	missense	c.4297	p.E1433K	0.897	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM3	HGNC	ENSG00000142661				59	0	0	30	15	33.3333
OR14K1	0	genome.wustl.edu	37	1	247902023	247902023	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	247902023	247902023	C	T	SNP	OR14K1	ENST00000283225	human	ensembl	74_37	+1	known	missense	c.107	p.A36V	0.011	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14K1	HGNC	ENSG00000153230				69	0	0	37	19	33.9286
OR2M5	0	genome.wustl.edu	37	1	248309326	248309326	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	248309326	248309326	C	T	SNP	OR2M5	ENST00000366476	human	ensembl	74_37	+1	known	missense	c.877	p.R293C	0.180	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727				102	0	0	55	24	30.3797
OR2T33	0	genome.wustl.edu	37	1	248436402	248436402	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	248436402	248436402	A	T	SNP	OR2T33	ENST00000318021	human	ensembl	74_37	-1	known	missense	c.715	p.C239S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212				39	0	0	22	6	21.4286
SH3BP5L	0	genome.wustl.edu	37	1	249106454	249106454	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	249106454	249106454	C	T	SNP	SH3BP5L	ENST00000366472	human	ensembl	74_37	-1	known	missense	c.827	p.R276H	1.000	pfam_SH3-bd_5	pfam_SH3-bd_5	-	no_errors	SH3BP5L	HGNC	ENSG00000175137				44	0	0	34	8	19.0476
TNFRSF14	0	genome.wustl.edu	37	1	2493160	2493160	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	2493160	2493160	C	T	SNP	TNFRSF14	ENST00000355716	human	ensembl	74_37	+1	known	silent	c.600	p.H200	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_14,prints_Fas_rcpt	-	no_errors	TNFRSF14	HGNC	ENSG00000157873				87	0	0	53	13	19.697
SEPN1	0	genome.wustl.edu	37	1	26131655	26131655	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	26131655	26131655	C	T	SNP	SEPN1	ENST00000354177	human	ensembl	74_37	+1	known	silent	c.324	p.C108	0.000	NULL	pfscan_EF_hand_dom	-	no_errors	SEPN1	HGNC	ENSG00000162430				113	0	0	58	24	29.2683
UBXN11	0	genome.wustl.edu	37	1	26609150	26609150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	26609150	26609150	C	T	SNP	UBXN11	ENST00000374221	human	ensembl	74_37	-1	known	missense	c.1282	p.A428T	0.176	pfscan_UBX	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062				65	0	0	25	15	37.5
ARID1A	0	genome.wustl.edu	37	1	27101099	27101099	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	27101099	27101099	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.4381	p.R1461*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				126	0	0	53	30	36.1446
NR0B2	0	genome.wustl.edu	37	1	27238427	27238427	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	27238427	27238427	G	A	SNP	NR0B2	ENST00000254227	human	ensembl	74_37	-1	known	missense	c.683	p.P228L	0.991	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	-	no_errors	NR0B2	HGNC	ENSG00000131910				190	0	0	95	41	30.1471
ACTRT2	0	genome.wustl.edu	37	1	2939331	2939331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	2939331	2939331	G	A	SNP	ACTRT2	ENST00000378404	human	ensembl	74_37	+1	known	missense	c.1081	p.A361T	0.001	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT2	HGNC	ENSG00000169717				216	0	0	128	43	25.1462
PTPRU	0	genome.wustl.edu	37	1	29650164	29650164	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	29650164	29650164	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.4006	p.V1336M	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				38	0	0	38	3	7.31707
COL16A1	0	genome.wustl.edu	37	1	32163529	32163529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	32163529	32163529	G	A	SNP	COL16A1	ENST00000271069	human	ensembl	74_37	-1	known	missense	c.635	p.A212V	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636				91	0	0	52	20	27.7778
PRDM16	0	genome.wustl.edu	37	1	3319366	3319366	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	3319366	3319366	T	C	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	missense	c.688	p.F230L	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				59	0	0	44	3	6.38298
KIAA1522	0	genome.wustl.edu	37	1	33235543	33235543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	33235543	33235543	C	T	SNP	KIAA1522	ENST00000401073	human	ensembl	74_37	+1	known	missense	c.763	p.R255C	0.492	NULL	NULL	-	no_errors	KIAA1522	HGNC	ENSG00000162522				22	0	0	11	3	21.4286
S100PBP	0	genome.wustl.edu	37	1	33291708	33291708	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	33291708	33291708	G	A	SNP	S100PBP	ENST00000373475	human	ensembl	74_37	+1	known	missense	c.8	p.C3Y	1.000	NULL	NULL	-	no_errors	S100PBP	HGNC	ENSG00000116497				84	0	0	53	22	29.3333
TMEM54	0	genome.wustl.edu	37	1	33360288	33360288	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	33360288	33360288	G	A	SNP	TMEM54	ENST00000482771	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMEM54	HGNC	ENSG00000121900				15	0	0	7	3	30
RNF19B	0	genome.wustl.edu	37	1	33402698	33402698	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	33402698	33402698	G	T	SNP	RNF19B	ENST00000373456	human	ensembl	74_37	-1	known	silent	c.1908	p.P636	0.984	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19B	HGNC	ENSG00000116514				196	0	0	105	45	30
RNF19B	0	genome.wustl.edu	37	1	33407887	33407887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	33407887	33407887	C	T	SNP	RNF19B	ENST00000373456	human	ensembl	74_37	-1	known	missense	c.1579	p.G527S	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19B	HGNC	ENSG00000116514				144	0	0	74	23	23.7113
MEGF6	0	genome.wustl.edu	37	1	3425195	3425195	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	3425195	3425195	G	A	SNP	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	silent	c.1587	p.N529	0.975	smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				66	0	0	34	13	27.6596
MEGF6	0	genome.wustl.edu	37	1	3425664	3425664	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	3425664	3425664	G	A	SNP	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	silent	c.1503	p.G501	0.981	NULL	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				17	0	0	2	3	60
GJB3	0	genome.wustl.edu	37	1	35250436	35250436	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	35250436	35250436	C	T	SNP	GJB3	ENST00000373362	human	ensembl	74_37	+1	known	silent	c.73	p.L25	1.000	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin31	-	no_errors	GJB3	HGNC	ENSG00000188910				65	0	0	41	11	21.1538
SFPQ	0	genome.wustl.edu	37	1	35650166	35650166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	35650166	35650166	G	A	SNP	SFPQ	ENST00000357214	human	ensembl	74_37	-1	known	missense	c.2015	p.A672V	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SFPQ	HGNC	ENSG00000116560				69	0	0	56	23	29.1139
NCDN	0	genome.wustl.edu	37	1	36026428	36026428	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	36026428	36026428	A	G	SNP	NCDN	ENST00000356090	human	ensembl	74_37	+1	known	missense	c.676	p.S226G	1.000	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129				77	0	0	33	20	37.7358
ZC3H12A	0	genome.wustl.edu	37	1	37948942	37948942	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	37948942	37948942	A	G	SNP	ZC3H12A	ENST00000373087	human	ensembl	74_37	+1	known	silent	c.1530	p.P510	0.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874				298	0	0	241	14	5.4902
C1orf109	0	genome.wustl.edu	37	1	38155444	38155444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	38155444	38155444	G	A	SNP	C1orf109	ENST00000358011	human	ensembl	74_37	-1	known	missense	c.109	p.P37S	0.996	NULL	NULL	-	no_errors	C1orf109	HGNC	ENSG00000116922				47	0	0	27	13	32.5
GJA9	0	genome.wustl.edu	37	1	39341336	39341336	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	39341336	39341336	A	G	SNP	GJA9	ENST00000357771	human	ensembl	74_37	-1	known	silent	c.435	p.N145	0.937	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA9	HGNC	ENSG00000131233				113	0	0	67	8	10.6667
MACF1	0	genome.wustl.edu	37	1	39888401	39888401	+	Splice_Site	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	39888401	39888401	G	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	splice_site	c.9793-1	e54-1	1.000	-	-	-	no_errors	MACF1	HGNC	ENSG00000127603				101	0	0	84	5	5.61798
HIVEP3	0	genome.wustl.edu	37	1	42048952	42048952	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	42048952	42048952	C	T	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	missense	c.1517	p.R506Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				146	0	0	67	22	24.7191
HIVEP3	0	genome.wustl.edu	37	1	42049693	42049693	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	42049693	42049693	T	C	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	missense	c.776	p.Y259C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				78	0	0	43	12	21.8182
SLC2A1	0	genome.wustl.edu	37	1	43394951	43394951	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	43394951	43394951	G	A	SNP	SLC2A1	ENST00000426263	human	ensembl	74_37	-1	known	missense	c.902	p.A301V	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394				37	0	0	10	3	23.0769
SLC6A9	0	genome.wustl.edu	37	1	44466469	44466469	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	44466469	44466469	G	A	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	silent	c.1725	p.C575	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517				88	0	0	48	16	25
KLF17	0	genome.wustl.edu	37	1	44595230	44595230	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	44595230	44595230	G	A	SNP	KLF17	ENST00000372299	human	ensembl	74_37	+1	known	missense	c.287	p.R96H	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF17	HGNC	ENSG00000171872				176	0	0	98	37	27.4074
EIF2B3	0	genome.wustl.edu	37	1	45407195	45407195	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	45407195	45407195	T	C	SNP	EIF2B3	ENST00000360403	human	ensembl	74_37	-1	known	missense	c.437	p.K146R	1.000	NULL	pfam_NTP_transferase	-	no_errors	EIF2B3	HGNC	ENSG00000070785				88	0	0	49	16	24.6154
STIL	0	genome.wustl.edu	37	1	47716920	47716920	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	47716920	47716920	A	G	SNP	STIL	ENST00000371877	human	ensembl	74_37	-1	known	missense	c.3755	p.I1252T	0.049	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473				119	0	0	44	31	41.3333
ZCCHC11	0	genome.wustl.edu	37	1	52961127	52961127	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	52961127	52961127	A	G	SNP	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	missense	c.1238	p.V413A	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				51	0	0	31	11	26.1905
GPX7	0	genome.wustl.edu	37	1	53068182	53068182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	53068182	53068182	G	A	SNP	GPX7	ENST00000361314	human	ensembl	74_37	+1	known	missense	c.101	p.R34Q	1.000	pfam_Glutathione_peroxidase,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,tigrfam_Glut_perox_Gpx7	pfam_Glutathione_peroxidase,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase,tigrfam_Glut_perox_Gpx7	-	no_errors	GPX7	HGNC	ENSG00000116157				23	0	0	10	5	33.3333
NDC1	0	genome.wustl.edu	37	1	54266463	54266463	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	54266463	54266463	A	G	SNP	NDC1	ENST00000371429	human	ensembl	74_37	-1	known	silent	c.1125	p.G375	1.000	pfam_Nucleoporin_prot_Ndc1/Nup	pfam_Nucleoporin_prot_Ndc1/Nup	-	no_errors	NDC1	HGNC	ENSG00000058804				56	0	0	28	17	37.7778
TTC4	0	genome.wustl.edu	37	1	55186845	55186845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	55186845	55186845	G	A	SNP	TTC4	ENST00000371281	human	ensembl	74_37	+1	known	missense	c.401	p.R134H	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC4	HGNC	ENSG00000243725				64	0	0	28	10	26.3158
USP24	0	genome.wustl.edu	37	1	55548945	55548945	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	55548945	55548945	C	A	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	missense	c.6495	p.Q2165H	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				46	0	0	37	3	7.5
PPAP2B	0	genome.wustl.edu	37	1	57002627	57002627	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	57002627	57002627	C	T	SNP	PPAP2B	ENST00000371250	human	ensembl	74_37	-1	known	silent	c.297	p.A99	1.000	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAP2B	HGNC	ENSG00000162407				170	0	0	100	39	28.0576
CHD5	0	genome.wustl.edu	37	1	6184642	6184642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	6184642	6184642	G	A	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	missense	c.4474	p.R1492W	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				42	0	0	22	5	18.5185
ALG6	0	genome.wustl.edu	37	1	63876940	63876940	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	63876940	63876940	C	T	SNP	ALG6	ENST00000371108	human	ensembl	74_37	+1	known	silent	c.618	p.H206	0.847	pfam_Glyco_trans_ALG6/ALG8	pfam_Glyco_trans_ALG6/ALG8	-	no_errors	ALG6	HGNC	ENSG00000088035				85	0	0	38	12	24
CACHD1	0	genome.wustl.edu	37	1	65157288	65157288	+	RNA	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	65157288	65157288	G	T	SNP	CACHD1	ENST00000470527	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CACHD1	HGNC	ENSG00000158966				17	0	0	17	7	29.1667
RAVER2	0	genome.wustl.edu	37	1	65273087	65273087	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	65273087	65273087	C	T	SNP	RAVER2	ENST00000294428	human	ensembl	74_37	+1	known	missense	c.1610	p.A537V	0.002	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RAVER2	HGNC	ENSG00000162437				52	0	0	38	2	5
LEPR	0	genome.wustl.edu	37	1	66088619	66088619	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	66088619	66088619	G	A	SNP	LEPR	ENST00000349533	human	ensembl	74_37	+1	known	silent	c.2628	p.P876	0.995	NULL	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LEPR	HGNC	ENSG00000116678				49	0	0	25	7	21.875
ZNF644	0	genome.wustl.edu	37	1	91405532	91405532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	91405532	91405532	C	T	SNP	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	missense	c.1379	p.R460H	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				71	0	0	50	18	26.4706
GOT1	0	genome.wustl.edu	37	10	101180424	101180424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	101180424	101180424	C	T	SNP	GOT1	ENST00000370508	human	ensembl	74_37	-1	known	missense	c.257	p.R86H	0.704	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	-	no_errors	GOT1	HGNC	ENSG00000120053				73	0	0	34	9	20.9302
FBXW4	0	genome.wustl.edu	37	10	103372106	103372106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	103372106	103372106	C	T	SNP	FBXW4	ENST00000331272	human	ensembl	74_37	-1	known	missense	c.965	p.R322H	0.997	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW4	HGNC	ENSG00000107829				60	0	0	42	11	20.7547
MGEA5	0	genome.wustl.edu	37	10	103569961	103569961	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	103569961	103569961	A	T	SNP	MGEA5	ENST00000361464	human	ensembl	74_37	-1	known	missense	c.460	p.L154M	0.984	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF,superfamily_Acyl_CoA_acyltransferase	-	no_errors	MGEA5	HGNC	ENSG00000198408				94	0	0	47	16	25.3968
C10orf76	0	genome.wustl.edu	37	10	103766310	103766310	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	103766310	103766310	C	T	SNP	C10orf76	ENST00000370033	human	ensembl	74_37	-1	known	silent	c.1035	p.P345	0.020	superfamily_ARM-type_fold	pfam_DUF1741,superfamily_ARM-type_fold	-	no_errors	C10orf76	HGNC	ENSG00000120029				143	0	0	92	35	27.5591
GBF1	0	genome.wustl.edu	37	10	104122262	104122262	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	104122262	104122262	A	G	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	missense	c.1714	p.T572A	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				168	0	0	145	13	8.22785
NFKB2	0	genome.wustl.edu	37	10	104161010	104161010	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	104161010	104161010	G	A	SNP	NFKB2	ENST00000369966	human	ensembl	74_37	+1	known	silent	c.2145	p.S715	0.892	NULL	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150				117	0	0	52	24	31.5789
TMEM180	0	genome.wustl.edu	37	10	104230750	104230750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	104230750	104230750	G	A	SNP	TMEM180	ENST00000238936	human	ensembl	74_37	+1	known	missense	c.580	p.A194T	0.075	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM180	HGNC	ENSG00000138111				149	0	0	59	45	43.2692
PDCD11	0	genome.wustl.edu	37	10	105174079	105174079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	105174079	105174079	G	A	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	missense	c.1363	p.V455M	0.033	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				31	0	0	30	4	11.7647
ITPRIP	0	genome.wustl.edu	37	10	106074505	106074505	+	Silent	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	106074505	106074505	C	A	SNP	ITPRIP	ENST00000278071	human	ensembl	74_37	-1	known	silent	c.1305	p.T435	0.034	NULL	NULL	-	no_errors	ITPRIP	HGNC	ENSG00000148841				44	0	0	16	12	42.8571
SORCS1	0	genome.wustl.edu	37	10	108466322	108466322	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	108466322	108466322	G	A	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.1214	p.P405L	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				83	0	0	42	16	27.5862
ADD3	0	genome.wustl.edu	37	10	111872584	111872584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	111872584	111872584	G	A	SNP	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	missense	c.245	p.G82D	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				106	0	0	58	18	23.6842
WDR37	0	genome.wustl.edu	37	10	1149661	1149661	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	1149661	1149661	C	T	SNP	WDR37	ENST00000263150	human	ensembl	74_37	+1	known	silent	c.846	p.G282	0.416	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR37	HGNC	ENSG00000047056				111	0	0	66	16	19.5122
DCLRE1A	0	genome.wustl.edu	37	10	115612924	115612924	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	115612924	115612924	G	A	SNP	DCLRE1A	ENST00000361384	human	ensembl	74_37	-1	known	silent	c.18	p.S6	0.536	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924				16	0	0	7	3	30
ABLIM1	0	genome.wustl.edu	37	10	116361697	116361697	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	116361697	116361697	G	T	SNP	ABLIM1	ENST00000277895	human	ensembl	74_37	-1	known	missense	c.268	p.H90N	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM1	HGNC	ENSG00000099204				70	0	0	52	12	18.75
FAM160B1	0	genome.wustl.edu	37	10	116608484	116608484	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	116608484	116608484	C	T	SNP	FAM160B1	ENST00000369248	human	ensembl	74_37	+1	known	silent	c.1791	p.D597	0.837	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B1	HGNC	ENSG00000151553				43	0	0	29	10	25.641
HSPA12A	0	genome.wustl.edu	37	10	118434405	118434405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	118434405	118434405	G	A	SNP	HSPA12A	ENST00000369209	human	ensembl	74_37	-1	known	missense	c.1915	p.R639W	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868				102	0	0	58	18	23.6842
PDZD8	0	genome.wustl.edu	37	10	119078467	119078467	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	119078467	119078467	G	T	SNP	PDZD8	ENST00000334464	human	ensembl	74_37	-1	known	silent	c.1014	p.S338	1.000	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650				74	0	0	75	5	6.25
BAG3	0	genome.wustl.edu	37	10	121436479	121436479	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	121436479	121436479	G	T	SNP	BAG3	ENST00000369085	human	ensembl	74_37	+1	known	missense	c.1413	p.E471D	0.985	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	pfam_BAG_domain,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_BAG_domain,pfscan_BAG_domain,pfscan_WW_dom	-	no_errors	BAG3	HGNC	ENSG00000151929				48	0	0	27	8	22.8571
MCMBP	0	genome.wustl.edu	37	10	121590963	121590963	+	RNA	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	121590963	121590963	T	C	SNP	MCMBP	ENST00000466047	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MCMBP	HGNC	ENSG00000197771				42	0	0	35	11	23.913
WDR11	0	genome.wustl.edu	37	10	122626116	122626116	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	122626116	122626116	C	T	SNP	WDR11	ENST00000263461	human	ensembl	74_37	+1	known	nonsense	c.1030	p.R344*	0.997	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008				126	0	0	75	29	27.8846
PTPRE	0	genome.wustl.edu	37	10	129861404	129861404	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	129861404	129861404	C	T	SNP	PTPRE	ENST00000254667	human	ensembl	74_37	+1	known	missense	c.683	p.A228V	0.972	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRE	HGNC	ENSG00000132334				50	0	0	28	12	30
UCMA	0	genome.wustl.edu	37	10	13276241	13276241	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	13276241	13276241	G	A	SNP	UCMA	ENST00000378681	human	ensembl	74_37	-1	known	silent	c.18	p.A6	0.004	NULL	NULL	-	no_errors	UCMA	HGNC	ENSG00000165623				46	0	0	39	18	31.5789
GPR123	0	genome.wustl.edu	37	10	134906618	134906618	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	134906618	134906618	T	C	SNP	GPR123	ENST00000607359	human	ensembl	74_37	+1	putative	missense	c.1889	p.L630P	0.002	NULL	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177				22	0	0	10	3	23.0769
ADAM8	0	genome.wustl.edu	37	10	135084451	135084451	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	135084451	135084451	C	A	SNP	ADAM8	ENST00000445355	human	ensembl	74_37	-1	known	missense	c.1498	p.G500W	0.007	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,pfam_ADAM_Cys-rich,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM8	HGNC	ENSG00000151651				59	0	0	21	11	34.375
SPRN	0	genome.wustl.edu	37	10	135237144	135237144	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	135237144	135237144	C	T	SNP	SPRN	ENST00000414069	human	ensembl	74_37	-1	known	silent	c.42	p.A14	0.000	NULL	NULL	-	no_errors	SPRN	HGNC	ENSG00000203772				14	0	0	11	2	15.3846
FAM107B	0	genome.wustl.edu	37	10	14816291	14816291	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	14816291	14816291	G	A	SNP	FAM107B	ENST00000181796	human	ensembl	74_37	-1	known	silent	c.372	p.H124	0.168	NULL	pfam_DUF1151	-	no_errors	FAM107B	HGNC	ENSG00000065809				103	0	0	47	23	32.8571
RPP38	0	genome.wustl.edu	37	10	15145361	15145361	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	15145361	15145361	G	A	SNP	RPP38	ENST00000378197	human	ensembl	74_37	+1	known	silent	c.48	p.T16	0.022	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	RPP38	HGNC	ENSG00000152464				103	0	0	49	18	26.8657
CUBN	0	genome.wustl.edu	37	10	17146512	17146512	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	17146512	17146512	A	G	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.1323	p.C441	0.962	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				54	0	0	32	6	15.7895
VIM	0	genome.wustl.edu	37	10	17275857	17275857	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	17275857	17275857	G	A	SNP	VIM	ENST00000224237	human	ensembl	74_37	+1	known	missense	c.809	p.R270H	0.998	pfam_IF,superfamily_Prefoldin	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	VIM	HGNC	ENSG00000026025				43	0	0	17	13	43.3333
NEBL	0	genome.wustl.edu	37	10	21106597	21106597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	21106597	21106597	G	A	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	missense	c.2080	p.R694W	0.324	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				103	0	0	48	23	32.3944
NEBL	0	genome.wustl.edu	37	10	21108359	21108359	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	21108359	21108359	C	T	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	silent	c.2049	p.L683	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				199	0	0	83	45	35.1562
ACBD5	0	genome.wustl.edu	37	10	27499857	27499857	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	27499857	27499857	C	A	SNP	ACBD5	ENST00000375888	human	ensembl	74_37	-1	known	nonsense	c.1117	p.G373*	1.000	pirsf_M-assoc_diazepam-bd-inh	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897				234	0	0	221	25	10.1626
MPP7	0	genome.wustl.edu	37	10	28378678	28378678	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	28378678	28378678	C	T	SNP	MPP7	ENST00000337532	human	ensembl	74_37	-1	known	missense	c.1045	p.A349T	1.000	superfamily_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_SH3_domain	-	no_errors	MPP7	HGNC	ENSG00000150054				170	0	0	132	8	5.71429
ENSG00000212411	0	genome.wustl.edu	37	10	29864309	29864309	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	29864309	29864309	C	T	SNP	ENSG00000212411	ENST00000391109	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.002	-	-	-	no_errors	SNORD115	RFAM	ENSG00000212411				33	0	0	22	3	12
KIAA1462	0	genome.wustl.edu	37	10	30316208	30316208	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	30316208	30316208	C	A	SNP	KIAA1462	ENST00000375377	human	ensembl	74_37	-1	known	nonsense	c.2869	p.R957*	0.000	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757				83	0	0	50	22	30.5556
ZNF438	0	genome.wustl.edu	37	10	31134324	31134324	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	31134324	31134324	C	A	SNP	ZNF438	ENST00000361310	human	ensembl	74_37	-1	known	nonsense	c.2053	p.G685*	0.771	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621				96	0	0	56	22	28.2051
C10orf68	0	genome.wustl.edu	37	10	33000652	33000652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	33000652	33000652	C	T	SNP	C10orf68	ENST00000375025	human	ensembl	74_37	+1	known	missense	c.484	p.R162C	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076				32	0	0	24	9	27.2727
FZD8	0	genome.wustl.edu	37	10	35928685	35928685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	35928685	35928685	C	T	SNP	FZD8	ENST00000374694	human	ensembl	74_37	-1	known	missense	c.1673	p.R558H	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD8	HGNC	ENSG00000177283				60	0	0	20	6	23.0769
ZFAND4	0	genome.wustl.edu	37	10	46122477	46122477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	46122477	46122477	C	T	SNP	ZFAND4	ENST00000344646	human	ensembl	74_37	-1	known	missense	c.794	p.R265H	1.000	NULL	pfam_Ubiquitin_dom,pfam_Znf_AN1,smart_Ubiquitin_dom,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	ZFAND4	HGNC	ENSG00000172671				107	1	0.925926	52	13	20
NPY4R	0	genome.wustl.edu	37	10	47087154	47087154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	47087154	47087154	C	T	SNP	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	missense	c.371	p.S124L	0.993	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174				317	0	0	176	38	17.757
GDF10	0	genome.wustl.edu	37	10	48429172	48429172	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	48429172	48429172	G	A	SNP	GDF10	ENST00000224605	human	ensembl	74_37	-1	known	silent	c.714	p.S238	0.000	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	GDF10	HGNC	ENSG00000107623				23	0	0	10	6	37.5
SLC18A3	0	genome.wustl.edu	37	10	50819158	50819158	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	50819158	50819158	C	T	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	silent	c.372	p.I124	0.990	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				162	0	0	66	30	31.25
PCDH15	0	genome.wustl.edu	37	10	55973753	55973753	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	55973753	55973753	A	G	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	silent	c.1041	p.L347	0.985	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				85	0	0	35	12	25.5319
PCDH15	0	genome.wustl.edu	37	10	55973754	55973754	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	55973754	55973754	A	C	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.1040	p.L347R	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				84	0	0	44	5	10.2041
PCDH15	0	genome.wustl.edu	37	10	56077174	56077174	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	56077174	56077174	G	A	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	nonsense	c.733	p.R245*	0.980	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				132	0	0	95	40	29.6296
BICC1	0	genome.wustl.edu	37	10	60273020	60273020	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	60273020	60273020	G	A	SNP	BICC1	ENST00000373886	human	ensembl	74_37	+1	known	silent	c.117	p.A39	0.997	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870				58	0	0	21	14	40
HKDC1	0	genome.wustl.edu	37	10	71007271	71007271	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	71007271	71007271	G	A	SNP	HKDC1	ENST00000354624	human	ensembl	74_37	+1	known	missense	c.1187	p.R396H	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510				86	0	0	45	20	30.7692
TACR2	0	genome.wustl.edu	37	10	71175863	71175863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	71175863	71175863	C	T	SNP	TACR2	ENST00000373306	human	ensembl	74_37	-1	known	missense	c.217	p.V73I	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK2_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	TACR2	HGNC	ENSG00000075073				41	0	0	15	12	44.4444
COL13A1	0	genome.wustl.edu	37	10	71562436	71562436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	71562436	71562436	C	T	SNP	COL13A1	ENST00000356340	human	ensembl	74_37	+1	known	missense	c.257	p.T86M	0.997	NULL	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467				327	0	0	154	51	24.878
PALD1	0	genome.wustl.edu	37	10	72285747	72285747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	72285747	72285747	G	A	SNP	PALD1	ENST00000263563	human	ensembl	74_37	+1	known	missense	c.40	p.A14T	0.089	NULL	smart_Tyr_Pase_cat	-	no_errors	PALD1	HGNC	ENSG00000107719				74	0	0	38	16	29.6296
PRF1	0	genome.wustl.edu	37	10	72358862	72358862	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	72358862	72358862	G	A	SNP	PRF1	ENST00000373209	human	ensembl	74_37	-1	known	silent	c.615	p.N205	0.000	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_C2_dom,superfamily_C2_dom,smart_MACPF,smart_C2_dom,pfscan_C2_dom	-	no_errors	PRF1	HGNC	ENSG00000180644				47	0	0	27	8	22.8571
KCNMA1	0	genome.wustl.edu	37	10	78872132	78872132	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	78872132	78872132	A	G	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.953	p.I318T	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				43	0	0	25	4	13.7931
POLR3A	0	genome.wustl.edu	37	10	79744971	79744971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	79744971	79744971	C	T	SNP	POLR3A	ENST00000372371	human	ensembl	74_37	-1	known	missense	c.3199	p.V1067M	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606				92	0	0	43	28	39.4366
EIF5AL1	0	genome.wustl.edu	37	10	81272647	81272647	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	81272647	81272647	T	C	SNP	EIF5AL1	ENST00000520547	human	ensembl	74_37	+1	known	missense	c.242	p.V81A	1.000	superfamily_Translation_prot_SH3-like,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	pfam_Transl_elong_IF5A_C,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	-	no_errors	EIF5AL1	HGNC	ENSG00000253626				67	0	0	31	8	20.5128
MAT1A	0	genome.wustl.edu	37	10	82036321	82036321	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	82036321	82036321	G	A	SNP	MAT1A	ENST00000372213	human	ensembl	74_37	-1	known	silent	c.579	p.G193	0.010	pfam_S-AdoMet_synt_central,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	-	no_errors	MAT1A	HGNC	ENSG00000151224				229	0	0	114	72	38.7097
NRG3	0	genome.wustl.edu	37	10	83635584	83635584	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	83635584	83635584	G	T	SNP	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	missense	c.488	p.R163L	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737				46	0	0	36	3	7.69231
CDHR1	0	genome.wustl.edu	37	10	85972965	85972965	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	85972965	85972965	C	T	SNP	CDHR1	ENST00000372117	human	ensembl	74_37	+1	known	missense	c.1901	p.S634F	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600				120	0	0	64	18	21.9512
PTEN	0	genome.wustl.edu	37	10	89653808	89653808	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	89653808	89653808	G	T	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	nonsense	c.106	p.G36*	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				95	0	0	43	12	21.8182
PTEN	0	genome.wustl.edu	37	10	89653842	89653842	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	89653842	89653842	G	T	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	missense	c.140	p.R47M	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				96	0	0	40	15	27.2727
HTR7	0	genome.wustl.edu	37	10	92509172	92509172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	92509172	92509172	G	A	SNP	HTR7	ENST00000336152	human	ensembl	74_37	-1	known	missense	c.719	p.T240M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT_7_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	HTR7	HGNC	ENSG00000148680				72	0	0	34	12	26.087
CYP26A1	0	genome.wustl.edu	37	10	94834181	94834181	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	94834181	94834181	C	T	SNP	CYP26A1	ENST00000224356	human	ensembl	74_37	+1	known	silent	c.306	p.L102	0.992	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP26A1	HGNC	ENSG00000095596				339	1	0.294118	190	91	32.3843
PDE6C	0	genome.wustl.edu	37	10	95381766	95381766	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	95381766	95381766	G	A	SNP	PDE6C	ENST00000371447	human	ensembl	74_37	+1	known	silent	c.801	p.T267	0.847	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464				72	0	0	47	20	29.8507
PIPSL	0	genome.wustl.edu	37	10	95721240	95721240	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	95721240	95721240	G	A	SNP	PIPSL	ENST00000480546	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.975	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764				132	0	0	53	24	31.1688
MORN4	0	genome.wustl.edu	37	10	99377012	99377012	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	99377012	99377012	A	G	SNP	MORN4	ENST00000335628	human	ensembl	74_37	-1	known	silent	c.309	p.N103	0.993	pfam_MORN,smart_MORN	pfam_MORN,smart_MORN	-	no_errors	MORN4	HGNC	ENSG00000171160				174	0	0	109	33	23.2394
MORN4	0	genome.wustl.edu	37	10	99379386	99379386	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	99379386	99379386	T	C	SNP	MORN4	ENST00000307450	human	ensembl	74_37	-1	known	missense	c.25	p.T9A	1.000	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN4	HGNC	ENSG00000171160				86	0	0	57	20	25.974
MMP20	0	genome.wustl.edu	37	11	102487787	102487787	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	102487787	102487787	A	G	SNP	MMP20	ENST00000260228	human	ensembl	74_37	-1	known	missense	c.130	p.Y44H	0.980	pirsf_Pept_M10A_Metazoans,pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP20	HGNC	ENSG00000137674				39	0	0	23	4	14.8148
MMP10	0	genome.wustl.edu	37	11	102650323	102650323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	102650323	102650323	G	A	SNP	MMP10	ENST00000279441	human	ensembl	74_37	-1	known	missense	c.259	p.R87C	0.607	pirsf_Pept_M10A_Metazoans,superfamily_Peptidoglycan-bd-like,prints_Pept_M10A	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP10	HGNC	ENSG00000166670				31	0	0	22	8	26.6667
CWF19L2	0	genome.wustl.edu	37	11	107299920	107299920	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	107299920	107299920	C	T	SNP	CWF19L2	ENST00000282251	human	ensembl	74_37	-1	known	silent	c.1038	p.T346	0.000	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404				57	0	0	24	7	22.5806
ATM	0	genome.wustl.edu	37	11	108115583	108115583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	108115583	108115583	C	T	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.731	p.A244V	0.997	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				81	0	0	36	6	14.2857
NCAM1	0	genome.wustl.edu	37	11	113105857	113105857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	113105857	113105857	C	T	SNP	NCAM1	ENST00000316851	human	ensembl	74_37	+1	known	missense	c.1766	p.A589V	0.016	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM1	HGNC	ENSG00000149294				26	0	0	12	4	25
USP28	0	genome.wustl.edu	37	11	113704197	113704197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	113704197	113704197	G	A	SNP	USP28	ENST00000003302	human	ensembl	74_37	-1	known	missense	c.704	p.P235L	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_UBA-like,pfscan_Peptidase_C19/C67	-	no_errors	USP28	HGNC	ENSG00000048028				95	0	0	58	18	23.6842
APOA5	0	genome.wustl.edu	37	11	116661360	116661360	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	116661360	116661360	G	A	SNP	APOA5	ENST00000227665	human	ensembl	74_37	-1	known	silent	c.585	p.A195	0.992	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243				48	0	0	20	4	16.6667
APOA4	0	genome.wustl.edu	37	11	116692251	116692251	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	116692251	116692251	G	T	SNP	APOA4	ENST00000357780	human	ensembl	74_37	-1	known	missense	c.523	p.L175M	0.165	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244				149	0	0	75	29	27.8846
SIK3	0	genome.wustl.edu	37	11	116730138	116730138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	116730138	116730138	G	A	SNP	SIK3	ENST00000375300	human	ensembl	74_37	-1	known	missense	c.2464	p.P822S	0.961	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SIK3	HGNC	ENSG00000160584				60	0	0	52	8	13.3333
CEP164	0	genome.wustl.edu	37	11	117253626	117253626	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	117253626	117253626	G	A	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	silent	c.1692	p.A564	0.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				41	0	0	24	7	22.5806
CEP164	0	genome.wustl.edu	37	11	117265117	117265117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	117265117	117265117	C	T	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	missense	c.2668	p.R890C	1.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				22	0	0	4	4	50
CEP164	0	genome.wustl.edu	37	11	117267320	117267320	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	117267320	117267320	T	G	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	missense	c.3271	p.L1091V	0.056	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				85	0	0	47	18	27.6923
DSCAML1	0	genome.wustl.edu	37	11	117376306	117376306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	117376306	117376306	C	T	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.2105	p.G702D	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				76	0	0	34	15	30.6122
USP2	0	genome.wustl.edu	37	11	119243494	119243494	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	119243494	119243494	G	A	SNP	USP2	ENST00000260187	human	ensembl	74_37	-1	known	missense	c.697	p.R233C	0.997	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP2	HGNC	ENSG00000036672				87	0	0	33	20	37.7358
GRIK4	0	genome.wustl.edu	37	11	120702624	120702624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	120702624	120702624	G	A	SNP	GRIK4	ENST00000527524	human	ensembl	74_37	+1	known	missense	c.575	p.R192H	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403				124	0	0	69	29	29.5918
UBASH3B	0	genome.wustl.edu	37	11	122659932	122659932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	122659932	122659932	C	T	SNP	UBASH3B	ENST00000284273	human	ensembl	74_37	+1	known	missense	c.896	p.T299M	0.995	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_SH3_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,smart_UBA/transl_elong_EF1B_N_euk,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3B	HGNC	ENSG00000154127				247	0	0	133	48	26.5193
OR10G4	0	genome.wustl.edu	37	11	123886626	123886626	+	Silent	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	123886626	123886626	A	C	SNP	OR10G4	ENST00000320891	human	ensembl	74_37	+1	known	silent	c.345	p.T115	0.063	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737				113	0	0	63	14	18.1818
TBRG1	0	genome.wustl.edu	37	11	124496847	124496847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	124496847	124496847	C	T	SNP	TBRG1	ENST00000529543	human	ensembl	74_37	+1	known	missense	c.269	p.P90L	0.688	NULL	NULL	-	no_errors	TBRG1	HGNC	ENSG00000154144				14	0	0	13	3	18.75
ROBO3	0	genome.wustl.edu	37	11	124738967	124738967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	124738967	124738967	G	A	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	missense	c.430	p.V144M	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134				16	0	0	5	6	54.5455
ROBO4	0	genome.wustl.edu	37	11	124757063	124757063	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	124757063	124757063	C	A	SNP	ROBO4	ENST00000306534	human	ensembl	74_37	-1	known	missense	c.2245	p.A749S	0.946	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO4	HGNC	ENSG00000154133				93	0	0	64	5	7.24638
CCDC15	0	genome.wustl.edu	37	11	124845023	124845023	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	124845023	124845023	G	A	SNP	CCDC15	ENST00000344762	human	ensembl	74_37	+1	known	missense	c.548	p.R183Q	0.244	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548				21	0	0	10	6	37.5
PKNOX2	0	genome.wustl.edu	37	11	125281699	125281699	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	125281699	125281699	C	T	SNP	PKNOX2	ENST00000298282	human	ensembl	74_37	+1	known	nonsense	c.874	p.R292*	1.000	pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PKNOX2	HGNC	ENSG00000165495				89	0	0	40	20	33.3333
SRPR	0	genome.wustl.edu	37	11	126135202	126135202	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	126135202	126135202	G	A	SNP	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	silent	c.1272	p.C424	1.000	pfam_SRP54_GTPase_dom,pfam_ArgK,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	-	no_errors	SRPR	HGNC	ENSG00000182934				68	0	0	29	17	36.9565
MUC5B	0	genome.wustl.edu	37	11	1264187	1264187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	1264187	1264187	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.6086	p.T2029M	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				232	1	0.429185	114	50	30.4878
MUC5B	0	genome.wustl.edu	37	11	1264682	1264682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	1264682	1264682	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.6581	p.P2194L	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				8	0	0	2	3	60
MUC5B	0	genome.wustl.edu	37	11	1271392	1271392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	1271392	1271392	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.13291	p.A4431T	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				311	0	0	128	51	28.4916
PRDM10	0	genome.wustl.edu	37	11	129802010	129802010	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	129802010	129802010	T	C	SNP	PRDM10	ENST00000358825	human	ensembl	74_37	-1	known	missense	c.1274	p.D425G	0.818	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325				120	0	0	69	16	18.8235
PRDM10	0	genome.wustl.edu	37	11	129802014	129802014	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	129802014	129802014	T	A	SNP	PRDM10	ENST00000358825	human	ensembl	74_37	-1	known	missense	c.1270	p.S424C	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325				121	0	0	66	17	20.4819
PRDM10	0	genome.wustl.edu	37	11	129802017	129802017	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	129802017	129802017	T	C	SNP	PRDM10	ENST00000358825	human	ensembl	74_37	-1	known	missense	c.1267	p.K423E	0.983	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325				119	0	0	65	16	19.7531
IGSF9B	0	genome.wustl.edu	37	11	133814114	133814114	+	Splice_Site	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	133814114	133814114	C	T	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	splice_site	c.409+1	e3+1	1.000	-	-	-	no_errors	IGSF9B	HGNC	ENSG00000080854				38	0	0	13	6	31.5789
NCAPD3	0	genome.wustl.edu	37	11	134063940	134063940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	134063940	134063940	C	T	SNP	NCAPD3	ENST00000534548	human	ensembl	74_37	-1	known	missense	c.1795	p.A599T	1.000	superfamily_ARM-type_fold,pirsf_NCAPD3	superfamily_ARM-type_fold,pirsf_NCAPD3	-	no_errors	NCAPD3	HGNC	ENSG00000151503				71	0	0	25	7	21.875
INSC	0	genome.wustl.edu	37	11	15247376	15247376	+	Splice_Site	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	15247376	15247376	T	C	SNP	INSC	ENST00000379554	human	ensembl	74_37	+1	known	splice_site	c.1311+2	e9+2	1.000	-	-	-	no_errors	INSC	HGNC	ENSG00000188487				21	0	0	8	9	52.9412
SAA2	0	genome.wustl.edu	37	11	18266953	18266953	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	18266953	18266953	G	A	SNP	SAA2	ENST00000256733	human	ensembl	74_37	-1	known	nonsense	c.340	p.R114*	0.075	pfam_Serum_amyloid_A,smart_Serum_amyloid_A,pirsf_Serum_amyloid_A	pfam_Serum_amyloid_A,smart_Serum_amyloid_A,pirsf_Serum_amyloid_A,prints_Serum_amyloid_A	-	no_errors	SAA2	HGNC	ENSG00000134339				99	0	0	35	18	33.9623
SPTY2D1	0	genome.wustl.edu	37	11	18636955	18636955	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	18636955	18636955	T	C	SNP	SPTY2D1	ENST00000336349	human	ensembl	74_37	-1	known	missense	c.866	p.K289R	1.000	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119				60	0	0	29	13	30.9524
MRGPRX1	0	genome.wustl.edu	37	11	18955405	18955405	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	18955405	18955405	A	G	SNP	MRGPRX1	ENST00000302797	human	ensembl	74_37	-1	known	silent	c.927	p.P309	0.855	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255				65	0	0	37	4	9.7561
CSRP3	0	genome.wustl.edu	37	11	19213981	19213981	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	19213981	19213981	G	A	SNP	CSRP3	ENST00000265968	human	ensembl	74_37	-1	known	silent	c.15	p.G5	0.189	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	CSRP3	HGNC	ENSG00000129170				46	0	0	34	11	24.4444
NAV2	0	genome.wustl.edu	37	11	19961240	19961240	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	19961240	19961240	C	T	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	silent	c.2136	p.A712	0.995	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				62	0	0	44	10	18.5185
IGF2	0	genome.wustl.edu	37	11	2154748	2154748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	2154748	2154748	G	A	SNP	IGF2	ENST00000434045	human	ensembl	74_37	-1	known	missense	c.473	p.P158L	1.000	NULL	pfam_IGF2_C,pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_IGF2,prints_Insulin_family,prints_Insulin-like_growth_factor	-	no_errors	IGF2	HGNC	ENSG00000167244				35	0	0	17	10	37.037
IMMP1L	0	genome.wustl.edu	37	11	31484842	31484842	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	31484842	31484842	C	T	SNP	IMMP1L	ENST00000527184	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.980	-	-	-	no_errors	IMMP1L	HGNC	ENSG00000148950				57	0	0	29	10	25.641
KIAA1549L	0	genome.wustl.edu	37	11	33565470	33565470	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	33565470	33565470	G	A	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	silent	c.1470	p.V490	0.000	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427				93	0	0	51	19	27.1429
ABTB2	0	genome.wustl.edu	37	11	34194817	34194817	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	34194817	34194817	G	A	SNP	ABTB2	ENST00000435224	human	ensembl	74_37	-1	known	missense	c.1282	p.R428C	1.000	NULL	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016				14	0	0	11	5	31.25
LDLRAD3	0	genome.wustl.edu	37	11	36250715	36250715	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	36250715	36250715	C	T	SNP	LDLRAD3	ENST00000315571	human	ensembl	74_37	+1	known	missense	c.806	p.A269V	0.385	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD3	HGNC	ENSG00000179241				334	0	0	181	61	25.2066
RAG1	0	genome.wustl.edu	37	11	36596057	36596057	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	36596057	36596057	G	A	SNP	RAG1	ENST00000299440	human	ensembl	74_37	+1	known	silent	c.1203	p.S401	0.011	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349				80	0	0	37	19	33.9286
NUP98	0	genome.wustl.edu	37	11	3720468	3720468	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	3720468	3720468	G	A	SNP	NUP98	ENST00000324932	human	ensembl	74_37	-1	known	nonsense	c.3853	p.R1285*	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713				171	0	0	86	38	30.6452
B4GALNT4	0	genome.wustl.edu	37	11	376350	376350	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	376350	376350	C	T	SNP	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	silent	c.1296	p.D432	0.531	NULL	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				52	0	0	21	11	34.375
GYLTL1B	0	genome.wustl.edu	37	11	45949753	45949753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	45949753	45949753	G	A	SNP	GYLTL1B	ENST00000325468	human	ensembl	74_37	+1	known	missense	c.1780	p.A594T	0.991	NULL	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905				129	0	0	42	23	35.3846
CHRM4	0	genome.wustl.edu	37	11	46406889	46406889	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	46406889	46406889	G	A	SNP	CHRM4	ENST00000433765	human	ensembl	74_37	-1	known	silent	c.1219	p.L407	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720				34	0	0	16	7	30.4348
NUP160	0	genome.wustl.edu	37	11	47814391	47814391	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	47814391	47814391	G	A	SNP	NUP160	ENST00000378460	human	ensembl	74_37	-1	known	nonsense	c.3397	p.R1133*	0.999	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066				152	0	0	91	41	31.0606
PTPRJ	0	genome.wustl.edu	37	11	48145173	48145173	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	48145173	48145173	C	A	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	missense	c.625	p.P209T	0.006	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				43	0	0	30	5	14.2857
OR4S1	0	genome.wustl.edu	37	11	48328602	48328602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	48328602	48328602	G	A	SNP	OR4S1	ENST00000319988	human	ensembl	74_37	+1	known	missense	c.828	p.M276I	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555				123	0	0	73	29	28.4314
OR4S2	0	genome.wustl.edu	37	11	55418833	55418833	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	55418833	55418833	T	C	SNP	OR4S2	ENST00000312422	human	ensembl	74_37	+1	known	silent	c.454	p.L152	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982				209	0	0	101	38	27.3381
OR8H3	0	genome.wustl.edu	37	11	55890450	55890450	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	55890450	55890450	T	A	SNP	OR8H3	ENST00000313472	human	ensembl	74_37	+1	known	missense	c.602	p.I201N	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H3	HGNC	ENSG00000181761				199	0	0	122	42	25.6098
OR5J2	0	genome.wustl.edu	37	11	55944198	55944198	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	55944198	55944198	C	T	SNP	OR5J2	ENST00000312298	human	ensembl	74_37	+1	known	silent	c.105	p.Y35	0.110	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957				164	0	0	99	33	25
TNKS1BP1	0	genome.wustl.edu	37	11	57080198	57080198	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	57080198	57080198	C	T	SNP	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	missense	c.1964	p.R655Q	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				40	0	0	21	3	12.5
OR10Q1	0	genome.wustl.edu	37	11	57995829	57995829	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	57995829	57995829	G	A	SNP	OR10Q1	ENST00000316770	human	ensembl	74_37	-1	known	silent	c.519	p.C173	0.051	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Q1	HGNC	ENSG00000180475				48	0	0	27	11	28.9474
ZFP91	0	genome.wustl.edu	37	11	58385066	58385066	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	58385066	58385066	A	T	SNP	ZFP91	ENST00000316059	human	ensembl	74_37	+1	known	missense	c.1600	p.I534F	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660				67	0	0	47	10	17.5439
OR52E6	0	genome.wustl.edu	37	11	5863113	5863113	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	5863113	5863113	G	A	SNP	OR52E6	ENST00000379946	human	ensembl	74_37	-1	known	silent	c.27	p.N9	0.002	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E6	HGNC	ENSG00000205409				43	0	0	23	18	43.9024
OR5A1	0	genome.wustl.edu	37	11	59211158	59211158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	59211158	59211158	G	A	SNP	OR5A1	ENST00000302030	human	ensembl	74_37	+1	known	missense	c.517	p.G173R	0.708	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5A1	HGNC	ENSG00000172320				308	0	0	203	55	21.3178
STX3	0	genome.wustl.edu	37	11	59560902	59560902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	59560902	59560902	G	A	SNP	STX3	ENST00000337979	human	ensembl	74_37	+1	known	missense	c.590	p.R197Q	0.997	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX3	HGNC	ENSG00000166900				56	0	0	45	12	21.0526
MS4A1	0	genome.wustl.edu	37	11	60230571	60230571	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	60230571	60230571	T	C	SNP	MS4A1	ENST00000345732	human	ensembl	74_37	+1	known	missense	c.256	p.Y86H	1.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A1	HGNC	ENSG00000156738				100	0	0	64	26	28.8889
MS4A10	0	genome.wustl.edu	37	11	60557821	60557821	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	60557821	60557821	G	T	SNP	MS4A10	ENST00000308287	human	ensembl	74_37	+1	known	missense	c.13	p.A5S	0.004	NULL	pfam_CD20-like	-	no_errors	MS4A10	HGNC	ENSG00000172689				108	0	0	43	22	33.8462
SLC15A3	0	genome.wustl.edu	37	11	60711286	60711286	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	60711286	60711286	G	A	SNP	SLC15A3	ENST00000227880	human	ensembl	74_37	-1	known	silent	c.871	p.L291	1.000	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC15A3	HGNC	ENSG00000110446				30	0	0	7	4	36.3636
DDB1	0	genome.wustl.edu	37	11	61079513	61079513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	61079513	61079513	C	T	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	missense	c.2113	p.D705N	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986				203	0	0	117	42	26.4151
MYRF	0	genome.wustl.edu	37	11	61539203	61539203	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	61539203	61539203	G	A	SNP	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	silent	c.972	p.P324	0.392	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				159	0	0	87	21	19.4444
MYRF	0	genome.wustl.edu	37	11	61541548	61541548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	61541548	61541548	G	A	SNP	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	missense	c.1225	p.G409S	1.000	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				47	0	0	12	10	45.4545
RAB3IL1	0	genome.wustl.edu	37	11	61672092	61672092	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	61672092	61672092	C	T	SNP	RAB3IL1	ENST00000394836	human	ensembl	74_37	-1	known	silent	c.825	p.T275	0.833	NULL	pfam_Sec2p	-	no_errors	RAB3IL1	HGNC	ENSG00000167994				48	0	0	24	10	29.4118
EML3	0	genome.wustl.edu	37	11	62376578	62376578	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	62376578	62376578	C	T	SNP	EML3	ENST00000529309	human	ensembl	74_37	-1	known	missense	c.785	p.R262H	1.000	pfam_HELP,superfamily_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML3	HGNC	ENSG00000149499				146	0	0	77	28	26.6667
TMEM179B	0	genome.wustl.edu	37	11	62557411	62557411	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	62557411	62557411	C	T	SNP	TMEM179B	ENST00000333449	human	ensembl	74_37	+1	known	silent	c.552	p.V184	0.001	NULL	NULL	-	no_errors	TMEM179B	HGNC	ENSG00000185475				210	0	0	103	40	27.972
NXF1	0	genome.wustl.edu	37	11	62569689	62569689	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	62569689	62569689	A	G	SNP	NXF1	ENST00000294172	human	ensembl	74_37	-1	known	missense	c.413	p.M138T	0.965	pfam_Tap_RNA-bd	pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF1	HGNC	ENSG00000162231				39	0	0	21	13	38.2353
OTUB1	0	genome.wustl.edu	37	11	63764868	63764868	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	63764868	63764868	G	A	SNP	OTUB1	ENST00000422031	human	ensembl	74_37	+1	known	silent	c.777	p.A259	0.701	pfam_Peptidase_C65_otubain,pfam_OTU,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	pfam_Peptidase_C65_otubain,pfam_OTU,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	-	no_errors	OTUB1	HGNC	ENSG00000167770				84	0	0	33	17	34
FERMT3	0	genome.wustl.edu	37	11	63978892	63978892	+	Silent	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	63978892	63978892	A	C	SNP	FERMT3	ENST00000279227	human	ensembl	74_37	+1	known	silent	c.660	p.S220	0.023	smart_Band_41_domain	pfam_FERM_central,pfam_Pleckstrin_homology,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT3	HGNC	ENSG00000149781				18	0	0	11	2	15.3846
RPS6KA4	0	genome.wustl.edu	37	11	64137189	64137189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	64137189	64137189	G	A	SNP	RPS6KA4	ENST00000334205	human	ensembl	74_37	+1	known	missense	c.1621	p.D541N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA4	HGNC	ENSG00000162302				53	0	0	25	5	16.6667
PYGM	0	genome.wustl.edu	37	11	64527250	64527250	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	64527250	64527250	C	T	SNP	PYGM	ENST00000164139	human	ensembl	74_37	-1	known	missense	c.121	p.V41I	1.000	pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976				334	0	0	166	76	31.405
ATG2A	0	genome.wustl.edu	37	11	64668525	64668525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	64668525	64668525	C	T	SNP	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	missense	c.4165	p.G1389S	0.997	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046				11	0	0	7	5	41.6667
ZFPL1	0	genome.wustl.edu	37	11	64854021	64854021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	64854021	64854021	G	A	SNP	ZFPL1	ENST00000294258	human	ensembl	74_37	+1	known	missense	c.349	p.A117T	0.001	NULL	NULL	-	no_errors	ZFPL1	HGNC	ENSG00000162300				137	0	0	71	27	27.551
MAP3K11	0	genome.wustl.edu	37	11	65367021	65367021	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	65367021	65367021	C	T	SNP	MAP3K11	ENST00000309100	human	ensembl	74_37	-1	known	missense	c.2050	p.A684T	0.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327				130	0	0	57	22	27.8481
CFL1	0	genome.wustl.edu	37	11	65623611	65623611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	65623611	65623611	C	T	SNP	CFL1	ENST00000308162	human	ensembl	74_37	-1	known	missense	c.106	p.V36M	0.999	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	-	no_errors	CFL1	HGNC	ENSG00000172757				100	0	0	48	13	21.3115
FIBP	0	genome.wustl.edu	37	11	65651890	65651890	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	65651890	65651890	G	A	SNP	FIBP	ENST00000338369	human	ensembl	74_37	-1	known	missense	c.998	p.A333V	0.586	pfam_FIBP	pfam_FIBP	-	no_errors	FIBP	HGNC	ENSG00000172500				56	0	0	22	9	29.0323
SART1	0	genome.wustl.edu	37	11	65732567	65732567	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	65732567	65732567	G	T	SNP	SART1	ENST00000530251	human	ensembl	74_37	+1	known	missense	c.473	p.R158L	0.982	NULL	pfam_SART_1	-	no_errors	SART1	HGNC	ENSG00000175467				53	0	0	27	10	27.027
CD248	0	genome.wustl.edu	37	11	66084234	66084234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	66084234	66084234	G	A	SNP	CD248	ENST00000311330	human	ensembl	74_37	-1	known	missense	c.265	p.R89W	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807				35	0	0	10	13	56.5217
DCHS1	0	genome.wustl.edu	37	11	6651700	6651700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	6651700	6651700	G	A	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.4325	p.A1442V	0.992	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				9	0	0	4	4	50
PPP1CA	0	genome.wustl.edu	37	11	67168671	67168671	+	Splice_Site	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	67168671	67168671	C	T	SNP	PPP1CA	ENST00000376745	human	ensembl	74_37	-1	known	splice_site	c.56-1	e2-1	1.000	-	-	-	no_errors	PPP1CA	HGNC	ENSG00000172531				156	0	0	66	19	22.3529
TBC1D10C	0	genome.wustl.edu	37	11	67177171	67177171	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	67177171	67177171	G	T	SNP	TBC1D10C	ENST00000312390	human	ensembl	74_37	+1	known	missense	c.1287	p.E429D	0.617	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463				33	0	0	18	3	14.2857
CABP4	0	genome.wustl.edu	37	11	67223133	67223133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	67223133	67223133	C	T	SNP	CABP4	ENST00000325656	human	ensembl	74_37	+1	known	missense	c.239	p.P80L	0.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP4	HGNC	ENSG00000175544				37	0	0	12	10	45.4545
SUV420H1	0	genome.wustl.edu	37	11	67926307	67926307	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	67926307	67926307	G	A	SNP	SUV420H1	ENST00000304363	human	ensembl	74_37	-1	known	silent	c.1506	p.A502	0.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066				70	0	0	17	13	43.3333
LRP5	0	genome.wustl.edu	37	11	68191056	68191056	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	68191056	68191056	G	A	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	missense	c.3127	p.E1043K	0.998	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337				186	0	0	76	52	40.625
CTTN	0	genome.wustl.edu	37	11	70277334	70277334	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	70277334	70277334	C	T	SNP	CTTN	ENST00000301843	human	ensembl	74_37	+1	known	missense	c.1214	p.S405L	0.951	superfamily_SH3_domain,prints_p67phox	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733				192	0	0	140	42	23.0769
CLPB	0	genome.wustl.edu	37	11	72004579	72004579	+	Silent	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	72004579	72004579	C	A	SNP	CLPB	ENST00000294053	human	ensembl	74_37	-1	known	silent	c.1956	p.T652	0.013	pfam_Clp_ATPase_C,superfamily_P-loop_NTPase	pfam_ATPase_AAA-2,pfam_Ankyrin_rpt,pfam_Clp_ATPase_C,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,pfam_Zeta_toxin_domain,pfam_Sigma_54_int,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_AAA+_ATPase,prints_ClpA/B,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CLPB	HGNC	ENSG00000162129				55	0	0	28	8	22.2222
P2RY6	0	genome.wustl.edu	37	11	73007984	73007984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	73007984	73007984	C	T	SNP	P2RY6	ENST00000349767	human	ensembl	74_37	+1	known	missense	c.421	p.R141C	0.680	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y3_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y6_rcpt,prints_GPCR_Rhodpsn,prints_P2Y3_rcpt,prints_Protea_act_rcpt	-	no_errors	P2RY6	HGNC	ENSG00000171631				57	0	0	29	10	25.641
DNAJB13	0	genome.wustl.edu	37	11	73662142	73662142	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	73662142	73662142	G	A	SNP	DNAJB13	ENST00000339764	human	ensembl	74_37	+1	known	missense	c.28	p.G10R	0.893	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB13	HGNC	ENSG00000187726				52	0	0	37	13	26
UVRAG	0	genome.wustl.edu	37	11	75562938	75562938	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	75562938	75562938	G	A	SNP	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	missense	c.128	p.R43Q	1.000	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382				92	0	0	63	29	31.5217
GDPD4	0	genome.wustl.edu	37	11	76944092	76944092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	76944092	76944092	A	G	SNP	GDPD4	ENST00000376217	human	ensembl	74_37	-1	known	missense	c.1367	p.L456P	0.022	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD4	HGNC	ENSG00000178795				48	0	0	33	14	29.7872
GAB2	0	genome.wustl.edu	37	11	77934561	77934561	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	77934561	77934561	T	C	SNP	GAB2	ENST00000361507	human	ensembl	74_37	-1	known	silent	c.1464	p.S488	0.420	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327				175	0	0	93	22	19.1304
PRCP	0	genome.wustl.edu	37	11	82561043	82561043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	82561043	82561043	C	T	SNP	PRCP	ENST00000393399	human	ensembl	74_37	-1	known	missense	c.727	p.V243I	1.000	pfam_Peptidase_S28	pfam_Peptidase_S28	-	no_errors	PRCP	HGNC	ENSG00000137509				39	0	0	23	11	32.3529
C11orf82	0	genome.wustl.edu	37	11	82644690	82644690	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	82644690	82644690	A	G	SNP	C11orf82	ENST00000430323	human	ensembl	74_37	+1	known	silent	c.2310	p.P770	0.858	NULL	pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold	-	no_errors	C11orf82	HGNC	ENSG00000165490				49	0	0	21	14	40
DLG2	0	genome.wustl.edu	37	11	83770433	83770433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	83770433	83770433	C	T	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	missense	c.844	p.V282I	0.999	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				70	0	0	43	13	23.2143
CCDC89	0	genome.wustl.edu	37	11	85396668	85396668	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	85396668	85396668	A	G	SNP	CCDC89	ENST00000316398	human	ensembl	74_37	-1	known	missense	c.506	p.L169P	0.032	NULL	NULL	-	no_errors	CCDC89	HGNC	ENSG00000179071				109	0	0	44	14	24.1379
GRM5	0	genome.wustl.edu	37	11	88583111	88583111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	88583111	88583111	G	A	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.874	p.R292C	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				79	0	0	46	7	13.2075
FAT3	0	genome.wustl.edu	37	11	92533683	92533683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	92533683	92533683	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.7504	p.V2502I	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				32	0	0	8	4	33.3333
MTNR1B	0	genome.wustl.edu	37	11	92703084	92703084	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	92703084	92703084	G	A	SNP	MTNR1B	ENST00000257068	human	ensembl	74_37	+1	known	missense	c.193	p.V65M	0.995	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Mel_1A_rcpt	-	no_errors	MTNR1B	HGNC	ENSG00000134640				32	0	0	15	7	31.8182
PANX1	0	genome.wustl.edu	37	11	93912987	93912987	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	93912987	93912987	C	T	SNP	PANX1	ENST00000227638	human	ensembl	74_37	+1	known	silent	c.765	p.N255	0.634	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX1	HGNC	ENSG00000110218				167	0	0	113	37	24.6667
ANKRD49	0	genome.wustl.edu	37	11	94231635	94231635	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	94231635	94231635	A	G	SNP	ANKRD49	ENST00000302755	human	ensembl	74_37	+1	known	silent	c.657	p.T219	0.080	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD49	HGNC	ENSG00000168876				116	0	0	85	21	19.8113
UTP20	0	genome.wustl.edu	37	12	101739426	101739426	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	101739426	101739426	A	G	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	missense	c.4700	p.Y1567C	0.531	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				103	0	0	46	13	22.0339
GNPTAB	0	genome.wustl.edu	37	12	102164318	102164318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	102164318	102164318	C	T	SNP	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	missense	c.979	p.E327K	1.000	pfam_DUF3184	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				47	0	0	23	14	37.8378
ASCL1	0	genome.wustl.edu	37	12	103352324	103352324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	103352324	103352324	G	A	SNP	ASCL1	ENST00000266744	human	ensembl	74_37	+1	known	missense	c.302	p.R101H	1.000	pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ASCL1	HGNC	ENSG00000139352				13	0	0	5	3	37.5
C12orf42	0	genome.wustl.edu	37	12	103696040	103696040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	103696040	103696040	G	A	SNP	C12orf42	ENST00000378113	human	ensembl	74_37	-1	known	missense	c.929	p.A310V	0.864	NULL	NULL	-	no_errors	C12orf42	HGNC	ENSG00000179088				52	0	0	25	8	24.2424
STAB2	0	genome.wustl.edu	37	12	104078853	104078853	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	104078853	104078853	C	T	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	silent	c.2988	p.N996	0.458	superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				129	0	0	60	23	27.7108
RIC8B	0	genome.wustl.edu	37	12	107208552	107208552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	107208552	107208552	C	T	SNP	RIC8B	ENST00000392837	human	ensembl	74_37	+1	known	missense	c.211	p.R71C	1.000	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8B	HGNC	ENSG00000111785				74	0	0	41	14	25.4545
DAO	0	genome.wustl.edu	37	12	109278931	109278931	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	109278931	109278931	G	A	SNP	DAO	ENST00000228476	human	ensembl	74_37	+1	known	missense	c.149	p.G50D	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	DAO	HGNC	ENSG00000110887				181	0	0	79	42	34.7107
ANAPC7	0	genome.wustl.edu	37	12	110811943	110811943	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	110811943	110811943	G	A	SNP	ANAPC7	ENST00000481473	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ANAPC7	HGNC	ENSG00000196510				110	0	0	48	25	34.2466
MYL2	0	genome.wustl.edu	37	12	111356964	111356964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	111356964	111356964	C	T	SNP	MYL2	ENST00000228841	human	ensembl	74_37	-1	known	missense	c.37	p.A13T	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL2	HGNC	ENSG00000111245				46	0	0	25	17	40.4762
CUX2	0	genome.wustl.edu	37	12	111785560	111785560	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	111785560	111785560	A	G	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	missense	c.3892	p.I1298V	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				44	0	0	25	10	28.5714
FAM109A	0	genome.wustl.edu	37	12	111800988	111800988	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	111800988	111800988	G	A	SNP	FAM109A	ENST00000361483	human	ensembl	74_37	-1	known	missense	c.283	p.R95C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FAM109A	HGNC	ENSG00000198324				39	0	0	21	7	25
TAS2R31	0	genome.wustl.edu	37	12	11183704	11183704	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	11183704	11183704	A	G	SNP	TAS2R31	ENST00000390675	human	ensembl	74_37	-1	known	silent	c.231	p.S77	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R31	HGNC	ENSG00000256436				129	0	0	102	8	7.27273
NAA25	0	genome.wustl.edu	37	12	112485518	112485518	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	112485518	112485518	G	A	SNP	NAA25	ENST00000261745	human	ensembl	74_37	-1	known	nonsense	c.1957	p.R653*	1.000	pfam_N-acetylTrfase_B_cplx_non-cat	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300				257	0	0	117	51	30.3571
DTX1	0	genome.wustl.edu	37	12	113515382	113515382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	113515382	113515382	C	T	SNP	DTX1	ENST00000257600	human	ensembl	74_37	+1	known	missense	c.413	p.P138L	1.000	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144				49	0	0	32	8	20
PRB4	0	genome.wustl.edu	37	12	11461556	11461556	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	11461556	11461556	C	A	SNP	PRB4	ENST00000279575	human	ensembl	74_37	-1	known	nonsense	c.361	p.E121*	0.000	NULL	NULL	-	no_errors	PRB4	HGNC	ENSG00000230657				342	1	0.291545	197	45	18.595
PRB4	0	genome.wustl.edu	37	12	11461619	11461619	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	11461619	11461619	C	A	SNP	PRB4	ENST00000279575	human	ensembl	74_37	-1	known	nonsense	c.298	p.E100*	0.001	NULL	NULL	-	no_errors	PRB4	HGNC	ENSG00000230657				600	0	0	345	48	12.2137
KSR2	0	genome.wustl.edu	37	12	118199032	118199032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	118199032	118199032	G	A	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	missense	c.770	p.A257V	0.402	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435				192	1	0.518135	69	42	37.8378
CIT	0	genome.wustl.edu	37	12	120172994	120172994	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	120172994	120172994	G	A	SNP	CIT	ENST00000261833	human	ensembl	74_37	-1	known	nonsense	c.3001	p.R1001*	0.994	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CIT	HGNC	ENSG00000122966				117	0	0	68	41	37.6147
GCN1L1	0	genome.wustl.edu	37	12	120621397	120621397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	120621397	120621397	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	missense	c.401	p.R134Q	1.000	NULL	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				121	0	0	58	23	28.3951
CLIP1	0	genome.wustl.edu	37	12	122825691	122825691	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	122825691	122825691	G	A	SNP	CLIP1	ENST00000540338	human	ensembl	74_37	-1	known	missense	c.2060	p.A687V	0.835	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779				157	0	0	79	33	29.4643
HIP1R	0	genome.wustl.edu	37	12	123343608	123343608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	123343608	123343608	G	A	SNP	HIP1R	ENST00000253083	human	ensembl	74_37	+1	known	missense	c.2159	p.R720H	1.000	NULL	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1R	HGNC	ENSG00000130787				14	0	0	9	6	40
LRP6	0	genome.wustl.edu	37	12	12339973	12339973	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	12339973	12339973	C	T	SNP	LRP6	ENST00000261349	human	ensembl	74_37	-1	known	missense	c.728	p.S243N	0.984	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018				88	0	0	78	25	24.2718
PITPNM2	0	genome.wustl.edu	37	12	123485614	123485614	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	123485614	123485614	C	T	SNP	PITPNM2	ENST00000320201	human	ensembl	74_37	-1	known	silent	c.1140	p.P380	0.023	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM2	HGNC	ENSG00000090975				66	0	0	30	11	26.8293
ATP6V0A2	0	genome.wustl.edu	37	12	124229435	124229435	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	124229435	124229435	C	A	SNP	ATP6V0A2	ENST00000330342	human	ensembl	74_37	+1	known	missense	c.1521	p.S507R	0.000	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A2	HGNC	ENSG00000185344				76	0	0	39	7	15.2174
ATP6V0A2	0	genome.wustl.edu	37	12	124235765	124235765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	124235765	124235765	G	A	SNP	ATP6V0A2	ENST00000330342	human	ensembl	74_37	+1	known	missense	c.2044	p.G682R	0.593	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A2	HGNC	ENSG00000185344				108	0	0	79	26	24.7619
DNAH10	0	genome.wustl.edu	37	12	124411254	124411254	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	124411254	124411254	T	C	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.11638	p.F3880L	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				47	0	0	34	9	20.9302
NCOR2	0	genome.wustl.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	124887093	124887093	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	silent	c.1497	p.Q499	0.999	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				12	0	0	2	6	75
SCARB1	0	genome.wustl.edu	37	12	125298818	125298818	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	125298818	125298818	A	G	SNP	SCARB1	ENST00000415380	human	ensembl	74_37	-1	known	missense	c.560	p.L187P	0.230	pfam_CD36	pfam_CD36,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB1	HGNC	ENSG00000073060				101	0	0	67	6	8.21918
FZD10	0	genome.wustl.edu	37	12	130648820	130648820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	130648820	130648820	G	A	SNP	FZD10	ENST00000229030	human	ensembl	74_37	+1	known	missense	c.1333	p.G445R	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD10	HGNC	ENSG00000111432				67	0	0	29	10	25.641
GPR133	0	genome.wustl.edu	37	12	131488738	131488738	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	131488738	131488738	C	T	SNP	GPR133	ENST00000261654	human	ensembl	74_37	+1	known	silent	c.1152	p.S384	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452				45	0	0	24	7	22.5806
EP400	0	genome.wustl.edu	37	12	132539679	132539679	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	132539679	132539679	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.7918	p.A2640T	0.994	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				18	0	0	3	3	50
EP400	0	genome.wustl.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	132547087	132547087	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8283	p.Q2761	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				54	0	0	22	3	12
GRIN2B	0	genome.wustl.edu	37	12	13716215	13716215	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	13716215	13716215	C	T	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	silent	c.3957	p.P1319	0.415	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				92	0	0	58	5	7.93651
GRIN2B	0	genome.wustl.edu	37	12	13716527	13716527	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	13716527	13716527	G	A	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	silent	c.3645	p.C1215	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				108	0	0	61	32	34.4086
PLBD1	0	genome.wustl.edu	37	12	14664194	14664194	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	14664194	14664194	C	A	SNP	PLBD1	ENST00000240617	human	ensembl	74_37	-1	known	nonsense	c.1186	p.G396*	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD1	HGNC	ENSG00000121316				81	0	0	61	19	23.75
PIK3C2G	0	genome.wustl.edu	37	12	18435062	18435062	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	18435062	18435062	A	G	SNP	PIK3C2G	ENST00000538779	human	ensembl	74_37	+1	known	missense	c.47	p.E16G	0.116	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144				15	0	0	3	6	66.6667
PDE3A	0	genome.wustl.edu	37	12	20766472	20766472	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	20766472	20766472	C	T	SNP	PDE3A	ENST00000359062	human	ensembl	74_37	+1	known	silent	c.1107	p.N369	0.651	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572				111	0	0	51	16	23.8806
IQSEC3	0	genome.wustl.edu	37	12	247675	247675	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	247675	247675	G	T	SNP	IQSEC3	ENST00000326261	human	ensembl	74_37	+1	known	silent	c.1146	p.V382	0.997	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC3	HGNC	ENSG00000120645				13	0	0	5	7	58.3333
IQSEC3	0	genome.wustl.edu	37	12	248329	248329	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	248329	248329	C	T	SNP	IQSEC3	ENST00000326261	human	ensembl	74_37	+1	known	silent	c.1800	p.S600	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC3	HGNC	ENSG00000120645				20	0	0	4	3	42.8571
CACNA1C	0	genome.wustl.edu	37	12	2800302	2800302	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	2800302	2800302	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	silent	c.6567	p.R2189	0.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				40	0	0	22	9	29.0323
NRIP2	0	genome.wustl.edu	37	12	2939904	2939904	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	2939904	2939904	T	C	SNP	NRIP2	ENST00000337508	human	ensembl	74_37	-1	known	silent	c.465	p.T155	0.000	superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	-	no_errors	NRIP2	HGNC	ENSG00000053702				60	0	0	31	15	32.6087
OVCH1	0	genome.wustl.edu	37	12	29592284	29592284	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	29592284	29592284	T	C	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	missense	c.3241	p.M1081V	0.002	NULL	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				10	0	0	5	4	44.4444
DDX11	0	genome.wustl.edu	37	12	31250882	31250882	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	31250882	31250882	T	C	SNP	DDX11	ENST00000407793	human	ensembl	74_37	+1	known	missense	c.1826	p.V609A	1.000	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573				133	0	0	64	28	30.4348
SLC6A13	0	genome.wustl.edu	37	12	368996	368996	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	368996	368996	G	T	SNP	SLC6A13	ENST00000436453	human	ensembl	74_37	-1	putative	missense	c.223	p.P75T	0.021	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	-	no_errors	SLC6A13	HGNC	ENSG00000010379				79	0	0	65	6	8.4507
CPNE8	0	genome.wustl.edu	37	12	39087578	39087578	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	39087578	39087578	T	C	SNP	CPNE8	ENST00000331366	human	ensembl	74_37	-1	known	missense	c.1024	p.M342V	0.992	pfam_Copine,smart_VWF_A,pfscan_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117				78	0	0	30	22	42.3077
KIF21A	0	genome.wustl.edu	37	12	39695397	39695397	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	39695397	39695397	C	A	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	missense	c.4819	p.G1607C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				269	0	0	210	26	11.0169
PUS7L	0	genome.wustl.edu	37	12	44130313	44130313	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	44130313	44130313	G	A	SNP	PUS7L	ENST00000344862	human	ensembl	74_37	-1	known	silent	c.1596	p.H532	0.994	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7L	HGNC	ENSG00000129317				89	0	0	55	25	31.25
SCAF11	0	genome.wustl.edu	37	12	46327972	46327972	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	46327972	46327972	A	G	SNP	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	missense	c.619	p.Y207H	0.123	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218				24	0	0	12	5	29.4118
PCED1B	0	genome.wustl.edu	37	12	47629390	47629390	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	47629390	47629390	C	T	SNP	PCED1B	ENST00000432328	human	ensembl	74_37	+1	known	missense	c.544	p.R182W	0.002	NULL	NULL	-	no_errors	PCED1B	HGNC	ENSG00000179715				42	0	0	23	7	23.3333
KCNA6	0	genome.wustl.edu	37	12	4919519	4919519	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	4919519	4919519	C	T	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	silent	c.312	p.G104	0.999	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				141	0	0	59	30	33.7079
CCDC65	0	genome.wustl.edu	37	12	49298120	49298120	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	49298120	49298120	A	G	SNP	CCDC65	ENST00000266984	human	ensembl	74_37	+1	known	missense	c.1	p.M1V	0.821	NULL	NULL	-	no_errors	CCDC65	HGNC	ENSG00000139537				200	0	0	91	20	18.018
NCKAP5L	0	genome.wustl.edu	37	12	50188791	50188791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	50188791	50188791	C	T	SNP	NCKAP5L	ENST00000335999	human	ensembl	74_37	-1	known	missense	c.2852	p.R951Q	1.000	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566				12	0	0	4	6	60
AQP2	0	genome.wustl.edu	37	12	50344854	50344854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	50344854	50344854	G	A	SNP	AQP2	ENST00000199280	human	ensembl	74_37	+1	known	missense	c.241	p.V81I	0.747	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	-	no_errors	AQP2	HGNC	ENSG00000167580				35	0	0	21	13	38.2353
CSRNP2	0	genome.wustl.edu	37	12	51457853	51457853	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	51457853	51457853	C	T	SNP	CSRNP2	ENST00000228515	human	ensembl	74_37	-1	known	silent	c.1308	p.T436	0.004	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP2	HGNC	ENSG00000110925				42	0	0	15	6	28.5714
DAZAP2	0	genome.wustl.edu	37	12	51634661	51634661	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	51634661	51634661	C	T	SNP	DAZAP2	ENST00000549555	human	ensembl	74_37	+1	known	missense	c.139	p.R47C	1.000	pfam_DAZ_assoc-2	pfam_DAZ_assoc-2	-	no_errors	DAZAP2	HGNC	ENSG00000183283				111	0	0	51	26	33.7662
BIN2	0	genome.wustl.edu	37	12	51685740	51685740	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	51685740	51685740	C	T	SNP	BIN2	ENST00000267012	human	ensembl	74_37	-1	known	missense	c.1150	p.A384T	0.000	NULL	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	-	no_errors	BIN2	HGNC	ENSG00000110934				71	0	0	34	7	17.0732
ANKRD33	0	genome.wustl.edu	37	12	52284398	52284398	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	52284398	52284398	G	A	SNP	ANKRD33	ENST00000340970	human	ensembl	74_37	+1	known	missense	c.293	p.R98Q	0.214	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD33	HGNC	ENSG00000167612				46	0	0	15	8	34.7826
C12orf44	0	genome.wustl.edu	37	12	52467515	52467515	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	52467515	52467515	G	A	SNP	C12orf44	ENST00000336854	human	ensembl	74_37	+1	known	silent	c.81	p.T27	0.868	pfam_ATG101	pfam_ATG101	-	no_errors	C12orf44	HGNC	ENSG00000123395				77	0	0	31	3	8.82353
KRT3	0	genome.wustl.edu	37	12	53189822	53189822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	53189822	53189822	C	T	SNP	KRT3	ENST00000309505	human	ensembl	74_37	-1	known	missense	c.5	p.S2N	0.464	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT3	HGNC	ENSG00000186442				38	0	0	14	3	17.6471
EIF4B	0	genome.wustl.edu	37	12	53412624	53412624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	53412624	53412624	C	T	SNP	EIF4B	ENST00000262056	human	ensembl	74_37	+1	known	missense	c.194	p.A65V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	EIF4B	HGNC	ENSG00000063046				138	0	0	85	21	19.8113
SP1	0	genome.wustl.edu	37	12	53776653	53776653	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	53776653	53776653	G	A	SNP	SP1	ENST00000327443	human	ensembl	74_37	+1	known	missense	c.922	p.A308T	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591				120	0	0	96	10	9.43396
MAP3K12	0	genome.wustl.edu	37	12	53880257	53880257	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	53880257	53880257	G	A	SNP	MAP3K12	ENST00000267079	human	ensembl	74_37	-1	known	nonsense	c.496	p.R166*	1.000	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625				78	0	0	43	17	28.3333
PDE1B	0	genome.wustl.edu	37	12	54966477	54966477	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	54966477	54966477	C	T	SNP	PDE1B	ENST00000243052	human	ensembl	74_37	+1	known	silent	c.687	p.A229	0.235	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1B	HGNC	ENSG00000123360				377	0	0	225	88	28.115
TESPA1	0	genome.wustl.edu	37	12	55360195	55360195	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	55360195	55360195	G	A	SNP	TESPA1	ENST00000316577	human	ensembl	74_37	-1	known	silent	c.324	p.A108	0.235	NULL	NULL	-	no_errors	TESPA1	HGNC	ENSG00000135426				106	0	0	56	21	27.2727
OR6C1	0	genome.wustl.edu	37	12	55714989	55714989	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	55714989	55714989	G	A	SNP	OR6C1	ENST00000379668	human	ensembl	74_37	+1	known	silent	c.606	p.A202	0.293	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C1	HGNC	ENSG00000205330				45	0	0	22	7	24.1379
ITGA7	0	genome.wustl.edu	37	12	56091513	56091513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	56091513	56091513	C	T	SNP	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	missense	c.1507	p.V503M	1.000	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424				71	0	0	33	13	28.2609
DNAJC14	0	genome.wustl.edu	37	12	56215796	56215796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	56215796	56215796	G	A	SNP	DNAJC14	ENST00000317269	human	ensembl	74_37	-1	known	missense	c.2074	p.R692W	0.999	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC14	HGNC	ENSG00000135392				149	0	0	76	42	35.5932
MYL6	0	genome.wustl.edu	37	12	56552245	56552245	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	56552245	56552245	G	T	SNP	MYL6	ENST00000536128	human	ensembl	74_37	+1	putative	silent	c.60	p.T20	0.428	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL6	HGNC	ENSG00000092841				39	0	0	20	6	23.0769
APOF	0	genome.wustl.edu	37	12	56755798	56755798	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	56755798	56755798	G	T	SNP	APOF	ENST00000398189	human	ensembl	74_37	-1	known	silent	c.192	p.S64	0.184	NULL	NULL	-	no_errors	APOF	HGNC	ENSG00000175336				151	0	0	99	7	6.60377
LRP1	0	genome.wustl.edu	37	12	57567081	57567081	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	57567081	57567081	G	T	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.3294	p.E1098D	0.999	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				65	0	0	51	4	7.27273
KIF5A	0	genome.wustl.edu	37	12	57962772	57962772	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	57962772	57962772	C	T	SNP	KIF5A	ENST00000455537	human	ensembl	74_37	+1	known	silent	c.741	p.A247	0.263	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5A	HGNC	ENSG00000155980				65	0	0	52	12	18.75
ARHGEF25	0	genome.wustl.edu	37	12	58008142	58008142	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	58008142	58008142	C	T	SNP	ARHGEF25	ENST00000333972	human	ensembl	74_37	+1	known	silent	c.802	p.L268	0.774	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF25	HGNC	ENSG00000240771				119	0	0	61	20	24.6914
AVIL	0	genome.wustl.edu	37	12	58201166	58201166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	58201166	58201166	G	A	SNP	AVIL	ENST00000257861	human	ensembl	74_37	-1	known	missense	c.1439	p.T480M	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	AVIL	HGNC	ENSG00000135407				127	1	0.78125	75	36	32.4324
SLC16A7	0	genome.wustl.edu	37	12	60168466	60168466	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	60168466	60168466	C	T	SNP	SLC16A7	ENST00000261187	human	ensembl	74_37	+1	known	silent	c.390	p.P130	0.007	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A7	HGNC	ENSG00000118596				47	0	0	22	9	29.0323
VWF	0	genome.wustl.edu	37	12	6128559	6128559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	6128559	6128559	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.4025	p.R1342H	0.949	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				74	0	0	27	21	43.75
LDHAL6CP	0	genome.wustl.edu	37	12	63397515	63397515	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	63397515	63397515	C	T	SNP	LDHAL6CP	ENST00000550738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.111	-	-	-	no_errors	LDHAL6CP	HGNC	ENSG00000250517				31	0	0	24	7	22.5806
LEMD3	0	genome.wustl.edu	37	12	65564319	65564319	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	65564319	65564319	G	T	SNP	LEMD3	ENST00000308330	human	ensembl	74_37	+1	known	nonsense	c.943	p.G315*	0.818	NULL	pfam_Inner-Nucl-membr_MAN1,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	-	no_errors	LEMD3	HGNC	ENSG00000174106				31	0	0	20	3	13.0435
IRAK3	0	genome.wustl.edu	37	12	66638373	66638373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	66638373	66638373	G	A	SNP	IRAK3	ENST00000261233	human	ensembl	74_37	+1	known	missense	c.995	p.S332N	0.591	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Death_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376				133	0	0	66	27	29.0323
HELB	0	genome.wustl.edu	37	12	66704320	66704320	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	66704320	66704320	G	T	SNP	HELB	ENST00000247815	human	ensembl	74_37	+1	known	missense	c.1612	p.A538S	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	HELB	HGNC	ENSG00000127311				166	0	0	85	37	30.3279
DYRK2	0	genome.wustl.edu	37	12	68051937	68051937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	68051937	68051937	C	T	SNP	DYRK2	ENST00000344096	human	ensembl	74_37	+1	known	missense	c.1250	p.T417M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK2	HGNC	ENSG00000127334				28	0	0	17	5	22.7273
CDCA3	0	genome.wustl.edu	37	12	6958314	6958314	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	6958314	6958314	C	A	SNP	CDCA3	ENST00000538862	human	ensembl	74_37	-1	known	nonsense	c.700	p.G234*	0.999	NULL	NULL	-	no_errors	CDCA3	HGNC	ENSG00000111665				46	0	0	21	4	16
TPH2	0	genome.wustl.edu	37	12	72372756	72372756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	72372756	72372756	C	T	SNP	TPH2	ENST00000333850	human	ensembl	74_37	+1	known	missense	c.830	p.P277L	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287				130	0	0	59	22	27.1605
CLSTN3	0	genome.wustl.edu	37	12	7287981	7287981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	7287981	7287981	C	T	SNP	CLSTN3	ENST00000266546	human	ensembl	74_37	+1	known	missense	c.442	p.R148W	1.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182				93	0	0	67	18	21.1765
ACSS3	0	genome.wustl.edu	37	12	81503375	81503375	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	81503375	81503375	C	T	SNP	ACSS3	ENST00000548058	human	ensembl	74_37	+1	known	silent	c.348	p.A116	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS3	HGNC	ENSG00000111058				60	0	0	21	10	32.2581
METTL25	0	genome.wustl.edu	37	12	82752576	82752576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	82752576	82752576	C	T	SNP	METTL25	ENST00000248306	human	ensembl	74_37	+1	known	missense	c.232	p.P78S	0.991	NULL	NULL	-	no_errors	METTL25	HGNC	ENSG00000127720				40	0	0	13	9	40.9091
ENSG00000221104	0	genome.wustl.edu	37	12	8519352	8519352	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	8519352	8519352	G	A	SNP	ENSG00000221104	ENST00000408177	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.344	-	-	-	no_errors	AC092865.1	Clone_based_ensembl_gene	ENSG00000221104				53	0	0	17	13	43.3333
LRRIQ1	0	genome.wustl.edu	37	12	85450750	85450750	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	85450750	85450750	T	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	missense	c.2179	p.C727S	0.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				324	0	0	196	49	20
ALX1	0	genome.wustl.edu	37	12	85695137	85695137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	85695137	85695137	G	A	SNP	ALX1	ENST00000316824	human	ensembl	74_37	+1	known	missense	c.865	p.A289T	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX1	HGNC	ENSG00000180318				86	0	0	54	18	25
A2M	0	genome.wustl.edu	37	12	9251308	9251308	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	9251308	9251308	G	A	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	silent	c.1746	p.H582	0.000	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				34	0	0	18	5	21.7391
LTA4H	0	genome.wustl.edu	37	12	96412600	96412600	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	96412600	96412600	A	T	SNP	LTA4H	ENST00000228740	human	ensembl	74_37	-1	known	missense	c.793	p.S265T	0.999	pfam_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase	-	no_errors	LTA4H	HGNC	ENSG00000111144				41	0	0	39	7	15.2174
NALCN	0	genome.wustl.edu	37	13	102029117	102029117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	102029117	102029117	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.578	p.G193E	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				143	0	0	66	29	30.5263
NALCN	0	genome.wustl.edu	37	13	102047697	102047697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	102047697	102047697	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.128	p.R43H	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				72	0	0	41	13	24.0741
ERCC5	0	genome.wustl.edu	37	13	103528225	103528225	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	103528225	103528225	G	A	SNP	ERCC5	ENST00000355739	human	ensembl	74_37	+1	known	missense	c.3533	p.R1178H	0.000	NULL	pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2_eukaryotes,prints_XPG/Rad2,tigrfam_XPG/Rad2_eukaryotes	-	no_errors	ERCC5	HGNC	ENSG00000134899				41	0	0	14	5	26.3158
COL4A1	0	genome.wustl.edu	37	13	110839513	110839513	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	110839513	110839513	G	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.1700	p.P567L	0.982	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				202	0	0	95	34	26.3566
CARKD	0	genome.wustl.edu	37	13	111289536	111289536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	111289536	111289536	C	T	SNP	CARKD	ENST00000309957	human	ensembl	74_37	+1	known	missense	c.833	p.S278L	1.000	pfam_YjeF_C_carb_kinase-rel,tigrfam_YjeF_C_carb_kinase-rel	pfam_YjeF_C_carb_kinase-rel,tigrfam_YjeF_C_carb_kinase-rel	-	no_errors	CARKD	HGNC	ENSG00000213995				47	0	0	10	7	41.1765
F10	0	genome.wustl.edu	37	13	113793763	113793763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	113793763	113793763	G	A	SNP	F10	ENST00000375559	human	ensembl	74_37	+1	known	missense	c.349	p.E117K	0.074	pirsf_Pept_S1A_FX,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F10	HGNC	ENSG00000126218				62	0	0	21	10	32.2581
LAMP1	0	genome.wustl.edu	37	13	113973833	113973833	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	113973833	113973833	G	A	SNP	LAMP1	ENST00000332556	human	ensembl	74_37	+1	known	silent	c.612	p.A204	0.000	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP1	HGNC	ENSG00000185896				85	0	0	33	9	21.4286
ZMYM5	0	genome.wustl.edu	37	13	20426142	20426142	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	20426142	20426142	A	T	SNP	ZMYM5	ENST00000337963	human	ensembl	74_37	-1	known	missense	c.179	p.V60D	1.000	NULL	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM5	HGNC	ENSG00000132950				57	0	0	18	4	18.1818
ZMYM2	0	genome.wustl.edu	37	13	20608488	20608488	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	20608488	20608488	A	C	SNP	ZMYM2	ENST00000382869	human	ensembl	74_37	+1	known	missense	c.2063	p.K688T	1.000	smart_TRASH_dom	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM2	HGNC	ENSG00000121741				96	0	0	52	16	23.5294
LATS2	0	genome.wustl.edu	37	13	21557370	21557370	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	21557370	21557370	G	A	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	silent	c.2475	p.Y825	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				71	0	0	42	15	26.3158
LATS2	0	genome.wustl.edu	37	13	21557772	21557772	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	21557772	21557772	G	A	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	silent	c.2073	p.H691	0.079	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				108	0	0	51	16	23.8806
FGF9	0	genome.wustl.edu	37	13	22275388	22275388	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	22275388	22275388	G	A	SNP	FGF9	ENST00000382353	human	ensembl	74_37	+1	known	silent	c.441	p.T147	0.686	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF9	HGNC	ENSG00000102678				54	0	0	20	13	39.3939
RNF17	0	genome.wustl.edu	37	13	25424504	25424504	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	25424504	25424504	A	G	SNP	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	missense	c.3127	p.T1043A	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972				38	0	0	31	3	8.82353
GPR12	0	genome.wustl.edu	37	13	27333685	27333685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	27333685	27333685	C	T	SNP	GPR12	ENST00000381436	human	ensembl	74_37	-1	known	missense	c.280	p.G94S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR_3/6/12_orphan,prints_GPR12,prints_GPCR_Rhodpsn	-	no_errors	GPR12	HGNC	ENSG00000132975				134	0	0	55	19	25.6757
GSX1	0	genome.wustl.edu	37	13	28367781	28367781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	28367781	28367781	G	A	SNP	GSX1	ENST00000302945	human	ensembl	74_37	+1	known	missense	c.491	p.R164H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GSX1	HGNC	ENSG00000169840				104	0	0	41	22	34.9206
B3GALTL	0	genome.wustl.edu	37	13	31897940	31897940	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	31897940	31897940	T	C	SNP	B3GALTL	ENST00000343307	human	ensembl	74_37	+1	known	missense	c.1237	p.C413R	0.999	pfam_Fringe-like	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676				296	0	0	164	79	32.5103
DCLK1	0	genome.wustl.edu	37	13	36699914	36699914	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	36699914	36699914	C	A	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.361	p.D121Y	1.000	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				56	0	0	39	6	13.3333
KBTBD7	0	genome.wustl.edu	37	13	41767959	41767959	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	41767959	41767959	G	A	SNP	KBTBD7	ENST00000379483	human	ensembl	74_37	-1	known	silent	c.435	p.Y145	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD7	HGNC	ENSG00000120696				76	0	0	38	10	20.8333
DGKH	0	genome.wustl.edu	37	13	42784857	42784857	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	42784857	42784857	G	A	SNP	DGKH	ENST00000337343	human	ensembl	74_37	+1	known	silent	c.2970	p.S990	0.001	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780				80	0	0	40	16	28.5714
AKAP11	0	genome.wustl.edu	37	13	42874000	42874000	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	42874000	42874000	T	C	SNP	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	missense	c.1118	p.L373P	0.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				54	0	0	28	11	28.2051
SIAH3	0	genome.wustl.edu	37	13	46425658	46425658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	46425658	46425658	C	T	SNP	SIAH3	ENST00000400405	human	ensembl	74_37	-1	known	missense	c.107	p.C36Y	1.000	NULL	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	-	no_errors	SIAH3	HGNC	ENSG00000215475				126	0	0	82	7	7.86517
MLNR	0	genome.wustl.edu	37	13	49795007	49795007	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	49795007	49795007	C	T	SNP	MLNR	ENST00000218721	human	ensembl	74_37	+1	known	silent	c.534	p.G178	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_GHS-R	-	no_errors	MLNR	HGNC	ENSG00000102539				13	0	0	5	5	50
PCDH17	0	genome.wustl.edu	37	13	58208617	58208617	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	58208617	58208617	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.1937	p.R646H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				247	0	0	127	45	26.1628
KLF12	0	genome.wustl.edu	37	13	74420073	74420073	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	74420073	74420073	G	A	SNP	KLF12	ENST00000377666	human	ensembl	74_37	-1	known	silent	c.561	p.P187	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF12	HGNC	ENSG00000118922				87	0	0	80	5	5.88235
MYCBP2	0	genome.wustl.edu	37	13	77720321	77720321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	77720321	77720321	C	T	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.7163	p.R2388H	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,pfscan_Filamin/ABP280_repeat-like	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				79	0	0	46	9	16.3636
SLITRK5	0	genome.wustl.edu	37	13	88327910	88327910	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	88327910	88327910	C	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	silent	c.267	p.S89	0.992	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				219	0	0	112	30	21.1268
GPC5	0	genome.wustl.edu	37	13	92346050	92346050	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	92346050	92346050	T	C	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	missense	c.935	p.I312T	0.977	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				122	0	0	81	25	23.5849
GPC6	0	genome.wustl.edu	37	13	93879765	93879765	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	93879765	93879765	T	C	SNP	GPC6	ENST00000377047	human	ensembl	74_37	+1	known	missense	c.56	p.L19P	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098				108	0	0	48	16	25
RAP2A	0	genome.wustl.edu	37	13	98086825	98086825	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	98086825	98086825	C	A	SNP	RAP2A	ENST00000245304	human	ensembl	74_37	+1	known	missense	c.101	p.P34H	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP2A	HGNC	ENSG00000125249				210	0	0	126	7	5.26316
CYP46A1	0	genome.wustl.edu	37	14	100182183	100182183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	100182183	100182183	C	T	SNP	CYP46A1	ENST00000261835	human	ensembl	74_37	+1	known	missense	c.730	p.R244W	0.677	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP46A1	HGNC	ENSG00000036530				73	0	0	39	16	29.0909
PPP2R5C	0	genome.wustl.edu	37	14	102368058	102368058	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	102368058	102368058	G	T	SNP	PPP2R5C	ENST00000422945	human	ensembl	74_37	+1	known	silent	c.948	p.V316	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5C	HGNC	ENSG00000078304				66	0	0	37	10	21.2766
WDR20	0	genome.wustl.edu	37	14	102675164	102675164	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	102675164	102675164	C	T	SNP	WDR20	ENST00000454394	human	ensembl	74_37	+1	known	silent	c.750	p.G250	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR20	HGNC	ENSG00000140153				74	0	0	38	19	33.3333
TECPR2	0	genome.wustl.edu	37	14	102915976	102915976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	102915976	102915976	C	T	SNP	TECPR2	ENST00000359520	human	ensembl	74_37	+1	known	missense	c.3086	p.T1029M	1.000	superfamily_RCC1/BLIP-II	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_RCC1/BLIP-II,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663				205	0	0	93	53	36.3014
CDC42BPB	0	genome.wustl.edu	37	14	103404710	103404710	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	103404710	103404710	G	A	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	silent	c.4866	p.P1622	0.000	NULL	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752				129	0	0	79	34	30.0885
CDC42BPB	0	genome.wustl.edu	37	14	103410756	103410756	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	103410756	103410756	T	C	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	missense	c.3880	p.I1294V	0.012	pfam_Citron,smart_Citron	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752				40	0	0	30	6	16.6667
EXOC3L4	0	genome.wustl.edu	37	14	103566851	103566851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	103566851	103566851	C	T	SNP	EXOC3L4	ENST00000380069	human	ensembl	74_37	+1	known	missense	c.295	p.H99Y	0.000	NULL	pfam_Sec6	-	no_errors	EXOC3L4	HGNC	ENSG00000205436				31	0	0	11	7	38.8889
ZFYVE21	0	genome.wustl.edu	37	14	104194188	104194188	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	104194188	104194188	T	C	SNP	ZFYVE21	ENST00000216602	human	ensembl	74_37	+1	known	missense	c.295	p.C99R	0.996	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE21	HGNC	ENSG00000100711				63	0	0	33	3	8.33333
AHNAK2	0	genome.wustl.edu	37	14	105413904	105413904	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	105413904	105413904	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.7884	p.A2628	0.006	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				374	0	0	194	85	30.4659
AHNAK2	0	genome.wustl.edu	37	14	105415580	105415580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	105415580	105415580	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.6208	p.H2070Y	0.328	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				221	0	0	134	9	6.29371
AHNAK2	0	genome.wustl.edu	37	14	105416463	105416463	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	105416463	105416463	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.5325	p.A1775	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				206	1	0.483092	79	38	32.4786
OR11G2	0	genome.wustl.edu	37	14	20665777	20665777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	20665777	20665777	G	A	SNP	OR11G2	ENST00000357366	human	ensembl	74_37	+1	known	missense	c.283	p.A95T	0.381	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11G2	HGNC	ENSG00000196832				107	0	0	63	30	32.2581
TEP1	0	genome.wustl.edu	37	14	20864060	20864060	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	20864060	20864060	G	T	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.1708	p.H570N	0.999	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				101	0	0	60	23	27.7108
OSGEP	0	genome.wustl.edu	37	14	20916116	20916116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	20916116	20916116	C	T	SNP	OSGEP	ENST00000206542	human	ensembl	74_37	-1	known	missense	c.740	p.R247Q	1.000	pfam_Gcp-like_dom,tigrfam_KAE1/YgjD	pfam_Gcp-like_dom,prints_KAE1/YgjD,tigrfam_KAE1/YgjD	-	no_errors	OSGEP	HGNC	ENSG00000092094				99	0	0	59	31	34.4444
PSMB11	0	genome.wustl.edu	37	14	23511563	23511563	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	23511563	23511563	C	T	SNP	PSMB11	ENST00000408907	human	ensembl	74_37	+1	known	silent	c.129	p.G43	0.998	NULL	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB11	HGNC	ENSG00000222028				129	0	0	91	5	5.20833
ACIN1	0	genome.wustl.edu	37	14	23564354	23564354	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	23564354	23564354	C	A	SNP	ACIN1	ENST00000262710	human	ensembl	74_37	-1	known	missense	c.142	p.A48S	1.000	NULL	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	ACIN1	HGNC	ENSG00000100813				57	0	0	30	11	26.8293
MYH6	0	genome.wustl.edu	37	14	23854244	23854244	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	23854244	23854244	T	C	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.5170	p.S1724G	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				87	0	0	43	19	30.6452
MYH6	0	genome.wustl.edu	37	14	23869968	23869968	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	23869968	23869968	G	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.1360	p.R454C	0.937	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				97	0	0	47	18	27.6923
MYH7	0	genome.wustl.edu	37	14	23889166	23889166	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	23889166	23889166	T	G	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.3614	p.E1205A	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				33	0	0	12	6	33.3333
LRRC16B	0	genome.wustl.edu	37	14	24525593	24525593	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	24525593	24525593	G	A	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	missense	c.856	p.E286K	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				42	0	0	14	7	33.3333
SDR39U1	0	genome.wustl.edu	37	14	24909407	24909407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	24909407	24909407	C	T	SNP	SDR39U1	ENST00000399395	human	ensembl	74_37	-1	known	missense	c.764	p.R255Q	0.252	pfam_DUF1731_C,tigrfam_Sugar_nucleotide_Epase_put	pfam_DUF1731_C,pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	-	no_errors	SDR39U1	HGNC	ENSG00000100445				29	0	0	12	6	33.3333
AKAP6	0	genome.wustl.edu	37	14	33292184	33292184	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	33292184	33292184	T	C	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	missense	c.5165	p.L1722P	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				99	0	0	70	38	35.1852
TTC6	0	genome.wustl.edu	37	14	38296430	38296430	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	38296430	38296430	T	C	SNP	TTC6	ENST00000478811	human	ensembl	74_37	+1	known	silent	c.1350	p.N450	0.998	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC6	HGNC	ENSG00000139865				44	0	0	35	10	22.2222
RPL10L	0	genome.wustl.edu	37	14	47120800	47120800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	47120800	47120800	G	A	SNP	RPL10L	ENST00000298283	human	ensembl	74_37	-1	known	missense	c.140	p.P47L	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10L	HGNC	ENSG00000165496				95	0	0	51	27	34.6154
SOS2	0	genome.wustl.edu	37	14	50585161	50585161	+	Silent	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	50585161	50585161	A	T	SNP	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	silent	c.3900	p.P1300	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				74	0	0	34	12	26.087
SAV1	0	genome.wustl.edu	37	14	51107479	51107479	+	Silent	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	51107479	51107479	T	G	SNP	SAV1	ENST00000324679	human	ensembl	74_37	-1	known	silent	c.939	p.R313	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_SARAH_dom,pfscan_WW_dom	-	no_errors	SAV1	HGNC	ENSG00000151748				59	0	0	39	11	22
NIN	0	genome.wustl.edu	37	14	51259462	51259462	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	51259462	51259462	G	A	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.403	p.P135S	0.199	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				101	0	0	79	5	5.95238
FRMD6	0	genome.wustl.edu	37	14	52186867	52186867	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	52186867	52186867	G	A	SNP	FRMD6	ENST00000344768	human	ensembl	74_37	+1	known	silent	c.1119	p.A373	0.001	NULL	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926				80	0	0	29	13	30.9524
PTGDR	0	genome.wustl.edu	37	14	52735331	52735331	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	52735331	52735331	C	T	SNP	PTGDR	ENST00000306051	human	ensembl	74_37	+1	known	silent	c.799	p.L267	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Prostanoid_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt,prints_Prostanoid_rcpt	-	no_errors	PTGDR	HGNC	ENSG00000168229				285	0	0	135	54	28.5714
ACTR10	0	genome.wustl.edu	37	14	58678052	58678052	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	58678052	58678052	C	T	SNP	ACTR10	ENST00000254286	human	ensembl	74_37	+1	known	silent	c.385	p.L129	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR10	HGNC	ENSG00000131966				202	0	0	112	40	26.3158
SIX6	0	genome.wustl.edu	37	14	60976534	60976534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	60976534	60976534	C	T	SNP	SIX6	ENST00000327720	human	ensembl	74_37	+1	known	missense	c.418	p.R140W	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX6	HGNC	ENSG00000184302				29	0	0	19	9	32.1429
HSPA2	0	genome.wustl.edu	37	14	65008404	65008404	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	65008404	65008404	G	A	SNP	HSPA2	ENST00000247207	human	ensembl	74_37	+1	known	silent	c.837	p.S279	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803				21	0	0	6	2	25
SLC8A3	0	genome.wustl.edu	37	14	70634521	70634521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	70634521	70634521	C	T	SNP	SLC8A3	ENST00000381269	human	ensembl	74_37	-1	known	missense	c.619	p.A207T	1.000	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678				46	0	0	29	6	17.1429
PCNX	0	genome.wustl.edu	37	14	71576248	71576248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	71576248	71576248	G	A	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.6824	p.R2275Q	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				80	0	0	33	9	21.4286
SIPA1L1	0	genome.wustl.edu	37	14	72190562	72190562	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	72190562	72190562	C	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	silent	c.4470	p.P1490	0.003	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				106	0	0	62	18	22.5
LTBP2	0	genome.wustl.edu	37	14	74973960	74973960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	74973960	74973960	C	T	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	missense	c.3829	p.E1277K	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				121	0	0	81	22	21.3592
LTBP2	0	genome.wustl.edu	37	14	75022288	75022288	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	75022288	75022288	G	A	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	silent	c.939	p.N313	0.991	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				102	1	0.970874	63	16	20.2532
PGF	0	genome.wustl.edu	37	14	75415222	75415222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	75415222	75415222	C	T	SNP	PGF	ENST00000405431	human	ensembl	74_37	-1	known	missense	c.380	p.R127H	0.001	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PGF	HGNC	ENSG00000119630				57	0	0	26	7	21.2121
EIF2B2	0	genome.wustl.edu	37	14	75470355	75470355	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	75470355	75470355	T	G	SNP	EIF2B2	ENST00000266126	human	ensembl	74_37	+1	known	missense	c.386	p.L129R	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B2	HGNC	ENSG00000119718				61	0	0	29	5	14.7059
AHSA1	0	genome.wustl.edu	37	14	77935581	77935581	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	77935581	77935581	C	T	SNP	AHSA1	ENST00000216479	human	ensembl	74_37	+1	known	missense	c.1006	p.R336C	1.000	NULL	pfam_AHSA1_N,pfam_Activator_of_Hsp90_ATPase,superfamily_AHSA1_N	-	no_errors	AHSA1	HGNC	ENSG00000100591				153	0	0	98	41	29.4964
CEP128	0	genome.wustl.edu	37	14	81259426	81259426	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	81259426	81259426	T	C	SNP	CEP128	ENST00000281129	human	ensembl	74_37	-1	known	missense	c.1238	p.E413G	1.000	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629				62	0	0	34	20	37.037
SEL1L	0	genome.wustl.edu	37	14	81993096	81993096	+	Silent	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	81993096	81993096	T	G	SNP	SEL1L	ENST00000336735	human	ensembl	74_37	-1	known	silent	c.321	p.P107	0.061	NULL	pfam_Sel1-like,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_Sel1-like,pfscan_FN_type2_col-bd	-	no_errors	SEL1L	HGNC	ENSG00000071537				127	0	0	72	27	27.2727
ZC3H14	0	genome.wustl.edu	37	14	89039116	89039116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	89039116	89039116	G	A	SNP	ZC3H14	ENST00000251038	human	ensembl	74_37	+1	known	missense	c.626	p.R209H	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H14	HGNC	ENSG00000100722				187	0	0	133	8	5.67376
PSMC1	0	genome.wustl.edu	37	14	90738656	90738656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	90738656	90738656	C	T	SNP	PSMC1	ENST00000261303	human	ensembl	74_37	+1	known	missense	c.1228	p.R410C	1.000	superfamily_P-loop_NTPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DUF815,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC1	HGNC	ENSG00000100764				24	0	0	7	7	50
NRDE2	0	genome.wustl.edu	37	14	90744727	90744727	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	90744727	90744727	G	A	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	missense	c.3448	p.R1150W	0.988	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				51	0	0	23	14	37.8378
RIN3	0	genome.wustl.edu	37	14	93043773	93043773	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	93043773	93043773	C	T	SNP	RIN3	ENST00000216487	human	ensembl	74_37	+1	known	silent	c.318	p.N106	0.000	smart_SH2,pfscan_SH2	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599				146	0	0	49	16	24.6154
UNC79	0	genome.wustl.edu	37	14	94120340	94120340	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	94120340	94120340	G	T	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.6434	p.S2145I	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				101	0	0	65	25	27.7778
SERPINA5	0	genome.wustl.edu	37	14	95056470	95056470	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	95056470	95056470	C	A	SNP	SERPINA5	ENST00000329597	human	ensembl	74_37	+1	known	missense	c.712	p.R238S	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488				57	0	0	28	7	20
SERPINA3	0	genome.wustl.edu	37	14	95081256	95081256	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	95081256	95081256	C	T	SNP	SERPINA3	ENST00000393078	human	ensembl	74_37	+1	known	silent	c.478	p.L160	0.218	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA3	HGNC	ENSG00000196136				50	0	0	22	11	33.3333
BDKRB2	0	genome.wustl.edu	37	14	96706965	96706965	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	96706965	96706965	C	T	SNP	BDKRB2	ENST00000306005	human	ensembl	74_37	+1	known	silent	c.300	p.A100	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Brdyknn_2_rcpt,prints_GPCR_Rhodpsn,prints_Brdyknn_rcpt,prints_ATII_rcpt	-	no_errors	BDKRB2	HGNC	ENSG00000168398				175	0	0	87	50	36.4964
LYSMD4	0	genome.wustl.edu	37	15	100269416	100269416	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	100269416	100269416	G	T	SNP	LYSMD4	ENST00000344791	human	ensembl	74_37	-1	known	missense	c.806	p.P269Q	0.330	NULL	NULL	-	no_errors	LYSMD4	HGNC	ENSG00000183060				111	0	0	60	30	33.3333
LRRK1	0	genome.wustl.edu	37	15	101565120	101565120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	101565120	101565120	C	T	SNP	LRRK1	ENST00000388948	human	ensembl	74_37	+1	known	missense	c.2180	p.A727V	1.000	pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_P-loop_NTPase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237				257	1	0.387597	139	78	35.9447
DNM1P47	0	genome.wustl.edu	37	15	102291306	102291306	+	RNA	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	102291306	102291306	T	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				18	0	0	10	7	41.1765
OR4F6	0	genome.wustl.edu	37	15	102345982	102345982	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	102345982	102345982	G	A	SNP	OR4F6	ENST00000328882	human	ensembl	74_37	+1	known	silent	c.60	p.S20	0.001	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4F6	HGNC	ENSG00000184140				140	0	0	107	17	13.7097
OR4M2	0	genome.wustl.edu	37	15	22369288	22369288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	22369288	22369288	C	T	SNP	OR4M2	ENST00000332663	human	ensembl	74_37	+1	putative	missense	c.713	p.A238V	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974				97	0	0	61	20	24.6914
TUBGCP5	0	genome.wustl.edu	37	15	22851104	22851104	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	22851104	22851104	C	T	SNP	TUBGCP5	ENST00000283645	human	ensembl	74_37	+1	known	nonsense	c.1366	p.Q456*	1.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP5	HGNC	ENSG00000153575				90	0	0	48	9	15.7895
SNHG14	0	genome.wustl.edu	37	15	25456809	25456809	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	25456809	25456809	G	A	SNP	SNHG14	ENST00000424208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				26	0	0	1	3	75
GABRA5	0	genome.wustl.edu	37	15	27114364	27114364	+	RNA	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	27114364	27114364	T	C	SNP	GABRA5	ENST00000557449	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.102	-	-	-	no_errors	GABRA5	HGNC	ENSG00000186297				49	0	0	20	6	23.0769
OCA2	0	genome.wustl.edu	37	15	28326974	28326974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	28326974	28326974	G	A	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	missense	c.47	p.A16V	0.112	NULL	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				39	0	0	13	9	40.9091
NDNL2	0	genome.wustl.edu	37	15	29561064	29561064	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	29561064	29561064	G	T	SNP	NDNL2	ENST00000332303	human	ensembl	74_37	-1	known	nonsense	c.846	p.Y282*	0.997	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDNL2	HGNC	ENSG00000185115				117	0	0	39	25	39.0625
TJP1	0	genome.wustl.edu	37	15	30029534	30029534	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	30029534	30029534	T	C	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	silent	c.1341	p.V447	0.050	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067				119	0	0	97	17	14.9123
ARHGAP11A	0	genome.wustl.edu	37	15	32929210	32929210	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	32929210	32929210	G	T	SNP	ARHGAP11A	ENST00000361627	human	ensembl	74_37	+1	known	missense	c.2236	p.G746C	0.039	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826				74	0	0	36	8	18.1818
SLC12A6	0	genome.wustl.edu	37	15	34532875	34532875	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	34532875	34532875	A	G	SNP	SLC12A6	ENST00000558589	human	ensembl	74_37	-1	known	missense	c.2396	p.L799S	0.923	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199				73	0	0	46	18	28.125
LPCAT4	0	genome.wustl.edu	37	15	34652412	34652412	+	Splice_Site	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	34652412	34652412	T	C	SNP	LPCAT4	ENST00000314891	human	ensembl	74_37	-1	known	splice_site	c.1144-2	e12-2	0.983	-	-	-	no_errors	LPCAT4	HGNC	ENSG00000176454				63	0	0	33	16	32.6531
MEIS2	0	genome.wustl.edu	37	15	37390290	37390290	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	37390290	37390290	G	A	SNP	MEIS2	ENST00000561208	human	ensembl	74_37	-1	known	silent	c.123	p.H41	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS2	HGNC	ENSG00000134138				99	0	0	45	29	39.1892
BUB1B	0	genome.wustl.edu	37	15	40512803	40512803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	40512803	40512803	G	A	SNP	BUB1B	ENST00000412359	human	ensembl	74_37	+1	known	missense	c.3038	p.R1013Q	1.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970				139	0	0	77	25	24.5098
DISP2	0	genome.wustl.edu	37	15	40661464	40661464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	40661464	40661464	C	T	SNP	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	missense	c.3151	p.R1051C	1.000	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				147	0	0	95	27	22.1311
RHOV	0	genome.wustl.edu	37	15	41165405	41165405	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	41165405	41165405	C	T	SNP	RHOV	ENST00000220507	human	ensembl	74_37	-1	known	missense	c.562	p.A188T	0.990	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOV	HGNC	ENSG00000104140				126	0	0	63	29	31.5217
VPS18	0	genome.wustl.edu	37	15	41194934	41194934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	41194934	41194934	G	A	SNP	VPS18	ENST00000220509	human	ensembl	74_37	+1	known	missense	c.2317	p.A773T	1.000	NULL	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142				65	0	0	41	13	24.0741
NUSAP1	0	genome.wustl.edu	37	15	41641419	41641419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	41641419	41641419	C	T	SNP	NUSAP1	ENST00000559596	human	ensembl	74_37	+1	known	missense	c.286	p.R96C	0.000	NULL	NULL	-	no_errors	NUSAP1	HGNC	ENSG00000137804				59	0	0	34	13	27.6596
SPTBN5	0	genome.wustl.edu	37	15	42162064	42162064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	42162064	42162064	C	T	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	missense	c.5828	p.R1943H	0.020	NULL	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877				11	0	0	5	4	44.4444
CAPN3	0	genome.wustl.edu	37	15	42703188	42703188	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	42703188	42703188	G	T	SNP	CAPN3	ENST00000397163	human	ensembl	74_37	+1	known	missense	c.2370	p.E790D	1.000	pfscan_EF_hand_dom	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN3	HGNC	ENSG00000092529				93	0	0	53	18	25.3521
UBR1	0	genome.wustl.edu	37	15	43378309	43378309	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	43378309	43378309	A	G	SNP	UBR1	ENST00000290650	human	ensembl	74_37	-1	known	missense	c.211	p.F71L	0.998	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459				143	0	0	79	28	26.1682
CATSPER2	0	genome.wustl.edu	37	15	43924970	43924970	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	43924970	43924970	G	T	SNP	CATSPER2	ENST00000321596	human	ensembl	74_37	-1	known	silent	c.1341	p.S447	0.003	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762				72	0	0	28	3	9.67742
CATSPER2	0	genome.wustl.edu	37	15	43925000	43925000	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	43925000	43925000	C	T	SNP	CATSPER2	ENST00000321596	human	ensembl	74_37	-1	known	silent	c.1311	p.K437	0.000	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762				74	0	0	27	14	34.1463
HYPK	0	genome.wustl.edu	37	15	44093712	44093712	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	44093712	44093712	G	A	SNP	HYPK	ENST00000498605	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.911	-	-	-	no_errors	HYPK	HGNC	ENSG00000242028				59	0	0	25	15	37.5
WDR76	0	genome.wustl.edu	37	15	44127316	44127316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	44127316	44127316	G	A	SNP	WDR76	ENST00000263795	human	ensembl	74_37	+1	known	missense	c.520	p.A174T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470				72	0	0	35	15	30
DUOX1	0	genome.wustl.edu	37	15	45445636	45445636	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	45445636	45445636	C	T	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	silent	c.3483	p.S1161	0.983	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				218	0	0	127	56	30.6011
SLC12A1	0	genome.wustl.edu	37	15	48566829	48566829	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	48566829	48566829	T	C	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	missense	c.2464	p.S822P	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				28	0	0	14	10	41.6667
HDC	0	genome.wustl.edu	37	15	50534848	50534848	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	50534848	50534848	G	T	SNP	HDC	ENST00000267845	human	ensembl	74_37	-1	known	missense	c.1598	p.P533H	0.029	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	HDC	HGNC	ENSG00000140287				49	0	0	19	11	36.6667
HDC	0	genome.wustl.edu	37	15	50544900	50544900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	50544900	50544900	G	A	SNP	HDC	ENST00000267845	human	ensembl	74_37	-1	known	missense	c.859	p.R287W	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	HDC	HGNC	ENSG00000140287				34	0	0	17	13	43.3333
HDC	0	genome.wustl.edu	37	15	50546332	50546332	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	50546332	50546332	C	T	SNP	HDC	ENST00000267845	human	ensembl	74_37	-1	known	missense	c.715	p.V239I	0.094	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	HDC	HGNC	ENSG00000140287				54	0	0	25	11	30.5556
UNC13C	0	genome.wustl.edu	37	15	54786884	54786884	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	54786884	54786884	A	G	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.5012	p.Y1671C	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				135	0	0	95	21	18.1034
SLTM	0	genome.wustl.edu	37	15	59186705	59186705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	59186705	59186705	C	T	SNP	SLTM	ENST00000380516	human	ensembl	74_37	-1	known	missense	c.1304	p.S435N	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776				163	0	0	113	30	20.979
FOXB1	0	genome.wustl.edu	37	15	60297193	60297193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	60297193	60297193	G	A	SNP	FOXB1	ENST00000396057	human	ensembl	74_37	+1	known	missense	c.31	p.D11N	1.000	smart_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXB1	HGNC	ENSG00000171956				49	0	0	18	15	45.4545
RORA	0	genome.wustl.edu	37	15	60806925	60806925	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	60806925	60806925	G	A	SNP	RORA	ENST00000261523	human	ensembl	74_37	-1	known	missense	c.413	p.A138V	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORA	HGNC	ENSG00000069667				74	0	0	53	30	36.1446
TPM1	0	genome.wustl.edu	37	15	63353977	63353977	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	63353977	63353977	A	G	SNP	TPM1	ENST00000267996	human	ensembl	74_37	+1	known	missense	c.629	p.Q210R	1.000	pfam_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM1	HGNC	ENSG00000140416				40	0	0	23	3	11.5385
CILP	0	genome.wustl.edu	37	15	65497795	65497795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	65497795	65497795	C	T	SNP	CILP	ENST00000261883	human	ensembl	74_37	-1	known	missense	c.434	p.R145H	0.767	superfamily_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP	HGNC	ENSG00000138615				43	0	0	18	9	33.3333
CILP	0	genome.wustl.edu	37	15	65499345	65499345	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	65499345	65499345	C	T	SNP	CILP	ENST00000261883	human	ensembl	74_37	-1	known	missense	c.199	p.G67R	0.998	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP	HGNC	ENSG00000138615				39	0	0	27	5	15.625
IGDCC4	0	genome.wustl.edu	37	15	65681222	65681222	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	65681222	65681222	C	T	SNP	IGDCC4	ENST00000352385	human	ensembl	74_37	-1	novel	silent	c.2631	p.E877	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC4	HGNC	ENSG00000103742				102	0	0	61	25	29.0698
SMAD6	0	genome.wustl.edu	37	15	67073733	67073733	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	67073733	67073733	G	A	SNP	SMAD6	ENST00000288840	human	ensembl	74_37	+1	known	missense	c.1351	p.E451K	0.998	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD6	HGNC	ENSG00000137834				36	0	0	11	5	31.25
GRAMD2	0	genome.wustl.edu	37	15	72459385	72459385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	72459385	72459385	C	T	SNP	GRAMD2	ENST00000309731	human	ensembl	74_37	-1	known	missense	c.421	p.A141T	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD2	HGNC	ENSG00000175318				89	0	0	60	14	18.9189
HCN4	0	genome.wustl.edu	37	15	73617718	73617718	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	73617718	73617718	T	C	SNP	HCN4	ENST00000261917	human	ensembl	74_37	-1	known	missense	c.1658	p.D553G	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622				239	0	0	141	38	21.2291
CSK	0	genome.wustl.edu	37	15	75090973	75090973	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	75090973	75090973	T	C	SNP	CSK	ENST00000220003	human	ensembl	74_37	+1	known	silent	c.33	p.G11	1.000	superfamily_SH3_domain,pfscan_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	CSK	HGNC	ENSG00000103653				45	0	0	31	11	26.1905
LMAN1L	0	genome.wustl.edu	37	15	75108796	75108796	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	75108796	75108796	A	G	SNP	LMAN1L	ENST00000309664	human	ensembl	74_37	+1	known	missense	c.359	p.H120R	0.008	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	-	no_errors	LMAN1L	HGNC	ENSG00000140506				131	0	0	56	43	43.4343
SCAMP2	0	genome.wustl.edu	37	15	75142904	75142904	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	75142904	75142904	T	C	SNP	SCAMP2	ENST00000268099	human	ensembl	74_37	-1	known	missense	c.583	p.T195A	1.000	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP2	HGNC	ENSG00000140497				171	0	0	119	8	6.29921
NEIL1	0	genome.wustl.edu	37	15	75644525	75644525	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	75644525	75644525	T	C	SNP	NEIL1	ENST00000355059	human	ensembl	74_37	+1	known	missense	c.508	p.F170L	1.000	pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_Ribosomal_S13-like_H2TH	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398				81	0	0	53	9	14.5161
NEIL1	0	genome.wustl.edu	37	15	75644698	75644698	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	75644698	75644698	G	A	SNP	NEIL1	ENST00000355059	human	ensembl	74_37	+1	known	silent	c.588	p.S196	0.034	pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_Ribosomal_S13-like_H2TH	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398				156	0	0	83	33	28.4483
SIN3A	0	genome.wustl.edu	37	15	75706642	75706642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	75706642	75706642	G	A	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	missense	c.377	p.A126V	1.000	superfamily_PAH	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375				22	0	0	19	6	24
CSPG4	0	genome.wustl.edu	37	15	75982670	75982670	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	75982670	75982670	G	A	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.736	p.R246W	0.963	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				48	0	0	22	6	21.4286
CSPG4	0	genome.wustl.edu	37	15	75982740	75982740	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	75982740	75982740	G	A	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	silent	c.666	p.D222	0.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				49	0	0	17	4	19.0476
ZFAND6	0	genome.wustl.edu	37	15	80414053	80414053	+	Splice_Site	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	80414053	80414053	G	A	SNP	ZFAND6	ENST00000261749	human	ensembl	74_37	+1	known	splice_site	c.155-1	e2-1	1.000	-	-	-	no_errors	ZFAND6	HGNC	ENSG00000086666				56	0	0	37	9	19.5652
HOMER2	0	genome.wustl.edu	37	15	83523551	83523551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	83523551	83523551	C	T	SNP	HOMER2	ENST00000304231	human	ensembl	74_37	-1	known	missense	c.529	p.A177T	0.830	NULL	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	HOMER2	HGNC	ENSG00000103942				97	0	0	91	6	6.18557
MFGE8	0	genome.wustl.edu	37	15	89453092	89453092	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	89453092	89453092	G	A	SNP	MFGE8	ENST00000268150	human	ensembl	74_37	-1	known	nonsense	c.136	p.R46*	0.604	pfam_EG-like_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,smart_EG-like_dom,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	MFGE8	HGNC	ENSG00000140545				141	0	0	69	39	36.1111
FURIN	0	genome.wustl.edu	37	15	91424619	91424619	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	91424619	91424619	C	T	SNP	FURIN	ENST00000268171	human	ensembl	74_37	+1	known	silent	c.1896	p.D632	0.985	superfamily_Growth_fac_rcpt_N_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	FURIN	HGNC	ENSG00000140564				125	0	0	77	21	21.4286
SLCO3A1	0	genome.wustl.edu	37	15	92397293	92397293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	92397293	92397293	C	T	SNP	SLCO3A1	ENST00000318445	human	ensembl	74_37	+1	known	missense	c.155	p.A52V	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				22	0	0	6	3	33.3333
IGF1R	0	genome.wustl.edu	37	15	99465555	99465555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	99465555	99465555	C	T	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	missense	c.2380	p.R794W	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443				59	0	0	25	16	39.0244
BAIAP3	0	genome.wustl.edu	37	16	1397564	1397564	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	1397564	1397564	C	T	SNP	BAIAP3	ENST00000324385	human	ensembl	74_37	+1	known	missense	c.2947	p.R983W	1.000	pfam_Munc13_subgr_dom-2	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	BAIAP3	HGNC	ENSG00000007516				17	0	0	11	5	31.25
IFT140	0	genome.wustl.edu	37	16	1576005	1576005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	1576005	1576005	C	T	SNP	IFT140	ENST00000426508	human	ensembl	74_37	-1	known	missense	c.2651	p.R884Q	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535				17	0	0	4	3	42.8571
NDE1	0	genome.wustl.edu	37	16	15781279	15781279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	15781279	15781279	C	T	SNP	NDE1	ENST00000396353	human	ensembl	74_37	+1	known	missense	c.434	p.A145V	1.000	pfam_NUDE_C	pfam_NUDE_C	-	no_errors	NDE1	HGNC	ENSG00000072864				63	0	0	22	7	24.1379
MYH11	0	genome.wustl.edu	37	16	15813528	15813528	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	15813528	15813528	C	T	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	missense	c.5017	p.A1673T	0.999	pfam_Myosin_tail,superfamily_t-SNARE	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				112	0	0	60	25	29.4118
IFT140	0	genome.wustl.edu	37	16	1642178	1642178	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	1642178	1642178	G	A	SNP	IFT140	ENST00000426508	human	ensembl	74_37	-1	known	silent	c.633	p.D211	0.993	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535				74	0	0	51	19	27.1429
CRAMP1L	0	genome.wustl.edu	37	16	1706049	1706049	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	1706049	1706049	C	T	SNP	CRAMP1L	ENST00000293925	human	ensembl	74_37	+1	known	missense	c.1291	p.R431W	0.996	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545				31	0	0	14	7	33.3333
CRAMP1L	0	genome.wustl.edu	37	16	1716093	1716093	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	1716093	1716093	C	T	SNP	CRAMP1L	ENST00000293925	human	ensembl	74_37	+1	known	silent	c.2772	p.P924	1.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545				25	0	0	14	2	12.5
SMG1	0	genome.wustl.edu	37	16	18880551	18880551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	18880551	18880551	C	T	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	missense	c.2708	p.R903H	0.997	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				41	0	0	23	12	34.2857
C16orf62	0	genome.wustl.edu	37	16	19702698	19702698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	19702698	19702698	G	A	SNP	C16orf62	ENST00000438132	human	ensembl	74_37	+1	known	missense	c.2818	p.G940R	1.000	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544				45	0	0	37	3	7.5
ZNF598	0	genome.wustl.edu	37	16	2051135	2051135	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	2051135	2051135	C	T	SNP	ZNF598	ENST00000431526	human	ensembl	74_37	-1	known	silent	c.1071	p.Q357	0.251	NULL	superfamily_PAH,smart_Znf_C2H2-like,pfscan_Znf_RING	-	no_errors	ZNF598	HGNC	ENSG00000167962				29	0	0	7	3	30
PKD1	0	genome.wustl.edu	37	16	2160688	2160688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	2160688	2160688	G	A	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.4480	p.R1494C	0.121	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				48	0	0	15	11	42.3077
GGA2	0	genome.wustl.edu	37	16	23480253	23480253	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	23480253	23480253	G	T	SNP	GGA2	ENST00000309859	human	ensembl	74_37	-1	known	missense	c.1685	p.P562H	1.000	pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ENTH_VHS,superfamily_Coatomer/clathrin_app_Ig-like,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA2	HGNC	ENSG00000103365				95	0	0	56	21	27.2727
TNRC6A	0	genome.wustl.edu	37	16	24801392	24801392	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	24801392	24801392	A	G	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.1429	p.S477G	0.996	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				56	0	0	28	13	31.7073
ZKSCAN2	0	genome.wustl.edu	37	16	25251835	25251835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	25251835	25251835	C	T	SNP	ZKSCAN2	ENST00000328086	human	ensembl	74_37	-1	known	missense	c.2206	p.V736I	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN2	HGNC	ENSG00000155592				51	0	0	29	22	43.1373
HS3ST4	0	genome.wustl.edu	37	16	26147016	26147016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	26147016	26147016	G	A	SNP	HS3ST4	ENST00000331351	human	ensembl	74_37	+1	known	missense	c.818	p.R273H	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST4	HGNC	ENSG00000182601				86	0	0	40	20	33.3333
KIAA0556	0	genome.wustl.edu	37	16	27761081	27761081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	27761081	27761081	C	T	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	missense	c.2800	p.R934W	0.419	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				34	0	0	18	4	18.1818
SRRM2	0	genome.wustl.edu	37	16	2814062	2814062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	2814062	2814062	C	T	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	missense	c.3533	p.A1178V	0.003	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				125	0	0	57	25	30.4878
SRRM2	0	genome.wustl.edu	37	16	2817604	2817604	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	2817604	2817604	G	A	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	missense	c.7075	p.A2359T	0.084	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				182	0	0	78	38	32.7586
SULT1A1	0	genome.wustl.edu	37	16	28618378	28618378	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	28618378	28618378	G	A	SNP	SULT1A1	ENST00000314752	human	ensembl	74_37	-1	known	silent	c.393	p.N131	0.999	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A1	HGNC	ENSG00000196502				187	0	0	125	11	8.08824
PRSS21	0	genome.wustl.edu	37	16	2871411	2871411	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	2871411	2871411	G	T	SNP	PRSS21	ENST00000005995	human	ensembl	74_37	+1	known	missense	c.750	p.W250C	0.995	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS21	HGNC	ENSG00000007038				77	0	0	60	4	6.25
ATP2A1	0	genome.wustl.edu	37	16	28909569	28909569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	28909569	28909569	G	A	SNP	ATP2A1	ENST00000357084	human	ensembl	74_37	+1	known	missense	c.1561	p.V521I	1.000	superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Ca-transp_IIA	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A1	HGNC	ENSG00000196296				133	1	0.746269	58	26	30.9524
RRN3P2	0	genome.wustl.edu	37	16	29110458	29110458	+	RNA	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	29110458	29110458	T	C	SNP	RRN3P2	ENST00000427965	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	RRN3P2	HGNC	ENSG00000103472				62	0	0	44	5	10.2041
NPIPB11	0	genome.wustl.edu	37	16	29394404	29394404	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	29394404	29394404	G	T	SNP	NPIPB11	ENST00000524087	human	ensembl	74_37	-1	putative	missense	c.1849	p.Q617K	0.108	NULL	NULL	-	no_errors	NPIPB11	HGNC	ENSG00000254206				96	0	0	54	10	15.625
SEPHS2	0	genome.wustl.edu	37	16	30455992	30455992	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	30455992	30455992	C	T	SNP	SEPHS2	ENST00000542752	human	ensembl	74_37	-1	known	missense	c.886	p.V296I	1.000	pfam_AIR_synth_C_dom,superfamily_AIR_synth_C_dom,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS2	HGNC	ENSG00000179918				87	0	0	55	15	21.4286
ZNF768	0	genome.wustl.edu	37	16	30536304	30536304	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	30536304	30536304	G	A	SNP	ZNF768	ENST00000380412	human	ensembl	74_37	-1	known	missense	c.1157	p.S386L	0.981	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_RNA_pol_II_repeat_euk,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF768	HGNC	ENSG00000169957				49	0	0	26	7	21.2121
SRCAP	0	genome.wustl.edu	37	16	30750269	30750269	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	30750269	30750269	C	A	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.8908	p.P2970T	0.998	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				116	0	0	74	32	30.1887
SETD1A	0	genome.wustl.edu	37	16	30982758	30982758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	30982758	30982758	G	A	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	missense	c.3076	p.E1026K	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				182	1	0.546448	103	37	26.4286
MMP25	0	genome.wustl.edu	37	16	3100409	3100409	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	3100409	3100409	G	C	SNP	MMP25	ENST00000336577	human	ensembl	74_37	+1	known	missense	c.523	p.A175P	0.042	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP25	HGNC	ENSG00000008516				74	0	0	35	18	33.9623
ZNF646	0	genome.wustl.edu	37	16	31088572	31088572	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	31088572	31088572	G	A	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	silent	c.927	p.L309	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				45	0	0	52	3	5.45455
ZNF646	0	genome.wustl.edu	37	16	31091411	31091411	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	31091411	31091411	C	T	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	nonsense	c.3766	p.R1256*	0.975	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				87	0	0	49	9	15.5172
ZNF646	0	genome.wustl.edu	37	16	31092651	31092651	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	31092651	31092651	C	T	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.5006	p.A1669V	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				50	0	0	17	10	37.037
PYDC1	0	genome.wustl.edu	37	16	31228091	31228091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	31228091	31228091	G	A	SNP	PYDC1	ENST00000302964	human	ensembl	74_37	-1	known	missense	c.259	p.R87W	0.000	pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN	-	no_errors	PYDC1	HGNC	ENSG00000169900				100	0	0	57	22	27.8481
ZSCAN10	0	genome.wustl.edu	37	16	3139433	3139433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	3139433	3139433	C	T	SNP	ZSCAN10	ENST00000252463	human	ensembl	74_37	-1	known	missense	c.1837	p.G613S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN10	HGNC	ENSG00000130182				63	0	0	24	14	36.8421
BMS1P8	0	genome.wustl.edu	37	16	33490478	33490478	+	RNA	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	33490478	33490478	T	C	SNP	BMS1P8	ENST00000567036	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BMS1P8	HGNC	ENSG00000260518				22	0	0	18	6	25
TIGD7	0	genome.wustl.edu	37	16	3349597	3349597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	3349597	3349597	G	A	SNP	TIGD7	ENST00000268674	human	ensembl	74_37	-1	known	missense	c.1018	p.R340W	0.935	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD7	HGNC	ENSG00000140993				46	0	0	24	15	38.4615
CREBBP	0	genome.wustl.edu	37	16	3777887	3777887	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	3777887	3777887	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	silent	c.7161	p.L2387	0.269	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				213	0	0	118	45	27.6074
CREBBP	0	genome.wustl.edu	37	16	3781302	3781302	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	3781302	3781302	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.5063	p.T1688M	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				52	0	0	30	5	14.2857
CREBBP	0	genome.wustl.edu	37	16	3786655	3786655	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	3786655	3786655	T	C	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.4556	p.Y1519C	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				136	0	0	65	34	34.3434
SRL	0	genome.wustl.edu	37	16	4292061	4292061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	4292061	4292061	G	A	SNP	SRL	ENST00000572111	human	ensembl	74_37	-1	known	missense	c.8	p.A3V	0.943	NULL	NULL	-	no_errors	SRL	HGNC	ENSG00000185739				17	0	0	14	6	30
CORO7-PAM16	0	genome.wustl.edu	37	16	4414675	4414675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	4414675	4414675	C	T	SNP	CORO7-PAM16	ENST00000572467	human	ensembl	74_37	-1	known	missense	c.1060	p.E354K	0.964	pfam_DUF1900	pfam_DUF1900,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7-PAM16	HGNC	ENSG00000103426				16	0	0	6	2	25
SEPT12	0	genome.wustl.edu	37	16	4834042	4834042	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	4834042	4834042	G	A	SNP	SEPT12	ENST00000268231	human	ensembl	74_37	-1	known	silent	c.402	p.N134	0.995	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_AIG1,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT12	HGNC	ENSG00000140623				215	2	0.921659	120	47	28.1437
ADCY7	0	genome.wustl.edu	37	16	50342322	50342322	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	50342322	50342322	G	A	SNP	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	silent	c.1935	p.S645	0.990	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281				100	0	0	60	9	13.0435
ADCY7	0	genome.wustl.edu	37	16	50346848	50346848	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	50346848	50346848	C	T	SNP	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	silent	c.2652	p.S884	0.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281				84	0	0	46	9	16.3636
BRD7	0	genome.wustl.edu	37	16	50354205	50354205	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	50354205	50354205	C	T	SNP	BRD7	ENST00000394689	human	ensembl	74_37	-1	known	silent	c.1713	p.P571	0.684	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164				62	0	0	28	13	31.7073
CHD9	0	genome.wustl.edu	37	16	53276875	53276875	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	53276875	53276875	A	G	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.3001	p.R1001G	1.000	pfam_SNF2_N,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				84	0	0	47	17	26.5625
IRX5	0	genome.wustl.edu	37	16	54966466	54966466	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	54966466	54966466	C	T	SNP	IRX5	ENST00000394636	human	ensembl	74_37	+1	known	silent	c.306	p.Y102	0.992	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX5	HGNC	ENSG00000176842				75	0	0	35	13	27.0833
IRX6	0	genome.wustl.edu	37	16	55361530	55361530	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	55361530	55361530	G	A	SNP	IRX6	ENST00000290552	human	ensembl	74_37	+1	known	missense	c.446	p.R149H	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX6	HGNC	ENSG00000159387				26	0	0	11	6	35.2941
AMFR	0	genome.wustl.edu	37	16	56419830	56419830	+	Splice_Site	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	56419830	56419830	C	T	SNP	AMFR	ENST00000290649	human	ensembl	74_37	-1	known	splice_site	c.1380+1	e10+1	1.000	-	-	-	no_errors	AMFR	HGNC	ENSG00000159461				45	0	0	23	7	23.3333
NLRC5	0	genome.wustl.edu	37	16	57100498	57100498	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	57100498	57100498	G	T	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	nonsense	c.4294	p.E1432*	0.395	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				51	0	0	25	6	19.3548
NLRC5	0	genome.wustl.edu	37	16	57111659	57111659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	57111659	57111659	G	A	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	missense	c.4948	p.G1650R	0.533	smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				88	0	0	38	21	35.5932
CNOT1	0	genome.wustl.edu	37	16	58581543	58581543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	58581543	58581543	C	T	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.3566	p.R1189H	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				42	0	0	32	16	33.3333
CDH8	0	genome.wustl.edu	37	16	61688000	61688000	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	61688000	61688000	C	T	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	missense	c.1912	p.V638M	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				46	0	0	26	7	21.2121
CDH16	0	genome.wustl.edu	37	16	66943992	66943992	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	66943992	66943992	G	A	SNP	CDH16	ENST00000299752	human	ensembl	74_37	-1	known	silent	c.2172	p.S724	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589				87	0	0	38	23	37.7049
ELMO3	0	genome.wustl.edu	37	16	67236560	67236560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	67236560	67236560	C	T	SNP	ELMO3	ENST00000393997	human	ensembl	74_37	+1	known	missense	c.1588	p.R530C	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO3	HGNC	ENSG00000102890				64	0	0	38	3	7.31707
LRRC36	0	genome.wustl.edu	37	16	67410682	67410682	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	67410682	67410682	G	A	SNP	LRRC36	ENST00000329956	human	ensembl	74_37	+1	known	silent	c.1713	p.P571	1.000	NULL	NULL	-	no_errors	LRRC36	HGNC	ENSG00000159708				141	0	0	83	30	26.5487
ENKD1	0	genome.wustl.edu	37	16	67697400	67697400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	67697400	67697400	G	A	SNP	ENKD1	ENST00000243878	human	ensembl	74_37	-1	known	missense	c.803	p.P268L	1.000	NULL	NULL	-	no_errors	ENKD1	HGNC	ENSG00000124074				77	0	0	37	21	36.2069
ENSG00000221526	0	genome.wustl.edu	37	16	67911587	67911587	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	67911587	67911587	G	A	SNP	ENSG00000221526	ENST00000408599	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC040162.1	Clone_based_ensembl_gene	ENSG00000221526				65	0	0	40	29	42.029
CTRL	0	genome.wustl.edu	37	16	67964403	67964403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	67964403	67964403	C	T	SNP	CTRL	ENST00000574481	human	ensembl	74_37	-1	known	missense	c.407	p.R136H	0.000	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CTRL	HGNC	ENSG00000141086				210	0	0	113	60	34.6821
LCAT	0	genome.wustl.edu	37	16	67974268	67974268	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	67974268	67974268	C	T	SNP	LCAT	ENST00000264005	human	ensembl	74_37	-1	known	missense	c.862	p.V288M	0.971	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	LCAT	HGNC	ENSG00000213398				130	0	0	59	32	35.1648
NOB1	0	genome.wustl.edu	37	16	69782983	69782983	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	69782983	69782983	C	T	SNP	NOB1	ENST00000268802	human	ensembl	74_37	-1	known	silent	c.564	p.E188	0.011	pirsf_D-site_20S_pre-rRNA_nuclease	pfam_NOB1_Zn-bd,smart_PIN_dom,pirsf_D-site_20S_pre-rRNA_nuclease	-	no_errors	NOB1	HGNC	ENSG00000141101				89	0	0	51	11	17.7419
FUK	0	genome.wustl.edu	37	16	70505166	70505166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	70505166	70505166	C	T	SNP	FUK	ENST00000378912	human	ensembl	74_37	+1	known	missense	c.1348	p.R450C	0.386	pfam_Fucokinase	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353				15	0	0	6	6	50
CMTR2	0	genome.wustl.edu	37	16	71318067	71318067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	71318067	71318067	G	A	SNP	CMTR2	ENST00000338099	human	ensembl	74_37	-1	known	missense	c.1757	p.S586L	0.886	NULL	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	CMTR2	HGNC	ENSG00000180917				35	0	0	8	7	46.6667
PHLPP2	0	genome.wustl.edu	37	16	71748635	71748635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	71748635	71748635	C	T	SNP	PHLPP2	ENST00000356272	human	ensembl	74_37	-1	known	missense	c.64	p.D22N	1.000	NULL	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom	-	no_errors	PHLPP2	HGNC	ENSG00000040199				47	0	0	20	9	31.0345
RBFOX1	0	genome.wustl.edu	37	16	7680608	7680608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	7680608	7680608	C	T	SNP	RBFOX1	ENST00000547372	human	ensembl	74_37	+1	known	missense	c.809	p.T270M	1.000	pirsf_RNA-bd_Fox-1	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC	ENSG00000078328				56	0	0	43	12	21.8182
BANP	0	genome.wustl.edu	37	16	88061178	88061178	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	88061178	88061178	C	T	SNP	BANP	ENST00000286122	human	ensembl	74_37	+1	known	missense	c.961	p.R321C	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BANP	HGNC	ENSG00000172530				140	0	0	52	24	31.5789
SNAI3	0	genome.wustl.edu	37	16	88747890	88747890	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	88747890	88747890	T	C	SNP	SNAI3	ENST00000332281	human	ensembl	74_37	-1	known	silent	c.309	p.V103	0.177	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI3	HGNC	ENSG00000185669				175	1	0.568182	117	35	23.0263
ANKRD11	0	genome.wustl.edu	37	16	89345696	89345696	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	89345696	89345696	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	silent	c.7254	p.I2418	0.571	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				32	0	0	8	3	27.2727
SPIRE2	0	genome.wustl.edu	37	16	89936585	89936585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	89936585	89936585	C	T	SNP	SPIRE2	ENST00000378247	human	ensembl	74_37	+1	known	missense	c.2050	p.R684C	1.000	superfamily_Znf_FYVE_PHD	superfamily_Znf_FYVE_PHD,smart_KIND	-	no_errors	SPIRE2	HGNC	ENSG00000204991				23	0	0	8	2	20
MYH13	0	genome.wustl.edu	37	17	10233779	10233779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	10233779	10233779	G	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.2360	p.T787M	0.004	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				22	0	0	10	10	50
MYH8	0	genome.wustl.edu	37	17	10297588	10297588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	10297588	10297588	C	T	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	missense	c.5144	p.R1715H	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				126	0	0	68	26	27.6596
MYH2	0	genome.wustl.edu	37	17	10450814	10450814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	10450814	10450814	C	T	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.326	p.R109H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				257	0	0	157	67	29.9107
MYH3	0	genome.wustl.edu	37	17	10545555	10545555	+	Splice_Site	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	10545555	10545555	A	G	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	splice_site	c.1959+2	e15+2	1.000	-	-	-	no_errors	MYH3	HGNC	ENSG00000109063				28	0	0	5	4	44.4444
SCARF1	0	genome.wustl.edu	37	17	1542125	1542125	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	1542125	1542125	C	G	SNP	SCARF1	ENST00000263071	human	ensembl	74_37	-1	known	missense	c.1339	p.A447P	0.920	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF1	HGNC	ENSG00000074660				37	0	0	14	9	39.1304
TTC19	0	genome.wustl.edu	37	17	15909803	15909803	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	15909803	15909803	T	C	SNP	TTC19	ENST00000486880	human	ensembl	74_37	+1	known	silent	c.960	p.V320	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC19	HGNC	ENSG00000011295				115	0	0	52	18	25.7143
NCOR1	0	genome.wustl.edu	37	17	16024504	16024504	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	16024504	16024504	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	nonsense	c.1714	p.R572*	0.998	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				182	0	0	94	38	28.7879
ZNF624	0	genome.wustl.edu	37	17	16527079	16527079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	16527079	16527079	C	T	SNP	ZNF624	ENST00000311331	human	ensembl	74_37	-1	known	missense	c.1121	p.R374H	0.034	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566				122	0	0	67	20	22.9885
DRG2	0	genome.wustl.edu	37	17	17997255	17997255	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	17997255	17997255	G	A	SNP	DRG2	ENST00000225729	human	ensembl	74_37	+1	known	missense	c.193	p.V65M	1.000	pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	pfam_TGS,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,superfamily_TGS-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	DRG2	HGNC	ENSG00000108591				69	0	0	46	6	11.5385
MYO15A	0	genome.wustl.edu	37	17	18022483	18022483	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	18022483	18022483	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	silent	c.369	p.R123	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				27	0	0	10	7	41.1765
MYO15A	0	genome.wustl.edu	37	17	18034563	18034563	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	18034563	18034563	C	G	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.4049	p.A1350G	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				56	0	0	31	4	11.4286
FAM83G	0	genome.wustl.edu	37	17	18881325	18881325	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	18881325	18881325	C	T	SNP	FAM83G	ENST00000345041	human	ensembl	74_37	-1	known	missense	c.1654	p.A552T	0.000	NULL	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522				86	0	0	43	15	25.8621
SPECC1	0	genome.wustl.edu	37	17	20000031	20000031	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	20000031	20000031	C	T	SNP	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	missense	c.67	p.R23W	0.977	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				139	0	0	73	22	23.1579
LGALS9B	0	genome.wustl.edu	37	17	20361661	20361661	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	20361661	20361661	G	A	SNP	LGALS9B	ENST00000578481	human	ensembl	74_37	-1	known	nonsense	c.76	p.R26*	0.023	NULL	NULL	-	no_errors	LGALS9B	HGNC	ENSG00000170298				34	0	0	13	7	35
USP22	0	genome.wustl.edu	37	17	20921419	20921419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	20921419	20921419	G	A	SNP	USP22	ENST00000261497	human	ensembl	74_37	-1	known	missense	c.526	p.R176C	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP22	HGNC	ENSG00000124422				92	0	0	57	14	19.7183
MAP2K3	0	genome.wustl.edu	37	17	21206533	21206533	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	21206533	21206533	G	A	SNP	MAP2K3	ENST00000342679	human	ensembl	74_37	+1	known	silent	c.555	p.S185	0.727	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152				66	0	0	46	4	8
SMG6	0	genome.wustl.edu	37	17	2200609	2200609	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	2200609	2200609	C	T	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	silent	c.2079	p.Q693	1.000	pfam_EST1	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				104	0	0	43	19	30.6452
SMG6	0	genome.wustl.edu	37	17	2202996	2202996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	2202996	2202996	G	A	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	missense	c.1051	p.R351C	0.985	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				99	0	0	50	11	18.0328
KSR1	0	genome.wustl.edu	37	17	25950388	25950388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	25950388	25950388	C	T	SNP	KSR1	ENST00000578981	human	ensembl	74_37	+1	putative	missense	c.110	p.A37V	0.726	NULL	NULL	-	no_errors	KSR1	HGNC	ENSG00000141068				30	0	0	13	5	27.7778
SUPT6H	0	genome.wustl.edu	37	17	27002046	27002046	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	27002046	27002046	A	G	SNP	SUPT6H	ENST00000314616	human	ensembl	74_37	+1	known	missense	c.404	p.Y135C	0.997	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111				40	0	0	19	7	26.9231
TRAF4	0	genome.wustl.edu	37	17	27076100	27076100	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	27076100	27076100	T	C	SNP	TRAF4	ENST00000262395	human	ensembl	74_37	+1	known	silent	c.918	p.S306	0.993	superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF4	HGNC	ENSG00000076604				93	0	0	47	4	7.84314
TAOK1	0	genome.wustl.edu	37	17	27849338	27849338	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	27849338	27849338	C	T	SNP	TAOK1	ENST00000261716	human	ensembl	74_37	+1	known	missense	c.1949	p.A650V	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551				79	0	0	37	17	31.4815
ABHD15	0	genome.wustl.edu	37	17	27889799	27889799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	27889799	27889799	C	T	SNP	ABHD15	ENST00000307201	human	ensembl	74_37	-1	known	missense	c.1187	p.R396H	0.992	pirsf_AB-Hydro_YheT	pirsf_AB-Hydro_YheT	-	no_errors	ABHD15	HGNC	ENSG00000168792				45	0	0	25	9	26.4706
SLC6A4	0	genome.wustl.edu	37	17	28548814	28548814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	28548814	28548814	C	T	SNP	SLC6A4	ENST00000261707	human	ensembl	74_37	-1	known	missense	c.163	p.A55T	0.005	pfam_Na/ntran_symport_serotonin_N,prints_Na/ntran_symport_serotonin_N	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576				236	0	0	176	37	17.3709
SLFN5	0	genome.wustl.edu	37	17	33586029	33586029	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	33586029	33586029	G	A	SNP	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	missense	c.320	p.G107D	0.000	NULL	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750				117	0	0	62	22	26.1905
CCL15	0	genome.wustl.edu	37	17	34325931	34325931	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	34325931	34325931	A	C	SNP	CCL15	ENST00000354059	human	ensembl	74_37	-1	known	missense	c.107	p.L36R	0.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL15	HGNC	ENSG00000267596				63	0	0	34	14	29.1667
CCL18	0	genome.wustl.edu	37	17	34398397	34398397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	34398397	34398397	C	T	SNP	CCL18	ENST00000004921	human	ensembl	74_37	+1	known	missense	c.266	p.A89V	0.000	superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL18	HGNC	ENSG00000006074				67	0	0	24	11	31.4286
AATF	0	genome.wustl.edu	37	17	35346004	35346004	+	Silent	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	35346004	35346004	T	A	SNP	AATF	ENST00000225402	human	ensembl	74_37	+1	known	silent	c.1134	p.S378	1.000	NULL	pfam_AATF_C	-	no_errors	AATF	HGNC	ENSG00000108270				29	0	0	33	7	17.5
ACACA	0	genome.wustl.edu	37	17	35549074	35549074	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	35549074	35549074	A	C	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.4373	p.F1458C	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				86	0	0	52	14	21.2121
HNF1B	0	genome.wustl.edu	37	17	36059100	36059100	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	36059100	36059100	G	A	SNP	HNF1B	ENST00000225893	human	ensembl	74_37	-1	known	silent	c.1635	p.N545	1.000	pfam_HNF1b_C	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1B	HGNC	ENSG00000108753				69	0	0	37	17	31.4815
GPR179	0	genome.wustl.edu	37	17	36484063	36484063	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	36484063	36484063	T	C	SNP	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	missense	c.5389	p.R1797G	0.039	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888				152	0	0	113	8	6.61157
PCGF2	0	genome.wustl.edu	37	17	36895356	36895356	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	36895356	36895356	C	T	SNP	PCGF2	ENST00000360797	human	ensembl	74_37	-1	known	missense	c.281	p.R94Q	0.474	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF2	HGNC	ENSG00000056661				118	0	0	64	16	20
PIP4K2B	0	genome.wustl.edu	37	17	36927329	36927329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	36927329	36927329	C	T	SNP	PIP4K2B	ENST00000269554	human	ensembl	74_37	-1	known	missense	c.1004	p.R335Q	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2B	HGNC	ENSG00000141720				72	0	0	39	8	17.0213
MED1	0	genome.wustl.edu	37	17	37566787	37566787	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	37566787	37566787	G	A	SNP	MED1	ENST00000300651	human	ensembl	74_37	-1	known	missense	c.1687	p.P563S	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				135	0	0	75	43	36.4407
CDK12	0	genome.wustl.edu	37	17	37627211	37627211	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	37627211	37627211	A	G	SNP	CDK12	ENST00000447079	human	ensembl	74_37	+1	known	missense	c.1126	p.S376G	0.993	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK12	HGNC	ENSG00000167258				52	0	0	23	9	28.125
WIPF2	0	genome.wustl.edu	37	17	38430168	38430168	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	38430168	38430168	C	T	SNP	WIPF2	ENST00000323571	human	ensembl	74_37	+1	known	missense	c.1097	p.T366M	0.999	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF2	HGNC	ENSG00000171475				125	0	0	81	41	33.6066
TNS4	0	genome.wustl.edu	37	17	38645087	38645087	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	38645087	38645087	G	A	SNP	TNS4	ENST00000254051	human	ensembl	74_37	-1	known	nonsense	c.574	p.R192*	0.995	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTB/PI_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746				107	0	0	52	15	22.3881
KRT10	0	genome.wustl.edu	37	17	38975866	38975866	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	38975866	38975866	C	A	SNP	KRT10	ENST00000269576	human	ensembl	74_37	-1	known	nonsense	c.1276	p.E426*	1.000	pfam_IF,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT10	HGNC	ENSG00000186395				122	0	0	72	33	31.4286
KRTAP4-16P	0	genome.wustl.edu	37	17	39258370	39258370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	39258370	39258370	G	A	SNP	KRTAP4-16P	ENST00000440582	human	ensembl	74_37	-1	putative	missense	c.92	p.T31I	0.047	NULL	NULL	-	no_errors	KRTAP4-16P	HGNC	ENSG00000241241				57	0	0	31	8	20.5128
KRTAP4-12	0	genome.wustl.edu	37	17	39279872	39279872	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	39279872	39279872	C	T	SNP	KRTAP4-12	ENST00000394014	human	ensembl	74_37	-1	known	missense	c.503	p.R168H	1.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-12	HGNC	ENSG00000213416				34	0	0	10	3	23.0769
GHDC	0	genome.wustl.edu	37	17	40344470	40344470	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	40344470	40344470	G	A	SNP	GHDC	ENST00000301671	human	ensembl	74_37	-1	known	silent	c.678	p.A226	0.063	pfam_GH3	pfam_GH3	-	no_errors	GHDC	HGNC	ENSG00000167925				175	0	0	88	39	30.7087
TUBG1	0	genome.wustl.edu	37	17	40766006	40766006	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	40766006	40766006	C	T	SNP	TUBG1	ENST00000251413	human	ensembl	74_37	+1	known	missense	c.833	p.T278M	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBG1	HGNC	ENSG00000131462				246	0	0	126	55	30.3867
EZH1	0	genome.wustl.edu	37	17	40854922	40854922	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	40854922	40854922	G	A	SNP	EZH1	ENST00000428826	human	ensembl	74_37	-1	known	missense	c.2156	p.A719V	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH1	HGNC	ENSG00000108799				199	1	0.5	120	37	23.5669
WNK4	0	genome.wustl.edu	37	17	40939342	40939342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	40939342	40939342	G	A	SNP	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	missense	c.1523	p.R508H	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				72	0	0	34	10	22.7273
BECN1	0	genome.wustl.edu	37	17	40965966	40965966	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	40965966	40965966	C	G	SNP	BECN1	ENST00000361523	human	ensembl	74_37	-1	known	missense	c.1041	p.K347N	1.000	pfam_Beclin_fam,superfamily_Translin	pfam_Beclin_fam,superfamily_Translin	-	no_errors	BECN1	HGNC	ENSG00000126581				72	0	0	32	13	28.8889
RUNDC1	0	genome.wustl.edu	37	17	41142424	41142424	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	41142424	41142424	G	A	SNP	RUNDC1	ENST00000361677	human	ensembl	74_37	+1	known	missense	c.947	p.S316N	0.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC1	HGNC	ENSG00000198863				72	0	0	45	20	30.7692
UBTF	0	genome.wustl.edu	37	17	42284915	42284915	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	42284915	42284915	T	A	SNP	UBTF	ENST00000302904	human	ensembl	74_37	-1	known	missense	c.2076	p.E692D	0.964	superfamily_ARM-type_fold	pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_ARM-type_fold,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	UBTF	HGNC	ENSG00000108312				39	0	0	22	13	37.1429
HEXIM1	0	genome.wustl.edu	37	17	43227260	43227260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	43227260	43227260	G	A	SNP	HEXIM1	ENST00000332499	human	ensembl	74_37	+1	known	missense	c.703	p.D235N	1.000	NULL	NULL	-	no_errors	HEXIM1	HGNC	ENSG00000186834				71	0	0	27	14	34.1463
B4GALNT2	0	genome.wustl.edu	37	17	47210502	47210502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	47210502	47210502	G	A	SNP	B4GALNT2	ENST00000300404	human	ensembl	74_37	+1	known	missense	c.115	p.G39R	0.000	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080				12	0	0	1	4	80
NGFR	0	genome.wustl.edu	37	17	47590364	47590364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	47590364	47590364	C	T	SNP	NGFR	ENST00000172229	human	ensembl	74_37	+1	known	missense	c.1277	p.P426L	0.989	NULL	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_16	-	no_errors	NGFR	HGNC	ENSG00000064300				22	0	0	7	6	46.1538
RSAD1	0	genome.wustl.edu	37	17	48560736	48560736	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	48560736	48560736	G	T	SNP	RSAD1	ENST00000258955	human	ensembl	74_37	+1	known	missense	c.940	p.G314C	0.000	pfam_HemN_C_dom,tigrfam_Coprogen_oxidase_HemN-rel	pfam_HemN_C_dom,pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_Coprogen_oxidase_HemN-rel	-	no_errors	RSAD1	HGNC	ENSG00000136444				36	0	0	20	10	33.3333
SPATA20	0	genome.wustl.edu	37	17	48628888	48628888	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	48628888	48628888	C	T	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	silent	c.1593	p.G531	0.994	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				110	0	0	65	20	23.5294
KIF2B	0	genome.wustl.edu	37	17	51901779	51901779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	51901779	51901779	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.1385	p.R462Q	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				50	0	0	24	9	27.2727
RABEP1	0	genome.wustl.edu	37	17	5250183	5250183	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	5250183	5250183	G	A	SNP	RABEP1	ENST00000262477	human	ensembl	74_37	+1	known	silent	c.747	p.Q249	1.000	prints_Rabaptin	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725				43	0	0	19	5	20.8333
STXBP4	0	genome.wustl.edu	37	17	53158486	53158486	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	53158486	53158486	G	A	SNP	STXBP4	ENST00000376352	human	ensembl	74_37	+1	known	silent	c.1431	p.T477	0.000	NULL	pfam_WW_dom,pfam_PDZ,superfamily_PDZ,superfamily_WW_dom,smart_PDZ,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom	-	no_errors	STXBP4	HGNC	ENSG00000166263				39	0	0	22	12	35.2941
OR4D2	0	genome.wustl.edu	37	17	56247177	56247177	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	56247177	56247177	A	G	SNP	OR4D2	ENST00000545221	human	ensembl	74_37	+1	known	missense	c.161	p.Q54R	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D2	HGNC	ENSG00000255713				164	0	0	55	39	41.4894
C17orf47	0	genome.wustl.edu	37	17	56620148	56620148	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	56620148	56620148	C	A	SNP	C17orf47	ENST00000321691	human	ensembl	74_37	-1	known	missense	c.1400	p.S467I	0.003	NULL	NULL	-	no_errors	C17orf47	HGNC	ENSG00000181013				237	0	0	60	50	45.4545
SKA2	0	genome.wustl.edu	37	17	57189647	57189647	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	57189647	57189647	T	C	SNP	SKA2	ENST00000330137	human	ensembl	74_37	-1	known	silent	c.357	p.P119	0.208	NULL	NULL	-	no_errors	SKA2	HGNC	ENSG00000182628				46	0	0	28	8	22.2222
PTRH2	0	genome.wustl.edu	37	17	57775153	57775153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	57775153	57775153	C	T	SNP	PTRH2	ENST00000393038	human	ensembl	74_37	-1	known	missense	c.187	p.G63R	1.000	superfamily_Pep_tRNA_hydro_II_dom	pfam_PTH2,superfamily_Pep_tRNA_hydro_II_dom,tigrfam_PTH2	-	no_errors	PTRH2	HGNC	ENSG00000141378				84	0	0	45	22	32.8358
TBX2	0	genome.wustl.edu	37	17	59482855	59482855	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	59482855	59482855	G	A	SNP	TBX2	ENST00000240328	human	ensembl	74_37	+1	novel	silent	c.1344	p.A448	1.000	NULL	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX2	HGNC	ENSG00000121068				9	0	0	5	3	37.5
MED13	0	genome.wustl.edu	37	17	60072703	60072703	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	60072703	60072703	G	T	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	missense	c.1991	p.P664H	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				70	0	0	27	4	12.9032
ACE	0	genome.wustl.edu	37	17	61560033	61560033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	61560033	61560033	G	A	SNP	ACE	ENST00000290866	human	ensembl	74_37	+1	known	missense	c.1325	p.R442H	0.000	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640				101	0	0	48	15	23.8095
STRADA	0	genome.wustl.edu	37	17	61788193	61788193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	61788193	61788193	C	T	SNP	STRADA	ENST00000336174	human	ensembl	74_37	-1	known	missense	c.352	p.E118K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STRADA	HGNC	ENSG00000266173				48	0	0	22	11	33.3333
FTSJ3	0	genome.wustl.edu	37	17	61897668	61897668	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	61897668	61897668	T	C	SNP	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	missense	c.2203	p.N735D	1.000	pfam_rRNA_MeTfrase_Spb1_C	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592				220	0	0	119	39	24.6835
SCN4A	0	genome.wustl.edu	37	17	62024461	62024461	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	62024461	62024461	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.3385	p.R1129W	0.985	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				87	0	0	28	15	34.8837
DDX5	0	genome.wustl.edu	37	17	62496890	62496890	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	62496890	62496890	A	G	SNP	DDX5	ENST00000225792	human	ensembl	74_37	-1	known	silent	c.1218	p.D406	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX5	HGNC	ENSG00000108654				67	0	0	55	3	5.17241
AIPL1	0	genome.wustl.edu	37	17	6331701	6331701	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	6331701	6331701	G	A	SNP	AIPL1	ENST00000381129	human	ensembl	74_37	-1	known	silent	c.402	p.Y134	0.999	NULL	pfam_PPIase_FKBP_dom,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	AIPL1	HGNC	ENSG00000129221				83	0	0	51	8	13.5593
PITPNM3	0	genome.wustl.edu	37	17	6380417	6380417	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	6380417	6380417	C	T	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	silent	c.1017	p.P339	0.007	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				41	0	0	23	5	17.8571
FAM57A	0	genome.wustl.edu	37	17	644552	644552	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	644552	644552	G	A	SNP	FAM57A	ENST00000308278	human	ensembl	74_37	+1	known	silent	c.516	p.Q172	1.000	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	FAM57A	HGNC	ENSG00000167695				82	0	0	45	17	27.4194
KPNA2	0	genome.wustl.edu	37	17	66038247	66038247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	66038247	66038247	C	T	SNP	KPNA2	ENST00000330459	human	ensembl	74_37	+1	known	missense	c.349	p.R117W	0.537	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA2	HGNC	ENSG00000182481				83	0	0	48	24	33.3333
ABCA6	0	genome.wustl.edu	37	17	67075398	67075398	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	67075398	67075398	T	C	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	missense	c.4705	p.N1569D	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				56	0	0	31	13	29.5455
KCNJ16	0	genome.wustl.edu	37	17	68129031	68129031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	68129031	68129031	G	A	SNP	KCNJ16	ENST00000283936	human	ensembl	74_37	+1	known	missense	c.803	p.R268H	0.999	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ16	HGNC	ENSG00000153822				149	0	0	100	32	24.2424
RNMTL1	0	genome.wustl.edu	37	17	686479	686479	+	Silent	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	686479	686479	C	A	SNP	RNMTL1	ENST00000304478	human	ensembl	74_37	+1	known	silent	c.471	p.V157	0.000	pfam_SpoU_subst-bd,smart_SpoU_subst-bd	pfam_SpoU_MeTrfase,pfam_SpoU_subst-bd,smart_SpoU_subst-bd	-	no_errors	RNMTL1	HGNC	ENSG00000171861				58	0	0	27	11	28.9474
DVL2	0	genome.wustl.edu	37	17	7133463	7133463	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	7133463	7133463	G	T	SNP	DVL2	ENST00000005340	human	ensembl	74_37	-1	known	missense	c.422	p.S141Y	0.986	NULL	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_2,prints_Dishevelled_fam	-	no_errors	DVL2	HGNC	ENSG00000004975				72	0	0	44	16	26.6667
C17orf74	0	genome.wustl.edu	37	17	7329696	7329696	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	7329696	7329696	G	A	SNP	C17orf74	ENST00000333870	human	ensembl	74_37	+1	known	missense	c.386	p.R129H	0.000	NULL	NULL	-	no_errors	C17orf74	HGNC	ENSG00000184560				100	0	0	38	29	43.2836
C17orf74	0	genome.wustl.edu	37	17	7329702	7329702	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	7329702	7329702	A	G	SNP	C17orf74	ENST00000333870	human	ensembl	74_37	+1	known	missense	c.392	p.H131R	0.000	NULL	NULL	-	no_errors	C17orf74	HGNC	ENSG00000184560				94	0	0	40	21	34.4262
KIAA0195	0	genome.wustl.edu	37	17	73484941	73484941	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	73484941	73484941	G	A	SNP	KIAA0195	ENST00000314256	human	ensembl	74_37	+1	known	silent	c.714	p.Q238	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728				161	0	0	110	9	7.56303
TSEN54	0	genome.wustl.edu	37	17	73513713	73513713	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	73513713	73513713	A	G	SNP	TSEN54	ENST00000333213	human	ensembl	74_37	+1	known	missense	c.445	p.T149A	0.010	NULL	NULL	-	no_errors	TSEN54	HGNC	ENSG00000182173				249	0	0	201	15	6.94444
ITGB4	0	genome.wustl.edu	37	17	73733713	73733713	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	73733713	73733713	T	C	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	silent	c.2208	p.C736	0.999	pirsf_Integrin_bsu-4	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				35	0	0	25	3	10.7143
EVPL	0	genome.wustl.edu	37	17	74003238	74003238	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	74003238	74003238	C	A	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	missense	c.6048	p.E2016D	0.993	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				68	0	0	32	12	27.2727
POLR2A	0	genome.wustl.edu	37	17	7402445	7402445	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	7402445	7402445	C	T	SNP	POLR2A	ENST00000322644	human	ensembl	74_37	+1	known	missense	c.1423	p.R475C	1.000	pfam_RNA_pol_asu,smart_RNA_pol_N	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222				145	0	0	86	43	33.3333
GALR2	0	genome.wustl.edu	37	17	74073381	74073381	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	74073381	74073381	A	G	SNP	GALR2	ENST00000329003	human	ensembl	74_37	+1	known	missense	c.1033	p.M345V	0.807	prints_GAL2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_GAL2_rcpt	-	no_errors	GALR2	HGNC	ENSG00000182687				11	0	0	9	5	35.7143
SENP3	0	genome.wustl.edu	37	17	7469041	7469041	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	7469041	7469041	A	G	SNP	SENP3	ENST00000429205	human	ensembl	74_37	+1	known	missense	c.1223	p.N408S	1.000	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP3	HGNC	ENSG00000161956				54	0	0	43	3	6.52174
LGALS3BP	0	genome.wustl.edu	37	17	76968444	76968444	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	76968444	76968444	G	T	SNP	LGALS3BP	ENST00000262776	human	ensembl	74_37	-1	known	silent	c.972	p.A324	0.078	pfam_BACK,smart_BACK	pfam_SRCR,pfam_BACK,superfamily_Srcr_rcpt-rel,superfamily_BTB/POZ_fold,smart_Srcr_rcpt-rel,smart_BACK,pfscan_BTB/POZ-like,pfscan_SRCR,prints_SRCR	-	no_errors	LGALS3BP	HGNC	ENSG00000108679				56	0	0	26	17	39.5349
CHD3	0	genome.wustl.edu	37	17	7797559	7797559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	7797559	7797559	C	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.1051	p.R351W	0.999	superfamily_Znf_FYVE_PHD	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				37	0	0	19	7	26.9231
GUCY2D	0	genome.wustl.edu	37	17	7909952	7909952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	7909952	7909952	G	A	SNP	GUCY2D	ENST00000254854	human	ensembl	74_37	+1	known	missense	c.1298	p.R433Q	0.007	superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518				36	0	0	17	12	41.3793
AATK	0	genome.wustl.edu	37	17	79108237	79108237	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	79108237	79108237	G	A	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	silent	c.120	p.S40	0.959	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409				49	0	0	30	7	18.9189
SLC38A10	0	genome.wustl.edu	37	17	79234093	79234093	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	79234093	79234093	G	A	SNP	SLC38A10	ENST00000374759	human	ensembl	74_37	-1	known	silent	c.1233	p.G411	0.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637				14	0	0	7	3	30
C17orf70	0	genome.wustl.edu	37	17	79514275	79514275	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	79514275	79514275	G	A	SNP	C17orf70	ENST00000327787	human	ensembl	74_37	-1	known	silent	c.1833	p.G611	0.000	NULL	NULL	-	no_errors	C17orf70	HGNC	ENSG00000185504				93	0	0	40	21	34.4262
AURKB	0	genome.wustl.edu	37	17	8108286	8108286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	8108286	8108286	G	A	SNP	AURKB	ENST00000585124	human	ensembl	74_37	-1	known	missense	c.938	p.S313L	0.310	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AURKB	HGNC	ENSG00000178999				58	0	0	16	16	50
KRBA2	0	genome.wustl.edu	37	17	8273299	8273299	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	8273299	8273299	C	T	SNP	KRBA2	ENST00000331336	human	ensembl	74_37	-1	known	missense	c.632	p.R211H	0.715	NULL	pfam_Krueppel-associated_box,superfamily_RNaseH-like_dom,superfamily_Krueppel-associated_box,pfscan_Integrase_cat-core	-	no_errors	KRBA2	HGNC	ENSG00000184619				122	1	0.813008	99	6	5.71429
WDR16	0	genome.wustl.edu	37	17	9536336	9536336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	9536336	9536336	G	A	SNP	WDR16	ENST00000299764	human	ensembl	74_37	+1	known	missense	c.1336	p.G446S	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR16	HGNC	ENSG00000166596				65	0	0	31	16	34.0426
GNAL	0	genome.wustl.edu	37	18	11876645	11876645	+	Silent	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	11876645	11876645	C	A	SNP	GNAL	ENST00000334049	human	ensembl	74_37	+1	known	silent	c.1188	p.P396	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_S	-	no_errors	GNAL	HGNC	ENSG00000141404				100	0	0	40	20	33.3333
SPIRE1	0	genome.wustl.edu	37	18	12506563	12506563	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	12506563	12506563	G	A	SNP	SPIRE1	ENST00000409402	human	ensembl	74_37	-1	known	silent	c.885	p.N295	1.000	NULL	superfamily_Znf_FYVE_PHD,smart_KIND	-	no_errors	SPIRE1	HGNC	ENSG00000134278				180	0	0	93	38	29.0076
SMCHD1	0	genome.wustl.edu	37	18	2775770	2775770	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	2775770	2775770	G	A	SNP	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	silent	c.5214	p.A1738	0.988	pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596				58	0	0	41	26	38.806
DSC2	0	genome.wustl.edu	37	18	28666590	28666590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	28666590	28666590	C	T	SNP	DSC2	ENST00000280904	human	ensembl	74_37	-1	known	missense	c.891	p.M297I	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755				182	0	0	127	47	27.0115
TRAPPC8	0	genome.wustl.edu	37	18	29488794	29488794	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	29488794	29488794	G	A	SNP	TRAPPC8	ENST00000283351	human	ensembl	74_37	-1	known	nonsense	c.1045	p.R349*	1.000	NULL	NULL	-	no_errors	TRAPPC8	HGNC	ENSG00000153339				72	0	0	29	25	46.2963
NOL4	0	genome.wustl.edu	37	18	31803175	31803175	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	31803175	31803175	A	G	SNP	NOL4	ENST00000261592	human	ensembl	74_37	-1	known	missense	c.43	p.C15R	1.000	NULL	NULL	-	no_errors	NOL4	HGNC	ENSG00000101746				98	0	0	48	14	22.5806
SLC14A2	0	genome.wustl.edu	37	18	43224100	43224100	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	43224100	43224100	C	T	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	silent	c.1326	p.S442	0.002	NULL	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				154	0	0	78	37	32.1739
SIGLEC15	0	genome.wustl.edu	37	18	43418949	43418949	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	43418949	43418949	T	C	SNP	SIGLEC15	ENST00000389474	human	ensembl	74_37	+1	known	missense	c.763	p.F255L	0.999	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SIGLEC15	HGNC	ENSG00000197046				20	0	0	9	3	25
EPG5	0	genome.wustl.edu	37	18	43469907	43469907	+	Splice_Site	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	43469907	43469907	T	C	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	splice_site	c.4810-2	e28-2	1.000	-	-	-	no_errors	EPG5	HGNC	ENSG00000152223				33	0	0	21	3	12.5
TCEB3B	0	genome.wustl.edu	37	18	44560047	44560047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	44560047	44560047	C	T	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	missense	c.1589	p.R530H	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				125	0	0	65	33	33.6735
HDHD2	0	genome.wustl.edu	37	18	44641701	44641701	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	44641701	44641701	T	C	SNP	HDHD2	ENST00000300605	human	ensembl	74_37	-1	known	silent	c.414	p.A138	0.103	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA	-	no_errors	HDHD2	HGNC	ENSG00000167220				48	0	0	31	7	18.4211
SMAD2	0	genome.wustl.edu	37	18	45372100	45372100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	45372100	45372100	C	T	SNP	SMAD2	ENST00000262160	human	ensembl	74_37	-1	known	missense	c.1069	p.V357M	1.000	pfam_SMAD_dom_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387				95	0	0	62	18	22.5
ZBTB7C	0	genome.wustl.edu	37	18	45566686	45566686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	45566686	45566686	C	T	SNP	ZBTB7C	ENST00000332053	human	ensembl	74_37	-1	known	missense	c.793	p.G265S	0.767	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828				72	0	0	20	12	37.5
DCC	0	genome.wustl.edu	37	18	50985626	50985626	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	50985626	50985626	C	T	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	silent	c.3417	p.G1139	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				55	0	0	26	13	33.3333
EPB41L3	0	genome.wustl.edu	37	18	5419926	5419926	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	5419926	5419926	T	C	SNP	EPB41L3	ENST00000544123	human	ensembl	74_37	-1	known	silent	c.1344	p.S448	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41L3	HGNC	ENSG00000082397				62	0	0	31	12	27.907
CDH19	0	genome.wustl.edu	37	18	64218423	64218423	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	64218423	64218423	T	C	SNP	CDH19	ENST00000262150	human	ensembl	74_37	-1	known	missense	c.683	p.D228G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991				111	0	0	78	7	8.23529
ZNF407	0	genome.wustl.edu	37	18	72775812	72775812	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	72775812	72775812	G	T	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.6135	p.Q2045H	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				57	0	0	31	7	18.4211
SALL3	0	genome.wustl.edu	37	18	76753092	76753092	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	76753092	76753092	C	T	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	silent	c.1101	p.S367	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				18	0	0	5	4	44.4444
SALL3	0	genome.wustl.edu	37	18	76754571	76754571	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	76754571	76754571	C	T	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	silent	c.2580	p.T860	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				128	0	0	55	21	27.6316
CTDP1	0	genome.wustl.edu	37	18	77475256	77475256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	77475256	77475256	G	A	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	missense	c.1796	p.R599H	0.758	NULL	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069				16	0	0	8	7	46.6667
ANKRD12	0	genome.wustl.edu	37	18	9255253	9255253	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	9255253	9255253	A	G	SNP	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	missense	c.1988	p.E663G	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				37	0	0	20	8	28.5714
EIF3G	0	genome.wustl.edu	37	19	10226201	10226201	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	10226201	10226201	A	G	SNP	EIF3G	ENST00000253108	human	ensembl	74_37	-1	known	missense	c.901	p.S301P	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3_g,pfscan_RRM_dom	pfam_eIF3g_N,pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3_g,pfscan_RRM_dom	-	no_errors	EIF3G	HGNC	ENSG00000130811				93	0	0	56	12	17.6471
PDE4A	0	genome.wustl.edu	37	19	10531499	10531499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	10531499	10531499	G	A	SNP	PDE4A	ENST00000352831	human	ensembl	74_37	+1	known	missense	c.59	p.R20Q	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4A	HGNC	ENSG00000065989				23	0	0	5	4	44.4444
KEAP1	0	genome.wustl.edu	37	19	10610652	10610652	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	10610652	10610652	G	A	SNP	KEAP1	ENST00000171111	human	ensembl	74_37	-1	known	nonsense	c.58	p.Q20*	0.007	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999				60	0	0	36	3	7.69231
SMARCA4	0	genome.wustl.edu	37	19	11107211	11107211	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	11107211	11107211	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	silent	c.1803	p.P601	0.023	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				113	0	0	51	21	29.1667
ELAVL3	0	genome.wustl.edu	37	19	11569369	11569369	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	11569369	11569369	C	T	SNP	ELAVL3	ENST00000359227	human	ensembl	74_37	-1	known	missense	c.391	p.G131R	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361				156	1	0.636943	102	41	28.6713
ZNF653	0	genome.wustl.edu	37	19	11597866	11597866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	11597866	11597866	C	T	SNP	ZNF653	ENST00000293771	human	ensembl	74_37	-1	known	missense	c.1279	p.G427R	0.544	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF653	HGNC	ENSG00000161914				77	0	0	57	5	8.06452
ZNF700	0	genome.wustl.edu	37	19	12060023	12060023	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	12060023	12060023	G	A	SNP	ZNF700	ENST00000254321	human	ensembl	74_37	+1	known	missense	c.1184	p.C395Y	0.980	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757				63	0	0	26	11	29.7297
ZNF799	0	genome.wustl.edu	37	19	12501767	12501767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	12501767	12501767	C	T	SNP	ZNF799	ENST00000430385	human	ensembl	74_37	-1	known	missense	c.1445	p.G482E	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466				106	0	0	36	13	26.5306
FBXW9	0	genome.wustl.edu	37	19	12800856	12800856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	12800856	12800856	G	A	SNP	FBXW9	ENST00000380339	human	ensembl	74_37	-1	known	missense	c.1042	p.R348W	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW9	HGNC	ENSG00000132004				133	1	0.746269	70	23	24.7312
MAST1	0	genome.wustl.edu	37	19	12985485	12985485	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	12985485	12985485	C	A	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	missense	c.4514	p.P1505Q	0.967	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				44	0	0	20	11	35.4839
TRMT1	0	genome.wustl.edu	37	19	13226178	13226178	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	13226178	13226178	A	C	SNP	TRMT1	ENST00000357720	human	ensembl	74_37	-1	known	missense	c.556	p.S186A	1.000	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,tigrfam_TRM1	pfam_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907				85	0	0	55	17	23.6111
IL27RA	0	genome.wustl.edu	37	19	14157020	14157020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	14157020	14157020	C	T	SNP	IL27RA	ENST00000263379	human	ensembl	74_37	+1	known	missense	c.823	p.R275C	0.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998				238	0	0	119	51	30
LPHN1	0	genome.wustl.edu	37	19	14261714	14261714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	14261714	14261714	C	T	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.4396	p.G1466R	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				36	0	0	28	4	12.5
LPHN1	0	genome.wustl.edu	37	19	14266920	14266920	+	Splice_Site	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	14266920	14266920	A	G	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	splice_site	c.3140+2	e17+2	1.000	-	-	-	no_errors	LPHN1	HGNC	ENSG00000072071				49	0	0	19	6	24
LPHN1	0	genome.wustl.edu	37	19	14273846	14273846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	14273846	14273846	C	T	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.782	p.R261H	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				52	0	0	30	6	16.6667
SLC1A6	0	genome.wustl.edu	37	19	15065111	15065111	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	15065111	15065111	G	A	SNP	SLC1A6	ENST00000221742	human	ensembl	74_37	-1	known	silent	c.1200	p.C400	1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143				85	0	0	49	17	25.7576
NOTCH3	0	genome.wustl.edu	37	19	15271758	15271758	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	15271758	15271758	G	A	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	silent	c.6681	p.H2227	0.002	pirsf_Notch,pfam_DUF3454_notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				14	0	0	4	2	33.3333
CYP4F12	0	genome.wustl.edu	37	19	15791216	15791216	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	15791216	15791216	C	T	SNP	CYP4F12	ENST00000547332	human	ensembl	74_37	+1	known	missense	c.302	p.A101V	0.996	NULL	NULL	-	no_errors	CYP4F12	HGNC	ENSG00000186204				37	0	0	10	6	37.5
OR10H5	0	genome.wustl.edu	37	19	15905398	15905398	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	15905398	15905398	C	T	SNP	OR10H5	ENST00000308940	human	ensembl	74_37	+1	known	silent	c.540	p.H180	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H5	HGNC	ENSG00000172519				89	0	0	46	3	6.12245
MYO9B	0	genome.wustl.edu	37	19	17213232	17213232	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	17213232	17213232	C	T	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	silent	c.705	p.I235	0.984	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				75	0	0	35	23	39.6552
ABHD8	0	genome.wustl.edu	37	19	17412369	17412369	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	17412369	17412369	G	A	SNP	ABHD8	ENST00000247706	human	ensembl	74_37	-1	known	silent	c.57	p.N19	0.931	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD8	HGNC	ENSG00000127220				50	0	0	29	10	25.641
BST2	0	genome.wustl.edu	37	19	17516268	17516268	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	17516268	17516268	C	T	SNP	BST2	ENST00000252593	human	ensembl	74_37	-1	known	silent	c.117	p.V39	0.000	NULL	superfamily_Prefoldin	-	no_errors	BST2	HGNC	ENSG00000130303				77	0	0	50	13	20.6349
MAP1S	0	genome.wustl.edu	37	19	17844195	17844195	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	17844195	17844195	C	T	SNP	MAP1S	ENST00000324096	human	ensembl	74_37	+1	known	silent	c.2982	p.D994	0.718	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479				23	0	0	13	4	23.5294
JAK3	0	genome.wustl.edu	37	19	17937670	17937670	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	17937670	17937670	G	T	SNP	JAK3	ENST00000458235	human	ensembl	74_37	-1	known	missense	c.3257	p.P1086Q	0.947	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639				118	0	0	54	15	21.7391
KIAA1683	0	genome.wustl.edu	37	19	18377082	18377082	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	18377082	18377082	A	G	SNP	KIAA1683	ENST00000392413	human	ensembl	74_37	-1	known	missense	c.1268	p.I423T	0.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518				120	0	0	50	14	21.875
COMP	0	genome.wustl.edu	37	19	18898336	18898336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	18898336	18898336	G	A	SNP	COMP	ENST00000222271	human	ensembl	74_37	-1	known	missense	c.1099	p.R367W	0.067	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd_dom,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664				222	0	0	100	50	33.3333
NCAN	0	genome.wustl.edu	37	19	19338599	19338599	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	19338599	19338599	T	C	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.2170	p.S724P	0.001	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				101	0	0	59	28	32.1839
HAPLN4	0	genome.wustl.edu	37	19	19369374	19369374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	19369374	19369374	C	T	SNP	HAPLN4	ENST00000291481	human	ensembl	74_37	-1	known	missense	c.775	p.E259K	0.002	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN4	HGNC	ENSG00000187664				78	0	0	53	18	25.3521
GATAD2A	0	genome.wustl.edu	37	19	19606902	19606902	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	19606902	19606902	G	A	SNP	GATAD2A	ENST00000358713	human	ensembl	74_37	+1	known	silent	c.798	p.P266	0.130	NULL	pfam_Znf_GATA,pfscan_Znf_GATA	-	no_errors	GATAD2A	HGNC	ENSG00000167491				44	0	0	33	9	21.4286
TSSK6	0	genome.wustl.edu	37	19	19626062	19626062	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	19626062	19626062	G	A	SNP	TSSK6	ENST00000360913	human	ensembl	74_37	-1	known	nonsense	c.175	p.R59*	0.714	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TSSK6	HGNC	ENSG00000178093				63	0	0	25	14	35.8974
PBX4	0	genome.wustl.edu	37	19	19681519	19681519	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	19681519	19681519	G	A	SNP	PBX4	ENST00000251203	human	ensembl	74_37	-1	known	missense	c.317	p.A106V	0.899	pfam_PBX	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX4	HGNC	ENSG00000105717				73	0	0	36	13	26.5306
ZNF737	0	genome.wustl.edu	37	19	20727685	20727685	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	20727685	20727685	T	C	SNP	ZNF737	ENST00000427401	human	ensembl	74_37	-1	known	missense	c.1324	p.T442A	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440				57	0	0	37	10	21.2766
ZNF737	0	genome.wustl.edu	37	19	20728103	20728103	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	20728103	20728103	C	T	SNP	ZNF737	ENST00000427401	human	ensembl	74_37	-1	known	silent	c.906	p.A302	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440				55	0	0	27	13	32.5
ZNF430	0	genome.wustl.edu	37	19	21239589	21239589	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	21239589	21239589	A	G	SNP	ZNF430	ENST00000261560	human	ensembl	74_37	+1	known	missense	c.475	p.K159E	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF430	HGNC	ENSG00000118620				42	0	0	29	8	21.6216
LINGO3	0	genome.wustl.edu	37	19	2291560	2291560	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	2291560	2291560	G	A	SNP	LINGO3	ENST00000404279	human	ensembl	74_37	-1	known	silent	c.216	p.G72	0.786	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO3	HGNC	ENSG00000220008				22	0	0	6	5	45.4545
ZNF675	0	genome.wustl.edu	37	19	23836085	23836085	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	23836085	23836085	G	A	SNP	ZNF675	ENST00000359788	human	ensembl	74_37	-1	known	silent	c.1650	p.N550	0.097	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372				51	0	0	42	3	6.66667
TLE2	0	genome.wustl.edu	37	19	3009702	3009702	+	Splice_Site	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	3009702	3009702	T	C	SNP	TLE2	ENST00000262953	human	ensembl	74_37	-1	known	splice_site	c.1013-2	e13-2	0.969	-	-	-	no_errors	TLE2	HGNC	ENSG00000065717				18	0	0	2	4	66.6667
ZNF536	0	genome.wustl.edu	37	19	31039638	31039638	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	31039638	31039638	A	G	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.3112	p.T1038A	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				92	0	0	45	11	19.6429
SLC7A10	0	genome.wustl.edu	37	19	33716477	33716477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	33716477	33716477	C	T	SNP	SLC7A10	ENST00000253188	human	ensembl	74_37	-1	known	missense	c.133	p.A45T	1.000	pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A10	HGNC	ENSG00000130876				40	0	0	15	9	37.5
TBXA2R	0	genome.wustl.edu	37	19	3600363	3600363	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	3600363	3600363	G	A	SNP	TBXA2R	ENST00000411851	human	ensembl	74_37	-1	known	silent	c.270	p.A90	0.019	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thbox_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	TBXA2R	HGNC	ENSG00000006638				52	0	0	25	9	26.4706
SBSN	0	genome.wustl.edu	37	19	36018974	36018974	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	36018974	36018974	G	A	SNP	SBSN	ENST00000518157	human	ensembl	74_37	-1	known	silent	c.210	p.N70	0.887	NULL	NULL	-	no_errors	SBSN	HGNC	ENSG00000189001				183	0	0	108	37	25.5172
KMT2B	0	genome.wustl.edu	37	19	36212356	36212356	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	36212356	36212356	A	G	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.2107	p.S703G	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				46	0	0	13	2	13.3333
IGFLR1	0	genome.wustl.edu	37	19	36230389	36230389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	36230389	36230389	G	A	SNP	IGFLR1	ENST00000246532	human	ensembl	74_37	-1	known	missense	c.860	p.A287V	0.682	superfamily_DEATH-like_dom	superfamily_DEATH-like_dom	-	no_errors	IGFLR1	HGNC	ENSG00000126246				68	0	0	38	13	25.4902
CLIP3	0	genome.wustl.edu	37	19	36515513	36515513	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	36515513	36515513	C	A	SNP	CLIP3	ENST00000360535	human	ensembl	74_37	-1	known	missense	c.703	p.A235S	0.998	NULL	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP3	HGNC	ENSG00000105270				52	0	0	28	4	12.5
CLIP3	0	genome.wustl.edu	37	19	36518142	36518142	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	36518142	36518142	C	T	SNP	CLIP3	ENST00000360535	human	ensembl	74_37	-1	known	silent	c.198	p.A66	0.933	NULL	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP3	HGNC	ENSG00000105270				58	0	0	37	15	28.8462
WDR62	0	genome.wustl.edu	37	19	36594454	36594454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	36594454	36594454	G	A	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	missense	c.3724	p.V1242M	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				51	0	0	31	5	13.8889
PIP5K1C	0	genome.wustl.edu	37	19	3667320	3667320	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	3667320	3667320	C	A	SNP	PIP5K1C	ENST00000537021	human	ensembl	74_37	-1	known	missense	c.126	p.E42D	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111				37	0	0	12	2	14.2857
ZNF565	0	genome.wustl.edu	37	19	36673976	36673976	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	36673976	36673976	G	A	SNP	ZNF565	ENST00000304116	human	ensembl	74_37	-1	known	missense	c.892	p.R298W	0.979	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF565	HGNC	ENSG00000196357				86	0	0	49	21	30
ZNF146	0	genome.wustl.edu	37	19	36727929	36727929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	36727929	36727929	G	A	SNP	ZNF146	ENST00000443387	human	ensembl	74_37	+1	known	missense	c.587	p.R196Q	0.863	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF146	HGNC	ENSG00000167635				140	0	0	70	27	27.8351
ZFR2	0	genome.wustl.edu	37	19	3823259	3823259	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	3823259	3823259	C	T	SNP	ZFR2	ENST00000262961	human	ensembl	74_37	-1	known	silent	c.1356	p.P452	0.297	NULL	pfam_DZF,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR2	HGNC	ENSG00000105278				169	0	0	82	35	29.9145
RYR1	0	genome.wustl.edu	37	19	38934390	38934390	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	38934390	38934390	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.378	p.M126I	1.000	pfam_Ins145_P3_rcpt,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				142	0	0	84	29	25.6637
RYR1	0	genome.wustl.edu	37	19	39013867	39013867	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	39013867	39013867	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.10358	p.R3453H	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				203	0	0	112	49	30.4348
NFKBIB	0	genome.wustl.edu	37	19	39399408	39399408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	39399408	39399408	G	A	SNP	NFKBIB	ENST00000313582	human	ensembl	74_37	+1	known	missense	c.1007	p.S336N	0.008	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIB	HGNC	ENSG00000104825				193	0	0	89	51	36.4286
SARS2	0	genome.wustl.edu	37	19	39406730	39406730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	39406730	39406730	G	A	SNP	SARS2	ENST00000600042	human	ensembl	74_37	-1	known	missense	c.1300	p.R434C	1.000	pirsf_Ser-tRNA-ligase_type_1,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS2	HGNC	ENSG00000104835				48	0	0	27	10	27.027
SARS2	0	genome.wustl.edu	37	19	39412274	39412274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	39412274	39412274	G	A	SNP	SARS2	ENST00000221431	human	ensembl	74_37	-1	known	missense	c.427	p.R143W	1.000	pirsf_Ser-tRNA-ligase_type_1,superfamily_tRNA-bd_arm,tigrfam_Ser-tRNA-ligase_type_1	pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS2	HGNC	ENSG00000104835				43	0	0	25	10	28.5714
LRFN1	0	genome.wustl.edu	37	19	39804758	39804758	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	39804758	39804758	C	T	SNP	LRFN1	ENST00000248668	human	ensembl	74_37	-1	known	missense	c.1219	p.G407S	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN1	HGNC	ENSG00000128011				28	0	0	14	5	26.3158
FBL	0	genome.wustl.edu	37	19	40331273	40331273	+	Silent	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	40331273	40331273	T	A	SNP	FBL	ENST00000221801	human	ensembl	74_37	-1	known	silent	c.165	p.G55	0.001	pirsf_Fibrillarin	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBL	HGNC	ENSG00000105202				38	0	0	18	6	25
CNFN	0	genome.wustl.edu	37	19	42893100	42893100	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	42893100	42893100	G	A	SNP	CNFN	ENST00000222032	human	ensembl	74_37	-1	known	silent	c.90	p.D30	1.000	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	-	no_errors	CNFN	HGNC	ENSG00000105427				55	0	0	38	22	36.6667
PSG8	0	genome.wustl.edu	37	19	43259235	43259235	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	43259235	43259235	G	T	SNP	PSG8	ENST00000306511	human	ensembl	74_37	-1	known	missense	c.893	p.P298H	0.001	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG8	HGNC	ENSG00000124467				141	0	0	76	19	20
CADM4	0	genome.wustl.edu	37	19	44130372	44130372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	44130372	44130372	G	A	SNP	CADM4	ENST00000222374	human	ensembl	74_37	-1	known	missense	c.568	p.R190C	1.000	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM4	HGNC	ENSG00000105767				52	0	0	33	10	23.2558
ZNF155	0	genome.wustl.edu	37	19	44500737	44500737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	44500737	44500737	G	A	SNP	ZNF155	ENST00000270014	human	ensembl	74_37	+1	known	missense	c.728	p.R243H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF155	HGNC	ENSG00000204920				211	0	0	84	51	37.7778
ZNF225	0	genome.wustl.edu	37	19	44636092	44636092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	44636092	44636092	A	G	SNP	ZNF225	ENST00000262894	human	ensembl	74_37	+1	known	missense	c.1325	p.D442G	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF225	HGNC	ENSG00000256294				82	0	0	69	5	6.75676
PLIN4	0	genome.wustl.edu	37	19	4511361	4511361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	4511361	4511361	C	T	SNP	PLIN4	ENST00000301286	human	ensembl	74_37	-1	novel	missense	c.2569	p.G857S	0.121	NULL	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676				156	1	0.636943	111	12	9.7561
MARK4	0	genome.wustl.edu	37	19	45766584	45766584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	45766584	45766584	G	A	SNP	MARK4	ENST00000262891	human	ensembl	74_37	+1	known	missense	c.314	p.R105Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	MARK4	HGNC	ENSG00000007047				131	0	0	69	14	16.8675
RSPH6A	0	genome.wustl.edu	37	19	46308106	46308106	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	46308106	46308106	G	A	SNP	RSPH6A	ENST00000221538	human	ensembl	74_37	-1	known	missense	c.1057	p.R353C	0.067	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH6A	HGNC	ENSG00000104941				73	0	0	38	11	22.449
HIF3A	0	genome.wustl.edu	37	19	46815873	46815873	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	46815873	46815873	C	A	SNP	HIF3A	ENST00000377670	human	ensembl	74_37	+1	known	missense	c.988	p.Q330K	1.000	pfam_PAS_fold_3,superfamily_PAS,smart_PAC	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440				167	0	0	82	27	24.7706
HIF3A	0	genome.wustl.edu	37	19	46832648	46832648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	46832648	46832648	G	A	SNP	HIF3A	ENST00000377670	human	ensembl	74_37	+1	known	missense	c.1625	p.R542H	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440				26	0	0	18	6	25
STRN4	0	genome.wustl.edu	37	19	47236446	47236446	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	47236446	47236446	G	T	SNP	STRN4	ENST00000391910	human	ensembl	74_37	-1	known	missense	c.587	p.S196Y	1.000	pfam_Striatin_N	pfam_WD40_repeat,pfam_Striatin_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN4	HGNC	ENSG00000090372				39	0	0	25	8	24.2424
TICAM1	0	genome.wustl.edu	37	19	4818050	4818050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	4818050	4818050	G	A	SNP	TICAM1	ENST00000248244	human	ensembl	74_37	-1	known	missense	c.340	p.R114W	0.013	pirsf_TICAM1	superfamily_TIR_dom,pirsf_TICAM1	-	no_errors	TICAM1	HGNC	ENSG00000127666				65	0	0	32	16	33.3333
CARD8	0	genome.wustl.edu	37	19	48722193	48722193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	48722193	48722193	G	A	SNP	CARD8	ENST00000391898	human	ensembl	74_37	-1	known	missense	c.1238	p.P413L	0.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD8	HGNC	ENSG00000105483				102	0	0	47	32	40.5063
SPACA4	0	genome.wustl.edu	37	19	49110288	49110288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	49110288	49110288	C	T	SNP	SPACA4	ENST00000321762	human	ensembl	74_37	+1	known	missense	c.53	p.T18M	0.000	NULL	pfam_LY6_UPAR	-	no_errors	SPACA4	HGNC	ENSG00000177202				115	0	0	66	21	24.1379
TRPM4	0	genome.wustl.edu	37	19	49692270	49692270	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	49692270	49692270	G	A	SNP	TRPM4	ENST00000252826	human	ensembl	74_37	+1	known	silent	c.1941	p.P647	0.045	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529				172	1	0.578035	78	28	26.4151
ALDH16A1	0	genome.wustl.edu	37	19	49971689	49971689	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	49971689	49971689	C	T	SNP	ALDH16A1	ENST00000293350	human	ensembl	74_37	+1	known	silent	c.1990	p.L664	0.932	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	-	no_errors	ALDH16A1	HGNC	ENSG00000161618				200	0	0	109	47	30.1282
NOSIP	0	genome.wustl.edu	37	19	50060481	50060481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	50060481	50060481	C	T	SNP	NOSIP	ENST00000391853	human	ensembl	74_37	-1	known	missense	c.284	p.R95Q	0.680	pirsf_Nitric_oxide_synth-interacting	pirsf_Nitric_oxide_synth-interacting	-	no_errors	NOSIP	HGNC	ENSG00000142546				8	0	0	4	3	42.8571
PRR12	0	genome.wustl.edu	37	19	50101061	50101061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	50101061	50101061	C	T	SNP	PRR12	ENST00000418929	human	ensembl	74_37	+1	novel	missense	c.3469	p.R1157C	0.707	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464				18	0	0	6	7	53.8462
SIGLEC11	0	genome.wustl.edu	37	19	50463680	50463680	+	Splice_Site	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	50463680	50463680	T	C	SNP	SIGLEC11	ENST00000447370	human	ensembl	74_37	-1	known	splice_site	c.461-2	e3-2	0.917	-	-	-	no_errors	SIGLEC11	HGNC	ENSG00000161640				82	0	0	17	29	63.0435
KLK8	0	genome.wustl.edu	37	19	51503785	51503785	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	51503785	51503785	T	C	SNP	KLK8	ENST00000391806	human	ensembl	74_37	-1	known	missense	c.260	p.H87R	0.976	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK8	HGNC	ENSG00000129455				111	0	0	48	19	28.3582
KLK10	0	genome.wustl.edu	37	19	51519149	51519149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	51519149	51519149	G	A	SNP	KLK10	ENST00000309958	human	ensembl	74_37	-1	known	missense	c.533	p.A178V	0.011	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK10	HGNC	ENSG00000129451				10	0	0	7	2	22.2222
ZNF528	0	genome.wustl.edu	37	19	52918821	52918821	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	52918821	52918821	A	T	SNP	ZNF528	ENST00000360465	human	ensembl	74_37	+1	known	missense	c.716	p.K239M	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF528	HGNC	ENSG00000167555				54	0	0	34	7	17.0732
ZNF702P	0	genome.wustl.edu	37	19	53473579	53473579	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	53473579	53473579	G	A	SNP	ZNF702P	ENST00000270443	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF702P	HGNC	ENSG00000242779				63	0	0	27	8	22.8571
MIR518A1	0	genome.wustl.edu	37	19	54234335	54234335	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	54234335	54234335	C	T	SNP	MIR518A1	ENST00000385068	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	MIR518A1	HGNC	ENSG00000207803				55	0	0	27	7	20.5882
MYADM	0	genome.wustl.edu	37	19	54377015	54377015	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	54377015	54377015	G	A	SNP	MYADM	ENST00000336967	human	ensembl	74_37	+1	known	missense	c.232	p.V78M	0.350	pfam_Marvel	pfam_Marvel	-	no_errors	MYADM	HGNC	ENSG00000179820				130	1	0.763359	51	17	25
PRKCG	0	genome.wustl.edu	37	19	54394974	54394974	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	54394974	54394974	T	C	SNP	PRKCG	ENST00000540413	human	ensembl	74_37	+1	known	silent	c.576	p.S192	0.954	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_Protein_kinase_C_a/b/g,prints_C2_dom,pfscan_C2_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583				144	0	0	72	35	32.7103
LENG1	0	genome.wustl.edu	37	19	54659493	54659493	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	54659493	54659493	C	T	SNP	LENG1	ENST00000222224	human	ensembl	74_37	-1	known	missense	c.761	p.R254H	0.988	NULL	NULL	-	no_errors	LENG1	HGNC	ENSG00000105617				20	0	0	13	5	27.7778
LILRB4	0	genome.wustl.edu	37	19	55177373	55177373	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	55177373	55177373	A	G	SNP	LILRB4	ENST00000270452	human	ensembl	74_37	+1	known	missense	c.865	p.R289G	0.001	NULL	pfam_Immunoglobulin,pfscan_Ig-like_dom	-	no_errors	LILRB4	HGNC	ENSG00000186818				73	0	0	31	12	27.907
NCR1	0	genome.wustl.edu	37	19	55417575	55417575	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	55417575	55417575	C	T	SNP	NCR1	ENST00000291890	human	ensembl	74_37	+1	known	silent	c.30	p.C10	0.100	NULL	smart_Ig_sub	-	no_errors	NCR1	HGNC	ENSG00000189430				149	0	0	100	41	29.078
PPP1R12C	0	genome.wustl.edu	37	19	55614811	55614811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	55614811	55614811	C	T	SNP	PPP1R12C	ENST00000263433	human	ensembl	74_37	-1	known	missense	c.697	p.V233M	1.000	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12C	HGNC	ENSG00000125503				85	0	0	35	12	25.5319
TNNI3	0	genome.wustl.edu	37	19	55668652	55668652	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	55668652	55668652	C	T	SNP	TNNI3	ENST00000590463	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TNNI3	HGNC	ENSG00000129991				19	0	0	18	4	18.1818
SYT5	0	genome.wustl.edu	37	19	55687120	55687120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	55687120	55687120	C	T	SNP	SYT5	ENST00000354308	human	ensembl	74_37	-1	known	missense	c.497	p.R166Q	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT5	HGNC	ENSG00000129990				87	0	0	41	16	28.0702
SAFB2	0	genome.wustl.edu	37	19	5587937	5587937	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	5587937	5587937	G	A	SNP	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	silent	c.2580	p.R860	0.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				25	0	0	15	7	31.8182
SAFB2	0	genome.wustl.edu	37	19	5587943	5587943	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	5587943	5587943	C	T	SNP	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	silent	c.2574	p.Q858	0.007	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				30	0	0	12	11	47.8261
NLRP8	0	genome.wustl.edu	37	19	56465979	56465979	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	56465979	56465979	C	T	SNP	NLRP8	ENST00000291971	human	ensembl	74_37	+1	known	silent	c.555	p.H185	0.000	superfamily_P-loop_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709				90	0	0	54	15	21.7391
NLRP5	0	genome.wustl.edu	37	19	56565126	56565126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	56565126	56565126	C	T	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	+1	known	missense	c.3251	p.A1084V	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487				103	0	0	56	23	29.1139
ZNF787	0	genome.wustl.edu	37	19	56600436	56600436	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	56600436	56600436	G	A	SNP	ZNF787	ENST00000270459	human	ensembl	74_37	-1	known	silent	c.105	p.D35	0.830	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF787	HGNC	ENSG00000142409				14	0	0	4	3	42.8571
LONP1	0	genome.wustl.edu	37	19	5707144	5707144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	5707144	5707144	C	T	SNP	LONP1	ENST00000360614	human	ensembl	74_37	-1	known	missense	c.1073	p.R358Q	1.000	pfam_Pept_S16_N,smart_Pept_S16_N,tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP1	HGNC	ENSG00000196365				45	0	0	14	2	12.5
ZNF211	0	genome.wustl.edu	37	19	58152086	58152086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	58152086	58152086	G	A	SNP	ZNF211	ENST00000240731	human	ensembl	74_37	+1	known	missense	c.271	p.V91M	0.001	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF211	HGNC	ENSG00000121417				65	0	0	23	16	41.0256
FUT6	0	genome.wustl.edu	37	19	5831827	5831827	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	5831827	5831827	T	C	SNP	FUT6	ENST00000592563	human	ensembl	74_37	-1	known	missense	c.752	p.H251R	0.981	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT6	HGNC	ENSG00000156413				88	0	0	58	14	19.4444
FUT3	0	genome.wustl.edu	37	19	5844584	5844584	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	5844584	5844584	G	A	SNP	FUT3	ENST00000303225	human	ensembl	74_37	-1	known	silent	c.267	p.A89	0.079	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT3	HGNC	ENSG00000171124				252	0	0	153	48	23.8806
TUBB4A	0	genome.wustl.edu	37	19	6495655	6495655	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	6495655	6495655	C	T	SNP	TUBB4A	ENST00000264071	human	ensembl	74_37	-1	known	silent	c.855	p.T285	0.981	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Alpha_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin	-	no_errors	TUBB4A	HGNC	ENSG00000104833				119	0	0	52	23	30.6667
TNFSF14	0	genome.wustl.edu	37	19	6669903	6669903	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	6669903	6669903	G	A	SNP	TNFSF14	ENST00000599359	human	ensembl	74_37	-1	known	nonsense	c.178	p.Q60*	0.001	NULL	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF	-	no_errors	TNFSF14	HGNC	ENSG00000125735				157	0	0	83	30	26.5487
VAV1	0	genome.wustl.edu	37	19	6821668	6821668	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	6821668	6821668	G	A	SNP	VAV1	ENST00000602142	human	ensembl	74_37	+1	known	silent	c.357	p.P119	0.000	superfamily_CH-domain,pfscan_CH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968				99	0	0	85	16	15.8416
ZNF358	0	genome.wustl.edu	37	19	7584410	7584410	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	7584410	7584410	C	T	SNP	ZNF358	ENST00000394341	human	ensembl	74_37	+1	known	silent	c.282	p.L94	0.009	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF358	HGNC	ENSG00000198816				195	0	0	99	51	34
ADAMTS10	0	genome.wustl.edu	37	19	8656953	8656953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	8656953	8656953	G	A	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	missense	c.1622	p.S541L	0.922	NULL	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				80	0	0	43	9	17.3077
ADAMTS10	0	genome.wustl.edu	37	19	8668665	8668665	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	8668665	8668665	T	C	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	missense	c.539	p.Y180C	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				49	0	0	29	11	27.5
ACTL9	0	genome.wustl.edu	37	19	8807972	8807972	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	8807972	8807972	G	A	SNP	ACTL9	ENST00000324436	human	ensembl	74_37	-1	known	silent	c.1080	p.R360	0.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL9	HGNC	ENSG00000181786				27	0	0	9	8	47.0588
MUC16	0	genome.wustl.edu	37	19	9000147	9000147	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	9000147	9000147	C	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.40610	p.R13537M	0.997	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				116	0	0	56	19	25.3333
MUC16	0	genome.wustl.edu	37	19	9089934	9089934	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	9089934	9089934	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.1881	p.L627	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				85	0	0	76	4	5
MFSD9	0	genome.wustl.edu	37	2	103340288	103340288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	103340288	103340288	C	T	SNP	MFSD9	ENST00000258436	human	ensembl	74_37	-1	known	missense	c.508	p.G170R	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	MFSD9	HGNC	ENSG00000135953				78	0	0	47	17	26.5625
TGFBRAP1	0	genome.wustl.edu	37	2	105885907	105885907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	105885907	105885907	C	T	SNP	TGFBRAP1	ENST00000258449	human	ensembl	74_37	-1	known	missense	c.2228	p.R743H	0.679	pfam_VPS39/TGF_beta_rcpt-assoc_2	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966				43	0	0	20	8	28.5714
SULT1C3	0	genome.wustl.edu	37	2	108863670	108863670	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	108863670	108863670	A	G	SNP	SULT1C3	ENST00000329106	human	ensembl	74_37	+1	known	missense	c.20	p.N7S	0.003	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1C3	HGNC	ENSG00000196228				45	0	0	28	7	20
CCDC138	0	genome.wustl.edu	37	2	109405348	109405348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	109405348	109405348	G	A	SNP	CCDC138	ENST00000447782	human	ensembl	74_37	+1	known	missense	c.134	p.R45H	0.006	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006				123	0	0	72	21	22.5806
ACOXL	0	genome.wustl.edu	37	2	111789258	111789258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	111789258	111789258	G	A	SNP	ACOXL	ENST00000439055	human	ensembl	74_37	+1	known	missense	c.1336	p.V446M	0.002	pfam_Acyl-CoA_oxidase_C,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOXL	HGNC	ENSG00000153093				109	0	0	62	18	22.5
MERTK	0	genome.wustl.edu	37	2	112733042	112733042	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	112733042	112733042	T	C	SNP	MERTK	ENST00000295408	human	ensembl	74_37	+1	known	silent	c.1137	p.T379	0.006	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208				89	0	0	51	18	26.087
ZC3H6	0	genome.wustl.edu	37	2	113089407	113089407	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	113089407	113089407	C	A	SNP	ZC3H6	ENST00000343936	human	ensembl	74_37	+1	known	missense	c.2912	p.P971H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177				34	0	0	17	6	26.087
RPL23AP7	0	genome.wustl.edu	37	2	114369758	114369758	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	114369758	114369758	C	T	SNP	RPL23AP7	ENST00000391616	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL23AP7	HGNC	ENSG00000240356				79	0	0	37	7	15.9091
DPP10	0	genome.wustl.edu	37	2	116534834	116534834	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	116534834	116534834	A	G	SNP	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	silent	c.1284	p.E428	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497				57	0	0	45	3	6.25
PTPN4	0	genome.wustl.edu	37	2	120692467	120692467	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	120692467	120692467	G	A	SNP	PTPN4	ENST00000263708	human	ensembl	74_37	+1	known	missense	c.1288	p.E430K	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	PTPN4	HGNC	ENSG00000088179				75	0	0	49	19	27.9412
GLI2	0	genome.wustl.edu	37	2	121743872	121743872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	121743872	121743872	G	A	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	missense	c.1975	p.G659R	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				59	0	0	35	16	31.3725
GLI2	0	genome.wustl.edu	37	2	121746554	121746554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	121746554	121746554	G	A	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	missense	c.3064	p.G1022S	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				19	0	0	5	4	44.4444
CLASP1	0	genome.wustl.edu	37	2	122154732	122154732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	122154732	122154732	C	T	SNP	CLASP1	ENST00000263710	human	ensembl	74_37	-1	known	missense	c.3107	p.S1036N	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054				49	0	0	25	4	13.7931
FAM168B	0	genome.wustl.edu	37	2	131810509	131810509	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	131810509	131810509	C	T	SNP	FAM168B	ENST00000389915	human	ensembl	74_37	-1	known	silent	c.555	p.T185	0.308	NULL	NULL	-	no_errors	FAM168B	HGNC	ENSG00000152102				9	0	0	2	2	50
NCKAP5	0	genome.wustl.edu	37	2	133489555	133489555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	133489555	133489555	C	T	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.5198	p.R1733H	0.993	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				43	0	0	24	8	25
NCKAP5	0	genome.wustl.edu	37	2	133542365	133542365	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	133542365	133542365	C	T	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	silent	c.2019	p.A673	0.037	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				106	0	0	45	19	29.6875
R3HDM1	0	genome.wustl.edu	37	2	136399348	136399348	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	136399348	136399348	A	G	SNP	R3HDM1	ENST00000264160	human	ensembl	74_37	+1	known	missense	c.1462	p.N488D	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991				43	0	0	28	6	17.6471
LCT	0	genome.wustl.edu	37	2	136567157	136567157	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	136567157	136567157	G	A	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	silent	c.2760	p.G920	0.992	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				58	0	0	23	17	42.5
LRP1B	0	genome.wustl.edu	37	2	141299356	141299356	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	141299356	141299356	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.7379	p.T2460I	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				146	0	0	82	33	28.6957
LRP1B	0	genome.wustl.edu	37	2	141680553	141680553	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	141680553	141680553	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.3300	p.K1100	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				87	0	0	65	13	16.6667
FMNL2	0	genome.wustl.edu	37	2	153471485	153471485	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	153471485	153471485	G	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.1183	p.V395M	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827				81	0	0	34	10	22.7273
NBAS	0	genome.wustl.edu	37	2	15694199	15694199	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	15694199	15694199	A	G	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	silent	c.273	p.H91	1.000	superfamily_Quino_amine_DH_bsu	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				47	0	0	25	3	10.7143
CYTIP	0	genome.wustl.edu	37	2	158300372	158300372	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	158300372	158300372	C	A	SNP	CYTIP	ENST00000264192	human	ensembl	74_37	-1	known	missense	c.161	p.R54L	1.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	CYTIP	HGNC	ENSG00000115165				123	0	0	65	26	28.5714
LY75	0	genome.wustl.edu	37	2	160750520	160750520	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	160750520	160750520	T	C	SNP	LY75	ENST00000554112	human	ensembl	74_37	-1	known	missense	c.542	p.H181R	1.000	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219				74	0	0	41	27	39.7059
SLC4A10	0	genome.wustl.edu	37	2	162711564	162711564	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	162711564	162711564	G	T	SNP	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	missense	c.501	p.L167F	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290				48	0	0	33	8	19.5122
PXDN	0	genome.wustl.edu	37	2	1639246	1639246	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	1639246	1639246	G	A	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	silent	c.4254	p.A1418	0.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				17	0	0	5	4	44.4444
CSRNP3	0	genome.wustl.edu	37	2	166535528	166535528	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	166535528	166535528	G	T	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	missense	c.1023	p.E341D	0.747	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				124	0	0	79	20	20.202
SCN1A	0	genome.wustl.edu	37	2	166911252	166911252	+	Silent	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	166911252	166911252	A	C	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	silent	c.498	p.T166	0.891	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				25	0	0	17	4	19.0476
SCN9A	0	genome.wustl.edu	37	2	167055217	167055217	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	167055217	167055217	C	G	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.5935	p.D1979H	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				16	0	0	12	4	25
LRP2	0	genome.wustl.edu	37	2	170060632	170060632	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	170060632	170060632	T	C	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.7865	p.D2622G	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				245	0	0	187	45	19.3966
EVX2	0	genome.wustl.edu	37	2	176947040	176947040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	176947040	176947040	G	A	SNP	EVX2	ENST00000308618	human	ensembl	74_37	-1	known	missense	c.565	p.R189W	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1,prints_Homeobox_metazoa	-	no_errors	EVX2	HGNC	ENSG00000174279				18	0	0	11	4	26.6667
SMC6	0	genome.wustl.edu	37	2	17877642	17877642	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	17877642	17877642	G	A	SNP	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	nonsense	c.2524	p.R842*	0.329	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				41	0	0	17	9	34.6154
TTN	0	genome.wustl.edu	37	2	179398049	179398049	+	Silent	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	179398049	179398049	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.95589	p.T31863	0.174	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				64	0	0	37	14	27.451
TTN	0	genome.wustl.edu	37	2	179400960	179400960	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	179400960	179400960	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.92810	p.L30937P	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				20	0	0	14	5	26.3158
GEN1	0	genome.wustl.edu	37	2	17946245	17946245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	17946245	17946245	G	A	SNP	GEN1	ENST00000317402	human	ensembl	74_37	+1	known	missense	c.430	p.A144T	1.000	pfam_XPG-I_dom,smart_XPG-I_dom,prints_XPG/Rad2	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	GEN1	HGNC	ENSG00000178295				106	0	0	53	14	20.8955
TTN	0	genome.wustl.edu	37	2	179479424	179479424	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	179479424	179479424	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.41113	p.G13705W	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				35	0	0	20	4	16.6667
TTN	0	genome.wustl.edu	37	2	179499476	179499476	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	179499476	179499476	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.34421	p.I11474T	0.680	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				126	0	0	80	31	27.9279
SESTD1	0	genome.wustl.edu	37	2	179982318	179982318	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	179982318	179982318	G	A	SNP	SESTD1	ENST00000428443	human	ensembl	74_37	-1	known	nonsense	c.1465	p.R489*	1.000	NULL	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	SESTD1	HGNC	ENSG00000187231				94	0	0	53	16	23.1884
NEUROD1	0	genome.wustl.edu	37	2	182543295	182543295	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	182543295	182543295	C	T	SNP	NEUROD1	ENST00000295108	human	ensembl	74_37	-1	known	missense	c.293	p.R98H	1.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD1	HGNC	ENSG00000162992				37	0	0	15	8	34.7826
FSIP2	0	genome.wustl.edu	37	2	186671708	186671708	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	186671708	186671708	C	A	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.17942	p.P5981H	0.001	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				40	0	0	27	5	15.625
ANKAR	0	genome.wustl.edu	37	2	190606165	190606165	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	190606165	190606165	G	A	SNP	ANKAR	ENST00000313581	human	ensembl	74_37	+1	known	silent	c.3798	p.S1266	0.001	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687				73	0	0	29	14	32.5581
PMS1	0	genome.wustl.edu	37	2	190732629	190732629	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	190732629	190732629	A	G	SNP	PMS1	ENST00000441310	human	ensembl	74_37	+1	known	missense	c.2447	p.N816S	1.000	NULL	pfam_DNA_mismatch_repair_C,pfam_HMG_box_dom,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933				101	0	0	45	8	15.0943
MFSD6	0	genome.wustl.edu	37	2	191301592	191301592	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	191301592	191301592	T	G	SNP	MFSD6	ENST00000281416	human	ensembl	74_37	+1	known	nonsense	c.837	p.Y279*	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690				191	0	0	102	37	26.6187
STAT4	0	genome.wustl.edu	37	2	191898232	191898232	+	Silent	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	191898232	191898232	C	A	SNP	STAT4	ENST00000358470	human	ensembl	74_37	-1	known	silent	c.1836	p.V612	1.000	pfam_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378				37	0	0	27	3	10
SF3B1	0	genome.wustl.edu	37	2	198257723	198257723	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	198257723	198257723	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	74_37	-1	known	silent	c.3729	p.P1243	0.979	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524				57	0	0	46	10	17.8571
SF3B1	0	genome.wustl.edu	37	2	198268475	198268475	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	198268475	198268475	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	74_37	-1	known	missense	c.1553	p.Q518R	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524				33	0	0	13	5	27.7778
SATB2	0	genome.wustl.edu	37	2	200298107	200298107	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	200298107	200298107	C	T	SNP	SATB2	ENST00000260926	human	ensembl	74_37	-1	known	silent	c.300	p.A100	0.925	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042				71	0	0	34	13	27.6596
FAM126B	0	genome.wustl.edu	37	2	201857667	201857667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	201857667	201857667	C	T	SNP	FAM126B	ENST00000418596	human	ensembl	74_37	-1	known	missense	c.686	p.R229Q	1.000	pfam_Hyccin	pfam_Hyccin	-	no_errors	FAM126B	HGNC	ENSG00000155744				60	0	0	38	8	17.3913
CASP10	0	genome.wustl.edu	37	2	202082435	202082435	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	202082435	202082435	C	A	SNP	CASP10	ENST00000286186	human	ensembl	74_37	+1	known	missense	c.1540	p.P514T	1.000	smart_Pept_C14A_p45_core	pfam_Pept_C14_caspase,pfam_DED,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,prints_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20	-	no_errors	CASP10	HGNC	ENSG00000003400				148	1	0.671141	94	32	25.3968
TMEM237	0	genome.wustl.edu	37	2	202494478	202494478	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	202494478	202494478	C	T	SNP	TMEM237	ENST00000409883	human	ensembl	74_37	-1	known	silent	c.651	p.V217	0.886	NULL	NULL	-	no_errors	TMEM237	HGNC	ENSG00000155755				80	0	0	44	14	24.1379
ALS2	0	genome.wustl.edu	37	2	202569184	202569184	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	202569184	202569184	G	A	SNP	ALS2	ENST00000264276	human	ensembl	74_37	-1	known	missense	c.4831	p.R1611W	1.000	pfam_VPS9,pfscan_VPS9	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_RCC1/BLIP-II,superfamily_DH-domain,smart_MORN,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain,prints_Reg_chr_condens	-	no_errors	ALS2	HGNC	ENSG00000003393				37	0	0	18	7	28
CDK15	0	genome.wustl.edu	37	2	202755581	202755581	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	202755581	202755581	A	G	SNP	CDK15	ENST00000374598	human	ensembl	74_37	+1	known	silent	c.1272	p.K424	0.495	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK15	HGNC	ENSG00000138395				53	0	0	23	7	23.3333
FZD7	0	genome.wustl.edu	37	2	202899487	202899487	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	202899487	202899487	G	T	SNP	FZD7	ENST00000286201	human	ensembl	74_37	+1	known	missense	c.117	p.K39N	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD7	HGNC	ENSG00000155760				81	0	0	47	17	26.5625
BMPR2	0	genome.wustl.edu	37	2	203384850	203384850	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	203384850	203384850	G	A	SNP	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	nonsense	c.893	p.W298*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				56	0	0	26	10	27.7778
KANSL1L	0	genome.wustl.edu	37	2	210993825	210993825	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	210993825	210993825	G	A	SNP	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	missense	c.1160	p.A387V	1.000	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				120	0	0	67	35	34.3137
APOB	0	genome.wustl.edu	37	2	21227276	21227276	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	21227276	21227276	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.11952	p.T3984	0.058	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				83	0	0	52	13	20
APOB	0	genome.wustl.edu	37	2	21260067	21260067	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	21260067	21260067	C	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.598	p.A200S	0.274	pfam_Lipid_transpt_N,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				42	0	0	31	6	16.2162
STK36	0	genome.wustl.edu	37	2	219558685	219558685	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	219558685	219558685	G	A	SNP	STK36	ENST00000295709	human	ensembl	74_37	+1	known	missense	c.2315	p.R772Q	0.987	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK36	HGNC	ENSG00000163482				82	0	0	42	18	30
WNT6	0	genome.wustl.edu	37	2	219736402	219736402	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	219736402	219736402	C	T	SNP	WNT6	ENST00000233948	human	ensembl	74_37	+1	known	missense	c.497	p.A166V	1.000	pfam_Wnt,smart_Wnt,prints_Wnt6	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt6	-	no_errors	WNT6	HGNC	ENSG00000115596				16	0	0	8	4	33.3333
CCDC108	0	genome.wustl.edu	37	2	219895916	219895916	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	219895916	219895916	G	T	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	silent	c.927	p.P309	0.001	superfamily_PapD-like	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				33	0	0	9	4	30.7692
ANKZF1	0	genome.wustl.edu	37	2	220098595	220098595	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	220098595	220098595	C	T	SNP	ANKZF1	ENST00000323348	human	ensembl	74_37	+1	known	silent	c.978	p.L326	0.619	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKZF1	HGNC	ENSG00000163516				76	0	0	41	14	25.4545
PTPRN	0	genome.wustl.edu	37	2	220162723	220162723	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	220162723	220162723	G	A	SNP	PTPRN	ENST00000295718	human	ensembl	74_37	-1	known	silent	c.1771	p.L591	0.993	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN	HGNC	ENSG00000054356				66	0	0	26	7	21.2121
PTPRN	0	genome.wustl.edu	37	2	220166399	220166399	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	220166399	220166399	C	A	SNP	PTPRN	ENST00000295718	human	ensembl	74_37	-1	known	missense	c.1037	p.G346V	0.971	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN	HGNC	ENSG00000054356				47	0	0	20	7	25.9259
GMPPA	0	genome.wustl.edu	37	2	220371072	220371072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	220371072	220371072	G	A	SNP	GMPPA	ENST00000313597	human	ensembl	74_37	+1	known	missense	c.1090	p.D364N	1.000	NULL	pfam_NTP_transferase	-	no_errors	GMPPA	HGNC	ENSG00000144591				93	0	0	25	10	28.5714
ASIC4	0	genome.wustl.edu	37	2	220379398	220379398	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	220379398	220379398	G	A	SNP	ASIC4	ENST00000347842	human	ensembl	74_37	+1	known	silent	c.333	p.R111	0.995	NULL	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC4	HGNC	ENSG00000072182				37	0	0	17	7	29.1667
OBSL1	0	genome.wustl.edu	37	2	220432935	220432935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	220432935	220432935	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.1124	p.R375H	0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				42	0	0	12	8	40
NYAP2	0	genome.wustl.edu	37	2	226447270	226447270	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	226447270	226447270	G	A	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	silent	c.1137	p.S379	0.005	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				24	0	0	11	4	26.6667
COL4A3	0	genome.wustl.edu	37	2	228128641	228128641	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	228128641	228128641	G	A	SNP	COL4A3	ENST00000396578	human	ensembl	74_37	+1	known	silent	c.1296	p.P432	0.302	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031				91	0	0	35	22	38.5965
TRIP12	0	genome.wustl.edu	37	2	230659897	230659897	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	230659897	230659897	G	A	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	silent	c.3741	p.G1247	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				92	0	0	79	18	18.5567
TRIP12	0	genome.wustl.edu	37	2	230673018	230673018	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	230673018	230673018	A	T	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	missense	c.2145	p.D715E	0.989	superfamily_ARM-type_fold	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				99	0	0	54	20	27.027
SLC16A14	0	genome.wustl.edu	37	2	230911029	230911029	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	230911029	230911029	G	A	SNP	SLC16A14	ENST00000295190	human	ensembl	74_37	-1	known	silent	c.813	p.A271	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053				146	0	0	85	33	27.9661
ALPP	0	genome.wustl.edu	37	2	233246071	233246071	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	233246071	233246071	G	A	SNP	ALPP	ENST00000392027	human	ensembl	74_37	+1	known	missense	c.1303	p.E435K	0.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283				88	0	0	42	6	12.5
INPP5D	0	genome.wustl.edu	37	2	234093159	234093159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	234093159	234093159	G	A	SNP	INPP5D	ENST00000359570	human	ensembl	74_37	+1	known	missense	c.2231	p.C744Y	1.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,pfscan_SH2,prints_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918				44	0	0	22	2	8.33333
UGT1A5	0	genome.wustl.edu	37	2	234622109	234622109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	234622109	234622109	G	A	SNP	UGT1A5	ENST00000373414	human	ensembl	74_37	+1	known	missense	c.472	p.A158T	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A5	HGNC	ENSG00000240224				233	0	0	105	67	38.9535
ARL4C	0	genome.wustl.edu	37	2	235404797	235404797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	235404797	235404797	G	A	SNP	ARL4C	ENST00000339728	human	ensembl	74_37	-1	known	missense	c.434	p.A145V	1.000	pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL4C	HGNC	ENSG00000188042				42	0	0	33	8	19.5122
AGAP1	0	genome.wustl.edu	37	2	236706491	236706491	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	236706491	236706491	C	T	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	silent	c.762	p.S254	0.419	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				283	0	0	145	33	18.5393
LRRFIP1	0	genome.wustl.edu	37	2	238672491	238672491	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	238672491	238672491	A	G	SNP	LRRFIP1	ENST00000392000	human	ensembl	74_37	+1	known	missense	c.2135	p.Q712R	0.000	NULL	pfam_Leu-rich_rep_flightless-int_pr	-	no_errors	LRRFIP1	HGNC	ENSG00000124831				51	0	0	44	8	15.3846
TRAF3IP1	0	genome.wustl.edu	37	2	239234487	239234487	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	239234487	239234487	T	C	SNP	TRAF3IP1	ENST00000373327	human	ensembl	74_37	+1	known	missense	c.230	p.I77T	1.000	NULL	NULL	-	no_errors	TRAF3IP1	HGNC	ENSG00000204104				80	0	0	56	5	8.19672
PRR21	0	genome.wustl.edu	37	2	240981360	240981360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	240981360	240981360	C	T	SNP	PRR21	ENST00000408934	human	ensembl	74_37	-1	known	missense	c.1040	p.R347H	0.004	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961				108	0	0	58	5	7.93651
PRR21	0	genome.wustl.edu	37	2	240982089	240982089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	240982089	240982089	G	A	SNP	PRR21	ENST00000408934	human	ensembl	74_37	-1	known	missense	c.311	p.T104M	0.000	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961				159	0	0	108	16	12.9032
KIF1A	0	genome.wustl.edu	37	2	241664737	241664737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	241664737	241664737	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	missense	c.4207	p.R1403C	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				23	0	0	4	3	42.8571
DPYSL5	0	genome.wustl.edu	37	2	27164917	27164917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	27164917	27164917	G	A	SNP	DPYSL5	ENST00000288699	human	ensembl	74_37	+1	known	missense	c.1189	p.G397R	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851				168	0	0	71	29	29
TMEM214	0	genome.wustl.edu	37	2	27263303	27263303	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	27263303	27263303	C	T	SNP	TMEM214	ENST00000238788	human	ensembl	74_37	+1	known	silent	c.1882	p.L628	0.000	pfam_DUF2359_TMEM214	pfam_DUF2359_TMEM214	-	no_errors	TMEM214	HGNC	ENSG00000119777				107	0	0	50	17	25.3731
KHK	0	genome.wustl.edu	37	2	27317386	27317386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	27317386	27317386	G	A	SNP	KHK	ENST00000260599	human	ensembl	74_37	+1	known	missense	c.251	p.R84H	0.416	pfam_PfkB_dom	pfam_PfkB_dom	-	no_errors	KHK	HGNC	ENSG00000138030				148	0	0	96	31	24.4094
SLC5A6	0	genome.wustl.edu	37	2	27430334	27430334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	27430334	27430334	G	A	SNP	SLC5A6	ENST00000310574	human	ensembl	74_37	-1	known	missense	c.185	p.A62V	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074				75	0	0	34	13	27.6596
DNAJC5G	0	genome.wustl.edu	37	2	27500791	27500791	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	27500791	27500791	G	A	SNP	DNAJC5G	ENST00000296097	human	ensembl	74_37	+1	known	missense	c.283	p.D95N	1.000	pfam_DnaJ_domain,superfamily_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC5G	HGNC	ENSG00000163793				69	0	0	26	10	27.7778
LCLAT1	0	genome.wustl.edu	37	2	30756096	30756096	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	30756096	30756096	C	A	SNP	LCLAT1	ENST00000309052	human	ensembl	74_37	+1	known	missense	c.394	p.L132M	1.000	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	LCLAT1	HGNC	ENSG00000172954				214	0	0	161	45	21.8447
TSSC1	0	genome.wustl.edu	37	2	3196254	3196254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	3196254	3196254	G	A	SNP	TSSC1	ENST00000382125	human	ensembl	74_37	-1	known	missense	c.920	p.S307L	1.000	pfscan_WD40_repeat_dom	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TSSC1	HGNC	ENSG00000032389				95	0	0	48	13	21.3115
BIRC6	0	genome.wustl.edu	37	2	32640462	32640462	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	32640462	32640462	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	silent	c.2103	p.P701	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				50	0	0	29	12	29.2683
BIRC6	0	genome.wustl.edu	37	2	32750641	32750641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	32750641	32750641	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.11866	p.A3956T	0.999	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				48	0	0	32	10	23.8095
CRIM1	0	genome.wustl.edu	37	2	36771623	36771623	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	36771623	36771623	A	G	SNP	CRIM1	ENST00000280527	human	ensembl	74_37	+1	known	missense	c.2728	p.I910V	1.000	NULL	pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938				49	0	0	37	13	26
EIF2AK2	0	genome.wustl.edu	37	2	37347260	37347260	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	37347260	37347260	T	C	SNP	EIF2AK2	ENST00000233057	human	ensembl	74_37	-1	known	missense	c.1090	p.I364V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_dsRNA-bd_dom,superfamily_Kinase-like_dom,smart_dsRNA-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_dsRNA-bd_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EIF2AK2	HGNC	ENSG00000055332				42	0	0	18	11	37.931
PRKD3	0	genome.wustl.edu	37	2	37520360	37520360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	37520360	37520360	C	T	SNP	PRKD3	ENST00000234179	human	ensembl	74_37	-1	known	missense	c.343	p.D115N	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825				67	0	0	59	5	7.8125
CYP1B1	0	genome.wustl.edu	37	2	38302293	38302293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	38302293	38302293	C	T	SNP	CYP1B1	ENST00000260630	human	ensembl	74_37	-1	known	missense	c.239	p.R80H	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1B1	HGNC	ENSG00000138061				8	0	0	2	2	50
PLEKHH2	0	genome.wustl.edu	37	2	43973086	43973086	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	43973086	43973086	C	T	SNP	PLEKHH2	ENST00000282406	human	ensembl	74_37	+1	known	silent	c.3637	p.L1213	0.998	smart_Band_41_domain,pfscan_FERM_domain	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527				43	0	0	26	7	21.2121
SPTBN1	0	genome.wustl.edu	37	2	54858182	54858182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	54858182	54858182	G	A	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	missense	c.2998	p.G1000S	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				92	0	0	37	11	22.9167
FANCL	0	genome.wustl.edu	37	2	58431275	58431275	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	58431275	58431275	A	G	SNP	FANCL	ENST00000233741	human	ensembl	74_37	-1	known	missense	c.461	p.L154S	1.000	pfam_FancL_WD-rpt_cont_dom	pfam_FancL_WD-rpt_cont_dom	-	no_errors	FANCL	HGNC	ENSG00000115392				82	0	0	49	12	19.6721
PEX13	0	genome.wustl.edu	37	2	61259029	61259029	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	61259029	61259029	T	C	SNP	PEX13	ENST00000295030	human	ensembl	74_37	+1	known	missense	c.568	p.Y190H	1.000	pfam_Peroxin-13_N	pfam_Peroxin-13_N,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PEX13	HGNC	ENSG00000162928				86	0	0	50	10	16.6667
ANXA4	0	genome.wustl.edu	37	2	70037735	70037735	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	70037735	70037735	G	T	SNP	ANXA4	ENST00000394295	human	ensembl	74_37	+1	known	missense	c.407	p.R136L	0.973	pfam_Annexin_repeat,smart_Annexin_repeat,prints_AnnexinIV	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIV,prints_AnnexinV	-	no_errors	ANXA4	HGNC	ENSG00000196975				66	0	0	29	17	36.9565
TGFA	0	genome.wustl.edu	37	2	70677991	70677991	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	70677991	70677991	T	C	SNP	TGFA	ENST00000295400	human	ensembl	74_37	-1	known	nonstop	c.483	p.*161W	0.960	NULL	pfscan_EG-like_dom	-	no_errors	TGFA	HGNC	ENSG00000163235				25	0	0	10	3	23.0769
ZNF638	0	genome.wustl.edu	37	2	71577133	71577133	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	71577133	71577133	G	A	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	missense	c.1049	p.R350Q	0.790	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				84	0	0	36	19	34.5455
FBXO41	0	genome.wustl.edu	37	2	73487618	73487618	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	73487618	73487618	T	G	SNP	FBXO41	ENST00000295133	human	ensembl	74_37	-1	known	missense	c.2531	p.Q844P	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO41	HGNC	ENSG00000163013				19	0	0	4	4	50
ALMS1	0	genome.wustl.edu	37	2	73800368	73800368	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	73800368	73800368	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	silent	c.11361	p.A3787	0.991	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				83	0	0	83	5	5.68182
C2orf78	0	genome.wustl.edu	37	2	74044060	74044060	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	74044060	74044060	T	A	SNP	C2orf78	ENST00000409561	human	ensembl	74_37	+1	novel	missense	c.2710	p.F904I	0.962	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833				12	0	0	7	8	53.3333
TET3	0	genome.wustl.edu	37	2	74307623	74307623	+	Splice_Site	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	74307623	74307623	A	G	SNP	TET3	ENST00000409262	human	ensembl	74_37	+1	known	splice_site	c.2181-2	e3-2	1.000	-	-	-	no_errors	TET3	HGNC	ENSG00000187605				25	0	0	14	4	22.2222
DCTN1	0	genome.wustl.edu	37	2	74592756	74592756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	74592756	74592756	C	T	SNP	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	missense	c.2915	p.R972Q	1.000	superfamily_P-loop_NTPase	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				84	0	0	56	15	21.1268
M1AP	0	genome.wustl.edu	37	2	74867389	74867389	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	74867389	74867389	C	T	SNP	M1AP	ENST00000290536	human	ensembl	74_37	-1	known	missense	c.14	p.R5Q	0.000	NULL	NULL	-	no_errors	M1AP	HGNC	ENSG00000159374				55	0	0	28	13	31.7073
SEMA4F	0	genome.wustl.edu	37	2	74907036	74907036	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	74907036	74907036	C	T	SNP	SEMA4F	ENST00000357877	human	ensembl	74_37	+1	known	silent	c.2013	p.L671	0.649	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4F	HGNC	ENSG00000135622				61	0	0	30	10	25
DNAH6	0	genome.wustl.edu	37	2	84811253	84811253	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	84811253	84811253	G	A	SNP	DNAH6	ENST00000237449	human	ensembl	74_37	+1	known	missense	c.2360	p.R787Q	0.987	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH6	HGNC	ENSG00000115423				155	0	0	87	38	30.4
CD8A	0	genome.wustl.edu	37	2	87016520	87016520	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	87016520	87016520	T	C	SNP	CD8A	ENST00000538832	human	ensembl	74_37	-1	known	missense	c.674	p.Y225C	0.998	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD8A	HGNC	ENSG00000153563				170	0	0	90	17	15.8879
ASAP2	0	genome.wustl.edu	37	2	9463332	9463332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	9463332	9463332	G	A	SNP	ASAP2	ENST00000281419	human	ensembl	74_37	+1	known	missense	c.553	p.E185K	0.999	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693				196	0	0	110	20	15.3846
CPSF3	0	genome.wustl.edu	37	2	9581993	9581993	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	9581993	9581993	C	A	SNP	CPSF3	ENST00000238112	human	ensembl	74_37	+1	known	missense	c.983	p.S328Y	1.000	pfam_Beta_Casp	pfam_CPSF73-100_C,pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3	HGNC	ENSG00000119203				81	0	0	46	9	16.3636
ITPRIPL1	0	genome.wustl.edu	37	2	96993744	96993744	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	96993744	96993744	C	T	SNP	ITPRIPL1	ENST00000361124	human	ensembl	74_37	+1	known	missense	c.1399	p.R467W	0.004	NULL	NULL	-	no_errors	ITPRIPL1	HGNC	ENSG00000198885				140	0	0	67	22	24.7191
FAHD2B	0	genome.wustl.edu	37	2	97755974	97755974	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	97755974	97755974	C	A	SNP	FAHD2B	ENST00000272610	human	ensembl	74_37	-1	known	missense	c.334	p.G112C	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2B	HGNC	ENSG00000144199				22	0	0	11	4	26.6667
TMEM131	0	genome.wustl.edu	37	2	98376193	98376193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	98376193	98376193	C	T	SNP	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	missense	c.5128	p.V1710I	0.797	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				31	0	0	12	10	45.4545
VWA3B	0	genome.wustl.edu	37	2	98928687	98928687	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	98928687	98928687	G	A	SNP	VWA3B	ENST00000477737	human	ensembl	74_37	+1	known	missense	c.3760	p.A1254T	0.024	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658				96	0	0	36	31	46.2687
SNPH	0	genome.wustl.edu	37	20	1286354	1286354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	1286354	1286354	C	T	SNP	SNPH	ENST00000381867	human	ensembl	74_37	+1	known	missense	c.1273	p.R425C	0.010	NULL	NULL	-	no_errors	SNPH	HGNC	ENSG00000101298				27	0	0	12	5	29.4118
RRBP1	0	genome.wustl.edu	37	20	17601380	17601380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	17601380	17601380	C	T	SNP	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	missense	c.3487	p.A1163T	0.000	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844				46	0	0	38	3	7.31707
C20orf26	0	genome.wustl.edu	37	20	20079389	20079389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	20079389	20079389	G	A	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	missense	c.790	p.G264R	0.999	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				117	0	0	94	5	5.05051
XRN2	0	genome.wustl.edu	37	20	21367540	21367540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	21367540	21367540	C	T	SNP	XRN2	ENST00000377191	human	ensembl	74_37	+1	known	missense	c.2683	p.R895W	1.000	pirsf_5_3_exoribonuclease_2	pfam_Put_53exo,superfamily_Znf_CCHC,pirsf_5_3_exoribonuclease_2	-	no_errors	XRN2	HGNC	ENSG00000088930				146	0	0	56	28	33.3333
NINL	0	genome.wustl.edu	37	20	25439036	25439036	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	25439036	25439036	G	A	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.3826	p.R1276C	0.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				123	0	0	68	9	11.6883
FASTKD5	0	genome.wustl.edu	37	20	3128626	3128626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	3128626	3128626	C	T	SNP	FASTKD5	ENST00000380266	human	ensembl	74_37	-1	known	missense	c.1091	p.R364H	1.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD5	HGNC	ENSG00000215251				121	0	0	70	18	20.4545
DNMT3B	0	genome.wustl.edu	37	20	31368231	31368231	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	31368231	31368231	G	A	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	silent	c.102	p.S34	0.748	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				47	0	0	21	11	34.375
CDK5RAP1	0	genome.wustl.edu	37	20	31962015	31962015	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	31962015	31962015	G	T	SNP	CDK5RAP1	ENST00000357886	human	ensembl	74_37	-1	known	missense	c.1153	p.L385M	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391				129	0	0	67	28	29.4737
AHCY	0	genome.wustl.edu	37	20	32883307	32883307	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	32883307	32883307	C	T	SNP	AHCY	ENST00000217426	human	ensembl	74_37	-1	known	missense	c.113	p.R38Q	1.000	pfam_Adenosylhomocysteinase,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCY	HGNC	ENSG00000101444				55	0	0	16	7	30.4348
AHCY	0	genome.wustl.edu	37	20	32883364	32883364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	32883364	32883364	C	T	SNP	AHCY	ENST00000217426	human	ensembl	74_37	-1	known	missense	c.56	p.R19H	1.000	pfam_Adenosylhomocysteinase,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCY	HGNC	ENSG00000101444				43	0	0	21	8	27.5862
MYH7B	0	genome.wustl.edu	37	20	33589114	33589114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	33589114	33589114	C	T	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	missense	c.5668	p.R1890C	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				16	0	0	6	3	33.3333
CNBD2	0	genome.wustl.edu	37	20	34572684	34572684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	34572684	34572684	C	T	SNP	CNBD2	ENST00000373973	human	ensembl	74_37	+1	known	missense	c.700	p.R234W	0.671	superfamily_cNMP-bd-like,smart_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNBD2	HGNC	ENSG00000149646				153	0	0	107	35	24.6479
CTNNBL1	0	genome.wustl.edu	37	20	36407704	36407704	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	36407704	36407704	G	A	SNP	CTNNBL1	ENST00000405275	human	ensembl	74_37	+1	known	missense	c.917	p.G306D	1.000	superfamily_ARM-type_fold	pfam_CTNNBL1_N,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792				104	0	0	70	16	18.6047
CTNNBL1	0	genome.wustl.edu	37	20	36431375	36431375	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	36431375	36431375	C	T	SNP	CTNNBL1	ENST00000405275	human	ensembl	74_37	+1	known	nonsense	c.1057	p.R353*	1.000	superfamily_ARM-type_fold	pfam_CTNNBL1_N,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792				63	0	0	30	10	25
CTNNBL1	0	genome.wustl.edu	37	20	36500368	36500368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	36500368	36500368	C	T	SNP	CTNNBL1	ENST00000405275	human	ensembl	74_37	+1	known	missense	c.1564	p.R522W	1.000	NULL	pfam_CTNNBL1_N,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792				87	0	0	49	3	5.76923
HSPA12B	0	genome.wustl.edu	37	20	3719329	3719329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	3719329	3719329	C	T	SNP	HSPA12B	ENST00000254963	human	ensembl	74_37	+1	known	missense	c.8	p.A3V	1.000	NULL	NULL	-	no_errors	HSPA12B	HGNC	ENSG00000132622				128	0	0	68	25	26.8817
ACTR5	0	genome.wustl.edu	37	20	37378698	37378698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	37378698	37378698	C	T	SNP	ACTR5	ENST00000243903	human	ensembl	74_37	+1	known	missense	c.421	p.P141S	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR5	HGNC	ENSG00000101442				94	0	0	36	14	28
MAFB	0	genome.wustl.edu	37	20	39316981	39316981	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	39316981	39316981	C	T	SNP	MAFB	ENST00000373313	human	ensembl	74_37	-1	known	silent	c.510	p.S170	0.986	NULL	pfam_bZIP_Maf,pfam_Maf_TF_N,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	MAFB	HGNC	ENSG00000204103				10	0	0	4	4	50
R3HDML	0	genome.wustl.edu	37	20	42972055	42972055	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	42972055	42972055	A	G	SNP	R3HDML	ENST00000217043	human	ensembl	74_37	+1	known	missense	c.419	p.E140G	0.958	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	R3HDML	HGNC	ENSG00000101074				115	0	0	51	20	28.169
ENSG00000226812	0	genome.wustl.edu	37	20	42979474	42979474	+	RNA	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	42979474	42979474	C	A	SNP	ENSG00000226812	ENST00000430481	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP5-881L22.5	Clone_based_vega_gene	ENSG00000226812				117	0	0	52	19	26.7606
HNF4A	0	genome.wustl.edu	37	20	43056983	43056983	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	43056983	43056983	A	G	SNP	HNF4A	ENST00000316099	human	ensembl	74_37	+1	known	missense	c.1138	p.S380G	1.000	prints_COUP_TF	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076				113	0	0	58	21	26.5823
SERINC3	0	genome.wustl.edu	37	20	43133514	43133514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	43133514	43133514	C	T	SNP	SERINC3	ENST00000255175	human	ensembl	74_37	-1	known	missense	c.802	p.G268S	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC3	HGNC	ENSG00000132824				49	0	0	27	17	38.6364
MMP9	0	genome.wustl.edu	37	20	44639239	44639239	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	44639239	44639239	C	T	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	silent	c.489	p.D163	0.717	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP9	HGNC	ENSG00000100985				37	0	0	23	3	11.5385
MMP9	0	genome.wustl.edu	37	20	44644923	44644923	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	44644923	44644923	G	A	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	nonsense	c.2040	p.W680*	1.000	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP9	HGNC	ENSG00000100985				107	0	0	63	26	29.2135
SLC2A10	0	genome.wustl.edu	37	20	45354379	45354379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	45354379	45354379	G	A	SNP	SLC2A10	ENST00000359271	human	ensembl	74_37	+1	known	missense	c.704	p.G235D	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A10	HGNC	ENSG00000197496				175	0	0	79	32	28.8288
NCOA3	0	genome.wustl.edu	37	20	46265451	46265451	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	46265451	46265451	T	G	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	missense	c.2321	p.I774S	0.036	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				57	0	0	34	14	29.1667
CSNK2A1	0	genome.wustl.edu	37	20	473005	473005	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	473005	473005	G	A	SNP	CSNK2A1	ENST00000217244	human	ensembl	74_37	-1	known	nonsense	c.514	p.R172*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A1	HGNC	ENSG00000101266				38	0	0	20	8	28.5714
SLC23A2	0	genome.wustl.edu	37	20	4864313	4864313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	4864313	4864313	C	T	SNP	SLC23A2	ENST00000338244	human	ensembl	74_37	-1	known	missense	c.799	p.G267R	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057				137	0	0	65	20	23.5294
SLC23A2	0	genome.wustl.edu	37	20	4866508	4866508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	4866508	4866508	C	T	SNP	SLC23A2	ENST00000338244	human	ensembl	74_37	-1	known	missense	c.530	p.R177Q	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057				38	0	0	27	7	20.5882
MOCS3	0	genome.wustl.edu	37	20	49575756	49575756	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	49575756	49575756	T	C	SNP	MOCS3	ENST00000244051	human	ensembl	74_37	+1	known	missense	c.377	p.V126A	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_MoeZ_MoeB,pfam_Rhodanese-like_dom,superfamily_Molybdenum_cofac_synth_MoeB,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	MOCS3	HGNC	ENSG00000124217				124	0	0	63	17	21.25
KCNG1	0	genome.wustl.edu	37	20	49620767	49620767	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	49620767	49620767	G	C	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	missense	c.1351	p.L451V	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				117	0	0	60	4	6.25
KCNG1	0	genome.wustl.edu	37	20	49626736	49626736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	49626736	49626736	C	T	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	missense	c.140	p.R47Q	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				48	0	0	6	6	50
ZFP64	0	genome.wustl.edu	37	20	50769726	50769726	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	50769726	50769726	G	A	SNP	ZFP64	ENST00000216923	human	ensembl	74_37	-1	known	silent	c.1005	p.R335	0.813	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				124	0	0	54	20	27.027
ZBP1	0	genome.wustl.edu	37	20	56190021	56190021	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	56190021	56190021	G	A	SNP	ZBP1	ENST00000343535	human	ensembl	74_37	-1	known	nonsense	c.424	p.R142*	0.888	pfam_dsRNA_A_deaminase,smart_dsRNA_A_deaminase	pfam_dsRNA_A_deaminase,smart_dsRNA_A_deaminase	-	no_errors	ZBP1	HGNC	ENSG00000124256				255	0	0	115	45	28.125
TUBB1	0	genome.wustl.edu	37	20	57599576	57599576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	57599576	57599576	C	T	SNP	TUBB1	ENST00000217133	human	ensembl	74_37	+1	known	missense	c.1094	p.A365V	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162				39	0	0	34	6	15
TUBB1	0	genome.wustl.edu	37	20	57599798	57599798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	57599798	57599798	C	T	SNP	TUBB1	ENST00000217133	human	ensembl	74_37	+1	known	missense	c.1316	p.T439M	0.000	prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162				68	0	0	45	10	18.1818
LAMA5	0	genome.wustl.edu	37	20	60911481	60911481	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	60911481	60911481	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	silent	c.2238	p.C746	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				75	0	0	30	6	16.6667
COL20A1	0	genome.wustl.edu	37	20	61959433	61959433	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	61959433	61959433	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	silent	c.3663	p.G1221	0.337	pfam_Collagen	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				78	0	0	34	7	17.0732
C20orf195	0	genome.wustl.edu	37	20	62187663	62187663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	62187663	62187663	C	T	SNP	C20orf195	ENST00000370097	human	ensembl	74_37	+1	known	missense	c.647	p.A216V	0.998	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	C20orf195	HGNC	ENSG00000125531				283	0	0	100	42	29.5775
HELZ2	0	genome.wustl.edu	37	20	62194368	62194368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	62194368	62194368	C	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.5807	p.R1936H	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				16	0	0	8	4	33.3333
RTEL1	0	genome.wustl.edu	37	20	62324527	62324527	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	62324527	62324527	G	A	SNP	RTEL1	ENST00000318100	human	ensembl	74_37	+1	known	silent	c.2883	p.K961	0.975	NULL	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366				186	0	0	80	32	28.5714
MIR941-3	0	genome.wustl.edu	37	20	62551193	62551193	+	RNA	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	62551193	62551193	G	T	SNP	MIR941-3	ENST00000401376	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.980	-	-	-	no_errors	MIR941-3	HGNC	ENSG00000216195				60	0	0	21	14	40
OPRL1	0	genome.wustl.edu	37	20	62729761	62729761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	62729761	62729761	G	A	SNP	OPRL1	ENST00000336866	human	ensembl	74_37	+1	known	missense	c.722	p.R241Q	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_X_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt	-	no_errors	OPRL1	HGNC	ENSG00000125510				178	0	0	90	20	18.1818
ANGPT4	0	genome.wustl.edu	37	20	870881	870881	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	870881	870881	C	T	SNP	ANGPT4	ENST00000381922	human	ensembl	74_37	-1	known	missense	c.440	p.R147H	0.999	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT4	HGNC	ENSG00000101280				58	0	0	23	16	41.0256
TPTE	0	genome.wustl.edu	37	21	10971319	10971319	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	10971319	10971319	A	G	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	missense	c.38	p.V13A	0.001	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				85	0	0	53	5	8.62069
NRIP1	0	genome.wustl.edu	37	21	16340186	16340186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	16340186	16340186	C	T	SNP	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	missense	c.328	p.V110I	1.000	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				91	0	0	79	5	5.95238
CYYR1	0	genome.wustl.edu	37	21	27840845	27840845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	27840845	27840845	G	A	SNP	CYYR1	ENST00000299340	human	ensembl	74_37	-1	known	missense	c.440	p.P147L	1.000	pfam_CYYR1	pfam_CYYR1	-	no_errors	CYYR1	HGNC	ENSG00000166265				93	0	0	50	6	10.7143
LTN1	0	genome.wustl.edu	37	21	30339484	30339484	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	30339484	30339484	A	G	SNP	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	silent	c.1467	p.D489	0.044	superfamily_ARM-type_fold	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				38	0	0	16	7	30.4348
MAP3K7CL	0	genome.wustl.edu	37	21	30464856	30464856	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	30464856	30464856	G	A	SNP	MAP3K7CL	ENST00000341618	human	ensembl	74_37	+1	known	silent	c.324	p.K108	0.938	NULL	NULL	-	no_errors	MAP3K7CL	HGNC	ENSG00000156265				94	0	0	77	5	6.09756
TIAM1	0	genome.wustl.edu	37	21	32502534	32502534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	32502534	32502534	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.4042	p.A1348T	1.000	smart_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				205	1	0.485437	112	42	27.2727
TIAM1	0	genome.wustl.edu	37	21	32589954	32589954	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	32589954	32589954	G	A	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.2057	p.A686V	0.974	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				128	0	0	72	25	25.7732
SYNJ1	0	genome.wustl.edu	37	21	34011320	34011320	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	34011320	34011320	C	T	SNP	SYNJ1	ENST00000433931	human	ensembl	74_37	-1	known	missense	c.3930	p.M1310I	0.912	NULL	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082				223	0	0	101	49	32.6667
CRYZL1	0	genome.wustl.edu	37	21	35003792	35003792	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	35003792	35003792	C	A	SNP	CRYZL1	ENST00000381554	human	ensembl	74_37	-1	known	missense	c.66	p.K22N	1.000	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	CRYZL1	HGNC	ENSG00000205758				61	0	0	27	2	6.89655
KCNJ15	0	genome.wustl.edu	37	21	39671742	39671742	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	39671742	39671742	A	G	SNP	KCNJ15	ENST00000328656	human	ensembl	74_37	+1	known	missense	c.559	p.T187A	0.991	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551				67	0	0	28	22	44
ERG	0	genome.wustl.edu	37	21	39755470	39755470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	39755470	39755470	G	A	SNP	ERG	ENST00000398919	human	ensembl	74_37	-1	known	missense	c.1316	p.A439V	0.999	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERG	HGNC	ENSG00000157554				44	0	0	24	10	29.4118
DSCAM	0	genome.wustl.edu	37	21	41423955	41423955	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	41423955	41423955	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	silent	c.5115	p.T1705	0.843	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				133	0	0	69	33	32.3529
TRPM2	0	genome.wustl.edu	37	21	45811268	45811268	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	45811268	45811268	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	silent	c.1554	p.T518	0.018	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				179	0	0	70	36	33.9623
FAM207A	0	genome.wustl.edu	37	21	46387053	46387053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	46387053	46387053	G	A	SNP	FAM207A	ENST00000291634	human	ensembl	74_37	+1	known	missense	c.457	p.E153K	0.005	NULL	NULL	-	no_errors	FAM207A	HGNC	ENSG00000160256				57	0	0	23	14	37.8378
LSS	0	genome.wustl.edu	37	21	47648682	47648682	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	47648682	47648682	G	A	SNP	LSS	ENST00000472272	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LSS	HGNC	ENSG00000160285				19	0	0	9	5	35.7143
DGCR14	0	genome.wustl.edu	37	22	19130071	19130071	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	19130071	19130071	C	T	SNP	DGCR14	ENST00000252137	human	ensembl	74_37	-1	known	missense	c.380	p.R127H	0.000	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056				208	0	0	104	41	28.2759
CLTCL1	0	genome.wustl.edu	37	22	19263160	19263160	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	19263160	19263160	A	G	SNP	CLTCL1	ENST00000263200	human	ensembl	74_37	-1	known	missense	c.236	p.V79A	1.000	superfamily_Clathrin_H-chain_propeller_N,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371				17	0	0	7	3	30
UFD1L	0	genome.wustl.edu	37	22	19442297	19442297	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	19442297	19442297	C	T	SNP	UFD1L	ENST00000263202	human	ensembl	74_37	-1	known	missense	c.824	p.R275H	1.000	NULL	pfam_UFD1	-	no_errors	UFD1L	HGNC	ENSG00000070010				71	0	0	27	10	27.027
HIC2	0	genome.wustl.edu	37	22	21799284	21799284	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	21799284	21799284	C	T	SNP	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	silent	c.100	p.L34	1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				72	0	0	44	14	24.1379
PPM1F	0	genome.wustl.edu	37	22	22287763	22287763	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	22287763	22287763	C	A	SNP	PPM1F	ENST00000263212	human	ensembl	74_37	-1	known	missense	c.747	p.E249D	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1F	HGNC	ENSG00000100034				44	0	0	19	6	24
BMS1P20	0	genome.wustl.edu	37	22	22661258	22661258	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	22661258	22661258	C	T	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				70	0	0	41	11	21.1538
MMP11	0	genome.wustl.edu	37	22	24122599	24122599	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	24122599	24122599	C	T	SNP	MMP11	ENST00000215743	human	ensembl	74_37	+1	known	missense	c.392	p.A131V	0.669	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP11	HGNC	ENSG00000099953				81	0	0	41	16	28.0702
SMARCB1	0	genome.wustl.edu	37	22	24135751	24135751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	24135751	24135751	G	A	SNP	SMARCB1	ENST00000263121	human	ensembl	74_37	+1	known	missense	c.238	p.G80R	1.000	pirsf_SWI_SNF_chromatin_remodel_cplx	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	-	no_errors	SMARCB1	HGNC	ENSG00000099956				237	0	0	144	54	27.2727
HSCB	0	genome.wustl.edu	37	22	29141967	29141967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	29141967	29141967	C	T	SNP	HSCB	ENST00000216027	human	ensembl	74_37	+1	known	missense	c.539	p.A180V	0.033	pfam_HscB_oligo_C,superfamily_HscB_oligo_C,tigrfam_HscB	pfam_HscB_oligo_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HscB_oligo_C,tigrfam_HscB	-	no_errors	HSCB	HGNC	ENSG00000100209				60	0	0	35	9	20.4545
RHBDD3	0	genome.wustl.edu	37	22	29661578	29661578	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	29661578	29661578	G	T	SNP	RHBDD3	ENST00000216085	human	ensembl	74_37	-1	known	missense	c.38	p.A13E	0.060	NULL	pfam_Peptidase_S54_rhomboid_dom,superfamily_UBA-like	-	no_errors	RHBDD3	HGNC	ENSG00000100263				36	0	0	18	2	10
AP1B1	0	genome.wustl.edu	37	22	29752476	29752476	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	29752476	29752476	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	74_37	-1	known	nonsense	c.655	p.Q219*	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				61	0	0	35	10	22.2222
CCDC157	0	genome.wustl.edu	37	22	30772567	30772567	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	30772567	30772567	T	C	SNP	CCDC157	ENST00000338306	human	ensembl	74_37	+1	known	missense	c.2092	p.S698P	0.001	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC157	HGNC	ENSG00000187860				311	3	0.955414	204	11	5.11628
GAL3ST1	0	genome.wustl.edu	37	22	30951569	30951569	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	30951569	30951569	G	A	SNP	GAL3ST1	ENST00000338911	human	ensembl	74_37	-1	known	nonsense	c.643	p.R215*	1.000	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST1	HGNC	ENSG00000128242				116	0	0	65	22	25.2874
INPP5J	0	genome.wustl.edu	37	22	31530004	31530004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	31530004	31530004	C	T	SNP	INPP5J	ENST00000331075	human	ensembl	74_37	+1	known	missense	c.2620	p.R874C	1.000	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133				22	0	0	12	5	29.4118
MYH9	0	genome.wustl.edu	37	22	36684826	36684826	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	36684826	36684826	G	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.4717	p.L1573M	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				213	0	0	90	41	31.2977
SSTR3	0	genome.wustl.edu	37	22	37603060	37603060	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	37603060	37603060	G	A	SNP	SSTR3	ENST00000328544	human	ensembl	74_37	-1	known	silent	c.783	p.A261	0.838	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_3,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR3	HGNC	ENSG00000183473				113	1	0.877193	58	19	24.6753
ELFN2	0	genome.wustl.edu	37	22	37771425	37771425	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	37771425	37771425	C	T	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	silent	c.150	p.P50	0.031	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				63	0	0	28	14	33.3333
BAIAP2L2	0	genome.wustl.edu	37	22	38485118	38485118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	38485118	38485118	G	A	SNP	BAIAP2L2	ENST00000381669	human	ensembl	74_37	-1	known	missense	c.886	p.R296C	0.102	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L2	HGNC	ENSG00000128298				14	0	0	3	3	50
TNRC6B	0	genome.wustl.edu	37	22	40657921	40657921	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	40657921	40657921	C	T	SNP	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	silent	c.201	p.G67	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				35	0	0	15	4	21.0526
ZC3H7B	0	genome.wustl.edu	37	22	41723285	41723285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	41723285	41723285	C	T	SNP	ZC3H7B	ENST00000351589	human	ensembl	74_37	+1	known	missense	c.361	p.R121C	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Znf_CCCH,pfam_TPR_1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403				174	1	0.571429	80	30	27.2727
ACO2	0	genome.wustl.edu	37	22	41919894	41919894	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	41919894	41919894	G	A	SNP	ACO2	ENST00000216254	human	ensembl	74_37	+1	known	silent	c.1431	p.T477	0.801	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412				89	0	0	51	21	29.1667
MEI1	0	genome.wustl.edu	37	22	42095566	42095566	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	42095566	42095566	G	A	SNP	MEI1	ENST00000401548	human	ensembl	74_37	+1	known	silent	c.24	p.T8	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077				63	0	0	33	17	34
SCUBE1	0	genome.wustl.edu	37	22	43606145	43606145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	43606145	43606145	C	T	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	missense	c.2485	p.A829T	0.964	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				61	0	0	37	18	32.7273
SCUBE1	0	genome.wustl.edu	37	22	43606181	43606181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	43606181	43606181	C	T	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	missense	c.2449	p.D817N	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				57	0	0	34	14	29.1667
SAMM50	0	genome.wustl.edu	37	22	44392179	44392179	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	44392179	44392179	C	T	SNP	SAMM50	ENST00000493621	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAMM50	HGNC	ENSG00000100347				505	1	0.197628	320	70	17.9487
CELSR1	0	genome.wustl.edu	37	22	46785200	46785200	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	46785200	46785200	G	A	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.6542	p.A2181V	0.040	pfam_DUF3497	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				88	0	0	64	5	7.24638
GRAMD4	0	genome.wustl.edu	37	22	47054158	47054158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	47054158	47054158	C	T	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	missense	c.358	p.R120W	0.897	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240				41	0	0	14	7	33.3333
ZBED4	0	genome.wustl.edu	37	22	50279583	50279583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	50279583	50279583	G	A	SNP	ZBED4	ENST00000216268	human	ensembl	74_37	+1	known	missense	c.2273	p.R758Q	0.809	superfamily_RNaseH-like_dom	pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426				41	0	0	17	10	37.037
HDAC10	0	genome.wustl.edu	37	22	50686206	50686206	+	Splice_Site	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	50686206	50686206	C	A	SNP	HDAC10	ENST00000216271	human	ensembl	74_37	-1	known	splice_site	c.1338-1	e14-1	0.963	-	-	-	no_errors	HDAC10	HGNC	ENSG00000100429				64	0	0	26	15	36.5854
MAPK12	0	genome.wustl.edu	37	22	50693747	50693747	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	50693747	50693747	C	T	SNP	MAPK12	ENST00000215659	human	ensembl	74_37	-1	known	silent	c.903	p.T301	0.008	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_p38	-	no_errors	MAPK12	HGNC	ENSG00000188130				164	0	0	71	23	24.4681
PLXNB2	0	genome.wustl.edu	37	22	50716356	50716356	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	50716356	50716356	G	A	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	silent	c.4974	p.F1658	0.987	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				99	0	0	27	16	37.2093
PLXNB2	0	genome.wustl.edu	37	22	50719833	50719833	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	50719833	50719833	G	A	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	silent	c.3618	p.I1206	0.007	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				30	0	0	16	5	23.8095
PPP6R2	0	genome.wustl.edu	37	22	50854560	50854560	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	50854560	50854560	T	C	SNP	PPP6R2	ENST00000216061	human	ensembl	74_37	+1	known	silent	c.592	p.L198	0.742	pfam_SAPS,superfamily_ARM-type_fold	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R2	HGNC	ENSG00000100239				56	0	0	47	12	20.339
SBF1	0	genome.wustl.edu	37	22	50885653	50885653	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	50885653	50885653	C	T	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.5600	p.R1867H	0.998	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				50	0	0	17	11	39.2857
MAPK8IP2	0	genome.wustl.edu	37	22	51045086	51045086	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	51045086	51045086	A	G	SNP	MAPK8IP2	ENST00000329492	human	ensembl	74_37	+1	known	missense	c.2122	p.I708V	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP2	HGNC	ENSG00000008735				10	0	0	8	2	20
RPL23AP82	0	genome.wustl.edu	37	22	51237266	51237266	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	51237266	51237266	G	A	SNP	RPL23AP82	ENST00000462238	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC002055.4	Clone_based_vega_gene	ENSG00000184319				46	0	0	26	10	27.7778
ATP2B2	0	genome.wustl.edu	37	3	10382254	10382254	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	10382254	10382254	C	T	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	missense	c.3052	p.G1018S	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				118	0	0	60	36	37.5
ATP2B2	0	genome.wustl.edu	37	3	10382279	10382279	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	10382279	10382279	G	A	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	silent	c.3027	p.N1009	0.994	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				154	0	0	88	30	25.4237
SIDT1	0	genome.wustl.edu	37	3	113331030	113331030	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	113331030	113331030	G	A	SNP	SIDT1	ENST00000393830	human	ensembl	74_37	+1	known	missense	c.1955	p.R652H	1.000	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858				38	0	0	16	13	44.8276
IGSF11	0	genome.wustl.edu	37	3	118621386	118621386	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	118621386	118621386	C	T	SNP	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	missense	c.1277	p.R426Q	1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847				222	1	0.44843	140	43	23.4973
POLQ	0	genome.wustl.edu	37	3	121260276	121260276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	121260276	121260276	G	A	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	missense	c.394	p.R132W	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				245	0	0	162	9	5.26316
KALRN	0	genome.wustl.edu	37	3	124393214	124393214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	124393214	124393214	G	A	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.6946	p.D2316N	0.944	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				138	0	0	85	19	18.2692
ITGB5	0	genome.wustl.edu	37	3	124515302	124515302	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	124515302	124515302	C	A	SNP	ITGB5	ENST00000296181	human	ensembl	74_37	-1	known	missense	c.1626	p.K542N	1.000	pirsf_Integrin_bsu,pfam_EGF_extracell	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	-	no_errors	ITGB5	HGNC	ENSG00000082781				156	0	0	108	31	22.3022
HEG1	0	genome.wustl.edu	37	3	124716537	124716537	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	124716537	124716537	G	A	SNP	HEG1	ENST00000311127	human	ensembl	74_37	-1	known	silent	c.3648	p.C1216	1.000	smart_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706				39	0	0	11	6	35.2941
UROC1	0	genome.wustl.edu	37	3	126207085	126207085	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	126207085	126207085	G	A	SNP	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	silent	c.1746	p.R582	0.021	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				182	0	0	123	34	21.6561
TPRA1	0	genome.wustl.edu	37	3	127292484	127292484	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	127292484	127292484	C	T	SNP	TPRA1	ENST00000296210	human	ensembl	74_37	-1	known	missense	c.838	p.E280K	0.963	NULL	pfam_Uncharacterised_TM-40	-	no_errors	TPRA1	HGNC	ENSG00000163870				94	0	0	41	23	35.9375
MCM2	0	genome.wustl.edu	37	3	127323819	127323819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	127323819	127323819	G	A	SNP	MCM2	ENST00000265056	human	ensembl	74_37	+1	known	missense	c.493	p.E165K	0.999	pfam_MCM2	pfam_MCM_DNA-dep_ATPase,pfam_MCM2,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM2,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM2	HGNC	ENSG00000073111				46	0	0	25	9	26.4706
KIAA1257	0	genome.wustl.edu	37	3	128690075	128690075	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	128690075	128690075	C	T	SNP	KIAA1257	ENST00000265068	human	ensembl	74_37	-1	known	missense	c.1223	p.R408Q	0.000	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656				23	0	0	13	9	40.9091
CLSTN2	0	genome.wustl.edu	37	3	140178491	140178491	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	140178491	140178491	G	A	SNP	CLSTN2	ENST00000458420	human	ensembl	74_37	+1	known	missense	c.1102	p.D368N	0.986	superfamily_ConA-like_lec_gl_sf	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258				51	0	0	22	6	21.4286
RASA2	0	genome.wustl.edu	37	3	141295906	141295906	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	141295906	141295906	C	T	SNP	RASA2	ENST00000452898	human	ensembl	74_37	+1	known	silent	c.1548	p.A516	0.996	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_dom,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA2	HGNC	ENSG00000155903				163	0	0	93	31	25
SLC6A6	0	genome.wustl.edu	37	3	14523278	14523278	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	14523278	14523278	C	A	SNP	SLC6A6	ENST00000360861	human	ensembl	74_37	+1	known	missense	c.1651	p.L551I	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_taurine	-	no_errors	SLC6A6	HGNC	ENSG00000131389				105	0	0	64	14	17.9487
ZIC1	0	genome.wustl.edu	37	3	147130352	147130352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	147130352	147130352	G	A	SNP	ZIC1	ENST00000282928	human	ensembl	74_37	+1	known	missense	c.1030	p.A344T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC1	HGNC	ENSG00000152977				93	0	0	42	25	37.3134
HLTF	0	genome.wustl.edu	37	3	148763957	148763957	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	148763957	148763957	C	T	SNP	HLTF	ENST00000310053	human	ensembl	74_37	-1	known	missense	c.1982	p.R661H	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HLTF	HGNC	ENSG00000071794				27	0	0	12	7	36.8421
ZFYVE20	0	genome.wustl.edu	37	3	15123964	15123964	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	15123964	15123964	G	A	SNP	ZFYVE20	ENST00000253699	human	ensembl	74_37	-1	known	silent	c.750	p.R250	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381				84	0	0	72	4	5.26316
ZFYVE20	0	genome.wustl.edu	37	3	15137584	15137584	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	15137584	15137584	A	C	SNP	ZFYVE20	ENST00000253699	human	ensembl	74_37	-1	known	missense	c.44	p.L15R	0.998	pfscan_Znf_C2H2	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381				72	0	0	45	10	18.1818
SUCNR1	0	genome.wustl.edu	37	3	151598716	151598716	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	151598716	151598716	C	T	SNP	SUCNR1	ENST00000362032	human	ensembl	74_37	+1	known	nonsense	c.385	p.R129*	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	SUCNR1	HGNC	ENSG00000198829				63	0	0	41	8	16.3265
TIPARP	0	genome.wustl.edu	37	3	156396200	156396200	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	156396200	156396200	C	T	SNP	TIPARP	ENST00000295924	human	ensembl	74_37	+1	known	silent	c.714	p.N238	0.990	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TIPARP	HGNC	ENSG00000163659				140	0	0	71	39	35.4545
SMC4	0	genome.wustl.edu	37	3	160132162	160132162	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	160132162	160132162	A	G	SNP	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	missense	c.1129	p.N377D	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				55	0	0	21	4	16
MECOM	0	genome.wustl.edu	37	3	168838893	168838893	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	168838893	168838893	C	T	SNP	MECOM	ENST00000494292	human	ensembl	74_37	-1	known	silent	c.1083	p.S361	0.990	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276				77	0	0	40	15	27.2727
PHC3	0	genome.wustl.edu	37	3	169863295	169863295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	169863295	169863295	G	A	SNP	PHC3	ENST00000479467	human	ensembl	74_37	-1	known	missense	c.571	p.R191C	1.000	NULL	NULL	-	no_errors	PHC3	HGNC	ENSG00000173889				70	0	0	44	14	24.1379
ZMAT3	0	genome.wustl.edu	37	3	178748762	178748762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	178748762	178748762	C	T	SNP	ZMAT3	ENST00000311417	human	ensembl	74_37	-1	known	missense	c.296	p.R99Q	1.000	smart_Znf_U1	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT3	HGNC	ENSG00000172667				62	0	0	34	12	26.087
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				52	0	0	43	23	34.8485
FXR1	0	genome.wustl.edu	37	3	180680862	180680862	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	180680862	180680862	T	C	SNP	FXR1	ENST00000357559	human	ensembl	74_37	+1	known	silent	c.1182	p.N394	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,superfamily_NA-bd_OB-fold,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416				88	0	0	44	17	27.8689
PARL	0	genome.wustl.edu	37	3	183551589	183551589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	183551589	183551589	C	T	SNP	PARL	ENST00000317096	human	ensembl	74_37	-1	known	missense	c.853	p.A285T	1.000	pfam_Peptidase_S54_rhomboid_dom	pfam_Peptidase_S54_rhomboid_dom	-	no_errors	PARL	HGNC	ENSG00000175193				79	0	0	42	26	38.2353
AP2M1	0	genome.wustl.edu	37	3	183900562	183900562	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	183900562	183900562	G	A	SNP	AP2M1	ENST00000292807	human	ensembl	74_37	+1	known	missense	c.1079	p.G360D	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP2M1	HGNC	ENSG00000161203				56	0	0	42	7	14.2857
EIF4G1	0	genome.wustl.edu	37	3	184049755	184049755	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	184049755	184049755	A	G	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	missense	c.4520	p.D1507G	1.000	superfamily_ARM-type_fold	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				71	0	0	37	11	22.9167
FAM131A	0	genome.wustl.edu	37	3	184062581	184062581	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	184062581	184062581	G	A	SNP	FAM131A	ENST00000383847	human	ensembl	74_37	+1	known	silent	c.924	p.S308	0.992	NULL	NULL	-	no_errors	FAM131A	HGNC	ENSG00000175182				117	0	0	83	6	6.74157
CHRD	0	genome.wustl.edu	37	3	184104496	184104496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	184104496	184104496	C	T	SNP	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	missense	c.2149	p.R717C	1.000	pfam_VWF_C,smart_VWF_C,pirsf_Chordin,pfscan_VWF_C	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539				26	0	0	15	3	16.6667
C3orf65	0	genome.wustl.edu	37	3	185434497	185434497	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	185434497	185434497	T	C	SNP	C3orf65	ENST00000296270	human	ensembl	74_37	+1	known	silent	c.330	p.H110	0.000	NULL	NULL	-	no_errors	C3orf65	HGNC	ENSG00000163915				58	0	0	33	11	25
TRA2B	0	genome.wustl.edu	37	3	185643365	185643365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	185643365	185643365	G	A	SNP	TRA2B	ENST00000453386	human	ensembl	74_37	-1	known	missense	c.220	p.R74C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2B	HGNC	ENSG00000136527				82	0	0	48	17	26.1538
FGF12	0	genome.wustl.edu	37	3	192125845	192125845	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	192125845	192125845	G	A	SNP	FGF12	ENST00000454309	human	ensembl	74_37	-1	known	silent	c.168	p.S56	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF12	HGNC	ENSG00000114279				233	0	0	133	69	34.1584
ATP13A4	0	genome.wustl.edu	37	3	193151640	193151640	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	193151640	193151640	C	T	SNP	ATP13A4	ENST00000342695	human	ensembl	74_37	-1	known	missense	c.2836	p.V946I	0.962	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A4	HGNC	ENSG00000127249				57	0	0	36	12	25
CPN2	0	genome.wustl.edu	37	3	194062823	194062823	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	194062823	194062823	G	A	SNP	CPN2	ENST00000323830	human	ensembl	74_37	-1	known	silent	c.609	p.N203	0.088	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CPN2	HGNC	ENSG00000178772				47	0	0	16	15	48.3871
GP5	0	genome.wustl.edu	37	3	194118638	194118638	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	194118638	194118638	T	C	SNP	GP5	ENST00000323007	human	ensembl	74_37	-1	known	missense	c.374	p.E125G	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732				89	0	0	53	23	30.2632
ACAP2	0	genome.wustl.edu	37	3	195000079	195000079	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	195000079	195000079	T	C	SNP	ACAP2	ENST00000326793	human	ensembl	74_37	-1	known	missense	c.2315	p.Q772R	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP2	HGNC	ENSG00000114331				62	0	0	41	3	6.81818
MUC20	0	genome.wustl.edu	37	3	195447871	195447871	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	195447871	195447871	C	T	SNP	MUC20	ENST00000480350	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MUC20	HGNC	ENSG00000176945				9	0	0	4	3	42.8571
RNF168	0	genome.wustl.edu	37	3	196210722	196210722	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	196210722	196210722	T	C	SNP	RNF168	ENST00000318037	human	ensembl	74_37	-1	known	missense	c.599	p.N200S	0.254	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF168	HGNC	ENSG00000163961				177	1	0.561798	71	56	44.0945
NEK10	0	genome.wustl.edu	37	3	27161345	27161345	+	Silent	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	27161345	27161345	A	T	SNP	NEK10	ENST00000383771	human	ensembl	74_37	-1	known	silent	c.1173	p.S391	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK10	HGNC	ENSG00000163491				67	0	0	44	23	34.3284
TRIM71	0	genome.wustl.edu	37	3	32860341	32860341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	32860341	32860341	G	A	SNP	TRIM71	ENST00000383763	human	ensembl	74_37	+1	known	missense	c.769	p.G257R	0.990	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557				54	0	0	13	8	38.0952
TRIM71	0	genome.wustl.edu	37	3	32932739	32932739	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	32932739	32932739	G	A	SNP	TRIM71	ENST00000383763	human	ensembl	74_37	+1	known	silent	c.2043	p.T681	0.862	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557				73	0	0	34	18	34.6154
GLB1	0	genome.wustl.edu	37	3	33114135	33114135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	33114135	33114135	C	T	SNP	GLB1	ENST00000445488	human	ensembl	74_37	-1	known	missense	c.290	p.R97H	1.000	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1	HGNC	ENSG00000170266				77	0	0	68	11	13.9241
STAC	0	genome.wustl.edu	37	3	36485095	36485095	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	36485095	36485095	G	T	SNP	STAC	ENST00000273183	human	ensembl	74_37	+1	known	missense	c.351	p.K117N	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	STAC	HGNC	ENSG00000144681				150	0	0	79	29	26.8519
ITGA9	0	genome.wustl.edu	37	3	37560809	37560809	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	37560809	37560809	T	C	SNP	ITGA9	ENST00000264741	human	ensembl	74_37	+1	known	silent	c.1200	p.H400	0.104	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668				47	0	0	33	16	32.6531
VILL	0	genome.wustl.edu	37	3	38035202	38035202	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	38035202	38035202	C	T	SNP	VILL	ENST00000283713	human	ensembl	74_37	+1	known	silent	c.39	p.G13	0.820	smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				50	0	0	28	12	30
XIRP1	0	genome.wustl.edu	37	3	39228905	39228905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	39228905	39228905	G	A	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	missense	c.2032	p.R678W	0.001	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				43	0	0	9	7	43.75
RPL14	0	genome.wustl.edu	37	3	40503441	40503441	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	40503441	40503441	A	G	SNP	RPL14	ENST00000338970	human	ensembl	74_37	+1	known	missense	c.366	p.I122M	1.000	pfam_Ribosomal_L14	pfam_Ribosomal_L14	-	no_errors	RPL14	HGNC	ENSG00000188846				42	0	0	10	7	41.1765
TRAK1	0	genome.wustl.edu	37	3	42244237	42244237	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	42244237	42244237	G	A	SNP	TRAK1	ENST00000396175	human	ensembl	74_37	+1	known	silent	c.1563	p.P521	0.996	pfam_Traffickng_kinesin-bd_prot_dom	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606				50	0	0	18	15	45.4545
NKTR	0	genome.wustl.edu	37	3	42684075	42684075	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	42684075	42684075	T	C	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	missense	c.4129	p.Y1377H	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				83	0	0	55	13	19.1176
CCDC13	0	genome.wustl.edu	37	3	42798652	42798652	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	42798652	42798652	G	A	SNP	CCDC13	ENST00000310232	human	ensembl	74_37	-1	known	silent	c.276	p.D92	0.993	NULL	superfamily_Prefoldin	-	no_errors	CCDC13	HGNC	ENSG00000244607				148	0	0	78	36	31.5789
SNRK	0	genome.wustl.edu	37	3	43390026	43390026	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	43390026	43390026	G	A	SNP	SNRK	ENST00000296088	human	ensembl	74_37	+1	known	missense	c.2275	p.A759T	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SNRK	HGNC	ENSG00000163788				34	0	0	13	6	31.5789
TGM4	0	genome.wustl.edu	37	3	44948665	44948665	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	44948665	44948665	A	G	SNP	TGM4	ENST00000296125	human	ensembl	74_37	+1	known	missense	c.1300	p.I434V	1.000	NULL	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM4	HGNC	ENSG00000163810				176	0	0	148	13	8.07453
LARS2	0	genome.wustl.edu	37	3	45436077	45436077	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	45436077	45436077	G	A	SNP	LARS2	ENST00000265537	human	ensembl	74_37	+1	known	silent	c.132	p.T44	0.062	NULL	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Leu-tRNA-ligase_bac/mito,tigrfam_Leu-tRNA-ligase_bac/mito	-	no_errors	LARS2	HGNC	ENSG00000011376				95	0	0	57	29	33.7209
NBEAL2	0	genome.wustl.edu	37	3	47033984	47033984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	47033984	47033984	C	T	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.1052	p.A351V	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				20	0	0	7	6	46.1538
PTPN23	0	genome.wustl.edu	37	3	47450550	47450550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	47450550	47450550	G	A	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	missense	c.1615	p.A539T	1.000	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				135	0	0	55	24	30.3797
PTPN23	0	genome.wustl.edu	37	3	47450718	47450718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	47450718	47450718	C	T	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	missense	c.1708	p.R570C	1.000	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				82	0	0	63	5	7.35294
CELSR3	0	genome.wustl.edu	37	3	48691723	48691723	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	48691723	48691723	T	C	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	silent	c.5151	p.A1717	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				36	0	0	27	3	10
LAMB2	0	genome.wustl.edu	37	3	49168865	49168865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	49168865	49168865	C	T	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	missense	c.659	p.R220H	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				107	1	0.925926	40	14	25.9259
C3orf62	0	genome.wustl.edu	37	3	49308822	49308822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	49308822	49308822	C	T	SNP	C3orf62	ENST00000343010	human	ensembl	74_37	-1	known	missense	c.595	p.E199K	0.818	NULL	NULL	-	no_errors	C3orf62	HGNC	ENSG00000188315				108	1	0.917431	38	22	36.6667
IP6K1	0	genome.wustl.edu	37	3	49765665	49765665	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	49765665	49765665	G	A	SNP	IP6K1	ENST00000321599	human	ensembl	74_37	-1	known	silent	c.663	p.C221	0.977	pfam_IPK	pfam_IPK	-	no_errors	IP6K1	HGNC	ENSG00000176095				101	0	0	51	22	30.137
SEMA3F	0	genome.wustl.edu	37	3	50212595	50212595	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	50212595	50212595	C	T	SNP	SEMA3F	ENST00000002829	human	ensembl	74_37	+1	known	missense	c.523	p.R175C	0.766	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3F	HGNC	ENSG00000001617				15	0	0	15	6	28.5714
SEMA3F	0	genome.wustl.edu	37	3	50219760	50219760	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	50219760	50219760	T	C	SNP	SEMA3F	ENST00000002829	human	ensembl	74_37	+1	known	silent	c.687	p.T229	0.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3F	HGNC	ENSG00000001617				163	0	0	100	44	30.5556
LSMEM2	0	genome.wustl.edu	37	3	50324596	50324596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	50324596	50324596	G	A	SNP	LSMEM2	ENST00000316436	human	ensembl	74_37	+1	known	missense	c.458	p.R153Q	0.932	NULL	NULL	-	no_errors	LSMEM2	HGNC	ENSG00000179564				58	0	0	29	12	29.2683
HYAL3	0	genome.wustl.edu	37	3	50330806	50330806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	50330806	50330806	C	T	SNP	HYAL3	ENST00000336307	human	ensembl	74_37	-1	known	missense	c.1125	p.M375I	0.070	pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL3	HGNC	ENSG00000186792				59	0	0	31	8	20.5128
RAD54L2	0	genome.wustl.edu	37	3	51664313	51664313	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	51664313	51664313	C	T	SNP	RAD54L2	ENST00000409535	human	ensembl	74_37	+1	known	silent	c.507	p.D169	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080				97	0	0	63	27	30
TWF2	0	genome.wustl.edu	37	3	52263163	52263163	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	52263163	52263163	G	T	SNP	TWF2	ENST00000305533	human	ensembl	74_37	-1	known	missense	c.937	p.H313N	1.000	smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	TWF2	HGNC	ENSG00000247596				113	0	0	68	19	21.8391
SEMA3G	0	genome.wustl.edu	37	3	52469715	52469715	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	52469715	52469715	C	T	SNP	SEMA3G	ENST00000231721	human	ensembl	74_37	-1	known	silent	c.2253	p.R751	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3G	HGNC	ENSG00000010319				145	0	0	77	18	18.9474
SEMA3G	0	genome.wustl.edu	37	3	52475046	52475046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	52475046	52475046	G	A	SNP	SEMA3G	ENST00000231721	human	ensembl	74_37	-1	known	missense	c.832	p.R278W	0.997	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3G	HGNC	ENSG00000010319				58	0	0	32	13	28.8889
ACTR8	0	genome.wustl.edu	37	3	53913991	53913991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	53913991	53913991	C	T	SNP	ACTR8	ENST00000335754	human	ensembl	74_37	-1	known	missense	c.269	p.S90N	0.993	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR8	HGNC	ENSG00000113812				139	0	0	92	21	18.5841
FAM208A	0	genome.wustl.edu	37	3	56657581	56657581	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	56657581	56657581	G	A	SNP	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	silent	c.4314	p.N1438	0.999	NULL	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946				73	0	0	39	12	23.5294
APPL1	0	genome.wustl.edu	37	3	57283436	57283436	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	57283436	57283436	G	A	SNP	APPL1	ENST00000288266	human	ensembl	74_37	+1	known	silent	c.912	p.T304	0.764	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PTB/PI_dom,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom	-	no_errors	APPL1	HGNC	ENSG00000157500				97	0	0	56	26	31.7073
FLNB	0	genome.wustl.edu	37	3	58097960	58097960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	58097960	58097960	C	T	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	missense	c.2660	p.P887L	0.991	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				118	0	0	68	33	32.6733
PXK	0	genome.wustl.edu	37	3	58382815	58382815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	58382815	58382815	C	T	SNP	PXK	ENST00000356151	human	ensembl	74_37	+1	known	missense	c.872	p.A291V	0.997	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	pfam_Phox,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Phox,superfamily_Kinase-like_dom,smart_Phox,pfscan_Phox,pfscan_WH2_dom,pfscan_Prot_kinase_dom	-	no_errors	PXK	HGNC	ENSG00000168297				129	0	0	114	7	5.78512
PTPRG	0	genome.wustl.edu	37	3	62189010	62189010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	62189010	62189010	C	T	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.1541	p.T514M	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				67	0	0	28	10	26.3158
CADPS	0	genome.wustl.edu	37	3	62535607	62535607	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	62535607	62535607	G	T	SNP	CADPS	ENST00000383710	human	ensembl	74_37	-1	known	missense	c.1937	p.P646H	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618				110	0	0	72	4	5.26316
PRICKLE2	0	genome.wustl.edu	37	3	64084973	64084973	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	64084973	64084973	G	A	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	silent	c.2289	p.D763	0.940	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637				39	0	0	27	6	18.1818
GRM7	0	genome.wustl.edu	37	3	6903441	6903441	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	6903441	6903441	C	T	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	silent	c.366	p.F122	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				61	0	0	23	14	37.8378
MITF	0	genome.wustl.edu	37	3	69987151	69987151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	69987151	69987151	C	T	SNP	MITF	ENST00000448226	human	ensembl	74_37	+1	known	missense	c.533	p.P178L	1.000	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MITF	HGNC	ENSG00000187098				84	0	0	56	16	22.2222
ROBO2	0	genome.wustl.edu	37	3	77617524	77617524	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	77617524	77617524	T	C	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.1910	p.V637A	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				129	0	0	84	17	16.8317
ROBO1	0	genome.wustl.edu	37	3	78734947	78734947	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	78734947	78734947	A	C	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.1291	p.L431V	0.971	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				24	0	0	11	11	50
CAV3	0	genome.wustl.edu	37	3	8787245	8787245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	8787245	8787245	G	A	SNP	CAV3	ENST00000343849	human	ensembl	74_37	+1	known	missense	c.148	p.G50S	1.000	pfam_Caveolin	pfam_Caveolin	-	no_errors	CAV3	HGNC	ENSG00000182533				47	0	0	30	9	23.0769
MTTP	0	genome.wustl.edu	37	4	100512480	100512480	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	100512480	100512480	C	T	SNP	MTTP	ENST00000265517	human	ensembl	74_37	+1	known	missense	c.590	p.A197V	0.001	pfam_Lipid_transpt_N,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823				61	0	0	30	13	30.2326
TBCK	0	genome.wustl.edu	37	4	107154787	107154787	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	107154787	107154787	G	A	SNP	TBCK	ENST00000273980	human	ensembl	74_37	-1	known	silent	c.1470	p.Y490	0.997	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rhodanese-like_dom,superfamily_Kinase-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Rab-GTPase-TBC_dom,smart_Rhodanese-like_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Prot_kinase_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBCK	HGNC	ENSG00000145348				40	0	0	19	11	36.6667
RRH	0	genome.wustl.edu	37	4	110765294	110765294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	110765294	110765294	G	A	SNP	RRH	ENST00000317735	human	ensembl	74_37	+1	known	missense	c.955	p.V319M	0.001	prints_Peropsin	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Peropsin,prints_GPCR_Rhodpsn	-	no_errors	RRH	HGNC	ENSG00000180245				120	0	0	78	31	28.4404
EGF	0	genome.wustl.edu	37	4	110866263	110866263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	110866263	110866263	C	T	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	missense	c.772	p.R258C	0.001	pirsf_Pro-epidermal_GF	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798				42	0	0	29	8	21.6216
C4orf21	0	genome.wustl.edu	37	4	113544979	113544979	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	113544979	113544979	G	A	SNP	C4orf21	ENST00000505019	human	ensembl	74_37	-1	known	silent	c.156	p.C52	0.290	pfam_DUF2439	pfam_DUF2439,pfam_Znf_GRF,superfamily_P-loop_NTPase	-	no_errors	C4orf21	HGNC	ENSG00000138658				31	0	0	12	5	29.4118
ANK2	0	genome.wustl.edu	37	4	114158328	114158328	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	114158328	114158328	G	T	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.669	p.K223N	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				104	0	0	41	22	34.9206
EXOSC9	0	genome.wustl.edu	37	4	122737549	122737549	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	122737549	122737549	T	C	SNP	EXOSC9	ENST00000379663	human	ensembl	74_37	+1	known	silent	c.1233	p.S411	1.000	NULL	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737				57	0	0	29	18	38.2979
CTBP1	0	genome.wustl.edu	37	4	1231955	1231955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	1231955	1231955	G	A	SNP	CTBP1	ENST00000510568	human	ensembl	74_37	-1	putative	missense	c.178	p.R60C	0.000	NULL	NULL	-	no_errors	CTBP1	HGNC	ENSG00000159692				127	0	0	66	23	25.8427
FAT4	0	genome.wustl.edu	37	4	126336508	126336508	+	Silent	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	126336508	126336508	T	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.6390	p.G2130	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				67	0	0	51	16	23.8806
FAT4	0	genome.wustl.edu	37	4	126336623	126336623	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	126336623	126336623	A	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.6505	p.T2169A	0.893	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				127	0	0	74	15	16.8539
MFSD8	0	genome.wustl.edu	37	4	128842780	128842780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	128842780	128842780	C	T	SNP	MFSD8	ENST00000296468	human	ensembl	74_37	-1	known	missense	c.1249	p.A417T	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD8	HGNC	ENSG00000164073				48	0	0	23	13	36.1111
MFSD8	0	genome.wustl.edu	37	4	128863292	128863292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	128863292	128863292	G	A	SNP	MFSD8	ENST00000296468	human	ensembl	74_37	-1	known	missense	c.461	p.S154L	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD8	HGNC	ENSG00000164073				132	0	0	70	17	19.5402
MAEA	0	genome.wustl.edu	37	4	1309205	1309205	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	1309205	1309205	C	T	SNP	MAEA	ENST00000303400	human	ensembl	74_37	+1	known	silent	c.273	p.A91	0.001	NULL	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MAEA	HGNC	ENSG00000090316				89	0	0	44	17	27.8689
MAEA	0	genome.wustl.edu	37	4	1321484	1321484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	1321484	1321484	G	A	SNP	MAEA	ENST00000303400	human	ensembl	74_37	+1	known	missense	c.649	p.A217T	1.000	smart_CRA_dom	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MAEA	HGNC	ENSG00000090316				57	0	0	29	10	25.641
BOD1L1	0	genome.wustl.edu	37	4	13600863	13600863	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	13600863	13600863	G	A	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.7661	p.A2554V	0.001	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				20	0	0	11	2	15.3846
BOD1L1	0	genome.wustl.edu	37	4	13604573	13604573	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	13604573	13604573	G	T	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	silent	c.3951	p.T1317	0.011	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				89	0	0	53	11	17.1875
SETD7	0	genome.wustl.edu	37	4	140454490	140454490	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	140454490	140454490	G	T	SNP	SETD7	ENST00000406354	human	ensembl	74_37	-1	putative	missense	c.149	p.P50H	0.991	NULL	NULL	-	no_errors	SETD7	HGNC	ENSG00000145391				23	0	0	8	13	61.9048
TBC1D9	0	genome.wustl.edu	37	4	141598220	141598220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	141598220	141598220	C	T	SNP	TBC1D9	ENST00000442267	human	ensembl	74_37	-1	known	missense	c.887	p.R296H	1.000	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436				150	0	0	91	33	26.6129
ANAPC10	0	genome.wustl.edu	37	4	145916685	145916685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	145916685	145916685	C	T	SNP	ANAPC10	ENST00000309439	human	ensembl	74_37	-1	known	missense	c.398	p.R133H	1.000	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,pirsf_APC_su10	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,pirsf_APC_su10	-	no_errors	ANAPC10	HGNC	ENSG00000164162				96	0	0	55	22	28.5714
ABCE1	0	genome.wustl.edu	37	4	146041302	146041302	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	146041302	146041302	A	T	SNP	ABCE1	ENST00000296577	human	ensembl	74_37	+1	known	missense	c.1141	p.N381Y	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	-	no_errors	ABCE1	HGNC	ENSG00000164163				52	0	0	21	11	34.375
ZNF827	0	genome.wustl.edu	37	4	146824250	146824250	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	146824250	146824250	A	G	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	missense	c.161	p.L54S	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612				83	0	0	51	13	20.3125
NR3C2	0	genome.wustl.edu	37	4	149356399	149356399	+	Silent	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	149356399	149356399	C	A	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	silent	c.1614	p.S538	0.002	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623				75	0	0	41	14	25.4545
SH3D19	0	genome.wustl.edu	37	4	152096013	152096013	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	152096013	152096013	G	A	SNP	SH3D19	ENST00000304527	human	ensembl	74_37	-1	known	missense	c.503	p.P168L	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686				350	0	0	189	86	31.2727
FBXW7	0	genome.wustl.edu	37	4	153244281	153244281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	153244281	153244281	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	missense	c.1876	p.A626T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				33	0	0	23	8	25.8065
FBXW7	0	genome.wustl.edu	37	4	153258983	153258983	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	153258983	153258983	G	A	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	nonsense	c.832	p.R278*	0.997	superfamily_F-box_dom,pfscan_F-box_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				74	0	0	31	10	24.3902
CD38	0	genome.wustl.edu	37	4	15780067	15780067	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	15780067	15780067	C	T	SNP	CD38	ENST00000226279	human	ensembl	74_37	+1	known	silent	c.30	p.S10	0.033	NULL	pfam_ADP-ribosyl_cyclase	-	no_errors	CD38	HGNC	ENSG00000004468				155	0	0	73	19	20.6522
FSTL5	0	genome.wustl.edu	37	4	162307362	162307362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	162307362	162307362	G	A	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.2081	p.T694M	0.897	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				78	0	0	59	15	20.2703
DDX60L	0	genome.wustl.edu	37	4	169317201	169317201	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	169317201	169317201	A	G	SNP	DDX60L	ENST00000260184	human	ensembl	74_37	-1	known	missense	c.3566	p.L1189P	0.005	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381				26	0	0	18	6	25
TACC3	0	genome.wustl.edu	37	4	1730104	1730104	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	1730104	1730104	C	T	SNP	TACC3	ENST00000313288	human	ensembl	74_37	+1	known	silent	c.975	p.G325	0.000	NULL	pfam_TACC	-	no_errors	TACC3	HGNC	ENSG00000013810				46	0	0	22	10	31.25
GALNTL6	0	genome.wustl.edu	37	4	173734826	173734826	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	173734826	173734826	T	A	SNP	GALNTL6	ENST00000506823	human	ensembl	74_37	+1	known	missense	c.875	p.I292N	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473				67	0	0	33	11	25
TENM3	0	genome.wustl.edu	37	4	183714319	183714319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	183714319	183714319	G	A	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.6494	p.S2165N	0.998	superfamily_Cyt_c-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				159	0	0	47	35	42.6829
TRAPPC11	0	genome.wustl.edu	37	4	184585065	184585065	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	184585065	184585065	G	A	SNP	TRAPPC11	ENST00000334690	human	ensembl	74_37	+1	known	silent	c.45	p.R15	0.998	NULL	pfam_Foie-gras_1,pfam_DUF1683_C	-	no_errors	TRAPPC11	HGNC	ENSG00000168538				64	0	0	22	23	51.1111
IRF2	0	genome.wustl.edu	37	4	185350182	185350182	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	185350182	185350182	C	A	SNP	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	nonsense	c.37	p.E13*	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				99	0	0	37	23	38.3333
ACSL1	0	genome.wustl.edu	37	4	185678331	185678331	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	185678331	185678331	C	T	SNP	ACSL1	ENST00000281455	human	ensembl	74_37	-1	known	missense	c.2045	p.R682Q	0.673	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL1	HGNC	ENSG00000151726				111	0	0	30	22	42.3077
FAT1	0	genome.wustl.edu	37	4	187510153	187510153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	187510153	187510153	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.13360	p.E4454K	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				345	0	0	227	97	29.9383
FAT1	0	genome.wustl.edu	37	4	187524086	187524086	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	187524086	187524086	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.11453	p.C3818Y	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				85	0	0	44	20	31.25
FAT1	0	genome.wustl.edu	37	4	187557823	187557823	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	187557823	187557823	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.3888	p.E1296	0.879	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				292	0	0	187	45	19.3966
TRIML1	0	genome.wustl.edu	37	4	189064957	189064957	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	189064957	189064957	C	T	SNP	TRIML1	ENST00000507581	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIML1	HGNC	ENSG00000184108				197	0	0	105	20	16
WHSC1	0	genome.wustl.edu	37	4	1955098	1955098	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	1955098	1955098	C	T	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	missense	c.2185	p.R729C	1.000	smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_RING	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				160	0	0	81	39	32.5
ZCCHC4	0	genome.wustl.edu	37	4	25314435	25314435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	25314435	25314435	G	A	SNP	ZCCHC4	ENST00000302874	human	ensembl	74_37	+1	known	missense	c.4	p.A2T	1.000	NULL	pfam_Znf_GRF,pfam_N6_adenine_Mtase-rel_euk,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZCCHC4	HGNC	ENSG00000168228				210	0	0	102	29	22.1374
ANAPC4	0	genome.wustl.edu	37	4	25419249	25419249	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	25419249	25419249	A	C	SNP	ANAPC4	ENST00000510092	human	ensembl	74_37	+1	known	missense	c.2090	p.Q697P	0.989	pirsf_APC4_metazoa	superfamily_WD40_repeat_dom,pirsf_APC4_metazoa	-	no_errors	ANAPC4	HGNC	ENSG00000053900				193	1	0.515464	164	11	6.28571
SLC34A2	0	genome.wustl.edu	37	4	25672389	25672389	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	25672389	25672389	A	G	SNP	SLC34A2	ENST00000382051	human	ensembl	74_37	+1	known	silent	c.861	p.A287	0.282	superfamily_ABC1_TM_dom,tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,superfamily_ABC1_TM_dom,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765				34	0	0	23	11	32.3529
CCKAR	0	genome.wustl.edu	37	4	26483729	26483729	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	26483729	26483729	T	A	SNP	CCKAR	ENST00000295589	human	ensembl	74_37	-1	known	missense	c.818	p.K273M	0.027	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A	pfam_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394				105	0	0	52	11	17.4603
FAM193A	0	genome.wustl.edu	37	4	2664886	2664886	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	2664886	2664886	A	T	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	missense	c.1077	p.E359D	0.995	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				124	0	0	61	20	24.6914
HTT	0	genome.wustl.edu	37	4	3201628	3201628	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	3201628	3201628	C	T	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	silent	c.5538	p.T1846	0.746	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				58	0	0	28	12	30
ADRA2C	0	genome.wustl.edu	37	4	3768921	3768921	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	3768921	3768921	C	T	SNP	ADRA2C	ENST00000330055	human	ensembl	74_37	+1	known	silent	c.588	p.G196	0.901	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2C_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA2C	HGNC	ENSG00000184160				17	0	0	6	3	33.3333
PDS5A	0	genome.wustl.edu	37	4	39921982	39921982	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	39921982	39921982	A	C	SNP	PDS5A	ENST00000303538	human	ensembl	74_37	-1	known	missense	c.692	p.L231R	0.328	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892				61	0	0	37	16	30.1887
RBM47	0	genome.wustl.edu	37	4	40440364	40440364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	40440364	40440364	C	T	SNP	RBM47	ENST00000295971	human	ensembl	74_37	-1	known	missense	c.547	p.V183I	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694				136	0	0	59	24	28.9157
ZNF721	0	genome.wustl.edu	37	4	436257	436257	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	436257	436257	G	T	SNP	ZNF721	ENST00000511833	human	ensembl	74_37	-1	known	missense	c.1999	p.Q667K	0.233	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903				124	0	0	94	14	12.963
ZNF721	0	genome.wustl.edu	37	4	436261	436261	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	436261	436261	T	C	SNP	ZNF721	ENST00000511833	human	ensembl	74_37	-1	known	silent	c.1995	p.G665	0.995	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903				130	0	0	100	13	11.5044
ZNF721	0	genome.wustl.edu	37	4	466480	466480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	466480	466480	G	A	SNP	ZNF721	ENST00000515578	human	ensembl	74_37	-1	known	missense	c.14	p.T5I	0.636	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF721	HGNC	ENSG00000182903				84	0	0	50	4	7.40741
MSX1	0	genome.wustl.edu	37	4	4864851	4864851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	4864851	4864851	G	A	SNP	MSX1	ENST00000382723	human	ensembl	74_37	+1	known	missense	c.893	p.S298N	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MSX1	HGNC	ENSG00000163132				21	0	0	8	5	38.4615
FIP1L1	0	genome.wustl.edu	37	4	54319243	54319243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	54319243	54319243	G	A	SNP	FIP1L1	ENST00000337488	human	ensembl	74_37	+1	known	missense	c.1442	p.R481H	1.000	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216				70	0	0	47	11	18.9655
SRP72	0	genome.wustl.edu	37	4	57335842	57335842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	57335842	57335842	G	A	SNP	SRP72	ENST00000342756	human	ensembl	74_37	+1	known	missense	c.133	p.V45I	1.000	NULL	pfam_Signal_recog_part_SRP72_RNA-bd,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SRP72	HGNC	ENSG00000174780				109	0	0	62	17	21.519
C4orf50	0	genome.wustl.edu	37	4	5961245	5961245	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	5961245	5961245	A	C	SNP	C4orf50	ENST00000531445	human	ensembl	74_37	-1	known	missense	c.2110	p.C704G	0.000	NULL	NULL	-	no_errors	C4orf50	HGNC	ENSG00000181215				81	0	0	30	11	26.8293
EPHA5	0	genome.wustl.edu	37	4	66535318	66535318	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	66535318	66535318	G	A	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	missense	c.143	p.A48V	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				43	0	0	19	3	13.6364
UBA6-AS1	0	genome.wustl.edu	37	4	68928451	68928451	+	RNA	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	68928451	68928451	T	C	SNP	UBA6-AS1	ENST00000500538	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UBA6-AS1	HGNC	ENSG00000248049				57	0	0	23	19	45.2381
UGT2B10	0	genome.wustl.edu	37	4	69681741	69681741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	69681741	69681741	G	A	SNP	UGT2B10	ENST00000265403	human	ensembl	74_37	+1	known	missense	c.4	p.A2T	0.018	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B10	HGNC	ENSG00000109181				107	0	0	53	20	27.3973
ENAM	0	genome.wustl.edu	37	4	71510476	71510476	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	71510476	71510476	C	G	SNP	ENAM	ENST00000396073	human	ensembl	74_37	+1	known	missense	c.3333	p.D1111E	0.000	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464				76	0	0	56	15	21.1268
IGJ	0	genome.wustl.edu	37	4	71527831	71527831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	71527831	71527831	C	T	SNP	IGJ	ENST00000543780	human	ensembl	74_37	-1	known	missense	c.214	p.V72M	0.999	NULL	NULL	-	no_errors	IGJ	HGNC	ENSG00000132465				134	0	0	75	25	25
SLC4A4	0	genome.wustl.edu	37	4	72222756	72222756	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	72222756	72222756	C	T	SNP	SLC4A4	ENST00000425175	human	ensembl	74_37	+1	known	silent	c.582	p.G194	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493				97	0	0	65	4	5.7971
ANKRD17	0	genome.wustl.edu	37	4	73962877	73962877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	73962877	73962877	G	A	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	missense	c.5134	p.R1712C	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466				309	0	0	175	47	21.1712
ANKRD17	0	genome.wustl.edu	37	4	74124065	74124065	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	74124065	74124065	G	A	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	silent	c.321	p.G107	0.025	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466				89	0	0	36	10	21.7391
PPEF2	0	genome.wustl.edu	37	4	76785641	76785641	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	76785641	76785641	G	A	SNP	PPEF2	ENST00000286719	human	ensembl	74_37	-1	known	nonsense	c.1960	p.R654*	1.000	pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_hand_dom	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_dom,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_hand_dom	-	no_errors	PPEF2	HGNC	ENSG00000156194				86	0	0	30	20	40
BMP3	0	genome.wustl.edu	37	4	81967637	81967637	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	81967637	81967637	G	T	SNP	BMP3	ENST00000282701	human	ensembl	74_37	+1	known	missense	c.1062	p.Q354H	1.000	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785				47	0	0	33	11	25
HTRA3	0	genome.wustl.edu	37	4	8293207	8293207	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	8293207	8293207	C	T	SNP	HTRA3	ENST00000307358	human	ensembl	74_37	+1	known	silent	c.819	p.I273	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,prints_Peptidase_S1C	pfam_Peptidase_S1,pfam_Kazal_dom,pfam_PDZ,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA3	HGNC	ENSG00000170801				57	0	0	33	16	32.6531
HPSE	0	genome.wustl.edu	37	4	84231184	84231184	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	84231184	84231184	T	C	SNP	HPSE	ENST00000311412	human	ensembl	74_37	-1	known	missense	c.890	p.H297R	1.000	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE	HGNC	ENSG00000173083				141	0	0	89	17	16.0377
FAM175A	0	genome.wustl.edu	37	4	84384689	84384689	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	84384689	84384689	G	A	SNP	FAM175A	ENST00000321945	human	ensembl	74_37	-1	known	nonsense	c.754	p.R252*	0.005	prints_FAM175_BRISC_cplx_Abro1_su	prints_FAM175_BRCA1-A_cplx_Abraxas_su,prints_FAM175,prints_FAM175_BRISC_cplx_Abro1_su	-	no_errors	FAM175A	HGNC	ENSG00000163322				79	0	0	42	15	26.3158
HSD17B13	0	genome.wustl.edu	37	4	88243791	88243791	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	88243791	88243791	A	T	SNP	HSD17B13	ENST00000328546	human	ensembl	74_37	-1	known	missense	c.203	p.I68N	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B13	HGNC	ENSG00000170509				94	0	0	69	27	28.125
HSD17B11	0	genome.wustl.edu	37	4	88293942	88293942	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	88293942	88293942	A	G	SNP	HSD17B11	ENST00000358290	human	ensembl	74_37	-1	known	missense	c.476	p.M159T	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B11	HGNC	ENSG00000198189				70	0	0	49	4	7.54717
ABCG2	0	genome.wustl.edu	37	4	89036197	89036197	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	89036197	89036197	C	T	SNP	ABCG2	ENST00000237612	human	ensembl	74_37	-1	known	silent	c.855	p.E285	0.997	pfscan_ABC_transporter-like	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG2	HGNC	ENSG00000118777				57	0	0	23	5	17.8571
TMEM175	0	genome.wustl.edu	37	4	944254	944254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	944254	944254	G	A	SNP	TMEM175	ENST00000264771	human	ensembl	74_37	+1	known	missense	c.238	p.V80I	1.000	pfam_DUF1211_TMEM175	pfam_DUF1211_TMEM175	-	no_errors	TMEM175	HGNC	ENSG00000127419				112	0	0	49	26	34.6667
SRP19	0	genome.wustl.edu	37	5	112203173	112203173	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	112203173	112203173	C	G	SNP	SRP19	ENST00000505459	human	ensembl	74_37	+1	known	missense	c.374	p.A125G	1.000	NULL	pfam_Signal_recog_particle_SRP19,superfamily_Signal_recog_particle_SRP19	-	no_errors	SRP19	HGNC	ENSG00000153037				52	0	0	32	5	13.5135
ZNF608	0	genome.wustl.edu	37	5	124036756	124036756	+	Silent	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	124036756	124036756	A	C	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	silent	c.1113	p.P371	0.978	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				101	0	0	59	25	29.7619
ADAMTS19	0	genome.wustl.edu	37	5	129015539	129015539	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	129015539	129015539	C	T	SNP	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	silent	c.2571	p.T857	0.206	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808				79	0	0	35	21	37.5
SEPT8	0	genome.wustl.edu	37	5	132100012	132100012	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	132100012	132100012	C	T	SNP	SEPT8	ENST00000378719	human	ensembl	74_37	-1	known	missense	c.251	p.R84Q	1.000	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT8	HGNC	ENSG00000164402				68	0	0	39	9	18.75
SEC24A	0	genome.wustl.edu	37	5	134010443	134010443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	134010443	134010443	G	A	SNP	SEC24A	ENST00000398844	human	ensembl	74_37	+1	known	missense	c.956	p.S319N	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615				42	0	0	24	15	38.4615
CAMLG	0	genome.wustl.edu	37	5	134077003	134077003	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	134077003	134077003	G	A	SNP	CAMLG	ENST00000297156	human	ensembl	74_37	+1	known	silent	c.423	p.A141	0.000	pirsf_Ca_signal-mod_cyclophilin_lig	pirsf_Ca_signal-mod_cyclophilin_lig	-	no_errors	CAMLG	HGNC	ENSG00000164615				75	0	0	24	10	29.4118
CLPTM1L	0	genome.wustl.edu	37	5	1344507	1344507	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	1344507	1344507	G	A	SNP	CLPTM1L	ENST00000320895	human	ensembl	74_37	-1	known	silent	c.222	p.V74	0.999	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656				50	0	0	28	10	26.3158
KLHL3	0	genome.wustl.edu	37	5	136974736	136974736	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	136974736	136974736	C	T	SNP	KLHL3	ENST00000309755	human	ensembl	74_37	-1	known	silent	c.1125	p.T375	0.494	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL3	HGNC	ENSG00000146021				50	0	0	29	9	23.6842
DNAH5	0	genome.wustl.edu	37	5	13759008	13759008	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	13759008	13759008	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.10366	p.A3456T	0.984	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				184	0	0	115	38	24.8366
NRG2	0	genome.wustl.edu	37	5	139251400	139251400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	139251400	139251400	C	T	SNP	NRG2	ENST00000545385	human	ensembl	74_37	-1	known	missense	c.1018	p.G340R	1.000	NULL	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom	-	no_errors	NRG2	HGNC	ENSG00000158458				101	0	0	32	23	41.8182
SRA1	0	genome.wustl.edu	37	5	139936816	139936816	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	139936816	139936816	A	T	SNP	SRA1	ENST00000336283	human	ensembl	74_37	-1	known	missense	c.103	p.Y35N	0.954	NULL	pfam_SRA1-protein/COPII_Sec31	-	no_errors	SRA1	HGNC	ENSG00000213523				90	0	0	60	4	6.25
APBB3	0	genome.wustl.edu	37	5	139941484	139941484	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	139941484	139941484	G	A	SNP	APBB3	ENST00000467078	human	ensembl	74_37	-1	known	silent	c.723	p.S241	0.474	NULL	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	APBB3	HGNC	ENSG00000113108				38	0	0	16	8	33.3333
PCDHA1	0	genome.wustl.edu	37	5	140167916	140167916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140167916	140167916	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	missense	c.2041	p.R681W	0.002	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				105	0	0	43	15	25.8621
PCDHA3	0	genome.wustl.edu	37	5	140181497	140181497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140181497	140181497	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.715	p.A239T	0.990	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				62	0	0	25	5	16.6667
PCDHA4	0	genome.wustl.edu	37	5	140188299	140188299	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140188299	140188299	G	A	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	silent	c.1527	p.S509	0.733	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				177	0	0	85	32	27.3504
PCDHA7	0	genome.wustl.edu	37	5	140216075	140216075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140216075	140216075	G	A	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.2107	p.A703T	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				169	0	0	95	35	26.9231
PCDHA11	0	genome.wustl.edu	37	5	140248773	140248773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140248773	140248773	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.85	p.G29S	0.323	pfam_Cadherin_N,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				102	0	0	56	10	15.1515
PCDHA13	0	genome.wustl.edu	37	5	140262038	140262038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140262038	140262038	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	missense	c.185	p.R62H	0.975	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				161	0	0	49	38	43.6782
PCDHB1	0	genome.wustl.edu	37	5	140431715	140431715	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140431715	140431715	G	A	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	silent	c.660	p.P220	0.659	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				16	0	0	9	5	35.7143
PCDHB2	0	genome.wustl.edu	37	5	140476009	140476009	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140476009	140476009	C	T	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	silent	c.1635	p.S545	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				91	0	0	40	8	16.6667
PCDHB3	0	genome.wustl.edu	37	5	140482006	140482006	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140482006	140482006	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	silent	c.1773	p.A591	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				139	0	0	82	13	13.6842
PCDHB5	0	genome.wustl.edu	37	5	140516916	140516916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140516916	140516916	G	A	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.1900	p.A634T	0.555	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				94	0	0	46	20	30.303
PCDHB12	0	genome.wustl.edu	37	5	140588663	140588663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140588663	140588663	C	T	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	missense	c.184	p.R62W	0.017	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				161	0	0	61	34	35.7895
PCDHB12	0	genome.wustl.edu	37	5	140589450	140589450	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140589450	140589450	G	T	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	missense	c.971	p.G324V	0.772	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				78	0	0	52	11	17.4603
PCDHGA6	0	genome.wustl.edu	37	5	140754671	140754671	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140754671	140754671	A	G	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	missense	c.1021	p.N341D	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				226	0	0	117	49	29.5181
PCDHGA9	0	genome.wustl.edu	37	5	140783640	140783640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140783640	140783640	G	A	SNP	PCDHGA9	ENST00000573521	human	ensembl	74_37	+1	known	missense	c.1121	p.R374Q	0.011	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934				26	0	0	11	6	35.2941
PCDHGB7	0	genome.wustl.edu	37	5	140799286	140799286	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140799286	140799286	G	A	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	silent	c.1860	p.G620	0.945	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122				129	0	0	70	17	19.5402
ARAP3	0	genome.wustl.edu	37	5	141050145	141050145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	141050145	141050145	C	T	SNP	ARAP3	ENST00000239440	human	ensembl	74_37	-1	known	missense	c.2041	p.G681S	0.996	smart_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318				92	0	0	48	15	23.8095
TRIO	0	genome.wustl.edu	37	5	14461390	14461390	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	14461390	14461390	G	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	silent	c.5466	p.A1822	0.000	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				30	0	0	10	5	33.3333
TRIO	0	genome.wustl.edu	37	5	14498630	14498630	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	14498630	14498630	A	G	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.8213	p.D2738G	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				33	0	0	15	6	28.5714
TRIO	0	genome.wustl.edu	37	5	14508455	14508455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	14508455	14508455	G	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.9218	p.R3073H	1.000	superfamily_Kinase-like_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				105	0	0	49	23	31.9444
FBXO38	0	genome.wustl.edu	37	5	147774406	147774406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	147774406	147774406	G	A	SNP	FBXO38	ENST00000340253	human	ensembl	74_37	+1	known	missense	c.67	p.A23T	0.015	NULL	superfamily_F-box_dom	-	no_errors	FBXO38	HGNC	ENSG00000145868				107	0	0	65	22	25.2874
AFAP1L1	0	genome.wustl.edu	37	5	148685930	148685930	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	148685930	148685930	C	T	SNP	AFAP1L1	ENST00000296721	human	ensembl	74_37	+1	known	silent	c.498	p.Y166	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510				30	0	0	28	6	17.6471
PDGFRB	0	genome.wustl.edu	37	5	149497347	149497347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	149497347	149497347	G	A	SNP	PDGFRB	ENST00000261799	human	ensembl	74_37	-1	known	missense	c.2971	p.R991C	0.996	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRB	HGNC	ENSG00000113721				45	0	0	15	13	46.4286
SYNPO	0	genome.wustl.edu	37	5	150029294	150029294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	150029294	150029294	G	A	SNP	SYNPO	ENST00000394243	human	ensembl	74_37	+1	known	missense	c.2189	p.R730H	1.000	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992				82	0	0	50	21	29.5775
NMUR2	0	genome.wustl.edu	37	5	151784174	151784174	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	151784174	151784174	G	A	SNP	NMUR2	ENST00000255262	human	ensembl	74_37	-1	known	silent	c.501	p.L167	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NeuromedU_rcpt_2,prints_NeuromedU_rcpt,prints_GPCR_Rhodpsn	-	no_errors	NMUR2	HGNC	ENSG00000132911				70	0	0	32	11	25.5814
LARP1	0	genome.wustl.edu	37	5	154092575	154092575	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	154092575	154092575	C	T	SNP	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	silent	c.90	p.G30	0.984	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				67	0	0	28	15	34.8837
FBXL7	0	genome.wustl.edu	37	5	15616143	15616143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	15616143	15616143	C	T	SNP	FBXL7	ENST00000504595	human	ensembl	74_37	+1	known	missense	c.89	p.T30M	1.000	NULL	pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL7	HGNC	ENSG00000183580				48	0	0	23	8	25.8065
HMMR	0	genome.wustl.edu	37	5	162910330	162910330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	162910330	162910330	G	A	SNP	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	missense	c.1742	p.R581H	1.000	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571				56	0	0	27	16	37.2093
NKX2-5	0	genome.wustl.edu	37	5	172661804	172661804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	172661804	172661804	G	A	SNP	NKX2-5	ENST00000329198	human	ensembl	74_37	-1	known	missense	c.283	p.R95C	0.600	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-5	HGNC	ENSG00000183072				32	0	0	23	9	28.125
CLTB	0	genome.wustl.edu	37	5	175819790	175819790	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	175819790	175819790	C	T	SNP	CLTB	ENST00000310418	human	ensembl	74_37	-1	known	silent	c.675	p.T225	0.547	pfam_Clathrin_L-chain	pfam_Clathrin_L-chain,superfamily_RuBisCO_lsu_C	-	no_errors	CLTB	HGNC	ENSG00000175416				122	0	0	60	27	31.0345
GPRIN1	0	genome.wustl.edu	37	5	176023872	176023872	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	176023872	176023872	G	A	SNP	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	silent	c.2964	p.R988	0.988	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258				30	0	0	7	5	41.6667
MIR4281	0	genome.wustl.edu	37	5	176056501	176056501	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	176056501	176056501	C	T	SNP	MIR4281	ENST00000580852	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR4281	HGNC	ENSG00000266329				35	0	0	13	8	38.0952
SNCB	0	genome.wustl.edu	37	5	176056536	176056536	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	176056536	176056536	G	A	SNP	SNCB	ENST00000310112	human	ensembl	74_37	-1	known	silent	c.120	p.V40	0.995	pfam_Synuclein,prints_Synuclein	pfam_Synuclein,prints_Synuclein,prints_Synuclein_beta	-	no_errors	SNCB	HGNC	ENSG00000074317				37	0	0	28	12	30
EIF4E1B	0	genome.wustl.edu	37	5	176070213	176070213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	176070213	176070213	C	T	SNP	EIF4E1B	ENST00000318682	human	ensembl	74_37	+1	known	missense	c.146	p.A49V	0.004	superfamily_TIF_eIF4e-like_dom	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	-	no_errors	EIF4E1B	HGNC	ENSG00000175766				94	0	0	47	6	11.3208
UIMC1	0	genome.wustl.edu	37	5	176332464	176332464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	176332464	176332464	C	T	SNP	UIMC1	ENST00000377219	human	ensembl	74_37	-1	known	missense	c.1982	p.G661D	1.000	NULL	smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif	-	no_errors	UIMC1	HGNC	ENSG00000087206				66	0	0	41	16	28.0702
NSD1	0	genome.wustl.edu	37	5	176694686	176694686	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	176694686	176694686	G	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.5270	p.R1757M	1.000	pfam_PWWP_dom,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				138	0	0	50	20	28.5714
RUFY1	0	genome.wustl.edu	37	5	179012795	179012795	+	Splice_Site	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	179012795	179012795	A	G	SNP	RUFY1	ENST00000319449	human	ensembl	74_37	+1	known	splice_site	c.957-2	e8-2	1.000	-	-	-	no_errors	RUFY1	HGNC	ENSG00000176783				103	0	0	64	4	5.88235
SQSTM1	0	genome.wustl.edu	37	5	179250039	179250039	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	179250039	179250039	G	A	SNP	SQSTM1	ENST00000389805	human	ensembl	74_37	+1	known	missense	c.287	p.R96Q	1.000	pfam_OPR_PB1,smart_OPR_PB1	pfam_Znf_ZZ,pfam_OPR_PB1,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	SQSTM1	HGNC	ENSG00000161011				40	0	0	22	9	29.0323
FLT4	0	genome.wustl.edu	37	5	180056351	180056351	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	180056351	180056351	T	C	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.893	p.H298R	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				100	0	0	42	23	35.3846
BTNL3	0	genome.wustl.edu	37	5	180432603	180432603	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	180432603	180432603	T	C	SNP	BTNL3	ENST00000342868	human	ensembl	74_37	+1	known	missense	c.1132	p.W378R	0.997	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTNL3	HGNC	ENSG00000168903				93	0	0	49	20	28.9855
TRIM7	0	genome.wustl.edu	37	5	180622451	180622451	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	180622451	180622451	G	A	SNP	TRIM7	ENST00000274773	human	ensembl	74_37	-1	known	silent	c.1251	p.S417	0.816	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM7	HGNC	ENSG00000146054				20	0	0	4	3	42.8571
IRX2	0	genome.wustl.edu	37	5	2749765	2749765	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	2749765	2749765	A	G	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	missense	c.386	p.L129P	0.999	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				121	0	0	38	21	35.5932
ADAMTS12	0	genome.wustl.edu	37	5	33576770	33576770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	33576770	33576770	C	T	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.3361	p.A1121T	0.001	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				82	0	0	66	6	8.33333
IRX1	0	genome.wustl.edu	37	5	3596380	3596380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	3596380	3596380	C	T	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.161	p.A54V	0.960	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				12	0	0	2	2	50
NIPBL	0	genome.wustl.edu	37	5	37022190	37022190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	37022190	37022190	G	A	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	missense	c.5366	p.R1789Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				53	0	0	30	10	25
RICTOR	0	genome.wustl.edu	37	5	38968099	38968099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	38968099	38968099	G	A	SNP	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	missense	c.1006	p.R336C	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				59	0	0	50	8	13.7931
MROH2B	0	genome.wustl.edu	37	5	41061745	41061745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	41061745	41061745	C	T	SNP	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	missense	c.542	p.R181Q	0.978	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495				128	0	0	69	29	29.5918
SLC9A3	0	genome.wustl.edu	37	5	480034	480034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	480034	480034	G	A	SNP	SLC9A3	ENST00000264938	human	ensembl	74_37	-1	known	missense	c.1564	p.R522W	0.047	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_dom,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230				132	0	0	58	34	36.9565
ADAMTS16	0	genome.wustl.edu	37	5	5239326	5239326	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	5239326	5239326	C	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	silent	c.2217	p.N739	0.964	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				201	0	0	110	61	35.6725
KIAA0947	0	genome.wustl.edu	37	5	5466527	5466527	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	5466527	5466527	C	T	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	silent	c.5973	p.H1991	0.255	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				41	0	0	25	10	28.5714
MAP3K1	0	genome.wustl.edu	37	5	56179352	56179352	+	Splice_Site	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	56179352	56179352	A	G	SNP	MAP3K1	ENST00000399503	human	ensembl	74_37	+1	novel	splice_site	c.3667-2	e15-2	0.998	-	-	-	no_errors	MAP3K1	HGNC	ENSG00000095015				40	0	0	30	9	23.0769
GPBP1	0	genome.wustl.edu	37	5	56531795	56531795	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	56531795	56531795	G	A	SNP	GPBP1	ENST00000424459	human	ensembl	74_37	+1	known	silent	c.414	p.P138	0.854	NULL	NULL	-	no_errors	GPBP1	HGNC	ENSG00000062194				87	0	0	53	17	24.2857
FLJ33360	0	genome.wustl.edu	37	5	6337327	6337327	+	RNA	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	6337327	6337327	G	T	SNP	FLJ33360	ENST00000507444	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	CTD-2324F15.2	Clone_based_vega_gene	ENSG00000250490				131	0	0	68	25	26.8817
TRIM23	0	genome.wustl.edu	37	5	64909976	64909976	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	64909976	64909976	C	T	SNP	TRIM23	ENST00000231524	human	ensembl	74_37	-1	known	silent	c.315	p.G105	0.990	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Znf_B-box,superfamily_P-loop_NTPase,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_Znf_C2H2,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	TRIM23	HGNC	ENSG00000113595				130	0	0	69	29	29.5918
PAPD7	0	genome.wustl.edu	37	5	6751166	6751166	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	6751166	6751166	G	A	SNP	PAPD7	ENST00000230859	human	ensembl	74_37	+1	known	silent	c.1125	p.P375	0.141	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD7	HGNC	ENSG00000112941				140	0	0	89	26	22.6087
MAP1B	0	genome.wustl.edu	37	5	71494147	71494147	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	71494147	71494147	G	A	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	silent	c.4965	p.E1655	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				92	0	0	57	23	28.75
ZNF366	0	genome.wustl.edu	37	5	71739823	71739823	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	71739823	71739823	C	A	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	missense	c.1995	p.E665D	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				277	0	0	151	63	29.4393
ZNF366	0	genome.wustl.edu	37	5	71756222	71756222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	71756222	71756222	C	T	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	missense	c.1102	p.V368M	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				65	0	0	36	8	18.1818
ADCY2	0	genome.wustl.edu	37	5	7396481	7396481	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	7396481	7396481	C	T	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.72	p.D24	0.030	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				32	0	0	20	8	28.5714
POLK	0	genome.wustl.edu	37	5	74892817	74892817	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	74892817	74892817	T	C	SNP	POLK	ENST00000241436	human	ensembl	74_37	+1	known	missense	c.2299	p.Y767H	0.000	NULL	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_PolY_HhH_motif,superfamily_DNA_pol_Y-fam_little_finger,smart_Znf_Rad18_put,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLK	HGNC	ENSG00000122008				98	0	0	61	8	11.5942
IQGAP2	0	genome.wustl.edu	37	5	75993813	75993813	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	75993813	75993813	A	G	SNP	IQGAP2	ENST00000274364	human	ensembl	74_37	+1	known	missense	c.4208	p.D1403G	1.000	pfam_RasGAP_C	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703				19	0	0	12	3	20
F2R	0	genome.wustl.edu	37	5	76029169	76029169	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	76029169	76029169	C	T	SNP	F2R	ENST00000319211	human	ensembl	74_37	+1	known	silent	c.1119	p.Y373	0.916	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thrmbn_rcpt,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	F2R	HGNC	ENSG00000181104				121	0	0	68	40	37.037
PAPD4	0	genome.wustl.edu	37	5	78919302	78919302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	78919302	78919302	C	T	SNP	PAPD4	ENST00000296783	human	ensembl	74_37	+1	known	missense	c.455	p.A152V	1.000	NULL	pfam_PAP_assoc	-	no_errors	PAPD4	HGNC	ENSG00000164329				55	0	0	29	4	12.1212
CMYA5	0	genome.wustl.edu	37	5	79035006	79035006	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	79035006	79035006	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.10418	p.S3473N	0.791	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				22	0	0	11	5	31.25
VCAN	0	genome.wustl.edu	37	5	82815967	82815967	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	82815967	82815967	T	C	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	silent	c.1842	p.N614	0.001	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				162	0	0	76	36	32.1429
CHD1	0	genome.wustl.edu	37	5	98221294	98221294	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	98221294	98221294	A	G	SNP	CHD1	ENST00000284049	human	ensembl	74_37	-1	known	silent	c.2556	p.A852	0.982	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922				79	0	0	36	17	32.0755
SIM1	0	genome.wustl.edu	37	6	100838492	100838492	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	100838492	100838492	T	C	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.2046	p.I682M	1.000	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				76	0	0	56	3	5.08475
SIM1	0	genome.wustl.edu	37	6	100895235	100895235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	100895235	100895235	C	T	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.907	p.G303S	1.000	pfam_PAS_fold_3,superfamily_PAS,smart_PAC	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				70	0	0	34	18	34.6154
ATG5	0	genome.wustl.edu	37	6	106649993	106649993	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	106649993	106649993	G	A	SNP	ATG5	ENST00000475645	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ATG5	HGNC	ENSG00000057663				29	0	0	15	13	46.4286
GPR6	0	genome.wustl.edu	37	6	110300686	110300686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	110300686	110300686	G	A	SNP	GPR6	ENST00000414000	human	ensembl	74_37	+1	known	missense	c.416	p.G139D	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR6,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn	-	no_errors	GPR6	HGNC	ENSG00000146360				173	0	0	110	41	27.1523
DDO	0	genome.wustl.edu	37	6	110726062	110726062	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	110726062	110726062	T	C	SNP	DDO	ENST00000368924	human	ensembl	74_37	-1	known	missense	c.457	p.K153E	0.903	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	DDO	HGNC	ENSG00000203797				56	0	0	34	8	19.0476
SLC16A10	0	genome.wustl.edu	37	6	111493979	111493979	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	111493979	111493979	G	A	SNP	SLC16A10	ENST00000368851	human	ensembl	74_37	+1	known	missense	c.425	p.R142Q	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394				114	0	0	77	25	24.5098
ROS1	0	genome.wustl.edu	37	6	117681166	117681166	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	117681166	117681166	G	T	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	missense	c.3454	p.P1152T	0.485	superfamily_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				31	0	0	10	5	33.3333
HIVEP1	0	genome.wustl.edu	37	6	12122644	12122644	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	12122644	12122644	C	T	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	silent	c.2616	p.G872	0.316	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				101	0	0	49	18	26.8657
HIVEP1	0	genome.wustl.edu	37	6	12125941	12125941	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	12125941	12125941	C	T	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	silent	c.5913	p.S1971	0.735	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				71	0	0	36	19	34.5455
GJA1	0	genome.wustl.edu	37	6	121768938	121768938	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	121768938	121768938	A	G	SNP	GJA1	ENST00000282561	human	ensembl	74_37	+1	known	silent	c.945	p.A315	0.989	NULL	pfam_Connexin_N,pfam_Connexin_CCC,pfam_Connexin43_C,smart_Connexin_N,prints_Connexin,prints_Connexin43	-	no_errors	GJA1	HGNC	ENSG00000152661				136	0	0	81	39	32.5
KIAA1244	0	genome.wustl.edu	37	6	138615258	138615258	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	138615258	138615258	T	C	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	missense	c.3497	p.M1166T	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379				50	0	0	30	3	9.09091
KIAA1244	0	genome.wustl.edu	37	6	138655648	138655648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	138655648	138655648	G	A	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	missense	c.5665	p.V1889I	1.000	NULL	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379				27	0	0	23	10	30.303
SASH1	0	genome.wustl.edu	37	6	148711347	148711347	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	148711347	148711347	C	T	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	silent	c.234	p.C78	0.978	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				72	0	0	28	17	37.7778
LATS1	0	genome.wustl.edu	37	6	150016247	150016247	+	Silent	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	150016247	150016247	T	A	SNP	LATS1	ENST00000253339	human	ensembl	74_37	-1	known	silent	c.459	p.A153	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS1	HGNC	ENSG00000131023				99	0	0	58	24	29.2683
ESR1	0	genome.wustl.edu	37	6	152129401	152129401	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	152129401	152129401	G	A	SNP	ESR1	ENST00000206249	human	ensembl	74_37	+1	known	silent	c.354	p.S118	0.993	pfam_Oestr_rcpt,prints_Oestr_rcpt	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831				11	0	0	8	5	38.4615
SYNE1	0	genome.wustl.edu	37	6	152542668	152542668	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	152542668	152542668	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.21549	p.Q7183	1.000	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				94	0	0	48	18	27.2727
SYNE1	0	genome.wustl.edu	37	6	152555882	152555882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	152555882	152555882	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.20450	p.R6817Q	0.960	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				54	0	0	23	10	30.303
OPRM1	0	genome.wustl.edu	37	6	154360894	154360894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	154360894	154360894	C	T	SNP	OPRM1	ENST00000434900	human	ensembl	74_37	+1	known	missense	c.494	p.T165M	1.000	prints_GPCR_Rhodpsn,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mu_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038				60	0	0	37	13	26
ATXN1	0	genome.wustl.edu	37	6	16328426	16328426	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	16328426	16328426	C	T	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	missense	c.116	p.R39Q	0.997	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				121	0	0	41	24	36.9231
MLLT4	0	genome.wustl.edu	37	6	168347522	168347522	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	168347522	168347522	C	A	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	missense	c.3473	p.P1158H	0.997	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				125	0	0	92	6	6.12245
THBS2	0	genome.wustl.edu	37	6	169641950	169641950	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	169641950	169641950	G	A	SNP	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	silent	c.798	p.C266	0.925	NULL	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340				67	0	0	27	8	22.8571
ERMARD	0	genome.wustl.edu	37	6	170176757	170176757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	170176757	170176757	G	A	SNP	ERMARD	ENST00000366773	human	ensembl	74_37	+1	known	missense	c.1727	p.R576H	0.998	NULL	NULL	-	no_errors	ERMARD	HGNC	ENSG00000130023				58	0	0	36	12	25
CAP2	0	genome.wustl.edu	37	6	17539525	17539525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	17539525	17539525	C	T	SNP	CAP2	ENST00000229922	human	ensembl	74_37	+1	known	missense	c.662	p.A221V	0.000	pfam_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP2	HGNC	ENSG00000112186				201	0	0	106	51	32.4841
OR2B2	0	genome.wustl.edu	37	6	27880013	27880013	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	27880013	27880013	C	A	SNP	OR2B2	ENST00000303324	human	ensembl	74_37	-1	known	missense	c.85	p.V29L	0.987	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B2	HGNC	ENSG00000168131				72	0	0	46	12	20.6897
HLA-F	0	genome.wustl.edu	37	6	29692082	29692082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	29692082	29692082	C	T	SNP	HLA-F	ENST00000259951	human	ensembl	74_37	+1	known	missense	c.467	p.A156V	0.738	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-F	HGNC	ENSG00000204642				121	0	0	87	5	5.43478
HLA-F	0	genome.wustl.edu	37	6	29694785	29694785	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	29694785	29694785	G	T	SNP	HLA-F	ENST00000259951	human	ensembl	74_37	+1	known	missense	c.1162	p.G388C	1.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-F	HGNC	ENSG00000204642				168	0	0	100	41	29.078
ABCF1	0	genome.wustl.edu	37	6	30545935	30545935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	30545935	30545935	G	A	SNP	ABCF1	ENST00000326195	human	ensembl	74_37	+1	known	missense	c.299	p.R100H	0.991	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574				77	0	0	41	14	25.4545
PPP1R10	0	genome.wustl.edu	37	6	30572422	30572422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	30572422	30572422	C	T	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	missense	c.1045	p.A349T	0.004	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				316	0	0	170	57	25.1101
VARS2	0	genome.wustl.edu	37	6	30892199	30892199	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	30892199	30892199	C	T	SNP	VARS2	ENST00000541562	human	ensembl	74_37	+1	known	silent	c.2625	p.C875	0.833	pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS2	HGNC	ENSG00000137411				84	0	0	40	17	29.8246
BPHL	0	genome.wustl.edu	37	6	3152763	3152763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	3152763	3152763	G	A	SNP	BPHL	ENST00000380379	human	ensembl	74_37	+1	known	missense	c.830	p.R277H	0.718	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1	-	no_errors	BPHL	HGNC	ENSG00000137274				115	0	0	69	29	29.5918
ATF6B	0	genome.wustl.edu	37	6	32087712	32087712	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	32087712	32087712	C	A	SNP	ATF6B	ENST00000375203	human	ensembl	74_37	-1	known	missense	c.855	p.Q285H	0.995	NULL	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6B	HGNC	ENSG00000213676				37	0	0	24	4	14.2857
AGPAT1	0	genome.wustl.edu	37	6	32137118	32137118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	32137118	32137118	G	A	SNP	AGPAT1	ENST00000336984	human	ensembl	74_37	-1	known	missense	c.787	p.R263W	1.000	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,tigrfam_AGP_acyltrans	-	no_errors	AGPAT1	HGNC	ENSG00000204310				173	0	0	90	42	31.8182
HLA-DQB2	0	genome.wustl.edu	37	6	32726773	32726773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	32726773	32726773	G	A	SNP	HLA-DQB2	ENST00000435145	human	ensembl	74_37	-1	known	missense	c.500	p.A167V	0.725	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_II_b_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DQB2	HGNC	ENSG00000232629				54	0	0	32	22	40.7407
PSMB9	0	genome.wustl.edu	37	6	32825904	32825904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	32825904	32825904	G	A	SNP	PSMB9	ENST00000374859	human	ensembl	74_37	+1	known	missense	c.383	p.G128E	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB9	HGNC	ENSG00000240065				107	0	0	64	23	26.4368
HLA-DOA	0	genome.wustl.edu	37	6	32976132	32976132	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	32976132	32976132	G	A	SNP	HLA-DOA	ENST00000467465	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HLA-DOA	HGNC	ENSG00000204252				21	0	0	7	3	30
COL11A2	0	genome.wustl.edu	37	6	33133582	33133582	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	33133582	33133582	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	silent	c.4494	p.G1498	0.048	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				93	0	0	41	17	29.3103
COL11A2	0	genome.wustl.edu	37	6	33153500	33153500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	33153500	33153500	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.854	p.T285M	0.729	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				83	0	0	49	18	26.8657
GRM4	0	genome.wustl.edu	37	6	34008337	34008337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	34008337	34008337	C	T	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	missense	c.1357	p.V453I	0.998	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493				25	0	0	9	6	40
SNRPC	0	genome.wustl.edu	37	6	34741334	34741334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	34741334	34741334	G	A	SNP	SNRPC	ENST00000374017	human	ensembl	74_37	+1	known	missense	c.530	p.R177Q	1.000	pirsf_U1_snRNP-C	pfam_Znf_U1-C,smart_Znf_U1,pirsf_U1_snRNP-C,pfscan_Znf_C2H2_matrin	-	no_errors	SNRPC	HGNC	ENSG00000124562				100	0	0	62	16	20.5128
TULP1	0	genome.wustl.edu	37	6	35471369	35471369	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	35471369	35471369	C	T	SNP	TULP1	ENST00000229771	human	ensembl	74_37	-1	known	silent	c.1290	p.A430	0.000	pfam_Tubby_C,superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	-	no_errors	TULP1	HGNC	ENSG00000112041				16	0	0	11	5	31.25
SRPK1	0	genome.wustl.edu	37	6	35837277	35837277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	35837277	35837277	C	T	SNP	SRPK1	ENST00000373825	human	ensembl	74_37	-1	known	missense	c.1393	p.G465R	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK1	HGNC	ENSG00000096063				104	0	0	70	28	28.5714
IRF4	0	genome.wustl.edu	37	6	394997	394997	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	394997	394997	A	G	SNP	IRF4	ENST00000380956	human	ensembl	74_37	+1	known	silent	c.393	p.G131	0.652	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF4	HGNC	ENSG00000137265				38	0	0	34	4	10.5263
TRERF1	0	genome.wustl.edu	37	6	42211030	42211030	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	42211030	42211030	G	A	SNP	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	missense	c.2875	p.R959W	0.999	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496				193	0	0	112	45	28.6624
C6orf226	0	genome.wustl.edu	37	6	42858503	42858503	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	42858503	42858503	T	C	SNP	C6orf226	ENST00000408925	human	ensembl	74_37	-1	novel	silent	c.24	p.Q8	0.000	NULL	NULL	-	no_errors	C6orf226	HGNC	ENSG00000221821				80	0	0	32	18	36
CUL7	0	genome.wustl.edu	37	6	43020092	43020092	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	43020092	43020092	G	A	SNP	CUL7	ENST00000535468	human	ensembl	74_37	-1	known	silent	c.591	p.S197	0.699	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090				47	0	0	21	9	30
CUL9	0	genome.wustl.edu	37	6	43166449	43166449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	43166449	43166449	G	A	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	missense	c.2906	p.R969H	0.266	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				217	0	0	115	41	26.2821
ABCC10	0	genome.wustl.edu	37	6	43417235	43417235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	43417235	43417235	C	T	SNP	ABCC10	ENST00000372530	human	ensembl	74_37	+1	known	missense	c.4279	p.R1427C	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC10	HGNC	ENSG00000124574				87	0	0	46	20	30.303
PAQR8	0	genome.wustl.edu	37	6	52269023	52269023	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	52269023	52269023	G	A	SNP	PAQR8	ENST00000360726	human	ensembl	74_37	+1	known	missense	c.1012	p.A338T	0.989	NULL	pfam_HlyIII-related,superfamily_C-type_lectin_fold	-	no_errors	PAQR8	HGNC	ENSG00000170915				27	0	0	14	11	44
EXOC2	0	genome.wustl.edu	37	6	532495	532495	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	532495	532495	T	A	SNP	EXOC2	ENST00000230449	human	ensembl	74_37	-1	known	missense	c.2354	p.D785V	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685				62	0	0	28	8	22.2222
KHDRBS2	0	genome.wustl.edu	37	6	62604715	62604715	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	62604715	62604715	G	T	SNP	KHDRBS2	ENST00000281156	human	ensembl	74_37	-1	known	missense	c.635	p.P212H	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232				48	0	0	13	7	35
PHF3	0	genome.wustl.edu	37	6	64395471	64395471	+	Silent	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	64395471	64395471	T	A	SNP	PHF3	ENST00000262043	human	ensembl	74_37	+1	known	silent	c.1848	p.T616	0.953	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482				63	0	0	46	6	11.5385
BAI3	0	genome.wustl.edu	37	6	70071269	70071269	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	70071269	70071269	A	G	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	silent	c.4104	p.A1368	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				136	0	0	82	33	28.6957
RIMS1	0	genome.wustl.edu	37	6	73023356	73023356	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	73023356	73023356	C	T	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.4111	p.R1371C	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				23	0	0	16	4	20
KCNQ5	0	genome.wustl.edu	37	6	73902299	73902299	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	73902299	73902299	T	C	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.1751	p.I584T	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				63	0	0	34	11	24.4444
DSP	0	genome.wustl.edu	37	6	7584495	7584495	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	7584495	7584495	C	T	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	nonsense	c.7000	p.R2334*	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				40	0	0	13	17	56.6667
MYO6	0	genome.wustl.edu	37	6	76623784	76623784	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	76623784	76623784	G	A	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	silent	c.3447	p.Q1149	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				88	0	0	62	21	25.3012
BMP6	0	genome.wustl.edu	37	6	7727818	7727818	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	7727818	7727818	C	T	SNP	BMP6	ENST00000283147	human	ensembl	74_37	+1	known	silent	c.630	p.N210	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162				32	0	0	20	3	13.0435
DOPEY1	0	genome.wustl.edu	37	6	83848119	83848119	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	83848119	83848119	T	C	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.4358	p.I1453T	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				99	0	0	40	25	38.4615
PGM3	0	genome.wustl.edu	37	6	83885707	83885707	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	83885707	83885707	A	G	SNP	PGM3	ENST00000513973	human	ensembl	74_37	-1	known	missense	c.1102	p.Y368H	1.000	superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375				72	0	0	35	14	28.5714
ZNF292	0	genome.wustl.edu	37	6	87970082	87970082	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	87970082	87970082	A	G	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	silent	c.6735	p.L2245	0.003	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				83	0	0	47	3	6
EPHA7	0	genome.wustl.edu	37	6	94120757	94120757	+	Silent	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	94120757	94120757	A	T	SNP	EPHA7	ENST00000369303	human	ensembl	74_37	-1	known	silent	c.294	p.I98	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333				103	0	0	63	23	26.7442
GNB2	0	genome.wustl.edu	37	7	100276170	100276170	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	100276170	100276170	G	A	SNP	GNB2	ENST00000303210	human	ensembl	74_37	+1	known	silent	c.849	p.R283	1.000	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB2	HGNC	ENSG00000172354				67	0	0	22	13	37.1429
SLC12A9	0	genome.wustl.edu	37	7	100453339	100453339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	100453339	100453339	C	T	SNP	SLC12A9	ENST00000354161	human	ensembl	74_37	+1	known	missense	c.328	p.R110C	1.000	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828				217	0	0	100	49	32.8859
MUC17	0	genome.wustl.edu	37	7	100676267	100676267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	100676267	100676267	G	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.1570	p.A524T	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				673	1	0.148368	407	171	29.5848
PIK3CG	0	genome.wustl.edu	37	7	106523501	106523501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	106523501	106523501	G	A	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	missense	c.2653	p.A885T	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				222	0	0	113	57	33.5294
NRCAM	0	genome.wustl.edu	37	7	107832251	107832251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	107832251	107832251	C	T	SNP	NRCAM	ENST00000379028	human	ensembl	74_37	-1	known	missense	c.1825	p.D609N	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NRCAM	HGNC	ENSG00000091129				77	0	0	54	24	30.7692
TFEC	0	genome.wustl.edu	37	7	115624318	115624318	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	115624318	115624318	G	A	SNP	TFEC	ENST00000265440	human	ensembl	74_37	-1	known	missense	c.178	p.H60Y	1.000	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFEC	HGNC	ENSG00000105967				156	0	0	87	44	33.5878
PTPRZ1	0	genome.wustl.edu	37	7	121651647	121651647	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	121651647	121651647	C	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	silent	c.2547	p.T849	0.809	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				115	0	0	52	20	27.7778
IQUB	0	genome.wustl.edu	37	7	123101607	123101607	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	123101607	123101607	C	A	SNP	IQUB	ENST00000324698	human	ensembl	74_37	-1	known	missense	c.1811	p.C604F	1.000	NULL	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675				24	0	0	12	10	45.4545
HYAL4	0	genome.wustl.edu	37	7	123516942	123516942	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	123516942	123516942	C	T	SNP	HYAL4	ENST00000223026	human	ensembl	74_37	+1	known	silent	c.1179	p.N393	0.000	pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL4	HGNC	ENSG00000106302				66	0	0	32	9	21.9512
FLNC	0	genome.wustl.edu	37	7	128482949	128482949	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	128482949	128482949	G	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.2491	p.V831I	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				78	0	0	30	11	26.8293
FLNC	0	genome.wustl.edu	37	7	128486419	128486419	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	128486419	128486419	C	T	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	silent	c.4029	p.G1343	0.517	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				56	0	0	21	16	43.2432
TMEM209	0	genome.wustl.edu	37	7	129813694	129813694	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	129813694	129813694	T	C	SNP	TMEM209	ENST00000397622	human	ensembl	74_37	-1	known	missense	c.1430	p.Q477R	1.000	pfam_Cytochrome_B561-rel	pfam_Cytochrome_B561-rel	-	no_errors	TMEM209	HGNC	ENSG00000146842				196	0	0	125	43	25.5952
CPA5	0	genome.wustl.edu	37	7	129986424	129986424	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	129986424	129986424	G	A	SNP	CPA5	ENST00000355388	human	ensembl	74_37	+1	known	missense	c.98	p.G33D	1.000	NULL	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA5	HGNC	ENSG00000158525				99	0	0	51	25	32.8947
PODXL	0	genome.wustl.edu	37	7	131196153	131196153	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	131196153	131196153	G	A	SNP	PODXL	ENST00000541194	human	ensembl	74_37	-1	known	missense	c.146	p.P49L	0.000	pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567				107	0	0	64	22	25.5814
CALD1	0	genome.wustl.edu	37	7	134643002	134643002	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	134643002	134643002	G	T	SNP	CALD1	ENST00000361388	human	ensembl	74_37	+1	known	missense	c.1335	p.K445N	1.000	pfam_Caldesmon_LSP,prints_Caldesmon	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786				150	1	0.662252	114	21	15.5556
KIAA1549	0	genome.wustl.edu	37	7	138603524	138603524	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	138603524	138603524	A	T	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	nonsense	c.848	p.L283*	0.001	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				30	0	0	9	3	25
FAM115A	0	genome.wustl.edu	37	7	143573697	143573697	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	143573697	143573697	G	A	SNP	FAM115A	ENST00000479870	human	ensembl	74_37	-1	known	missense	c.5	p.A2V	0.980	NULL	NULL	-	no_errors	FAM115A	HGNC	ENSG00000198420				69	0	0	33	14	29.7872
OR2A2	0	genome.wustl.edu	37	7	143806930	143806930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	143806930	143806930	G	A	SNP	OR2A2	ENST00000408979	human	ensembl	74_37	+1	known	missense	c.255	p.M85I	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A2	HGNC	ENSG00000221989				160	1	0.621118	113	25	18.1159
TPK1	0	genome.wustl.edu	37	7	144150649	144150649	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	144150649	144150649	T	C	SNP	TPK1	ENST00000360057	human	ensembl	74_37	-1	known	missense	c.721	p.I241V	1.000	superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk	pfam_TPK_catalytic,pfam_Thiamin_PyroPKinase_B1-bd,superfamily_TPK_catalytic,superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	-	no_errors	TPK1	HGNC	ENSG00000196511				171	0	0	121	39	24.375
CNTNAP2	0	genome.wustl.edu	37	7	147092804	147092804	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	147092804	147092804	C	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	silent	c.1602	p.Y534	0.753	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				169	0	0	87	25	22.3214
CUL1	0	genome.wustl.edu	37	7	148463663	148463663	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	148463663	148463663	G	A	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.800	p.R267H	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				55	0	0	30	11	26.8293
CUL1	0	genome.wustl.edu	37	7	148485686	148485686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	148485686	148485686	G	A	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.1517	p.R506H	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				104	0	0	63	21	25
ZNF783	0	genome.wustl.edu	37	7	148963915	148963915	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	148963915	148963915	C	T	SNP	ZNF783	ENST00000434415	human	ensembl	74_37	+1	known	silent	c.426	p.P142	0.443	superfamily_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF783	HGNC	ENSG00000204946				257	0	0	130	44	25.2874
SSPO	0	genome.wustl.edu	37	7	149475868	149475868	+	Splice_Site	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	149475868	149475868	A	G	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				37	0	0	22	4	15.3846
SSPO	0	genome.wustl.edu	37	7	149515744	149515744	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	149515744	149515744	G	A	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				55	0	0	27	18	40
KCNH2	0	genome.wustl.edu	37	7	150648197	150648197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	150648197	150648197	C	T	SNP	KCNH2	ENST00000262186	human	ensembl	74_37	-1	known	missense	c.1957	p.A653T	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118				46	0	0	27	6	18.1818
GBX1	0	genome.wustl.edu	37	7	150864391	150864391	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	150864391	150864391	C	T	SNP	GBX1	ENST00000297537	human	ensembl	74_37	-1	known	missense	c.245	p.R82H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	GBX1	HGNC	ENSG00000164900				13	0	0	5	3	37.5
NUB1	0	genome.wustl.edu	37	7	151052933	151052933	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	151052933	151052933	G	A	SNP	NUB1	ENST00000568733	human	ensembl	74_37	+1	known	silent	c.567	p.A189	0.000	NULL	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	NUB1	HGNC	ENSG00000013374				20	0	0	8	3	27.2727
WDR86	0	genome.wustl.edu	37	7	151093119	151093119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	151093119	151093119	C	T	SNP	WDR86	ENST00000477459	human	ensembl	74_37	-1	known	missense	c.85	p.A29T	0.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR86	HGNC	ENSG00000187260				21	0	0	8	3	27.2727
GALNT11	0	genome.wustl.edu	37	7	151791456	151791456	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	151791456	151791456	C	T	SNP	GALNT11	ENST00000320311	human	ensembl	74_37	+1	known	silent	c.144	p.H48	0.002	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234				137	0	0	64	26	28.8889
HTR5A	0	genome.wustl.edu	37	7	154863133	154863133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	154863133	154863133	C	T	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	missense	c.524	p.A175V	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219				68	0	0	38	10	20.8333
HTR5A	0	genome.wustl.edu	37	7	154863297	154863297	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	154863297	154863297	C	T	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	missense	c.688	p.R230C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219				54	0	0	27	12	30.7692
NOM1	0	genome.wustl.edu	37	7	156743110	156743110	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	156743110	156743110	A	G	SNP	NOM1	ENST00000275820	human	ensembl	74_37	+1	known	missense	c.679	p.K227E	0.001	NULL	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909				112	0	0	58	30	34.0909
NPVF	0	genome.wustl.edu	37	7	25266466	25266466	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	25266466	25266466	G	A	SNP	NPVF	ENST00000222674	human	ensembl	74_37	-1	known	silent	c.318	p.A106	0.065	NULL	NULL	-	no_errors	NPVF	HGNC	ENSG00000105954				167	0	0	102	42	29.1667
CARD11	0	genome.wustl.edu	37	7	2976742	2976742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	2976742	2976742	G	A	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	missense	c.1270	p.R424W	1.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				62	0	0	25	5	16.6667
PDE1C	0	genome.wustl.edu	37	7	31862802	31862802	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	31862802	31862802	C	A	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	missense	c.1467	p.E489D	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678				55	0	0	41	15	26.7857
NT5C3A	0	genome.wustl.edu	37	7	33057165	33057165	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	33057165	33057165	G	A	SNP	NT5C3A	ENST00000242210	human	ensembl	74_37	-1	known	silent	c.594	p.P198	0.228	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	-	no_errors	NT5C3A	HGNC	ENSG00000122643				111	0	0	69	42	37.8378
DPY19L2P1	0	genome.wustl.edu	37	7	35131480	35131480	+	RNA	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	35131480	35131480	A	T	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				63	0	0	58	4	6.45161
DPY19L2P1	0	genome.wustl.edu	37	7	35131521	35131521	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	35131521	35131521	G	A	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				63	0	0	55	4	6.77966
SDK1	0	genome.wustl.edu	37	7	4056969	4056969	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	4056969	4056969	T	C	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.2587	p.Y863H	0.999	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				51	0	0	27	3	10
HECW1	0	genome.wustl.edu	37	7	43547694	43547694	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	43547694	43547694	G	A	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	missense	c.3830	p.R1277Q	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				88	0	0	46	18	28.125
DBNL	0	genome.wustl.edu	37	7	44096401	44096401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	44096401	44096401	C	T	SNP	DBNL	ENST00000468694	human	ensembl	74_37	+1	known	missense	c.373	p.P125S	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Actin-bd_cofilin/tropomyosin,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DBNL	HGNC	ENSG00000136279				83	0	0	35	11	23.913
CAMK2B	0	genome.wustl.edu	37	7	44286737	44286737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	44286737	44286737	G	A	SNP	CAMK2B	ENST00000523845	human	ensembl	74_37	-1	known	missense	c.275	p.S92L	0.998	pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2B	HGNC	ENSG00000058404				53	0	0	24	16	40
TBRG4	0	genome.wustl.edu	37	7	45145252	45145252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	45145252	45145252	G	A	SNP	TBRG4	ENST00000258770	human	ensembl	74_37	-1	known	missense	c.523	p.R175C	1.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	TBRG4	HGNC	ENSG00000136270				82	0	0	30	16	34.7826
FOXK1	0	genome.wustl.edu	37	7	4799028	4799028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	4799028	4799028	G	A	SNP	FOXK1	ENST00000328914	human	ensembl	74_37	+1	known	missense	c.1498	p.A500T	0.731	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK1	HGNC	ENSG00000164916				21	0	0	14	8	36.3636
ZPBP	0	genome.wustl.edu	37	7	50097612	50097612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	50097612	50097612	G	A	SNP	ZPBP	ENST00000046087	human	ensembl	74_37	-1	known	missense	c.460	p.R154C	0.923	pfam_Sp38-bd,pfscan_Ig-like_dom	pfam_Sp38-bd,pfscan_Ig-like_dom	-	no_errors	ZPBP	HGNC	ENSG00000042813				51	0	0	13	5	27.7778
EGFR	0	genome.wustl.edu	37	7	55266518	55266518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	55266518	55266518	C	T	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	missense	c.2810	p.P937L	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				68	0	0	39	11	22
ZNF716	0	genome.wustl.edu	37	7	57529048	57529048	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	57529048	57529048	A	G	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	missense	c.881	p.K294R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				60	0	0	39	3	7.14286
ZNF716	0	genome.wustl.edu	37	7	57529057	57529057	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	57529057	57529057	C	A	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	missense	c.890	p.T297K	0.914	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				62	0	0	40	3	6.97674
USP42	0	genome.wustl.edu	37	7	6196618	6196618	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	6196618	6196618	G	A	SNP	USP42	ENST00000306177	human	ensembl	74_37	+1	known	missense	c.3875	p.R1292H	0.004	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP42	HGNC	ENSG00000106346				23	0	0	11	6	35.2941
DAGLB	0	genome.wustl.edu	37	7	6456489	6456489	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	6456489	6456489	C	A	SNP	DAGLB	ENST00000297056	human	ensembl	74_37	-1	known	missense	c.1282	p.A428S	1.000	pfam_Lipase_3	pfam_Lipase_3	-	no_errors	DAGLB	HGNC	ENSG00000164535				59	0	0	39	4	9.30233
TYW1	0	genome.wustl.edu	37	7	66548503	66548503	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	66548503	66548503	A	G	SNP	TYW1	ENST00000359626	human	ensembl	74_37	+1	known	missense	c.1361	p.Q454R	1.000	pfam_rSAM	pfam_rSAM,pfam_Flavodoxin/NO_synth,pfam_tRNA_wybutosine-synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1	HGNC	ENSG00000198874				68	0	0	45	12	21.0526
PMS2CL	0	genome.wustl.edu	37	7	6776842	6776842	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	6776842	6776842	G	A	SNP	PMS2CL	ENST00000486256	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	PMS2CL	HGNC	ENSG00000187953				25	0	0	9	7	43.75
ELN	0	genome.wustl.edu	37	7	73477988	73477988	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	73477988	73477988	C	T	SNP	ELN	ENST00000358929	human	ensembl	74_37	+1	known	silent	c.2160	p.V720	0.000	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540				144	0	0	49	30	37.9747
GTF2IRD1	0	genome.wustl.edu	37	7	73932542	73932542	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	73932542	73932542	C	T	SNP	GTF2IRD1	ENST00000265755	human	ensembl	74_37	+1	known	silent	c.495	p.A165	0.256	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704				34	0	0	13	3	18.75
GRM3	0	genome.wustl.edu	37	7	86415922	86415922	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	86415922	86415922	G	A	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	missense	c.814	p.V272M	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				93	0	0	43	19	30.6452
DMTF1	0	genome.wustl.edu	37	7	86795920	86795920	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	86795920	86795920	A	G	SNP	DMTF1	ENST00000331242	human	ensembl	74_37	+1	known	silent	c.231	p.P77	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	DMTF1	HGNC	ENSG00000135164				98	0	0	71	18	20.2247
ABCB4	0	genome.wustl.edu	37	7	87046743	87046743	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	87046743	87046743	A	G	SNP	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	missense	c.2567	p.L856S	0.999	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				52	0	0	48	14	22.5806
HEPACAM2	0	genome.wustl.edu	37	7	92837964	92837964	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	92837964	92837964	A	G	SNP	HEPACAM2	ENST00000394468	human	ensembl	74_37	-1	known	missense	c.941	p.V314A	0.989	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	HEPACAM2	HGNC	ENSG00000188175				101	0	0	59	26	30.5882
GNG11	0	genome.wustl.edu	37	7	93551517	93551517	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	93551517	93551517	G	A	SNP	GNG11	ENST00000248564	human	ensembl	74_37	+1	known	missense	c.68	p.R23H	1.000	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG11	HGNC	ENSG00000127920				21	0	0	10	4	28.5714
PPP1R9A	0	genome.wustl.edu	37	7	94855332	94855332	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	94855332	94855332	C	T	SNP	PPP1R9A	ENST00000289495	human	ensembl	74_37	+1	known	silent	c.1950	p.S650	0.670	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528				76	0	0	50	19	27.5362
LMTK2	0	genome.wustl.edu	37	7	97833426	97833426	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	97833426	97833426	T	C	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	missense	c.4411	p.F1471L	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715				171	0	0	72	19	20.8791
TRRAP	0	genome.wustl.edu	37	7	98519451	98519451	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	98519451	98519451	G	A	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.2698	p.G900S	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				121	0	0	68	25	26.8817
ZKSCAN5	0	genome.wustl.edu	37	7	99129277	99129277	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	99129277	99129277	T	A	SNP	ZKSCAN5	ENST00000326775	human	ensembl	74_37	+1	known	missense	c.1925	p.F642Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652				81	0	0	37	4	9.7561
AP4M1	0	genome.wustl.edu	37	7	99702715	99702715	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	99702715	99702715	C	T	SNP	AP4M1	ENST00000359593	human	ensembl	74_37	+1	known	silent	c.721	p.L241	0.998	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,prints_Clathrin_mu,pfscan_Clathrin_mu_C	-	no_errors	AP4M1	HGNC	ENSG00000221838				63	0	0	27	17	38.6364
TAF6	0	genome.wustl.edu	37	7	99710469	99710469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	99710469	99710469	C	T	SNP	TAF6	ENST00000344095	human	ensembl	74_37	-1	known	missense	c.526	p.G176R	0.994	NULL	pfam_DUF1546,pfam_TAF_TATA-bd,superfamily_Histone-fold,superfamily_ARM-type_fold,smart_TAF_TATA-bd	-	no_errors	TAF6	HGNC	ENSG00000106290				247	0	0	126	55	30.3867
RP1L1	0	genome.wustl.edu	37	8	10467651	10467651	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	10467651	10467651	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.3957	p.A1319	0.001	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				39	0	0	16	6	27.2727
ZFPM2	0	genome.wustl.edu	37	8	106814404	106814404	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	106814404	106814404	G	A	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	silent	c.2094	p.R698	0.986	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				42	0	0	20	9	31.0345
EIF3E	0	genome.wustl.edu	37	8	109241324	109241324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	109241324	109241324	C	T	SNP	EIF3E	ENST00000220849	human	ensembl	74_37	-1	known	missense	c.572	p.R191Q	1.000	pirsf_eIF3e	pfam_eIF3e_N,pfam_PCI_dom,smart_PCI_dom,pirsf_eIF3e	-	no_errors	EIF3E	HGNC	ENSG00000104408				93	0	0	57	17	22.973
XKR6	0	genome.wustl.edu	37	8	11058405	11058405	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	11058405	11058405	C	T	SNP	XKR6	ENST00000416569	human	ensembl	74_37	-1	known	nonsense	c.444	p.W148*	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044				86	0	0	49	30	37.9747
KCNV1	0	genome.wustl.edu	37	8	110986292	110986292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	110986292	110986292	G	A	SNP	KCNV1	ENST00000297404	human	ensembl	74_37	-1	known	missense	c.326	p.A109V	0.990	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794				33	0	0	7	10	58.8235
DEPTOR	0	genome.wustl.edu	37	8	121021305	121021305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	121021305	121021305	G	A	SNP	DEPTOR	ENST00000286234	human	ensembl	74_37	+1	known	missense	c.1034	p.R345Q	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DEP_dom,superfamily_PDZ,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ	-	no_errors	DEPTOR	HGNC	ENSG00000155792				59	0	0	24	5	17.2414
COL14A1	0	genome.wustl.edu	37	8	121256232	121256232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	121256232	121256232	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	missense	c.2464	p.A822T	0.568	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				74	0	0	39	22	36.0656
ZHX1	0	genome.wustl.edu	37	8	124267572	124267572	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	124267572	124267572	G	A	SNP	ZHX1	ENST00000297857	human	ensembl	74_37	-1	known	silent	c.615	p.D205	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156				98	0	0	51	16	23.8806
MYC	0	genome.wustl.edu	37	8	128752802	128752802	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	128752802	128752802	G	A	SNP	MYC	ENST00000377970	human	ensembl	74_37	+1	known	silent	c.963	p.Q321	1.000	pfam_Tscrpt_reg_Myc_N,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_Myc-LZ,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYC	HGNC	ENSG00000136997				44	0	0	41	3	6.81818
DLC1	0	genome.wustl.edu	37	8	12946207	12946207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	12946207	12946207	C	T	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.4081	p.E1361K	1.000	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				61	0	0	26	15	36.5854
ADCY8	0	genome.wustl.edu	37	8	131916289	131916289	+	Splice_Site	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	131916289	131916289	C	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	splice_site	c.1641-1	e7-1	1.000	-	-	-	no_errors	ADCY8	HGNC	ENSG00000155897				126	0	0	110	22	16.6667
OC90	0	genome.wustl.edu	37	8	133053404	133053404	+	Splice_Site	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	133053404	133053404	C	T	SNP	OC90	ENST00000443356	human	ensembl	74_37	-1	known	splice_site	c.345-1	e5-1	1.000	-	-	-	no_errors	OC90	Uniprot_gn	ENSG00000258417				72	0	0	26	20	43.4783
TG	0	genome.wustl.edu	37	8	133885421	133885421	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	133885421	133885421	A	G	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.593	p.N198S	1.000	superfamily_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				48	0	0	33	7	17.5
WISP1	0	genome.wustl.edu	37	8	134232915	134232915	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	134232915	134232915	C	T	SNP	WISP1	ENST00000250160	human	ensembl	74_37	+1	known	silent	c.441	p.I147	0.990	pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415				156	0	0	73	26	26.2626
AGO2	0	genome.wustl.edu	37	8	141570558	141570558	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	141570558	141570558	G	A	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	silent	c.570	p.N190	1.000	pfam_DUF1785,superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				97	0	0	54	4	6.89655
PTK2	0	genome.wustl.edu	37	8	141762399	141762399	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	141762399	141762399	G	A	SNP	PTK2	ENST00000395218	human	ensembl	74_37	-1	known	missense	c.1349	p.A450V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398				45	0	0	30	12	28.5714
BAI1	0	genome.wustl.edu	37	8	143566074	143566074	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	143566074	143566074	G	A	SNP	BAI1	ENST00000323289	human	ensembl	74_37	+1	known	missense	c.2257	p.G753S	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790				21	0	0	12	2	14.2857
ZNF696	0	genome.wustl.edu	37	8	144378511	144378511	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	144378511	144378511	G	A	SNP	ZNF696	ENST00000330143	human	ensembl	74_37	+1	known	silent	c.666	p.S222	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF696	HGNC	ENSG00000185730				15	0	0	4	4	50
OPLAH	0	genome.wustl.edu	37	8	145112983	145112983	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	145112983	145112983	C	T	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	missense	c.1018	p.V340I	0.249	pfam_Hydantoinase_A	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				96	0	0	44	24	35.2941
SHARPIN	0	genome.wustl.edu	37	8	145160714	145160714	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	145160714	145160714	G	A	SNP	SHARPIN	ENST00000533184	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SHARPIN	HGNC	ENSG00000179526				117	0	0	40	23	36.5079
TONSL	0	genome.wustl.edu	37	8	145666115	145666115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	145666115	145666115	C	T	SNP	TONSL	ENST00000409379	human	ensembl	74_37	-1	known	missense	c.1150	p.G384S	0.995	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TONSL	HGNC	ENSG00000160949				103	0	0	40	15	27.2727
CYHR1	0	genome.wustl.edu	37	8	145689777	145689777	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	145689777	145689777	G	A	SNP	CYHR1	ENST00000306145	human	ensembl	74_37	-1	known	silent	c.312	p.G104	0.858	NULL	NULL	-	no_errors	CYHR1	HGNC	ENSG00000187954				68	0	0	27	14	34.1463
LRRC14	0	genome.wustl.edu	37	8	145746374	145746374	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	145746374	145746374	A	G	SNP	LRRC14	ENST00000292524	human	ensembl	74_37	+1	known	missense	c.994	p.S332G	0.893	NULL	NULL	-	no_errors	LRRC14	HGNC	ENSG00000160959				183	0	0	84	40	32.2581
MTMR7	0	genome.wustl.edu	37	8	17230724	17230724	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	17230724	17230724	C	T	SNP	MTMR7	ENST00000180173	human	ensembl	74_37	-1	known	missense	c.50	p.R17Q	0.995	NULL	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR7	HGNC	ENSG00000003987				39	0	0	34	7	17.0732
ARHGEF10	0	genome.wustl.edu	37	8	1808263	1808263	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	1808263	1808263	G	T	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	missense	c.466	p.G156C	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				99	0	0	47	24	33.8028
LPL	0	genome.wustl.edu	37	8	19811791	19811791	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	19811791	19811791	G	A	SNP	LPL	ENST00000311322	human	ensembl	74_37	+1	known	silent	c.702	p.P234	0.813	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,tigrfam_Lipo_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipo_Lipase,prints_Lipase,pfscan_PLAT/LH2_dom,tigrfam_Lipo_Lipase	-	no_errors	LPL	HGNC	ENSG00000175445				89	0	0	51	22	30.137
NEFL	0	genome.wustl.edu	37	8	24811732	24811732	+	RNA	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	24811732	24811732	C	T	SNP	NEFL	ENST00000221169	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725				194	0	0	105	52	33.121
DOCK5	0	genome.wustl.edu	37	8	25159904	25159904	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	25159904	25159904	G	T	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	missense	c.910	p.G304C	1.000	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				27	0	0	13	2	13.3333
EBF2	0	genome.wustl.edu	37	8	25890600	25890600	+	Splice_Site	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	25890600	25890600	C	T	SNP	EBF2	ENST00000520164	human	ensembl	74_37	-1	known	splice_site	c.551+1	e6+1	1.000	-	-	-	no_errors	EBF2	HGNC	ENSG00000221818				113	0	0	67	6	8.21918
SDAD1P1	0	genome.wustl.edu	37	8	26238133	26238133	+	RNA	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	26238133	26238133	T	C	SNP	SDAD1P1	ENST00000519902	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDAD1P1	HGNC	ENSG00000228451				33	0	0	5	8	61.5385
PNMA2	0	genome.wustl.edu	37	8	26365784	26365784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	26365784	26365784	C	T	SNP	PNMA2	ENST00000522362	human	ensembl	74_37	-1	known	missense	c.488	p.R163Q	0.989	NULL	pfam_Retrotrans_gag_dom	-	no_errors	PNMA2	HGNC	ENSG00000240694				79	0	0	41	18	30.5085
ADRA1A	0	genome.wustl.edu	37	8	26721683	26721683	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	26721683	26721683	C	A	SNP	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	missense	c.804	p.K268N	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907				55	0	0	19	8	29.6296
ELP3	0	genome.wustl.edu	37	8	27965470	27965470	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	27965470	27965470	A	G	SNP	ELP3	ENST00000256398	human	ensembl	74_37	+1	known	missense	c.370	p.T124A	0.987	pfam_rSAM,smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,tigrfam_Hist_AcTrfase_ELP3	pfam_rSAM,pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,pfscan_GNAT_dom,tigrfam_Hist_AcTrfase_ELP3	-	no_errors	ELP3	HGNC	ENSG00000134014				49	0	0	46	6	11.5385
TEX15	0	genome.wustl.edu	37	8	30703130	30703130	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	30703130	30703130	T	C	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.3404	p.Q1135R	0.454	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				67	0	0	53	6	10.1695
CSMD1	0	genome.wustl.edu	37	8	3245111	3245111	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	3245111	3245111	G	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.2690	p.T897N	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				17	0	0	4	2	33.3333
KCNU1	0	genome.wustl.edu	37	8	36768479	36768479	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	36768479	36768479	C	T	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	missense	c.2363	p.A788V	0.063	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				121	0	0	76	25	24.7525
ASH2L	0	genome.wustl.edu	37	8	37986395	37986395	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	37986395	37986395	G	A	SNP	ASH2L	ENST00000343823	human	ensembl	74_37	+1	known	missense	c.1453	p.V485I	0.555	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	ASH2L	HGNC	ENSG00000129691				363	0	0	200	97	32.6599
LETM2	0	genome.wustl.edu	37	8	38257862	38257862	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	38257862	38257862	A	T	SNP	LETM2	ENST00000379957	human	ensembl	74_37	+1	known	missense	c.718	p.M240L	1.000	pfam_LETM1	pfam_LETM1	-	no_errors	LETM2	HGNC	ENSG00000165046				78	0	0	51	9	15
FGFR1	0	genome.wustl.edu	37	8	38271463	38271463	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	38271463	38271463	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	74_37	-1	known	silent	c.2358	p.D786	1.000	pirsf_FGF_rcpt_fam,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782				40	0	0	30	5	14.2857
SLC20A2	0	genome.wustl.edu	37	8	42302235	42302235	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	42302235	42302235	A	G	SNP	SLC20A2	ENST00000342228	human	ensembl	74_37	-1	known	missense	c.659	p.F220S	0.002	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A2	HGNC	ENSG00000168575				59	0	0	24	10	29.4118
CHRNB3	0	genome.wustl.edu	37	8	42587314	42587314	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	42587314	42587314	G	A	SNP	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	silent	c.864	p.S288	0.103	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432				142	0	0	88	29	24.7863
RNF170	0	genome.wustl.edu	37	8	42725159	42725159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	42725159	42725159	G	A	SNP	RNF170	ENST00000527424	human	ensembl	74_37	-1	known	missense	c.310	p.H104Y	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_DUF1232,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF170	HGNC	ENSG00000120925				46	0	0	32	8	20
FNTA	0	genome.wustl.edu	37	8	42940419	42940419	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	42940419	42940419	G	T	SNP	FNTA	ENST00000302279	human	ensembl	74_37	+1	known	missense	c.1134	p.Q378H	1.000	NULL	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	-	no_errors	FNTA	HGNC	ENSG00000168522				71	0	0	26	12	31.5789
EFCAB1	0	genome.wustl.edu	37	8	49647735	49647735	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	49647735	49647735	G	A	SNP	EFCAB1	ENST00000521002	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EFCAB1	HGNC	ENSG00000034239				78	0	0	50	19	27.5362
TOX	0	genome.wustl.edu	37	8	59750825	59750825	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	59750825	59750825	G	T	SNP	TOX	ENST00000361421	human	ensembl	74_37	-1	known	missense	c.739	p.P247T	1.000	superfamily_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX	HGNC	ENSG00000198846				89	0	0	44	14	24.1379
BHLHE22	0	genome.wustl.edu	37	8	65494257	65494257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	65494257	65494257	C	T	SNP	BHLHE22	ENST00000321870	human	ensembl	74_37	+1	known	missense	c.910	p.R304W	1.000	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE22	HGNC	ENSG00000180828				13	0	0	9	5	35.7143
RRS1	0	genome.wustl.edu	37	8	67342429	67342429	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	67342429	67342429	G	T	SNP	RRS1	ENST00000320270	human	ensembl	74_37	+1	known	nonsense	c.1063	p.G355*	0.998	NULL	pfam_Ribosom_reg	-	no_errors	RRS1	HGNC	ENSG00000179041				143	0	0	96	16	14.2857
NCOA2	0	genome.wustl.edu	37	8	71069388	71069388	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	71069388	71069388	G	T	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	silent	c.1212	p.A404	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				43	0	0	17	4	19.0476
TRPA1	0	genome.wustl.edu	37	8	72950232	72950232	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	72950232	72950232	G	A	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	nonsense	c.2371	p.Q791*	0.972	pfam_Ion_trans_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				38	0	0	24	5	17.2414
TRPA1	0	genome.wustl.edu	37	8	72969971	72969971	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	72969971	72969971	T	C	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	silent	c.1074	p.V358	0.975	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				47	0	0	30	10	25
ZFHX4	0	genome.wustl.edu	37	8	77765588	77765588	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	77765588	77765588	T	C	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.6431	p.L2144P	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				26	0	0	6	2	25
ZFHX4	0	genome.wustl.edu	37	8	77768464	77768464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	77768464	77768464	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.9307	p.G3103S	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				87	0	0	60	5	7.69231
ZC2HC1A	0	genome.wustl.edu	37	8	79609723	79609723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	79609723	79609723	G	A	SNP	ZC2HC1A	ENST00000263849	human	ensembl	74_37	+1	known	missense	c.586	p.A196T	0.003	NULL	NULL	-	no_errors	ZC2HC1A	HGNC	ENSG00000104427				56	0	0	55	4	6.77966
RUNX1T1	0	genome.wustl.edu	37	8	93074895	93074895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	93074895	93074895	G	A	SNP	RUNX1T1	ENST00000517493	human	ensembl	74_37	-1	known	missense	c.131	p.A44V	1.000	NULL	NULL	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				36	0	0	22	13	37.1429
PDP1	0	genome.wustl.edu	37	8	94934398	94934398	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	94934398	94934398	G	A	SNP	PDP1	ENST00000396200	human	ensembl	74_37	+1	known	silent	c.186	p.S62	0.006	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PDP1	HGNC	ENSG00000164951				77	0	0	36	12	25
TNKS	0	genome.wustl.edu	37	8	9567764	9567764	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	9567764	9567764	A	G	SNP	TNKS	ENST00000520408	human	ensembl	74_37	+1	putative	missense	c.1783	p.S595G	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				34	0	0	14	5	26.3158
COL15A1	0	genome.wustl.edu	37	9	101824544	101824544	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	101824544	101824544	C	T	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	silent	c.3549	p.P1183	1.000	pfam_Collagenase_NC10/endostatin	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				100	0	0	77	5	6.09756
TMEM38B	0	genome.wustl.edu	37	9	108536306	108536306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	108536306	108536306	C	T	SNP	TMEM38B	ENST00000374692	human	ensembl	74_37	+1	known	missense	c.821	p.P274L	0.000	NULL	pfam_TRIC_channel	-	no_errors	TMEM38B	HGNC	ENSG00000095209				49	0	0	41	12	22.6415
PTPN3	0	genome.wustl.edu	37	9	112199206	112199206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	112199206	112199206	G	A	SNP	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	missense	c.632	p.A211V	0.994	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Band_41_fam,pfscan_FERM_domain	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159				67	0	0	42	15	26.3158
SVEP1	0	genome.wustl.edu	37	9	113148241	113148241	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	113148241	113148241	C	A	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.10174	p.G3392C	0.995	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				57	0	0	28	14	33.3333
C9orf43	0	genome.wustl.edu	37	9	116188008	116188008	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	116188008	116188008	A	G	SNP	C9orf43	ENST00000288462	human	ensembl	74_37	+1	known	missense	c.1028	p.Y343C	0.003	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653				80	0	0	42	20	32.2581
COL27A1	0	genome.wustl.edu	37	9	116999956	116999956	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	116999956	116999956	C	G	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.2688	p.D896E	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				90	0	0	38	16	29.6296
PAPPA	0	genome.wustl.edu	37	9	118950298	118950298	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	118950298	118950298	G	A	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	silent	c.1281	p.E427	1.000	pfam_Notch_dom,smart_Notch_dom	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				67	0	0	35	22	38.5965
ASTN2	0	genome.wustl.edu	37	9	120176844	120176844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	120176844	120176844	T	C	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.373	p.N125D	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				44	0	0	17	8	32
TLR4	0	genome.wustl.edu	37	9	120474741	120474741	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	120474741	120474741	A	G	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.335	p.N112S	1.000	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				39	0	0	27	6	18.1818
CDK5RAP2	0	genome.wustl.edu	37	9	123171411	123171411	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	123171411	123171411	A	G	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.4598	p.L1533P	0.998	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				94	0	0	51	21	29.1667
CDK5RAP2	0	genome.wustl.edu	37	9	123222895	123222895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	123222895	123222895	G	A	SNP	CDK5RAP2	ENST00000480112	human	ensembl	74_37	-1	known	missense	c.2234	p.T745M	0.000	NULL	pfam_Spindle_assoc,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				85	0	0	42	20	32.2581
FBXW2	0	genome.wustl.edu	37	9	123540802	123540802	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	123540802	123540802	T	G	SNP	FBXW2	ENST00000608872	human	ensembl	74_37	-1	known	missense	c.512	p.K171T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW2	HGNC	ENSG00000119402				39	0	0	18	2	10
DAB2IP	0	genome.wustl.edu	37	9	124519334	124519334	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	124519334	124519334	G	A	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	silent	c.405	p.E135	1.000	smart_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				96	0	0	51	5	8.92857
TTLL11	0	genome.wustl.edu	37	9	124751596	124751596	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	124751596	124751596	T	C	SNP	TTLL11	ENST00000321582	human	ensembl	74_37	-1	known	missense	c.1417	p.K473E	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL11	HGNC	ENSG00000175764				75	0	0	61	4	6.15385
RC3H2	0	genome.wustl.edu	37	9	125621307	125621307	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	125621307	125621307	C	T	SNP	RC3H2	ENST00000357244	human	ensembl	74_37	-1	known	missense	c.1924	p.V642I	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586				77	0	0	37	19	33.9286
CRB2	0	genome.wustl.edu	37	9	126133051	126133051	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	126133051	126133051	C	T	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	silent	c.1719	p.D573	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204				97	0	0	37	21	36.2069
CRB2	0	genome.wustl.edu	37	9	126135794	126135794	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	126135794	126135794	T	C	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	missense	c.2984	p.F995S	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204				19	0	0	7	5	41.6667
NR5A1	0	genome.wustl.edu	37	9	127255348	127255348	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	127255348	127255348	G	A	SNP	NR5A1	ENST00000373588	human	ensembl	74_37	-1	known	silent	c.951	p.H317	0.989	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A1	HGNC	ENSG00000136931				25	0	0	18	4	18.1818
PBX3	0	genome.wustl.edu	37	9	128723070	128723070	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	128723070	128723070	C	T	SNP	PBX3	ENST00000373489	human	ensembl	74_37	+1	known	silent	c.951	p.H317	0.735	NULL	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX3	HGNC	ENSG00000167081				58	0	0	26	8	23.5294
PTRH1	0	genome.wustl.edu	37	9	130476255	130476255	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	130476255	130476255	G	A	SNP	PTRH1	ENST00000456267	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	PTRH1	HGNC	ENSG00000187024				17	0	0	12	5	29.4118
GLE1	0	genome.wustl.edu	37	9	131285932	131285932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	131285932	131285932	G	A	SNP	GLE1	ENST00000309971	human	ensembl	74_37	+1	known	missense	c.704	p.R235Q	0.902	NULL	pfam_GLE1	-	no_errors	GLE1	HGNC	ENSG00000119392				102	0	0	45	14	23.7288
SPTAN1	0	genome.wustl.edu	37	9	131371238	131371238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	131371238	131371238	G	A	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	missense	c.4577	p.R1526H	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				189	0	0	113	63	35.7955
C9orf50	0	genome.wustl.edu	37	9	132375517	132375517	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	132375517	132375517	T	A	SNP	C9orf50	ENST00000372478	human	ensembl	74_37	-1	known	missense	c.1057	p.T353S	0.044	NULL	NULL	-	no_errors	C9orf50	HGNC	ENSG00000179058				66	0	0	33	16	32.6531
ASS1	0	genome.wustl.edu	37	9	133355186	133355186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	133355186	133355186	G	A	SNP	ASS1	ENST00000352480	human	ensembl	74_37	+1	known	missense	c.772	p.A258T	0.992	pfam_Arginosuc_synth,tigrfam_Arginosuc_synth	pfam_Arginosuc_synth,pfam_QueC,tigrfam_Arginosuc_synth	-	no_errors	ASS1	HGNC	ENSG00000130707				102	0	0	44	18	29.0323
PRRC2B	0	genome.wustl.edu	37	9	134357808	134357808	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	134357808	134357808	G	C	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.5034	p.E1678D	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				234	0	0	134	33	19.7605
GTF3C5	0	genome.wustl.edu	37	9	135919198	135919198	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	135919198	135919198	C	T	SNP	GTF3C5	ENST00000372108	human	ensembl	74_37	+1	known	missense	c.457	p.R153W	1.000	pfam_TF_IIIC_su-5	pfam_TF_IIIC_su-5	-	no_errors	GTF3C5	HGNC	ENSG00000148308				132	0	0	74	28	27.451
ADAMTS13	0	genome.wustl.edu	37	9	136321690	136321690	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	136321690	136321690	G	A	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	silent	c.3741	p.R1247	0.974	superfamily_CUB_dom	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				37	0	0	21	3	12.5
DBH	0	genome.wustl.edu	37	9	136501526	136501526	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	136501526	136501526	C	T	SNP	DBH	ENST00000393056	human	ensembl	74_37	+1	known	silent	c.33	p.P11	0.151	NULL	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454				95	0	0	34	18	34.6154
FCN2	0	genome.wustl.edu	37	9	137779089	137779089	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	137779089	137779089	G	T	SNP	FCN2	ENST00000291744	human	ensembl	74_37	+1	known	missense	c.770	p.C257F	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FCN2	HGNC	ENSG00000160339				107	0	0	67	17	20.2381
PPP1R26	0	genome.wustl.edu	37	9	138376418	138376418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	138376418	138376418	C	T	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	missense	c.62	p.P21L	0.353	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				90	0	0	28	13	31.7073
UBAC1	0	genome.wustl.edu	37	9	138839764	138839764	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	138839764	138839764	G	A	SNP	UBAC1	ENST00000471163	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBAC1	HGNC	ENSG00000130560				19	0	0	9	3	25
FAM69B	0	genome.wustl.edu	37	9	139617653	139617653	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	139617653	139617653	G	A	SNP	FAM69B	ENST00000371692	human	ensembl	74_37	+1	known	silent	c.723	p.A241	0.032	pfam_FAM69_kinase_dom	pfam_FAM69_kinase_dom	-	no_errors	FAM69B	HGNC	ENSG00000165716				85	0	0	54	4	6.89655
LCN12	0	genome.wustl.edu	37	9	139847269	139847269	+	RNA	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	139847269	139847269	G	T	SNP	LCN12	ENST00000495410	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LCN12	HGNC	ENSG00000184925				32	0	0	11	4	26.6667
PNPLA7	0	genome.wustl.edu	37	9	140438216	140438216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	140438216	140438216	G	A	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.325	p.R109W	0.997	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				116	0	0	79	32	28.8288
CACNA1B	0	genome.wustl.edu	37	9	140846745	140846745	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	140846745	140846745	A	G	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.986	p.N329S	1.000	pfam_Ion_trans_dom,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				62	0	0	37	8	17.7778
FREM1	0	genome.wustl.edu	37	9	14784441	14784441	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	14784441	14784441	G	A	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	nonsense	c.4372	p.Q1458*	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				67	0	0	48	9	15.7895
FREM1	0	genome.wustl.edu	37	9	14842486	14842486	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	14842486	14842486	C	T	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	silent	c.1569	p.P523	0.099	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				115	1	0.862069	61	19	23.75
CBWD1	0	genome.wustl.edu	37	9	164038	164038	+	Splice_Site	SNP	C	C	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	164038	164038	C	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	splice_site	c.431-1	e5-1	1.000	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785				59	0	0	42	4	8.69565
BNC2	0	genome.wustl.edu	37	9	16437444	16437444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	16437444	16437444	G	A	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.748	p.R250W	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				71	0	0	30	10	25
CNTLN	0	genome.wustl.edu	37	9	17330768	17330768	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	17330768	17330768	C	T	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	nonsense	c.1480	p.R494*	0.043	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				94	0	0	34	17	33.3333
IFNB1	0	genome.wustl.edu	37	9	21077644	21077644	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	21077644	21077644	G	A	SNP	IFNB1	ENST00000380232	human	ensembl	74_37	-1	known	silent	c.225	p.D75	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNB1	HGNC	ENSG00000171855				124	0	0	57	33	36.6667
IFNA4	0	genome.wustl.edu	37	9	21187385	21187385	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	21187385	21187385	T	G	SNP	IFNA4	ENST00000421715	human	ensembl	74_37	-1	known	missense	c.146	p.H49P	0.002	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA4	HGNC	ENSG00000236637				141	0	0	141	37	20.7865
IFNA13	0	genome.wustl.edu	37	9	21367439	21367439	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	21367439	21367439	A	G	SNP	IFNA13	ENST00000449498	human	ensembl	74_37	-1	known	nonstop	c.571	p.*191Q	0.000	NULL	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA13	HGNC	ENSG00000233816				202	1	0.492611	106	40	27.3973
VLDLR	0	genome.wustl.edu	37	9	2646469	2646469	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	2646469	2646469	T	C	SNP	VLDLR	ENST00000382100	human	ensembl	74_37	+1	known	silent	c.1620	p.A540	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852				68	0	0	51	16	23.8806
VCP	0	genome.wustl.edu	37	9	35059794	35059794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	35059794	35059794	C	T	SNP	VCP	ENST00000358901	human	ensembl	74_37	-1	known	missense	c.1700	p.R567H	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_AAA_ATPase_CDC48	pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase,tigrfam_AAA_ATPase_CDC48	-	no_errors	VCP	HGNC	ENSG00000165280				90	0	0	55	12	17.9104
ATP8B5P	0	genome.wustl.edu	37	9	35449925	35449925	+	RNA	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	35449925	35449925	T	C	SNP	ATP8B5P	ENST00000430846	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	ATP8B5P	HGNC	ENSG00000179766				39	0	0	17	6	26.087
NPR2	0	genome.wustl.edu	37	9	35792815	35792815	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	35792815	35792815	G	A	SNP	NPR2	ENST00000342694	human	ensembl	74_37	+1	known	missense	c.410	p.R137H	0.462	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899				138	0	0	68	36	34.6154
CCIN	0	genome.wustl.edu	37	9	36170020	36170020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	36170020	36170020	G	A	SNP	CCIN	ENST00000335119	human	ensembl	74_37	+1	known	missense	c.521	p.R174H	1.000	pfam_BACK,smart_BACK	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	CCIN	HGNC	ENSG00000185972				49	0	0	31	17	35.4167
SPATA31A6	0	genome.wustl.edu	37	9	43627207	43627207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	43627207	43627207	C	T	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.1480	p.E494K	0.001	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				591	1	0.168919	335	117	25.885
SLC1A1	0	genome.wustl.edu	37	9	4576594	4576594	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	4576594	4576594	C	T	SNP	SLC1A1	ENST00000262352	human	ensembl	74_37	+1	known	missense	c.1024	p.R342C	1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A1	HGNC	ENSG00000106688				83	0	0	44	28	38.8889
JAK2	0	genome.wustl.edu	37	9	5080260	5080260	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	5080260	5080260	T	C	SNP	JAK2	ENST00000381652	human	ensembl	74_37	+1	known	silent	c.2163	p.P721	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968				175	0	0	120	12	9.09091
SMC5	0	genome.wustl.edu	37	9	72962062	72962062	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	72962062	72962062	G	A	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	silent	c.2649	p.T883	0.314	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887				26	0	0	31	6	16.2162
PCSK5	0	genome.wustl.edu	37	9	78911644	78911644	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	78911644	78911644	A	C	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	missense	c.3386	p.E1129A	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				41	0	0	24	8	25
PTPRD	0	genome.wustl.edu	37	9	8521488	8521488	+	Silent	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	8521488	8521488	G	A	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	silent	c.750	p.G250	0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				113	0	0	54	29	34.9398
AGTPBP1	0	genome.wustl.edu	37	9	88203240	88203240	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	88203240	88203240	A	G	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	missense	c.2912	p.L971S	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049				50	0	0	16	11	40.7407
AGTPBP1	0	genome.wustl.edu	37	9	88287483	88287483	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	88287483	88287483	G	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	nonsense	c.706	p.R236*	1.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049				61	0	0	43	20	31.746
IARS	0	genome.wustl.edu	37	9	95030531	95030531	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	95030531	95030531	T	C	SNP	IARS	ENST00000375643	human	ensembl	74_37	-1	known	silent	c.1356	p.A452	0.884	pfam_aa-tRNA-synth_Ia,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS	HGNC	ENSG00000196305				148	1	0.671141	99	46	31.7241
FGD3	0	genome.wustl.edu	37	9	95768325	95768325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	95768325	95768325	G	A	SNP	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	missense	c.700	p.G234R	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				227	0	0	100	55	35.4839
PTCH1	0	genome.wustl.edu	37	9	98241295	98241295	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	98241295	98241295	C	A	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.1202	p.R401M	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				51	0	0	16	15	48.3871
HABP4	0	genome.wustl.edu	37	9	99220669	99220669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	99220669	99220669	C	T	SNP	HABP4	ENST00000375249	human	ensembl	74_37	+1	known	missense	c.358	p.R120W	1.000	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	HABP4	HGNC	ENSG00000130956				157	0	0	87	26	23.0088
CLCN4	0	genome.wustl.edu	37	X	10166025	10166025	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	10166025	10166025	C	T	SNP	CLCN4	ENST00000380833	human	ensembl	74_37	+1	known	missense	c.479	p.A160V	1.000	superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-4	-	no_errors	CLCN4	HGNC	ENSG00000073464				59	0	0	36	17	32.0755
MID1	0	genome.wustl.edu	37	X	10437743	10437743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	10437743	10437743	C	T	SNP	MID1	ENST00000317552	human	ensembl	74_37	-1	known	missense	c.1279	p.V427I	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871				76	0	0	16	22	57.8947
COL4A5	0	genome.wustl.edu	37	X	107925066	107925066	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	107925066	107925066	C	T	SNP	COL4A5	ENST00000328300	human	ensembl	74_37	+1	known	silent	c.4164	p.G1388	0.010	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153				30	0	0	7	9	56.25
CHRDL1	0	genome.wustl.edu	37	X	109924819	109924819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	109924819	109924819	C	T	SNP	CHRDL1	ENST00000372042	human	ensembl	74_37	-1	known	missense	c.1047	p.M349I	0.998	NULL	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	-	no_errors	CHRDL1	HGNC	ENSG00000101938				62	0	0	27	17	38.6364
ALG13	0	genome.wustl.edu	37	X	110928333	110928333	+	Splice_Site	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	110928333	110928333	T	C	SNP	ALG13	ENST00000251943	human	ensembl	74_37	+1	known	splice_site	c.71+2	e1+2	1.000	-	-	-	no_errors	ALG13	HGNC	ENSG00000101901				171	0	0	111	10	8.26446
LUZP4	0	genome.wustl.edu	37	X	114541133	114541133	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	114541133	114541133	G	T	SNP	LUZP4	ENST00000371920	human	ensembl	74_37	+1	known	nonsense	c.706	p.G236*	0.001	NULL	NULL	-	no_errors	LUZP4	HGNC	ENSG00000102021				69	0	0	42	4	8.69565
IL13RA1	0	genome.wustl.edu	37	X	117910472	117910472	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	117910472	117910472	C	G	SNP	IL13RA1	ENST00000371666	human	ensembl	74_37	+1	known	missense	c.1189	p.L397V	0.998	NULL	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA1	HGNC	ENSG00000131724				12	0	0	2	9	81.8182
ZCCHC12	0	genome.wustl.edu	37	X	117959502	117959502	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	117959502	117959502	C	T	SNP	ZCCHC12	ENST00000310164	human	ensembl	74_37	+1	known	missense	c.295	p.R99C	0.978	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460				159	0	0	53	37	41.1111
SOWAHD	0	genome.wustl.edu	37	X	118893547	118893547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	118893547	118893547	G	A	SNP	SOWAHD	ENST00000343905	human	ensembl	74_37	+1	known	missense	c.917	p.R306H	0.666	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHD	HGNC	ENSG00000187808				30	0	0	9	17	65.3846
CT47B1	0	genome.wustl.edu	37	X	120009386	120009386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	120009386	120009386	G	A	SNP	CT47B1	ENST00000371311	human	ensembl	74_37	-1	known	missense	c.139	p.P47S	0.000	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446				94	0	0	40	8	16.6667
STAG2	0	genome.wustl.edu	37	X	123205131	123205131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	123205131	123205131	G	A	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	missense	c.2491	p.D831N	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				71	0	0	17	24	58.5366
ZNF280C	0	genome.wustl.edu	37	X	129380891	129380891	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	129380891	129380891	C	A	SNP	ZNF280C	ENST00000370978	human	ensembl	74_37	-1	known	missense	c.120	p.E40D	0.944	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277				106	0	0	24	39	61.9048
SAGE1	0	genome.wustl.edu	37	X	134989590	134989590	+	Silent	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	134989590	134989590	G	T	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	silent	c.996	p.P332	0.000	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				71	0	0	29	28	49.1228
ATP11C	0	genome.wustl.edu	37	X	138811117	138811117	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	138811117	138811117	G	A	SNP	ATP11C	ENST00000361648	human	ensembl	74_37	-1	known	missense	c.3302	p.P1101L	0.675	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11C	HGNC	ENSG00000101974				29	0	0	10	7	41.1765
LDOC1	0	genome.wustl.edu	37	X	140271029	140271029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	140271029	140271029	C	T	SNP	LDOC1	ENST00000370526	human	ensembl	74_37	-1	known	missense	c.178	p.E60K	0.998	NULL	NULL	-	no_errors	LDOC1	HGNC	ENSG00000182195				37	0	0	5	7	58.3333
SLITRK4	0	genome.wustl.edu	37	X	142718541	142718541	+	Silent	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	142718541	142718541	A	T	SNP	SLITRK4	ENST00000338017	human	ensembl	74_37	-1	known	silent	c.384	p.L128	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542				53	0	0	18	24	57.1429
CSF2RA	0	genome.wustl.edu	37	X	1428506	1428506	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	1428506	1428506	G	A	SNP	CSF2RA	ENST00000498153	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	CSF2RA	HGNC	ENSG00000198223				65	0	0	27	9	25
AFF2	0	genome.wustl.edu	37	X	147891442	147891442	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	147891442	147891442	C	T	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	missense	c.1084	p.R362W	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				51	0	0	51	3	5.55556
MOSPD2	0	genome.wustl.edu	37	X	14933801	14933801	+	Silent	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	14933801	14933801	A	G	SNP	MOSPD2	ENST00000380492	human	ensembl	74_37	+1	known	silent	c.1101	p.T367	0.373	pfam_MSP_dom,superfamily_PapD-like,pfscan_MSP_dom	pfam_CRAL-TRIO_dom,pfam_MSP_dom,superfamily_CRAL-TRIO_dom,superfamily_PapD-like,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_MSP_dom	-	no_errors	MOSPD2	HGNC	ENSG00000130150				76	0	0	89	5	5.31915
GABRQ	0	genome.wustl.edu	37	X	151821314	151821314	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	151821314	151821314	G	T	SNP	GABRQ	ENST00000370306	human	ensembl	74_37	+1	known	missense	c.1469	p.G490V	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402				71	0	0	29	28	49.1228
PDZD4	0	genome.wustl.edu	37	X	153071027	153071027	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	153071027	153071027	G	A	SNP	PDZD4	ENST00000164640	human	ensembl	74_37	-1	known	missense	c.584	p.A195V	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840				73	0	0	13	34	72.3404
RPL10	0	genome.wustl.edu	37	X	153627879	153627879	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	153627879	153627879	A	G	SNP	RPL10	ENST00000344746	human	ensembl	74_37	+1	known	missense	c.134	p.E45G	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10	HGNC	ENSG00000147403				94	0	0	60	5	7.69231
SPRY3	0	genome.wustl.edu	37	X	155004072	155004072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	155004072	155004072	G	A	SNP	SPRY3	ENST00000302805	human	ensembl	74_37	+1	known	missense	c.539	p.S180N	1.000	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939				159	0	0	90	36	28.5714
PLCXD1	0	genome.wustl.edu	37	X	215873	215873	+	Silent	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	215873	215873	C	T	SNP	PLCXD1	ENST00000381657	human	ensembl	74_37	+1	known	silent	c.843	p.S281	0.005	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD1	HGNC	ENSG00000182378				75	0	0	25	25	50
USP9X	0	genome.wustl.edu	37	X	41027442	41027442	+	Silent	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	41027442	41027442	T	C	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	silent	c.2607	p.H869	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				40	0	0	11	18	62.069
RBM10	0	genome.wustl.edu	37	X	47044482	47044482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	47044482	47044482	G	A	SNP	RBM10	ENST00000377604	human	ensembl	74_37	+1	known	missense	c.1979	p.R660H	1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872				14	0	0	3	2	40
CFP	0	genome.wustl.edu	37	X	47485906	47485906	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	47485906	47485906	C	T	SNP	CFP	ENST00000247153	human	ensembl	74_37	-1	known	nonsense	c.953	p.W318*	0.998	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	CFP	HGNC	ENSG00000126759				42	0	0	13	12	48
DGKK	0	genome.wustl.edu	37	X	50146591	50146591	+	RNA	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	50146591	50146591	G	A	SNP	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466				51	0	0	16	20	55.5556
CXorf67	0	genome.wustl.edu	37	X	51150061	51150061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	51150061	51150061	G	A	SNP	CXorf67	ENST00000342995	human	ensembl	74_37	+1	known	missense	c.193	p.A65T	0.000	NULL	NULL	-	no_errors	CXorf67	HGNC	ENSG00000187690				21	0	0	11	9	45
FGD1	0	genome.wustl.edu	37	X	54473854	54473854	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	54473854	54473854	T	C	SNP	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	missense	c.2470	p.I824V	0.995	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302				18	0	0	7	6	46.1538
ITIH6	0	genome.wustl.edu	37	X	54776440	54776440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	54776440	54776440	C	T	SNP	ITIH6	ENST00000218436	human	ensembl	74_37	-1	known	missense	c.3830	p.R1277K	0.998	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH6	HGNC	ENSG00000102313				27	0	0	9	9	50
PAGE3	0	genome.wustl.edu	37	X	55287036	55287036	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	55287036	55287036	G	A	SNP	PAGE3	ENST00000374951	human	ensembl	74_37	-1	known	missense	c.250	p.R84C	0.002	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE3	HGNC	ENSG00000204279				25	0	0	15	4	21.0526
AWAT2	0	genome.wustl.edu	37	X	69261775	69261775	+	Silent	SNP	T	T	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	69261775	69261775	T	A	SNP	AWAT2	ENST00000276101	human	ensembl	74_37	-1	known	silent	c.885	p.P295	0.093	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT2	HGNC	ENSG00000147160				50	0	0	16	15	48.3871
P2RY4	0	genome.wustl.edu	37	X	69478728	69478728	+	Silent	SNP	C	C	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	69478728	69478728	C	A	SNP	P2RY4	ENST00000374519	human	ensembl	74_37	-1	known	silent	c.747	p.V249	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y4_rcpt,prints_GPCR_Rhodpsn,prints_P2Y2_rcpt	-	no_errors	P2RY4	HGNC	ENSG00000186912				24	0	0	5	6	54.5455
TAF1	0	genome.wustl.edu	37	X	70598812	70598812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	70598812	70598812	C	T	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.1288	p.R430C	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				110	0	0	33	57	63.3333
TAF1	0	genome.wustl.edu	37	X	70618466	70618466	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	70618466	70618466	G	A	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.3662	p.R1221Q	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				30	0	0	10	8	44.4444
PCDH11X	0	genome.wustl.edu	37	X	91873632	91873632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	91873632	91873632	G	A	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.3737	p.S1246N	0.653	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				94	0	0	57	4	6.55738
SHROOM2	0	genome.wustl.edu	37	X	9862480	9862480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	9862480	9862480	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	missense	c.532	p.V178I	0.932	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				43	0	0	12	18	60
TXLNG2P	0	genome.wustl.edu	37	Y	21764105	21764105	+	RNA	SNP	A	A	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	Y	21764105	21764105	A	T	SNP	TXLNG2P	ENST00000253320	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TXLNG2P	HGNC	ENSG00000131002				10	0	0	2	2	50
COL11A1	0	genome.wustl.edu	37	1	103474066	103474067	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	103474066	103474067	-	C	INS	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	frame_shift_ins	c.1672_1671	p.P557fs	1.000:0.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				102	0	0	85	21	19.8113
GPSM2	0	genome.wustl.edu	37	1	109466682	109466683	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	109466682	109466683	CA	-	DEL	GPSM2	ENST00000264126	human	ensembl	74_37	+1	known	frame_shift_del	c.1661_1662	p.Q555fs	0.985:0.492	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	pfam_GoLoco_motif,pfam_TPR_1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957				108	0	0	90	15	14.2857
SYCP1	0	genome.wustl.edu	37	1	115537601	115537601	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	115537601	115537601	A	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.2892	p.K967fs	1.000	NULL	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				49	0	0	18	10	35.7143
NOTCH2	0	genome.wustl.edu	37	1	120539849	120539850	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	120539849	120539850	-	A	INS	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	frame_shift_ins	c.522_521	p.T175fs	1.000:1.000	pirsf_Notch,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				155	0	0	133	23	14.7436
MXRA8	0	genome.wustl.edu	37	1	1290109	1290110	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	1290109	1290110	-	G	INS	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	frame_shift_ins	c.902_901	p.R301fs	0.000:0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				27	0	0	14	2	12.5
CCNL2	0	genome.wustl.edu	37	1	1322609	1322617	+	In_Frame_Del	DEL	CCTCACCTC	CCTCACCTC	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CCTCACCTC	CCTCACCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	1322609	1322617	CCTCACCTC	-	DEL	CCNL2	ENST00000400809	human	ensembl	74_37	-1	known	in_frame_del	c.1565_1557	p.R*520in_frame_del	0.677:0.988:1.000:1.000:1.000:1.000:1.000:0.862:0.789	pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978				189	0	0	104	9	7.9646
ENSG00000255168	0	genome.wustl.edu	37	1	145281380	145281381	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	145281380	145281381	-	A	INS	ENSG00000255168	ENST00000468030	human	ensembl	74_37	+1	known	frame_shift_ins	c.310_311	p.W105fs	0.921:0.889	pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	RP11-458D21.5	Clone_based_vega_gene	ENSG00000255168				778	0	0	688	39	5.36451
BCL9	0	genome.wustl.edu	37	1	147091500	147091501	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	147091500	147091501	-	C	INS	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	frame_shift_ins	c.1539_1540	p.P516fs	1.000:1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				147	0	0	123	23	15.7534
VPS45	0	genome.wustl.edu	37	1	150082564	150082564	+	RNA	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	150082564	150082564	T	-	DEL	VPS45	ENST00000484306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631				21	0	0	10	6	37.5
MEF2D	0	genome.wustl.edu	37	1	156449123	156449123	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	156449123	156449123	C	-	DEL	MEF2D	ENST00000348159	human	ensembl	74_37	-1	known	frame_shift_del	c.623	p.G208fs	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2D	HGNC	ENSG00000116604				47	0	0	20	6	23.0769
OR10Z1	0	genome.wustl.edu	37	1	158576757	158576757	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	158576757	158576757	T	-	DEL	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	frame_shift_del	c.529	p.C179fs	0.950	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				130	1	0.763359	93	20	17.6991
SLAMF1	0	genome.wustl.edu	37	1	160589601	160589601	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	160589601	160589601	T	-	DEL	SLAMF1	ENST00000302035	human	ensembl	74_37	-1	known	frame_shift_del	c.829	p.S277fs	0.881	NULL	pfam_Sig_lymph_act_molc_N,pfscan_Ig-like_dom	-	no_errors	SLAMF1	HGNC	ENSG00000117090				179	0	0	124	29	18.9542
SPEN	0	genome.wustl.edu	37	1	16258928	16258928	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	16258928	16258928	A	-	DEL	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	frame_shift_del	c.6193	p.K2066fs	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				57	0	0	49	12	19.6721
RABGAP1L	0	genome.wustl.edu	37	1	174671277	174671277	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	174671277	174671277	T	-	DEL	RABGAP1L	ENST00000251507	human	ensembl	74_37	+1	known	frame_shift_del	c.2052	p.S686fs	0.944	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1L	HGNC	ENSG00000152061				94	0	0	47	28	37.3333
PAPPA2	0	genome.wustl.edu	37	1	176563964	176563964	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	176563964	176563964	G	-	DEL	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	frame_shift_del	c.1224	p.G410fs	0.990	superfamily_ConA-like_lec_gl_sf,smart_LamG-like	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				185	0	0	140	18	11.3924
NPHS2	0	genome.wustl.edu	37	1	179528880	179528881	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	179528880	179528881	-	A	INS	NPHS2	ENST00000367615	human	ensembl	74_37	-1	known	frame_shift_ins	c.468_467	p.L156fs	0.999:1.000	pfam_Band_7,smart_Band_7	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	NPHS2	HGNC	ENSG00000116218				10	0	0	7	5	41.6667
SHCBP1L	0	genome.wustl.edu	37	1	182908370	182908370	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	182908370	182908370	T	-	DEL	SHCBP1L	ENST00000367547	human	ensembl	74_37	-1	known	frame_shift_del	c.1017	p.K339fs	0.996	NULL	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	-	no_errors	SHCBP1L	HGNC	ENSG00000157060				103	0	0	65	16	19.7531
TRMT1L	0	genome.wustl.edu	37	1	185109329	185109329	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	185109329	185109329	T	-	DEL	TRMT1L	ENST00000367506	human	ensembl	74_37	-1	known	frame_shift_del	c.885	p.K295fs	0.999	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	TRMT1L	HGNC	ENSG00000121486				45	0	0	28	10	26.3158
HMCN1	0	genome.wustl.edu	37	1	185897784	185897784	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	185897784	185897784	T	-	DEL	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	frame_shift_del	c.1537	p.F514fs	0.999	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				177	0	0	131	41	23.8372
UBR4	0	genome.wustl.edu	37	1	19449428	19449429	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	19449428	19449429	-	A	INS	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	frame_shift_ins	c.9715_9714	p.G3238fs	0.995:0.740	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				122	0	0	94	26	21.6667
ZBTB41	0	genome.wustl.edu	37	1	197168526	197168526	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	197168526	197168526	T	-	DEL	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	frame_shift_del	c.1078	p.I360fs	0.941	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888				63	0	0	48	20	29.4118
KIF14	0	genome.wustl.edu	37	1	200561296	200561296	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	200561296	200561296	T	-	DEL	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	frame_shift_del	c.2725	p.R909fs	0.011	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				76	0	0	37	10	21.2766
CAMSAP2	0	genome.wustl.edu	37	1	200827020	200827020	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	200827020	200827020	A	-	DEL	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	frame_shift_del	c.4303	p.M1437fs	1.000	pfam_CKK_domain,superfamily_PRC_barrel-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				78	0	0	33	13	28.2609
PLEKHA6	0	genome.wustl.edu	37	1	204228411	204228411	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	204228411	204228411	C	-	DEL	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	frame_shift_del	c.982	p.V328fs	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				70	0	0	39	13	25
TRAF3IP3	0	genome.wustl.edu	37	1	209933542	209933543	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	209933542	209933543	AG	-	DEL	TRAF3IP3	ENST00000367024	human	ensembl	74_37	+1	known	frame_shift_del	c.158_159	p.E55fs	0.231:0.000	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790				77	0	0	34	11	24.4444
EPHA8	0	genome.wustl.edu	37	1	22915491	22915491	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	22915491	22915491	C	-	DEL	EPHA8	ENST00000166244	human	ensembl	74_37	+1	known	frame_shift_del	c.1107	p.W371fs	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886				14	0	0	9	2	18.1818
TARBP1	0	genome.wustl.edu	37	1	234614801	234614801	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	234614801	234614801	G	-	DEL	TARBP1	ENST00000040877	human	ensembl	74_37	-1	novel	frame_shift_del	c.49	p.R17fs	0.000	NULL	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588				27	0	0	16	3	15.7895
ARID4B	0	genome.wustl.edu	37	1	235345233	235345233	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	235345233	235345233	T	-	DEL	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	frame_shift_del	c.3001	p.T1001fs	0.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				177	0	0	133	17	11.3333
GPR137B	0	genome.wustl.edu	37	1	236306034	236306034	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	236306034	236306034	C	-	DEL	GPR137B	ENST00000366592	human	ensembl	74_37	+1	known	frame_shift_del	c.112	p.Y40fs	1.000	NULL	NULL	-	no_errors	GPR137B	HGNC	ENSG00000077585				34	0	0	8	5	38.4615
GPR137B	0	genome.wustl.edu	37	1	236306298	236306298	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	236306298	236306298	T	-	DEL	GPR137B	ENST00000366592	human	ensembl	74_37	+1	known	frame_shift_del	c.376	p.F127fs	1.000	NULL	NULL	-	no_errors	GPR137B	HGNC	ENSG00000077585				175	0	0	113	22	16.2963
MAN1C1	0	genome.wustl.edu	37	1	25944452	25944452	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	25944452	25944452	C	-	DEL	MAN1C1	ENST00000374332	human	ensembl	74_37	+1	known	frame_shift_del	c.164	p.R57fs	0.925	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1C1	HGNC	ENSG00000117643				146	0	0	88	8	8.33333
ARID1A	0	genome.wustl.edu	37	1	27105931	27105931	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	27105931	27105931	G	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.5542	p.D1850fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				219	0	0	141	32	18.4971
WDTC1	0	genome.wustl.edu	37	1	27621108	27621108	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	27621108	27621108	G	-	DEL	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	frame_shift_del	c.861	p.E290fs	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				65	0	0	37	16	30.1887
STX12	0	genome.wustl.edu	37	1	28099854	28099854	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	28099854	28099854	G	-	DEL	STX12	ENST00000373943	human	ensembl	74_37	+1	known	frame_shift_del	c.36	p.S15fs	1.000	smart_Syntaxin_N	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX12	HGNC	ENSG00000117758				22	0	0	11	6	35.2941
ZMYM4	0	genome.wustl.edu	37	1	35824656	35824656	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	35824656	35824656	T	-	DEL	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	frame_shift_del	c.216	p.L74fs	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				111	0	0	57	17	22.973
MAP7D1	0	genome.wustl.edu	37	1	36636626	36636626	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	36636626	36636626	C	-	DEL	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	frame_shift_del	c.101	p.P36fs	0.090	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				160	0	0	109	27	19.8529
KIAA0754	0	genome.wustl.edu	37	1	39877724	39877724	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	39877724	39877724	A	-	DEL	KIAA0754	ENST00000530275	human	ensembl	74_37	+1	known	frame_shift_del	c.1379	p.K461fs	0.000	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103				99	0	0	51	15	22.7273
TIE1	0	genome.wustl.edu	37	1	43766758	43766758	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	43766758	43766758	C	-	DEL	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	frame_shift_del	c.16	p.P7fs	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056				85	0	0	67	10	12.987
RNF220	0	genome.wustl.edu	37	1	44878287	44878287	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	44878287	44878287	C	-	DEL	RNF220	ENST00000355387	human	ensembl	74_37	+1	known	frame_shift_del	c.518	p.G175fs	1.000	NULL	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147				90	0	0	66	23	25.8427
BEND5	0	genome.wustl.edu	37	1	49201967	49201967	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	49201967	49201967	T	-	DEL	BEND5	ENST00000371833	human	ensembl	74_37	-1	known	frame_shift_del	c.1052	p.K351fs	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND5	HGNC	ENSG00000162373				106	0	0	59	22	27.1605
CC2D1B	0	genome.wustl.edu	37	1	52827212	52827213	+	In_Frame_Ins	INS	-	-	TCC			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	52827212	52827213	-	TCC	INS	CC2D1B	ENST00000371586	human	ensembl	74_37	-1	known	in_frame_ins	c.291_290	p.98in_frame_insE	0.997:0.999	NULL	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1B	HGNC	ENSG00000154222				67	0	0	54	7	11.4754
C1orf141	0	genome.wustl.edu	37	1	67561987	67561988	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	67561987	67561988	-	T	INS	C1orf141	ENST00000371006	human	ensembl	74_37	-1	known	frame_shift_ins	c.364_363	p.P121fs	0.000:0.000	NULL	NULL	-	no_errors	C1orf141	HGNC	ENSG00000203963				13	0	0	18	7	28
CAMTA1	0	genome.wustl.edu	37	1	6885239	6885240	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	6885239	6885240	-	A	INS	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	frame_shift_ins	c.203_204	p.E70fs	1.000:0.977	pfam_CG-1_dom	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				76	0	0	37	6	13.9535
ST6GALNAC5	0	genome.wustl.edu	37	1	77510209	77510209	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	77510209	77510209	G	-	DEL	ST6GALNAC5	ENST00000477717	human	ensembl	74_37	+1	known	frame_shift_del	c.582	p.V195fs	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GALNAC5	HGNC	ENSG00000117069				274	0	0	141	33	18.9655
CDC7	0	genome.wustl.edu	37	1	91967357	91967357	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	91967357	91967357	A	-	DEL	CDC7	ENST00000234626	human	ensembl	74_37	+1	known	frame_shift_del	c.84	p.N31fs	0.083	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDC7	HGNC	ENSG00000097046				94	0	0	63	14	18.1818
LOC101930643	0	genome.wustl.edu	37	1	93730225	93730225	+	RNA	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	93730225	93730225	T	-	DEL	LOC101930643	ENST00000415150	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP4-717I23.3	Clone_based_vega_gene	ENSG00000223745				52	0	0	17	10	37.037
FNBP1L	0	genome.wustl.edu	37	1	94016650	94016650	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	94016650	94016650	A	-	DEL	FNBP1L	ENST00000271234	human	ensembl	74_37	+1	known	frame_shift_del	c.1798	p.N601fs	1.000	NULL	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	FNBP1L	HGNC	ENSG00000137942				22	0	0	20	2	9.09091
DPYD	0	genome.wustl.edu	37	1	97771791	97771791	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	1	97771791	97771791	A	-	DEL	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	frame_shift_del	c.2121	p.F707fs	1.000	pfam_Dihydroorotate_DH_1_2,pfam_tRNA_hU_synthase,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				159	1	0.625	130	43	24.8555
PDZD7	0	genome.wustl.edu	37	10	102789810	102789811	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	102789810	102789811	-	G	INS	PDZD7	ENST00000370215	human	ensembl	74_37	-1	known	frame_shift_ins	c.167_166	p.R56fs	0.996:0.998	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD7	HGNC	ENSG00000186862				194	1	0.512821	123	25	16.8919
KCNIP2	0	genome.wustl.edu	37	10	103587076	103587076	+	RNA	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	103587076	103587076	C	-	DEL	KCNIP2	ENST00000355657	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	KCNIP2	HGNC	ENSG00000120049				260	0	0	152	24	13.6364
NOLC1	0	genome.wustl.edu	37	10	103920580	103920582	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	103920580	103920582	AAG	-	DEL	NOLC1	ENST00000405356	human	ensembl	74_37	+1	known	in_frame_del	c.1501_1503	p.K503in_frame_del	0.070:0.075:0.056	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197				64	0	0	36	11	23.4043
WBP1L	0	genome.wustl.edu	37	10	104572835	104572835	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	104572835	104572835	G	-	DEL	WBP1L	ENST00000448841	human	ensembl	74_37	+1	known	frame_shift_del	c.839	p.G281fs	1.000	NULL	pfam_Uncharacterised_WW-bd	-	no_errors	WBP1L	HGNC	ENSG00000166272				128	0	0	87	5	5.43478
KIAA1598	0	genome.wustl.edu	37	10	118719757	118719757	+	RNA	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	118719757	118719757	A	-	DEL	KIAA1598	ENST00000490615	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIAA1598	HGNC	ENSG00000187164				33	0	0	16	9	36
OPTN	0	genome.wustl.edu	37	10	13151192	13151192	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	13151192	13151192	C	-	DEL	OPTN	ENST00000263036	human	ensembl	74_37	+1	known	frame_shift_del	c.70	p.H26fs	1.000	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240				163	0	0	93	29	23.7705
LRRC27	0	genome.wustl.edu	37	10	134188696	134188696	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	134188696	134188696	T	-	DEL	LRRC27	ENST00000368613	human	ensembl	74_37	+1	known	frame_shift_del	c.1543	p.F516fs	0.960	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC27	HGNC	ENSG00000148814				66	0	0	28	12	30
TTC40	0	genome.wustl.edu	37	10	134628225	134628225	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	134628225	134628225	G	-	DEL	TTC40	ENST00000263170	human	ensembl	74_37	-1	known	frame_shift_del	c.1697	p.P566fs	0.001	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811				14	0	0	9	3	25
GPR123	0	genome.wustl.edu	37	10	134942202	134942202	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	134942202	134942202	G	-	DEL	GPR123	ENST00000607359	human	ensembl	74_37	+1	putative	frame_shift_del	c.3027	p.Y1010fs	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177				57	0	0	23	7	23.3333
PFKP	0	genome.wustl.edu	37	10	3172106	3172106	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	3172106	3172106	G	-	DEL	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	frame_shift_del	c.1779	p.L596fs	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				102	0	0	55	9	14.0625
TFAM	0	genome.wustl.edu	37	10	60148570	60148572	+	In_Frame_Del	DEL	AAA	AAA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	60148570	60148572	AAA	-	DEL	TFAM	ENST00000487519	human	ensembl	74_37	+1	known	in_frame_del	c.432_434	p.K147in_frame_del	0.006:0.936:0.964	superfamily_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TFAM	HGNC	ENSG00000108064				83	0	0	29	3	9.375
ARID5B	0	genome.wustl.edu	37	10	63852118	63852118	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	63852118	63852118	A	-	DEL	ARID5B	ENST00000279873	human	ensembl	74_37	+1	known	frame_shift_del	c.2896	p.K967fs	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347				117	0	0	71	19	21.1111
HKDC1	0	genome.wustl.edu	37	10	71018587	71018587	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	71018587	71018587	G	-	DEL	HKDC1	ENST00000354624	human	ensembl	74_37	+1	known	frame_shift_del	c.2088	p.G698fs	0.982	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510				121	0	0	99	17	14.6552
DNAJC9	0	genome.wustl.edu	37	10	75005812	75005813	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	75005812	75005813	CA	-	DEL	DNAJC9	ENST00000372950	human	ensembl	74_37	-1	known	frame_shift_del	c.444_443	p.V148fs	0.998:1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC9	HGNC	ENSG00000213551				147	0	0	100	13	11.5044
NRG3	0	genome.wustl.edu	37	10	83635238	83635238	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	83635238	83635238	C	-	DEL	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	frame_shift_del	c.142	p.R50fs	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737				8	0	0	4	3	42.8571
PANK1	0	genome.wustl.edu	37	10	91359120	91359120	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	91359120	91359120	T	-	DEL	PANK1	ENST00000307534	human	ensembl	74_37	-1	known	frame_shift_del	c.1199	p.K400fs	1.000	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK1	HGNC	ENSG00000152782				261	1	0.381679	180	49	21.3974
KIF20B	0	genome.wustl.edu	37	10	91514406	91514406	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	91514406	91514406	T	-	DEL	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	frame_shift_del	c.4569	p.F1525fs	0.322	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				76	0	0	58	14	19.4444
NOC3L	0	genome.wustl.edu	37	10	96117098	96117098	+	RNA	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	96117098	96117098	A	-	DEL	NOC3L	ENST00000463649	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NOC3L	HGNC	ENSG00000173145				29	0	0	8	4	33.3333
TM9SF3	0	genome.wustl.edu	37	10	98292921	98292921	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	10	98292921	98292921	A	-	DEL	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	frame_shift_del	c.1212	p.F404fs	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				32	0	0	18	8	30.7692
GRIA4	0	genome.wustl.edu	37	11	105623740	105623740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	105623740	105623740	T	-	DEL	GRIA4	ENST00000282499	human	ensembl	74_37	+1	known	frame_shift_del	c.281	p.F95fs	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578				88	0	0	71	21	22.8261
MUC2	0	genome.wustl.edu	37	11	1078269	1078269	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	1078269	1078269	G	-	DEL	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	frame_shift_del	c.556	p.V186fs	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				78	0	0	45	9	16.6667
CTR9	0	genome.wustl.edu	37	11	10794128	10794130	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	10794128	10794130	GAA	-	DEL	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	in_frame_del	c.2506_2508	p.E838in_frame_del	1.000:1.000:0.999	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				64	0	0	26	9	25.7143
CEP164	0	genome.wustl.edu	37	11	117222648	117222648	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	117222648	117222648	A	-	DEL	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	frame_shift_del	c.337	p.K116fs	1.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				16	0	0	5	5	50
BCL9L	0	genome.wustl.edu	37	11	118770651	118770652	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	118770651	118770652	-	G	INS	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	frame_shift_ins	c.3381_3380	p.P1128fs	0.988:0.996	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				74	0	0	35	11	23.913
DPAGT1	0	genome.wustl.edu	37	11	118969142	118969143	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	118969142	118969143	-	A	INS	DPAGT1	ENST00000354202	human	ensembl	74_37	-1	known	frame_shift_ins	c.699_698	p.T234fs	1.000:1.000	pfam_Glycosyl_transferase_4	pfam_Glycosyl_transferase_4	-	no_errors	DPAGT1	HGNC	ENSG00000172269				145	0	0	106	10	8.62069
MFRP	0	genome.wustl.edu	37	11	119213688	119213688	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	119213688	119213688	G	-	DEL	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	frame_shift_del	c.1150	p.H384fs	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				26	0	0	11	2	15.3846
MUC5AC	0	genome.wustl.edu	37	11	1217129	1217129	+	RNA	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	1217129	1217129	C	-	DEL	MUC5AC	ENST00000358378	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.033	-	-	-	no_errors	MUC5AC	HGNC	ENSG00000215182				104	0	0	69	17	19.7674
DCDC1	0	genome.wustl.edu	37	11	31349818	31349818	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	31349818	31349818	T	-	DEL	DCDC1	ENST00000452803	human	ensembl	74_37	-1	known	frame_shift_del	c.10	p.T4fs	0.005	NULL	pfscan_Doublecortin_dom	-	no_errors	DCDC1	HGNC	ENSG00000170959				72	0	0	80	22	21.5686
QSER1	0	genome.wustl.edu	37	11	32997895	32997895	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	32997895	32997895	A	-	DEL	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	frame_shift_del	c.5083	p.N1697fs	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				37	0	0	33	6	15.3846
CSTF3	0	genome.wustl.edu	37	11	33117910	33117910	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	33117910	33117910	T	-	DEL	CSTF3	ENST00000323959	human	ensembl	74_37	-1	known	frame_shift_del	c.1317	p.K439fs	1.000	pfam_Suf,smart_HAT	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102				112	0	0	77	20	20.6186
ALX4	0	genome.wustl.edu	37	11	44286624	44286624	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	44286624	44286624	G	-	DEL	ALX4	ENST00000329255	human	ensembl	74_37	-1	known	frame_shift_del	c.1016	p.P339fs	0.977	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX4	HGNC	ENSG00000052850				51	0	0	21	6	22.2222
LRP4	0	genome.wustl.edu	37	11	46880747	46880748	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	46880747	46880748	-	C	INS	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	frame_shift_ins	c.5505_5504	p.L1836fs	1.000:1.000	NULL	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569				106	0	0	73	19	20.6522
OR52A5	0	genome.wustl.edu	37	11	5153679	5153679	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	5153679	5153679	A	-	DEL	OR52A5	ENST00000307388	human	ensembl	74_37	-1	known	frame_shift_del	c.194	p.L65fs	0.870	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944				69	0	0	66	7	9.58904
OR4P4	0	genome.wustl.edu	37	11	55406141	55406142	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	55406141	55406142	-	T	INS	OR4P4	ENST00000314612	human	ensembl	74_37	+1	known	frame_shift_ins	c.308_309	p.G106fs	0.416:0.097	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4P4	HGNC	ENSG00000181927				148	0	0	96	20	17.2414
OR5M3	0	genome.wustl.edu	37	11	56237709	56237709	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	56237709	56237709	T	-	DEL	OR5M3	ENST00000312240	human	ensembl	74_37	-1	known	frame_shift_del	c.265	p.T89fs	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M3	HGNC	ENSG00000174937				77	0	0	51	14	21.5385
TNKS1BP1	0	genome.wustl.edu	37	11	57077118	57077119	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	57077118	57077119	CT	-	DEL	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	frame_shift_del	c.3067_3066	p.G1023fs	0.000:0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				127	0	0	73	4	5.19481
SERPING1	0	genome.wustl.edu	37	11	57365774	57365776	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	57365774	57365776	CTG	-	DEL	SERPING1	ENST00000278407	human	ensembl	74_37	+1	known	in_frame_del	c.31_33	p.L14in_frame_del	1.000:1.000:1.000	NULL	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPING1	HGNC	ENSG00000149131				20	0	0	9	3	25
CTNND1	0	genome.wustl.edu	37	11	57578949	57578950	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	57578949	57578950	-	A	INS	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	frame_shift_ins	c.2629_2630	p.S879fs	1.000:1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561				221	0	0	158	42	21
OR52E8	0	genome.wustl.edu	37	11	5878010	5878011	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	5878010	5878011	-	CT	INS	OR52E8	ENST00000537935	human	ensembl	74_37	-1	known	frame_shift_ins	c.923_922	p.V308fs	0.018:0.011	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E8	HGNC	ENSG00000183269				198	0	0	167	44	20.8531
OR52E8	0	genome.wustl.edu	37	11	5878221	5878222	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	5878221	5878222	-	T	INS	OR52E8	ENST00000537935	human	ensembl	74_37	-1	known	frame_shift_ins	c.712_711	p.A237fs	0.003:0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E8	HGNC	ENSG00000183269				56	0	0	47	9	16.0714
OSBP	0	genome.wustl.edu	37	11	59369267	59369267	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	59369267	59369267	T	-	DEL	OSBP	ENST00000263847	human	ensembl	74_37	-1	known	frame_shift_del	c.867	p.K289fs	0.596	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP	HGNC	ENSG00000110048				77	0	0	63	16	20.2532
CD6	0	genome.wustl.edu	37	11	60777126	60777127	+	Frame_Shift_Ins	INS	-	-	GT			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	60777126	60777127	-	GT	INS	CD6	ENST00000313421	human	ensembl	74_37	+1	known	frame_shift_ins	c.864_865	p.D290fs	0.293:0.999	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD6	HGNC	ENSG00000013725				97	0	0	59	17	22.3684
DCHS1	0	genome.wustl.edu	37	11	6662142	6662142	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	6662142	6662142	G	-	DEL	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	frame_shift_del	c.703	p.R235fs	0.606	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				205	0	0	135	15	10
SHANK2	0	genome.wustl.edu	37	11	70331662	70331662	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	70331662	70331662	G	-	DEL	SHANK2	ENST00000338508	human	ensembl	74_37	-1	known	frame_shift_del	c.4739	p.P1580fs	0.995	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105				198	0	0	130	48	26.9663
INPPL1	0	genome.wustl.edu	37	11	71948209	71948209	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	71948209	71948209	C	-	DEL	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	frame_shift_del	c.2921	p.P976fs	0.066	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				181	0	0	107	27	20.1493
GAB2	0	genome.wustl.edu	37	11	77937650	77937650	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	77937650	77937650	G	-	DEL	GAB2	ENST00000361507	human	ensembl	74_37	-1	known	frame_shift_del	c.1068	p.K357fs	0.999	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327				199	1	0.5	137	42	23.4637
SLC25A22	0	genome.wustl.edu	37	11	791923	791923	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	791923	791923	G	-	DEL	SLC25A22	ENST00000320230	human	ensembl	74_37	-1	known	frame_shift_del	c.964	p.Q322fs	0.456	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A22	HGNC	ENSG00000177542				33	0	0	12	6	33.3333
SCARNA9	0	genome.wustl.edu	37	11	93454921	93454921	+	RNA	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	11	93454921	93454921	G	-	DEL	SCARNA9	ENST00000530422	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	SCARNA9	HGNC	ENSG00000254911				20	0	0	10	4	28.5714
SYCP3	0	genome.wustl.edu	37	12	102122901	102122901	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	102122901	102122901	T	-	DEL	SYCP3	ENST00000266743	human	ensembl	74_37	-1	known	frame_shift_del	c.643	p.I215fs	0.988	NULL	pfam_Cor1/Xlr/Xmr	-	no_errors	SYCP3	HGNC	ENSG00000139351				38	0	0	7	6	46.1538
SDS	0	genome.wustl.edu	37	12	113835064	113835064	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	113835064	113835064	C	-	DEL	SDS	ENST00000257549	human	ensembl	74_37	-1	known	frame_shift_del	c.559	p.D187fs	1.000	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SDS	HGNC	ENSG00000135094				73	0	0	50	11	18.0328
MSI1	0	genome.wustl.edu	37	12	120800903	120800903	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	120800903	120800903	C	-	DEL	MSI1	ENST00000257552	human	ensembl	74_37	-1	known	frame_shift_del	c.345	p.L116fs	0.538	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI1	HGNC	ENSG00000135097				285	0	0	188	38	16.8142
HNF1A	0	genome.wustl.edu	37	12	121416638	121416639	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	121416638	121416639	AA	-	DEL	HNF1A	ENST00000257555	human	ensembl	74_37	+1	known	frame_shift_del	c.67_68	p.K23fs	1.000:1.000	pfam_HNF-1_N,superfamily_HNF1_dimer_dom	pfam_HNF1b_C,pfam_HNF-1_N,pfam_HNF1a_C,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1A	HGNC	ENSG00000135100				54	0	0	23	4	14.8148
CLIP1	0	genome.wustl.edu	37	12	122773037	122773037	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	122773037	122773037	T	-	DEL	CLIP1	ENST00000540338	human	ensembl	74_37	-1	known	frame_shift_del	c.3646	p.R1216fs	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779				50	0	0	20	7	25.9259
NCOR2	0	genome.wustl.edu	37	12	124846815	124846816	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	124846815	124846816	-	G	INS	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	frame_shift_ins	c.2954_2953	p.R985fs	0.999:0.990	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				26	0	0	21	6	22.2222
PLCZ1	0	genome.wustl.edu	37	12	18849130	18849131	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	18849130	18849131	AG	-	DEL	PLCZ1	ENST00000266505	human	ensembl	74_37	-1	known	frame_shift_del	c.1245_1244	p.S415fs	1.000:1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151				20	0	0	14	4	22.2222
OVCH1	0	genome.wustl.edu	37	12	29624856	29624856	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	29624856	29624856	C	-	DEL	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	frame_shift_del	c.1735	p.E579fs	0.879	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				39	0	0	27	8	22.8571
ALG10	0	genome.wustl.edu	37	12	34179403	34179404	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	34179403	34179404	-	T	INS	ALG10	ENST00000266483	human	ensembl	74_37	+1	known	frame_shift_ins	c.975_976	p.V327fs	0.003:0.069	pfam_Alg10,pirsf_Alg10	pfam_Alg10,pirsf_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133				98	0	0	36	16	30.7692
KIF21A	0	genome.wustl.edu	37	12	39735366	39735368	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	39735366	39735368	TCC	-	DEL	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	in_frame_del	c.1862_1860	p.E621in_frame_del	0.995:0.995:0.021	superfamily_ARM-type_fold	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				39	0	0	29	4	12.1212
ENSG00000257913	0	genome.wustl.edu	37	12	49412461	49412461	+	RNA	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	49412461	49412461	G	-	DEL	ENSG00000257913	ENST00000547395	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.377	-	-	-	no_errors	RP11-386G11.5	Clone_based_vega_gene	ENSG00000257913				135	1	0.735294	74	19	20.4301
CBX5	0	genome.wustl.edu	37	12	54645832	54645832	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	54645832	54645832	T	-	DEL	CBX5	ENST00000209875	human	ensembl	74_37	-1	known	frame_shift_del	c.317	p.K106fs	1.000	superfamily_Chromodomain-like	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX5	HGNC	ENSG00000094916				208	2	0.952381	85	70	45.1613
NTF3	0	genome.wustl.edu	37	12	5603709	5603709	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	5603709	5603709	C	-	DEL	NTF3	ENST00000423158	human	ensembl	74_37	+1	known	frame_shift_del	c.368	p.L125fs	1.000	pirsf_Nerve_growth_factor-like	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pirsf_Nerve_growth_factor-like,pfscan_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Neurotrophin-3	-	no_errors	NTF3	HGNC	ENSG00000185652				111	0	0	64	23	26.4368
STAT2	0	genome.wustl.edu	37	12	56742816	56742817	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	56742816	56742817	-	G	INS	STAT2	ENST00000314128	human	ensembl	74_37	-1	known	frame_shift_ins	c.1468_1467	p.K489fs	0.000:0.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581				114	0	0	54	13	19.403
LRP1	0	genome.wustl.edu	37	12	57572241	57572242	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	57572241	57572242	-	G	INS	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	frame_shift_ins	c.4461_4462	p.E1489fs	0.705:1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				157	0	0	89	17	16.0377
GLI1	0	genome.wustl.edu	37	12	57860075	57860075	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	57860075	57860075	G	-	DEL	GLI1	ENST00000228682	human	ensembl	74_37	+1	known	frame_shift_del	c.815	p.G274fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087				252	2	0.787402	147	45	23.4375
DPY19L2	0	genome.wustl.edu	37	12	64055262	64055263	+	Splice_Site	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	64055262	64055263	-	T	INS	DPY19L2	ENST00000324472	human	ensembl	74_37	-1	known	splice_site_ins	c.451-2_451-1	e4-1	1.000:0.999	-	-	-	no_errors	DPY19L2	HGNC	ENSG00000177990				61	0	0	28	7	20
E2F7	0	genome.wustl.edu	37	12	77449827	77449827	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	77449827	77449827	T	-	DEL	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	frame_shift_del	c.177	p.K59fs	0.976	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				109	1	0.909091	60	22	26.8293
KITLG	0	genome.wustl.edu	37	12	88910256	88910256	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	88910256	88910256	T	-	DEL	KITLG	ENST00000228280	human	ensembl	74_37	-1	known	frame_shift_del	c.375	p.K125fs	0.120	pfam_SCF,superfamily_4_helix_cytokine-like_core,pirsf_SCF	pfam_SCF,superfamily_4_helix_cytokine-like_core,pirsf_SCF	-	no_errors	KITLG	HGNC	ENSG00000049130				20	0	0	12	4	25
NDUFA12	0	genome.wustl.edu	37	12	95396516	95396516	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	95396516	95396516	A	-	DEL	NDUFA12	ENST00000327772	human	ensembl	74_37	-1	known	frame_shift_del	c.168	p.F56fs	1.000	NULL	NULL	-	no_errors	NDUFA12	HGNC	ENSG00000184752				72	0	0	60	5	7.69231
USP44	0	genome.wustl.edu	37	12	95927797	95927798	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	12	95927797	95927798	-	A	INS	USP44	ENST00000258499	human	ensembl	74_37	-1	known	frame_shift_ins	c.236_235	p.C79fs	1.000:1.000	pfam_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP44	HGNC	ENSG00000136014				50	0	0	26	10	27.7778
COL4A1	0	genome.wustl.edu	37	13	110864792	110864792	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	110864792	110864792	G	-	DEL	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	frame_shift_del	c.359	p.P120fs	0.998	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				340	0	0	212	39	15.5378
RNF17	0	genome.wustl.edu	37	13	25363909	25363912	+	Frame_Shift_Del	DEL	AAGT	AAGT	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	25363909	25363912	AAGT	-	DEL	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	frame_shift_del	c.934_935	p.K312fs	0.920:0.974	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972				158	0	0	102	14	12.069
CENPJ	0	genome.wustl.edu	37	13	25463471	25463471	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	25463471	25463471	T	-	DEL	CENPJ	ENST00000381884	human	ensembl	74_37	-1	known	frame_shift_del	c.3284	p.N1095fs	0.285	NULL	pfam_Tcp10_C_dom	-	no_errors	CENPJ	HGNC	ENSG00000151849				157	0	0	69	30	30.303
GSX1	0	genome.wustl.edu	37	13	28367977	28367978	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	28367977	28367978	-	A	INS	GSX1	ENST00000302945	human	ensembl	74_37	+1	known	frame_shift_ins	c.687_688	p.C230fs	1.000:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GSX1	HGNC	ENSG00000169840				48	0	0	16	3	15.7895
HSPH1	0	genome.wustl.edu	37	13	31715382	31715382	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	31715382	31715382	T	-	DEL	HSPH1	ENST00000445273	human	ensembl	74_37	-1	known	frame_shift_del	c.1737	p.V580fs	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694				81	0	0	40	12	23.0769
POSTN	0	genome.wustl.edu	37	13	38171342	38171342	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	38171342	38171342	T	-	DEL	POSTN	ENST00000379747	human	ensembl	74_37	-1	known	frame_shift_del	c.197	p.K66fs	1.000	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110				55	0	0	27	7	20.5882
WBP4	0	genome.wustl.edu	37	13	41645702	41645703	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	41645702	41645703	-	A	INS	WBP4	ENST00000379487	human	ensembl	74_37	+1	known	frame_shift_ins	c.479_480	p.T163fs	0.938:0.941	superfamily_WW_dom,pfscan_WW_dom	pfam_WW_dom,pfam_Znf_U1-C,superfamily_WW_dom,smart_Znf_U1,smart_WW_dom,pfscan_WW_dom,pfscan_Znf_C2H2_matrin	-	no_errors	WBP4	HGNC	ENSG00000120688				104	0	0	73	11	13.0952
ZC3H13	0	genome.wustl.edu	37	13	46577381	46577381	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	46577381	46577381	T	-	DEL	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	frame_shift_del	c.837	p.K279fs	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				80	0	0	38	15	28.3019
RNASEH2B	0	genome.wustl.edu	37	13	51519632	51519632	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	51519632	51519632	T	-	DEL	RNASEH2B	ENST00000336617	human	ensembl	74_37	+1	known	frame_shift_del	c.580	p.F195fs	0.998	pfam_RNase_H2_suB	pfam_RNase_H2_suB	-	no_errors	RNASEH2B	HGNC	ENSG00000136104				135	0	0	88	18	16.9811
FBXL3	0	genome.wustl.edu	37	13	77581683	77581683	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	13	77581683	77581683	A	-	DEL	FBXL3	ENST00000355619	human	ensembl	74_37	-1	known	frame_shift_del	c.884	p.L295fs	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom	-	no_errors	FBXL3	HGNC	ENSG00000005812				47	0	0	35	10	22.2222
C14orf79	0	genome.wustl.edu	37	14	105452904	105452906	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	105452904	105452906	CTC	-	DEL	C14orf79	ENST00000547315	human	ensembl	74_37	+1	known	in_frame_del	c.136_138	p.L47in_frame_del	0.001:0.000:0.000	NULL	NULL	-	no_errors	C14orf79	HGNC	ENSG00000140104				158	0	0	104	20	16.129
CDH24	0	genome.wustl.edu	37	14	23517513	23517514	+	In_Frame_Ins	INS	-	-	GGG			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	23517513	23517514	-	GGG	INS	CDH24	ENST00000267383	human	ensembl	74_37	-1	known	in_frame_ins	c.2136_2135	p.713in_frame_insP	0.000:0.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880				84	0	0	42	10	19.2308
STRN3	0	genome.wustl.edu	37	14	31376175	31376175	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	31376175	31376175	T	-	DEL	STRN3	ENST00000357479	human	ensembl	74_37	-1	known	frame_shift_del	c.1796	p.N599fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN3	HGNC	ENSG00000196792				106	0	0	93	15	13.8889
ARHGAP5	0	genome.wustl.edu	37	14	32562545	32562545	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	32562545	32562545	T	-	DEL	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	frame_shift_del	c.2670	p.F892fs	0.999	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				56	0	0	23	6	20.6897
CTAGE5	0	genome.wustl.edu	37	14	39819358	39819358	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	39819358	39819358	T	-	DEL	CTAGE5	ENST00000396158	human	ensembl	74_37	+1	known	frame_shift_del	c.2320	p.F775fs	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527				169	0	0	119	39	24.6835
DDHD1	0	genome.wustl.edu	37	14	53619422	53619422	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	53619422	53619422	C	-	DEL	DDHD1	ENST00000323669	human	ensembl	74_37	-1	known	frame_shift_del	c.395	p.G132fs	0.957	NULL	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523				24	0	0	9	3	25
ZFP36L1	0	genome.wustl.edu	37	14	69256947	69256947	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	69256947	69256947	C	-	DEL	ZFP36L1	ENST00000336440	human	ensembl	74_37	-1	known	frame_shift_del	c.320	p.G107fs	1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650				122	0	0	66	18	21.4286
ADAM21P1	0	genome.wustl.edu	37	14	70713476	70713476	+	RNA	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	70713476	70713476	T	-	DEL	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812				157	0	0	82	19	18.8119
ADAM21	0	genome.wustl.edu	37	14	70926261	70926261	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	70926261	70926261	T	-	DEL	ADAM21	ENST00000267499	human	ensembl	74_37	+1	known	frame_shift_del	c.2045	p.L684fs	0.000	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985				35	0	0	24	7	22.5806
YLPM1	0	genome.wustl.edu	37	14	75265533	75265533	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	75265533	75265533	A	-	DEL	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	frame_shift_del	c.3533	p.M1180fs	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				76	0	0	54	9	14.2857
SPATA7	0	genome.wustl.edu	37	14	88894005	88894005	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	88894005	88894005	A	-	DEL	SPATA7	ENST00000393545	human	ensembl	74_37	+1	known	frame_shift_del	c.877	p.N294fs	0.001	NULL	NULL	-	no_errors	SPATA7	HGNC	ENSG00000042317				43	0	0	34	6	15
FOXN3	0	genome.wustl.edu	37	14	89878534	89878534	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	89878534	89878534	G	-	DEL	FOXN3	ENST00000261302	human	ensembl	74_37	-1	known	frame_shift_del	c.287	p.P96fs	0.998	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254				87	0	0	41	33	44.5946
NRDE2	0	genome.wustl.edu	37	14	90783061	90783061	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	90783061	90783061	T	-	DEL	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	frame_shift_del	c.268	p.R90fs	0.997	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				81	0	0	39	6	13.3333
UNC79	0	genome.wustl.edu	37	14	94088050	94088050	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	94088050	94088050	A	-	DEL	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	frame_shift_del	c.4537	p.K1515fs	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				57	0	0	35	13	27.0833
CLMN	0	genome.wustl.edu	37	14	95662949	95662949	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	95662949	95662949	T	-	DEL	CLMN	ENST00000298912	human	ensembl	74_37	-1	known	frame_shift_del	c.2594	p.K865fs	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959				44	0	0	24	4	14.2857
ATG2B	0	genome.wustl.edu	37	14	96788614	96788614	+	RNA	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	14	96788614	96788614	A	-	DEL	ATG2B	ENST00000488421	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG2B	HGNC	ENSG00000066739				76	0	0	35	5	12.5
MAGEL2	0	genome.wustl.edu	37	15	23890894	23890894	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	23890894	23890894	G	-	DEL	MAGEL2	ENST00000532292	human	ensembl	74_37	-1	known	frame_shift_del	c.187	p.Q63fs	0.990	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585				14	0	0	12	3	20
OCA2	0	genome.wustl.edu	37	15	28200305	28200305	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	28200305	28200305	T	-	DEL	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.K614fs	1.000	pfam_Cit_transptr-like_dom,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				129	0	0	76	28	26.9231
PLCB2	0	genome.wustl.edu	37	15	40584018	40584018	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	40584018	40584018	C	-	DEL	PLCB2	ENST00000558588	human	ensembl	74_37	-1	known	frame_shift_del	c.2634	p.H879fs	0.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCB2	HGNC	ENSG00000137841				33	0	0	22	5	18.5185
TRPM7	0	genome.wustl.edu	37	15	50925140	50925140	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	50925140	50925140	T	-	DEL	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	frame_shift_del	c.1057	p.T353fs	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				62	0	0	23	8	25.8065
NARG2	0	genome.wustl.edu	37	15	60745782	60745782	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	60745782	60745782	A	-	DEL	NARG2	ENST00000561114	human	ensembl	74_37	-1	putative	frame_shift_del	c.1145	p.F382fs	0.000	NULL	NULL	-	no_errors	NARG2	HGNC	ENSG00000128915				46	0	0	18	5	21.7391
UACA	0	genome.wustl.edu	37	15	70970500	70970500	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	70970500	70970500	T	-	DEL	UACA	ENST00000322954	human	ensembl	74_37	-1	known	frame_shift_del	c.937	p.I313fs	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831				103	0	0	66	5	7.04225
LARP6	0	genome.wustl.edu	37	15	71125328	71125328	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	71125328	71125328	T	-	DEL	LARP6	ENST00000299213	human	ensembl	74_37	-1	known	frame_shift_del	c.539	p.N180fs	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd,prints_Lupus_La	-	no_errors	LARP6	HGNC	ENSG00000166173				75	0	0	40	12	23.0769
C15orf39	0	genome.wustl.edu	37	15	75500243	75500244	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	75500243	75500244	-	A	INS	C15orf39	ENST00000360639	human	ensembl	74_37	+1	known	frame_shift_ins	c.1854_1855	p.I620fs	0.000:0.001	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173				50	0	0	27	7	20.5882
ANP32BP1	0	genome.wustl.edu	37	15	75614862	75614862	+	RNA	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	75614862	75614862	C	-	DEL	ANP32BP1	ENST00000564205	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	ANP32BP1	HGNC	ENSG00000259790				15	0	0	10	3	23.0769
NEIL1	0	genome.wustl.edu	37	15	75641547	75641547	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	75641547	75641547	T	-	DEL	NEIL1	ENST00000355059	human	ensembl	74_37	+1	known	frame_shift_del	c.301	p.Y102fs	1.000	pfam_DNA_glycosylase/AP_lyase_cat,superfamily_DNA_glycosylase/AP_lyase_cat,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398				121	0	0	56	16	22.2222
ENSG00000214646	0	genome.wustl.edu	37	15	78234390	78234390	+	RNA	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	78234390	78234390	G	-	DEL	ENSG00000214646	ENST00000568184	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	RP11-114H24.4	Clone_based_vega_gene	ENSG00000214646				8	0	0	4	2	33.3333
MESDC2	0	genome.wustl.edu	37	15	81271633	81271633	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	81271633	81271633	T	-	DEL	MESDC2	ENST00000261758	human	ensembl	74_37	-1	known	frame_shift_del	c.632	p.K211fs	1.000	pfam_Mesoderm_development_cand-2	pfam_Mesoderm_development_cand-2	-	no_errors	MESDC2	HGNC	ENSG00000117899				61	0	0	23	9	28.125
AGBL1	0	genome.wustl.edu	37	15	86807693	86807693	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	86807693	86807693	A	-	DEL	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	frame_shift_del	c.1153	p.N387fs	0.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748				28	0	0	25	4	13.7931
KIF7	0	genome.wustl.edu	37	15	90190140	90190140	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	90190140	90190140	C	-	DEL	KIF7	ENST00000394412	human	ensembl	74_37	-1	known	frame_shift_del	c.1709	p.G570fs	0.559	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813				89	0	0	61	21	25.6098
SV2B	0	genome.wustl.edu	37	15	91811750	91811750	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	15	91811750	91811750	T	-	DEL	SV2B	ENST00000330276	human	ensembl	74_37	+1	known	frame_shift_del	c.1288	p.F431fs	0.958	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2B	HGNC	ENSG00000185518				128	0	0	71	23	24.4681
CLCN7	0	genome.wustl.edu	37	16	1500618	1500620	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	1500618	1500620	GAA	-	DEL	CLCN7	ENST00000382745	human	ensembl	74_37	-1	known	in_frame_del	c.1497_1495	p.F499in_frame_del	1.000:1.000:1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249				43	0	0	19	6	24
PTX4	0	genome.wustl.edu	37	16	1536186	1536186	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	1536186	1536186	G	-	DEL	PTX4	ENST00000447419	human	ensembl	74_37	-1	known	frame_shift_del	c.1191	p.G398fs	0.011	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	PTX4	HGNC	ENSG00000251692				69	0	0	31	5	13.8889
AQP8	0	genome.wustl.edu	37	16	25232875	25232875	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	25232875	25232875	G	-	DEL	AQP8	ENST00000219660	human	ensembl	74_37	+1	known	frame_shift_del	c.358	p.M122fs	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_8,prints_MIP	-	no_errors	AQP8	HGNC	ENSG00000103375				184	0	0	123	25	16.8919
MAZ	0	genome.wustl.edu	37	16	29821430	29821438	+	Splice_Site	DEL	GCGGCAGCG	GCGGCAGCG	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	GCGGCAGCG	GCGGCAGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	29821430	29821438	GCGGCAGCG	-	DEL	MAZ	ENST00000563402	human	ensembl	74_37	+1	novel	splice_site_del	c.282-1_282-1	e3-1	0.113:0.122:0.038:0.077:0.083:0.008:0.879:0.863:0.228	-	-	-	no_errors	MAZ	HGNC	ENSG00000103495				54	0	0	36	5	12.1951
PRRT2	0	genome.wustl.edu	37	16	29825016	29825016	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	29825016	29825016	C	-	DEL	PRRT2	ENST00000567659	human	ensembl	74_37	+1	known	frame_shift_del	c.641	p.R217fs	1.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	PRRT2	HGNC	ENSG00000167371				24	0	0	9	5	35.7143
BCL7C	0	genome.wustl.edu	37	16	30899223	30899223	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	30899223	30899223	G	-	DEL	BCL7C	ENST00000215115	human	ensembl	74_37	-1	known	frame_shift_del	c.617	p.P206fs	1.000	NULL	pfam_BCL7	-	no_errors	BCL7C	HGNC	ENSG00000099385				260	1	0.383142	168	30	15.1515
CREBBP	0	genome.wustl.edu	37	16	3778282	3778282	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	3778282	3778282	G	-	DEL	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	frame_shift_del	c.6766	p.L2256fs	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				43	0	0	25	11	30.5556
NKD1	0	genome.wustl.edu	37	16	50667134	50667135	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	50667134	50667135	-	C	INS	NKD1	ENST00000268459	human	ensembl	74_37	+1	known	frame_shift_ins	c.855_856	p.R287fs	1.000:1.000	NULL	pfscan_EF_hand_dom	-	no_errors	NKD1	HGNC	ENSG00000140807				125	0	0	71	19	21.1111
NLRC5	0	genome.wustl.edu	37	16	57113198	57113201	+	Frame_Shift_Del	DEL	AGAT	AGAT	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AGAT	AGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	57113198	57113201	AGAT	-	DEL	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	frame_shift_del	c.5231_5234	p.I1745fs	0.001:0.000:0.014:0.019	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				68	0	0	22	7	24.1379
CTCF	0	genome.wustl.edu	37	16	67655481	67655481	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	67655481	67655481	A	-	DEL	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	frame_shift_del	c.1344	p.S450fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				47	0	0	44	3	6.38298
ZFHX3	0	genome.wustl.edu	37	16	72822585	72822586	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	72822585	72822586	-	G	INS	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	frame_shift_ins	c.9590_9589	p.Q3197fs	0.817:0.870	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				127	0	0	78	18	18.75
ADAMTS18	0	genome.wustl.edu	37	16	77356311	77356312	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	77356311	77356312	AA	-	DEL	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	frame_shift_del	c.2085_2084	p.F695fs	0.998:1.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				102	0	0	66	8	10.8108
NUDT7	0	genome.wustl.edu	37	16	77775744	77775744	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	77775744	77775744	A	-	DEL	NUDT7	ENST00000268533	human	ensembl	74_37	+1	known	frame_shift_del	c.614	p.K207fs	0.000	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT7	HGNC	ENSG00000140876				51	0	0	31	4	11.4286
BANP	0	genome.wustl.edu	37	16	88014616	88014616	+	RNA	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	88014616	88014616	T	-	DEL	BANP	ENST00000474563	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	BANP	HGNC	ENSG00000172530				28	0	0	12	3	20
ANKRD11	0	genome.wustl.edu	37	16	89349640	89349641	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	16	89349640	89349641	-	T	INS	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	frame_shift_ins	c.3310_3309	p.D1103fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				151	0	0	81	21	20.5882
CRK	0	genome.wustl.edu	37	17	1326755	1326757	+	RNA	DEL	AAA	AAA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	1326755	1326757	AAA	-	DEL	CRK	ENST00000572145	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.352:0.023:0.010	-	-	-	no_errors	CRK	HGNC	ENSG00000167193				39	0	0	16	11	40.7407
RAI1	0	genome.wustl.edu	37	17	17699359	17699359	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	17699359	17699359	C	-	DEL	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	frame_shift_del	c.3097	p.Q1035fs	0.989	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				8	0	0	3	3	50
ALDH3A1	0	genome.wustl.edu	37	17	19641649	19641649	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	19641649	19641649	G	-	DEL	ALDH3A1	ENST00000225740	human	ensembl	74_37	-1	known	frame_shift_del	c.1334	p.P445fs	0.889	superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602				131	0	0	71	12	14.4578
KIAA0100	0	genome.wustl.edu	37	17	26966334	26966334	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	26966334	26966334	T	-	DEL	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	frame_shift_del	c.1228	p.R410fs	0.999	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				99	0	0	70	21	23.0769
CRLF3	0	genome.wustl.edu	37	17	29123265	29123265	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	29123265	29123265	A	-	DEL	CRLF3	ENST00000324238	human	ensembl	74_37	-1	known	frame_shift_del	c.516	p.F172fs	0.989	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CRLF3	HGNC	ENSG00000176390				85	0	0	51	16	23.8806
TMEM132E	0	genome.wustl.edu	37	17	32953916	32953916	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	32953916	32953916	C	-	DEL	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	frame_shift_del	c.568	p.R192fs	0.996	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				54	0	0	33	10	23.2558
PIP4K2B	0	genome.wustl.edu	37	17	36955530	36955530	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	36955530	36955530	C	-	DEL	PIP4K2B	ENST00000269554	human	ensembl	74_37	-1	known	frame_shift_del	c.148	p.V50fs	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2B	HGNC	ENSG00000141720				106	0	0	41	13	24.0741
MED1	0	genome.wustl.edu	37	17	37564657	37564659	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	37564657	37564659	AGG	-	DEL	MED1	ENST00000300651	human	ensembl	74_37	-1	known	in_frame_del	c.3817_3815	p.S1272in_frame_del	1.000:1.000:1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				111	0	0	62	13	17.3333
CDC6	0	genome.wustl.edu	37	17	38449856	38449857	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	38449856	38449857	AT	-	DEL	CDC6	ENST00000209728	human	ensembl	74_37	+1	known	frame_shift_del	c.809_810	p.M271fs	0.453:0.405	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6/18	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6/18	-	no_errors	CDC6	HGNC	ENSG00000094804				82	0	0	65	11	14.4737
WNK4	0	genome.wustl.edu	37	17	40932828	40932828	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	40932828	40932828	C	-	DEL	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	frame_shift_del	c.112	p.P39fs	0.584	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				21	0	0	14	2	12.5
BRCA1	0	genome.wustl.edu	37	17	41246532	41246532	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	41246532	41246532	T	-	DEL	BRCA1	ENST00000471181	human	ensembl	74_37	-1	known	frame_shift_del	c.1016	p.K339fs	0.000	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,prints_BRCA1,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048				217	1	0.458716	164	37	18.408
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				110	0	0	80	24	23.0769
ANKRD40	0	genome.wustl.edu	37	17	48777220	48777221	+	In_Frame_Ins	INS	-	-	TCA			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	48777220	48777221	-	TCA	INS	ANKRD40	ENST00000285243	human	ensembl	74_37	-1	known	in_frame_ins	c.318_317	p.107in_frame_insD	0.002:0.003	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945				41	0	0	23	4	14.8148
LUC7L3	0	genome.wustl.edu	37	17	48827882	48827882	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	48827882	48827882	A	-	DEL	LUC7L3	ENST00000240304	human	ensembl	74_37	+1	known	frame_shift_del	c.1159	p.S389fs	1.000	NULL	pfam_Luc7-rel	-	no_errors	LUC7L3	HGNC	ENSG00000108848				120	0	0	60	18	23.0769
WFIKKN2	0	genome.wustl.edu	37	17	48917204	48917204	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	48917204	48917204	C	-	DEL	WFIKKN2	ENST00000311378	human	ensembl	74_37	+1	known	frame_shift_del	c.555	p.P187fs	1.000	NULL	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Netrin_module_non-TIMP,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Ig_V-set,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN2	HGNC	ENSG00000173714				58	0	0	37	6	13.9535
BZRAP1	0	genome.wustl.edu	37	17	56386700	56386702	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	56386700	56386702	CTC	-	DEL	BZRAP1	ENST00000355701	human	ensembl	74_37	-1	known	in_frame_del	c.3933_3931	p.E1311in_frame_del	1.000:1.000:1.000	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379				126	0	0	33	14	29.7872
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				187	0	0	64	30	31.9149
TRIM37	0	genome.wustl.edu	37	17	57134362	57134362	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	57134362	57134362	T	-	DEL	TRIM37	ENST00000262294	human	ensembl	74_37	-1	known	frame_shift_del	c.1073	p.N358fs	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pfscan_MATH	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC	ENSG00000108395				70	0	0	42	9	17.6471
STRADA	0	genome.wustl.edu	37	17	61781804	61781804	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	61781804	61781804	G	-	DEL	STRADA	ENST00000336174	human	ensembl	74_37	-1	known	frame_shift_del	c.997	p.R333fs	0.626	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STRADA	HGNC	ENSG00000266173				66	0	0	41	23	35.9375
AXIN2	0	genome.wustl.edu	37	17	63532585	63532585	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	63532585	63532585	C	-	DEL	AXIN2	ENST00000307078	human	ensembl	74_37	-1	known	frame_shift_del	c.1994	p.G665fs	0.436	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN2	HGNC	ENSG00000168646				59	0	0	29	14	32.5581
KIAA0753	0	genome.wustl.edu	37	17	6510506	6510506	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	6510506	6510506	T	-	DEL	KIAA0753	ENST00000361413	human	ensembl	74_37	-1	known	frame_shift_del	c.1914	p.K638fs	0.718	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920				235	0	0	133	31	18.9024
BPTF	0	genome.wustl.edu	37	17	65899951	65899951	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	65899951	65899951	A	-	DEL	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	frame_shift_del	c.2968	p.E993fs	0.993	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				33	0	0	7	7	50
SLC16A6	0	genome.wustl.edu	37	17	66270149	66270150	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	66270149	66270150	-	C	INS	SLC16A6	ENST00000327268	human	ensembl	74_37	-1	known	frame_shift_ins	c.295_294	p.L98fs	0.030:0.006	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932				61	0	0	35	12	25.5319
ABCA10	0	genome.wustl.edu	37	17	67218780	67218780	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	67218780	67218780	T	-	DEL	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	frame_shift_del	c.93	p.K31fs	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				101	0	0	60	6	9.09091
GRB2	0	genome.wustl.edu	37	17	73389745	73389745	+	RNA	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	73389745	73389745	G	-	DEL	GRB2	ENST00000583912	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GRB2	HGNC	ENSG00000177885				70	0	0	47	8	14.5455
ZBTB4	0	genome.wustl.edu	37	17	7366339	7366340	+	In_Frame_Ins	INS	-	-	TCC			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	7366339	7366340	-	TCC	INS	ZBTB4	ENST00000311403	human	ensembl	74_37	-1	known	in_frame_ins	c.1962_1961	p.655in_frame_insE	0.006:0.585	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282				53	0	0	25	9	26.4706
TRIM47	0	genome.wustl.edu	37	17	73870678	73870679	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	73870678	73870679	AA	-	DEL	TRIM47	ENST00000254816	human	ensembl	74_37	-1	known	frame_shift_del	c.1803_1802	p.F601fs	0.077:0.954	pfscan_B30.2/SPRY	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM47	HGNC	ENSG00000132481				124	0	0	54	23	29.8701
SRSF2	0	genome.wustl.edu	37	17	74732956	74732956	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	74732956	74732956	G	-	DEL	SRSF2	ENST00000359995	human	ensembl	74_37	-1	known	frame_shift_del	c.287	p.P96fs	0.326	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF2	HGNC	ENSG00000161547				55	0	0	39	10	20.4082
EFNB3	0	genome.wustl.edu	37	17	7612855	7612856	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	7612855	7612856	-	C	INS	EFNB3	ENST00000226091	human	ensembl	74_37	+1	known	frame_shift_ins	c.984_985	p.Q330fs	1.000:1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947				127	0	0	53	14	20.8955
CHD3	0	genome.wustl.edu	37	17	7798765	7798765	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	7798765	7798765	C	-	DEL	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	frame_shift_del	c.1612	p.R540fs	0.007	superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				156	0	0	117	7	5.64516
BAHCC1	0	genome.wustl.edu	37	17	79411725	79411726	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	79411725	79411726	-	C	INS	BAHCC1	ENST00000307745	human	ensembl	74_37	+1	known	frame_shift_ins	c.2544_2545	p.G850fs	1.000:1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	RP11-1055B8.7	Clone_based_vega_gene	ENSG00000171282				156	0	0	115	9	7.25806
CCDC57	0	genome.wustl.edu	37	17	80059474	80059474	+	RNA	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	80059474	80059474	C	-	DEL	CCDC57	ENST00000584717	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	CCDC57	HGNC	ENSG00000176155				40	0	0	25	7	21.875
RCVRN	0	genome.wustl.edu	37	17	9801335	9801336	+	RNA	INS	-	-	TG			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	17	9801335	9801336	-	TG	INS	RCVRN	ENST00000570909	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RCVRN	HGNC	ENSG00000109047				43	0	0	15	5	25
HAUS1	0	genome.wustl.edu	37	18	43685174	43685174	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	43685174	43685174	A	-	DEL	HAUS1	ENST00000282058	human	ensembl	74_37	+1	known	frame_shift_del	c.45	p.I18fs	1.000	NULL	NULL	-	no_errors	HAUS1	HGNC	ENSG00000152240				51	0	0	23	4	14.8148
SMAD7	0	genome.wustl.edu	37	18	46474794	46474795	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	46474794	46474795	-	G	INS	SMAD7	ENST00000262158	human	ensembl	74_37	-1	known	frame_shift_ins	c.627_626	p.P210fs	1.000:1.000	superfamily_SMAD_FHA_domain	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD7	HGNC	ENSG00000101665				57	0	0	52	8	13.3333
WDR7	0	genome.wustl.edu	37	18	54358513	54358513	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	54358513	54358513	G	-	DEL	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	frame_shift_del	c.784	p.D264fs	1.000	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				136	0	0	74	22	22.9167
SERPINB2	0	genome.wustl.edu	37	18	61569682	61569682	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	61569682	61569682	A	-	DEL	SERPINB2	ENST00000299502	human	ensembl	74_37	+1	known	frame_shift_del	c.723	p.N242fs	0.843	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB2	HGNC	ENSG00000197632				73	0	0	34	6	15
DSEL	0	genome.wustl.edu	37	18	65178798	65178798	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	65178798	65178798	A	-	DEL	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	frame_shift_del	c.3078	p.Q1027fs	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				88	0	0	71	16	18.3908
MBP	0	genome.wustl.edu	37	18	74778306	74778307	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	74778306	74778307	-	T	INS	MBP	ENST00000355994	human	ensembl	74_37	-1	known	frame_shift_ins	c.87_86	p.R30fs	0.000:0.000	NULL	pfam_Myelin_BP,prints_Myelin_BP	-	no_errors	MBP	HGNC	ENSG00000197971				59	0	0	31	5	13.8889
ANKRD12	0	genome.wustl.edu	37	18	9255247	9255247	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	18	9255247	9255247	A	-	DEL	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	frame_shift_del	c.1982	p.E663fs	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				42	0	0	21	7	25
ZNF433	0	genome.wustl.edu	37	19	12126523	12126523	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	12126523	12126523	T	-	DEL	ZNF433	ENST00000344980	human	ensembl	74_37	-1	known	frame_shift_del	c.1159	p.T387fs	0.778	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF433	HGNC	ENSG00000197647				54	0	0	34	10	22.7273
C19orf57	0	genome.wustl.edu	37	19	13993679	13993680	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	13993679	13993680	-	G	INS	C19orf57	ENST00000454313	human	ensembl	74_37	-1	known	frame_shift_ins	c.1943_1942	p.L648fs	0.000:0.000	NULL	NULL	-	no_errors	C19orf57	HGNC	ENSG00000132016				114	0	0	47	15	24.1935
C19orf44	0	genome.wustl.edu	37	19	16628088	16628090	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	16628088	16628090	GGA	-	DEL	C19orf44	ENST00000221671	human	ensembl	74_37	+1	known	in_frame_del	c.1950_1952	p.E652in_frame_del	0.973:0.988:0.994	NULL	NULL	-	no_errors	C19orf44	HGNC	ENSG00000105072				68	0	0	34	9	20.9302
FCHO1	0	genome.wustl.edu	37	19	17887479	17887480	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	17887479	17887480	-	C	INS	FCHO1	ENST00000252771	human	ensembl	74_37	+1	known	frame_shift_ins	c.1243_1244	p.R417fs	0.969:0.997	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,superfamily_Clathrin_mu_C,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	FCHO1	HGNC	ENSG00000130475				82	0	0	51	14	21.5385
ENSG00000266156	0	genome.wustl.edu	37	19	20988370	20988370	+	RNA	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	20988370	20988370	T	-	DEL	ENSG00000266156	ENST00000582722	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors	AC010329.1	Clone_based_ensembl_gene	ENSG00000266156				12	0	0	11	2	15.3846
ZNF66	0	genome.wustl.edu	37	19	20988745	20988745	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	20988745	20988745	A	-	DEL	ZNF66	ENST00000344519	human	ensembl	74_37	+1	known	frame_shift_del	c.339	p.G116fs	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF66	HGNC	ENSG00000160229				43	0	0	15	16	51.6129
ZNF724P	0	genome.wustl.edu	37	19	23406702	23406702	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	23406702	23406702	T	-	DEL	ZNF724P	ENST00000418100	human	ensembl	74_37	-1	novel	frame_shift_del	c.345	p.G116fs	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF724P	HGNC	ENSG00000196081				12	0	0	10	5	33.3333
SBSN	0	genome.wustl.edu	37	19	36019046	36019047	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	36019046	36019047	CT	-	DEL	SBSN	ENST00000518157	human	ensembl	74_37	-1	known	frame_shift_del	c.138_137	p.E46fs	1.000:1.000	NULL	NULL	-	no_errors	SBSN	HGNC	ENSG00000189001				218	1	0.456621	188	33	14.9321
SIPA1L3	0	genome.wustl.edu	37	19	38655514	38655514	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	38655514	38655514	G	-	DEL	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	frame_shift_del	c.4176	p.G1394fs	0.002	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				77	0	0	35	5	12.5
LTBP4	0	genome.wustl.edu	37	19	41115674	41115675	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	41115674	41115675	-	C	INS	LTBP4	ENST00000308370	human	ensembl	74_37	+1	known	frame_shift_ins	c.1782_1783	p.P596fs	0.000:0.996	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006				77	0	0	39	7	15.2174
ENSG00000269318	0	genome.wustl.edu	37	19	4357489	4357489	+	RNA	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	4357489	4357489	C	-	DEL	ENSG00000269318	ENST00000593524	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC007292.3	Clone_based_vega_gene	ENSG00000269318				30	0	0	19	6	24
RTN2	0	genome.wustl.edu	37	19	45996513	45996513	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	45996513	45996513	G	-	DEL	RTN2	ENST00000245923	human	ensembl	74_37	-1	known	frame_shift_del	c.938	p.P313fs	0.005	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744				182	0	0	104	35	25.1799
DMPK	0	genome.wustl.edu	37	19	46280835	46280836	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	46280835	46280836	AG	-	DEL	DMPK	ENST00000343373	human	ensembl	74_37	-1	known	frame_shift_del	c.926_925	p.L309fs	1.000:1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	DMPK	HGNC	ENSG00000104936				83	0	0	41	7	14.5833
ZNF114	0	genome.wustl.edu	37	19	48789818	48789818	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	48789818	48789818	T	-	DEL	ZNF114	ENST00000315849	human	ensembl	74_37	+1	known	frame_shift_del	c.937	p.Y315fs	0.070	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150				74	0	0	32	6	15.7895
LMTK3	0	genome.wustl.edu	37	19	49000732	49000732	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	49000732	49000732	G	-	DEL	LMTK3	ENST00000270238	human	ensembl	74_37	-1	known	frame_shift_del	c.3681	p.K1228fs	0.998	smart_Ser/Thr_dual-sp_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235				103	1	0.961538	53	9	14.5161
TEAD2	0	genome.wustl.edu	37	19	49850473	49850473	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	49850473	49850473	G	-	DEL	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	frame_shift_del	c.883	p.H295fs	0.961	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				330	1	0.302115	217	46	17.4905
ALDH16A1	0	genome.wustl.edu	37	19	49969002	49969002	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	49969002	49969002	C	-	DEL	ALDH16A1	ENST00000293350	human	ensembl	74_37	+1	known	frame_shift_del	c.1576	p.Y528fs	0.444	superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	-	no_errors	ALDH16A1	HGNC	ENSG00000161618				179	0	0	97	22	18.4874
ZNF616	0	genome.wustl.edu	37	19	52619867	52619867	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	52619867	52619867	T	-	DEL	ZNF616	ENST00000600228	human	ensembl	74_37	-1	known	frame_shift_del	c.550	p.T184fs	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611				100	0	0	54	12	18.1818
LOC101928780	0	genome.wustl.edu	37	19	54627847	54627848	+	RNA	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	54627847	54627848	-	C	INS	LOC101928780	ENST00000452097	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC012314.8	Clone_based_vega_gene	ENSG00000237017				264	0	0	151	18	10.6509
PPP1R12C	0	genome.wustl.edu	37	19	55607462	55607462	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	55607462	55607462	C	-	DEL	PPP1R12C	ENST00000263433	human	ensembl	74_37	-1	known	frame_shift_del	c.1110	p.I373fs	0.002	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12C	HGNC	ENSG00000125503				80	0	0	32	4	11.1111
SAFB2	0	genome.wustl.edu	37	19	5590343	5590343	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	5590343	5590343	C	-	DEL	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	frame_shift_del	c.2471	p.G824fs	0.985	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				23	0	0	5	4	44.4444
C19orf70	0	genome.wustl.edu	37	19	5679653	5679654	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	5679653	5679654	-	G	INS	C19orf70	ENST00000309324	human	ensembl	74_37	-1	known	frame_shift_ins	c.151_150	p.A50fs	0.975:0.000	NULL	NULL	-	no_errors	C19orf70	HGNC	ENSG00000174917				144	0	0	86	16	15.6863
RANBP3	0	genome.wustl.edu	37	19	5951588	5951588	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	5951588	5951588	T	-	DEL	RANBP3	ENST00000340578	human	ensembl	74_37	-1	known	frame_shift_del	c.98	p.N33fs	1.000	NULL	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823				29	0	0	23	6	20.6897
XAB2	0	genome.wustl.edu	37	19	7684652	7684657	+	In_Frame_Del	DEL	CTCGTC	CTCGTC	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CTCGTC	CTCGTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	7684652	7684657	CTCGTC	-	DEL	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	in_frame_del	c.2487_2482	p.DE828in_frame_del	0.994:1.000:0.999:0.821:0.993:1.000	NULL	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				443	0	0	286	31	9.77918
FBN3	0	genome.wustl.edu	37	19	8193948	8193949	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	8193948	8193949	-	G	INS	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	frame_shift_ins	c.2260_2259	p.G753fs	1.000:0.646	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				113	0	0	74	11	12.9412
HNRNPM	0	genome.wustl.edu	37	19	8528508	8528508	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	19	8528508	8528508	A	-	DEL	HNRNPM	ENST00000325495	human	ensembl	74_37	+1	known	frame_shift_del	c.376	p.A128fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_HnRNP_M_PY-NLS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPM	HGNC	ENSG00000099783				40	0	0	33	5	13.1579
AFF3	0	genome.wustl.edu	37	2	100217913	100217914	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	100217913	100217914	-	G	INS	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	frame_shift_ins	c.1430_1429	p.H477fs	1.000:0.997	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				26	0	0	23	4	14.8148
MAP4K4	0	genome.wustl.edu	37	2	102452431	102452432	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	102452431	102452432	-	A	INS	MAP4K4	ENST00000324219	human	ensembl	74_37	+1	known	frame_shift_ins	c.764_765	p.W258fs	1.000:0.996	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054				23	0	0	28	7	20
ACVR2A	0	genome.wustl.edu	37	2	148657041	148657041	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	148657041	148657041	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.278	p.D96fs	1.000	pfam_Activin_rcpt,prints_TGFB_receptor	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				100	1	0.990099	51	26	33.7662
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				105	1	0.943396	48	35	42.1687
RIF1	0	genome.wustl.edu	37	2	152316583	152316583	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	152316583	152316583	T	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.3025	p.L1010fs	0.976	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				26	0	0	16	2	11.1111
ACVR1C	0	genome.wustl.edu	37	2	158406868	158406879	+	In_Frame_Del	DEL	GTCCTTGCAATT	GTCCTTGCAATT	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	GTCCTTGCAATT	GTCCTTGCAATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	158406868	158406879	GTCCTTGCAATT	-	DEL	ACVR1C	ENST00000243349	human	ensembl	74_37	-1	known	in_frame_del	c.581_570	p.ARTI192in_frame_del	1.000:1.000:1.000:1.000:0.984:0.676:1.000:1.000:0.996:1.000:1.000:0.995	pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1C	HGNC	ENSG00000123612				104	0	0	91	5	5.20833
KCNH7	0	genome.wustl.edu	37	2	163693269	163693270	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	163693269	163693270	-	T	INS	KCNH7	ENST00000332142	human	ensembl	74_37	-1	known	frame_shift_ins	c.85_84	p.F28fs	1.000:1.000	superfamily_PAS	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611				30	0	0	12	7	36.8421
SCN3A	0	genome.wustl.edu	37	2	166010981	166010981	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	166010981	166010981	T	-	DEL	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	frame_shift_del	c.1361	p.K454fs	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				100	0	0	53	18	25.3521
LRP2	0	genome.wustl.edu	37	2	169997024	169997025	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	169997024	169997025	-	G	INS	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	frame_shift_ins	c.13140_13139	p.C4381fs	1.000:1.000	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				101	1	0.980392	55	14	20.2899
SSB	0	genome.wustl.edu	37	2	170665008	170665008	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	170665008	170665008	A	-	DEL	SSB	ENST00000260956	human	ensembl	74_37	+1	known	frame_shift_del	c.571	p.N193fs	1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	SSB	HGNC	ENSG00000138385				71	0	0	21	11	34.375
CYBRD1	0	genome.wustl.edu	37	2	172410001	172410001	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	172410001	172410001	T	-	DEL	CYBRD1	ENST00000321348	human	ensembl	74_37	+1	known	frame_shift_del	c.548	p.S185fs	0.877	pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYBRD1	HGNC	ENSG00000071967				44	0	0	29	9	23.6842
RBM45	0	genome.wustl.edu	37	2	178988919	178988920	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	178988919	178988920	-	A	INS	RBM45	ENST00000286070	human	ensembl	74_37	+1	known	frame_shift_ins	c.1134_1135	p.A381fs	1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM45	HGNC	ENSG00000155636				78	0	0	30	7	18.9189
COL3A1	0	genome.wustl.edu	37	2	189851835	189851837	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	189851835	189851837	AGG	-	DEL	COL3A1	ENST00000304636	human	ensembl	74_37	+1	known	in_frame_del	c.498_500	p.G168in_frame_del	0.003:0.039:0.030	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542				106	0	0	82	15	15.4639
DNAH7	0	genome.wustl.edu	37	2	196801373	196801374	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	196801373	196801374	-	A	INS	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_ins	c.3222_3221	p.L1074fs	1.000:1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				56	0	0	32	6	15.7895
TRAK2	0	genome.wustl.edu	37	2	202245721	202245721	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	202245721	202245721	G	-	DEL	TRAK2	ENST00000332624	human	ensembl	74_37	-1	known	frame_shift_del	c.2290	p.L764fs	0.033	pfam_Traffickng_kinesin-bd_prot_dom	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993				238	0	0	154	18	10.4651
ALS2CR11	0	genome.wustl.edu	37	2	202352566	202352566	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	202352566	202352566	T	-	DEL	ALS2CR11	ENST00000286195	human	ensembl	74_37	-1	known	frame_shift_del	c.1641	p.V548fs	0.040	NULL	superfamily_C2_dom	-	no_errors	ALS2CR11	HGNC	ENSG00000155754				159	0	0	74	29	28.1553
BMPR2	0	genome.wustl.edu	37	2	203420130	203420130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	203420130	203420130	A	-	DEL	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	frame_shift_del	c.1742	p.N583fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				106	0	0	58	9	13.4328
ABI2	0	genome.wustl.edu	37	2	204193276	204193276	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	204193276	204193276	G	-	DEL	ABI2	ENST00000295851	human	ensembl	74_37	+1	known	frame_shift_del	c.39	p.G15fs	1.000	NULL	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI2	HGNC	ENSG00000138443				57	0	0	23	5	17.8571
CNPPD1	0	genome.wustl.edu	37	2	220037561	220037561	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	220037561	220037561	G	-	DEL	CNPPD1	ENST00000360507	human	ensembl	74_37	-1	known	frame_shift_del	c.980	p.P327fs	0.896	NULL	pfam_Cyclin_PHO80-like,superfamily_Cyclin-like	-	no_errors	CNPPD1	HGNC	ENSG00000115649				53	0	0	39	6	13.3333
SPEG	0	genome.wustl.edu	37	2	220330808	220330808	+	RNA	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	220330808	220330808	C	-	DEL	SPEG	ENST00000462545	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPEG	HGNC	ENSG00000072195				30	0	0	22	2	8.33333
SLC4A3	0	genome.wustl.edu	37	2	220504282	220504282	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	220504282	220504282	G	-	DEL	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	frame_shift_del	c.3183	p.L1064fs	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				146	0	0	70	18	20.4545
IRS1	0	genome.wustl.edu	37	2	227661663	227661664	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	227661663	227661664	-	C	INS	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	frame_shift_ins	c.1792_1791	p.H597fs	1.000:0.995	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				67	0	0	45	3	6.25
RHBDD1	0	genome.wustl.edu	37	2	227729594	227729594	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	227729594	227729594	A	-	DEL	RHBDD1	ENST00000341329	human	ensembl	74_37	+1	known	frame_shift_del	c.185	p.D64fs	0.007	pfam_Peptidase_S54_rhomboid_dom	pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDD1	HGNC	ENSG00000144468				69	0	0	72	13	15.2941
LINC00471	0	genome.wustl.edu	37	2	232373778	232373778	+	RNA	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	232373778	232373778	C	-	DEL	LINC00471	ENST00000313064	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00471	HGNC	ENSG00000181798				155	0	0	103	19	15.5738
AGAP1	0	genome.wustl.edu	37	2	236649677	236649677	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	236649677	236649677	C	-	DEL	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	frame_shift_del	c.381	p.P129fs	0.952	pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				77	0	0	38	7	15.5556
CXXC11	0	genome.wustl.edu	37	2	242814375	242814375	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	242814375	242814375	C	-	DEL	CXXC11	ENST00000343216	human	ensembl	74_37	+1	known	frame_shift_del	c.668	p.P225fs	0.000	NULL	NULL	-	no_errors	CXXC11	HGNC	ENSG00000188011				36	0	0	25	4	13.7931
ENSG00000268412	0	genome.wustl.edu	37	2	26251415	26251415	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	26251415	26251415	G	-	DEL	ENSG00000268412	ENST00000599234	human	ensembl	74_37	-1	novel	frame_shift_del	c.67	p.L23fs	0.967	pfam_UPF0434/Trm112	pfam_UPF0434/Trm112	-	no_errors	AC013449.1	Clone_based_ensembl_gene	ENSG00000268412				37	0	0	16	5	23.8095
MAPRE3	0	genome.wustl.edu	37	2	27248517	27248517	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	27248517	27248517	C	-	DEL	MAPRE3	ENST00000233121	human	ensembl	74_37	+1	known	frame_shift_del	c.536	p.C182fs	1.000	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,superfamily_EB1_C,pfscan_CH-domain	-	no_errors	MAPRE3	HGNC	ENSG00000084764				127	0	0	48	36	42.8571
FNDC4	0	genome.wustl.edu	37	2	27717517	27717517	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	27717517	27717517	G	-	DEL	FNDC4	ENST00000264703	human	ensembl	74_37	-1	known	frame_shift_del	c.30	p.S11fs	0.915	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC4	HGNC	ENSG00000115226				29	0	0	11	3	21.4286
CEBPZ	0	genome.wustl.edu	37	2	37454908	37454908	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	37454908	37454908	T	-	DEL	CEBPZ	ENST00000234170	human	ensembl	74_37	-1	known	frame_shift_del	c.1428	p.D477fs	1.000	superfamily_ARM-type_fold	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	CEBPZ	HGNC	ENSG00000115816				30	0	0	16	5	23.8095
OXER1	0	genome.wustl.edu	37	2	42991089	42991089	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	42991089	42991089	C	-	DEL	OXER1	ENST00000378661	human	ensembl	74_37	-1	known	frame_shift_del	c.231	p.S78fs	0.001	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	OXER1	HGNC	ENSG00000162881				36	0	0	24	4	14.2857
PPM1B	0	genome.wustl.edu	37	2	44459529	44459529	+	RNA	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	44459529	44459529	A	-	DEL	PPM1B	ENST00000459690	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PPM1B	HGNC	ENSG00000138032				65	0	0	46	10	17.8571
UGP2	0	genome.wustl.edu	37	2	64069278	64069280	+	RNA	DEL	AAA	AAA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	64069278	64069280	AAA	-	DEL	UGP2	ENST00000484056	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.271:0.359:0.509	-	-	-	no_errors	UGP2	HGNC	ENSG00000169764				61	0	0	31	19	38
REG1A	0	genome.wustl.edu	37	2	79349995	79349995	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	79349995	79349995	C	-	DEL	REG1A	ENST00000233735	human	ensembl	74_37	+1	known	frame_shift_del	c.350	p.L118fs	0.003	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	REG1A	HGNC	ENSG00000115386				217	0	0	164	29	15.0259
RPIA	0	genome.wustl.edu	37	2	89036154	89036155	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	89036154	89036155	-	G	INS	RPIA	ENST00000283646	human	ensembl	74_37	+1	known	frame_shift_ins	c.699_700	p.V235fs	1.000:1.000	pfam_Ribose5P_isomerase_typA,tigrfam_Ribose5P_isomerase_typA	pfam_Ribose5P_isomerase_typA,tigrfam_Ribose5P_isomerase_typA	-	no_errors	RPIA	HGNC	ENSG00000153574				249	0	0	155	36	18.8482
ZNF2	0	genome.wustl.edu	37	2	95847120	95847120	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	2	95847120	95847120	T	-	DEL	ZNF2	ENST00000340539	human	ensembl	74_37	+1	known	frame_shift_del	c.547	p.F184fs	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF2	HGNC	ENSG00000163067				178	0	0	97	21	17.7966
KIF16B	0	genome.wustl.edu	37	20	16348120	16348120	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	16348120	16348120	A	-	DEL	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	frame_shift_del	c.3850	p.Y1284fs	0.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				127	0	0	92	20	17.8571
DNMT3B	0	genome.wustl.edu	37	20	31375160	31375160	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	31375160	31375160	C	-	DEL	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	frame_shift_del	c.557	p.Y188fs	0.997	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				107	0	0	85	17	16.6667
CBFA2T2	0	genome.wustl.edu	37	20	32224505	32224505	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	32224505	32224505	A	-	DEL	CBFA2T2	ENST00000346541	human	ensembl	74_37	+1	known	frame_shift_del	c.1315	p.T441fs	1.000	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1	-	no_errors	CBFA2T2	HGNC	ENSG00000078699				115	0	0	77	7	8.33333
PCIF1	0	genome.wustl.edu	37	20	44569252	44569253	+	Splice_Site	DEL	GT	GT	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	44569252	44569253	GT	-	DEL	PCIF1	ENST00000372409	human	ensembl	74_37	+1	known	splice_site_del	c.387+1_387+1	e3+1	1.000:1.000	-	-	-	no_errors	PCIF1	HGNC	ENSG00000100982				20	0	0	13	2	13.3333
SLC13A3	0	genome.wustl.edu	37	20	45192098	45192098	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	45192098	45192098	G	-	DEL	SLC13A3	ENST00000279027	human	ensembl	74_37	-1	known	frame_shift_del	c.1587	p.N530fs	1.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296				87	0	0	34	13	27.6596
DDX27	0	genome.wustl.edu	37	20	47858504	47858504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	47858504	47858504	A	-	DEL	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	frame_shift_del	c.2065	p.K691fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				103	1	0.961538	47	26	35.6164
ADNP	0	genome.wustl.edu	37	20	49508146	49508146	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	49508146	49508146	T	-	DEL	ADNP	ENST00000349014	human	ensembl	74_37	-1	known	frame_shift_del	c.3105	p.V1036fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126				160	0	0	97	26	21.1382
PCMTD2	0	genome.wustl.edu	37	20	62904825	62904827	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	20	62904825	62904827	GAA	-	DEL	PCMTD2	ENST00000308824	human	ensembl	74_37	+1	known	in_frame_del	c.958_960	p.E323in_frame_del	1.000:1.000:0.996	NULL	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880				178	0	0	78	11	12.3596
NRIP1	0	genome.wustl.edu	37	21	16338330	16338330	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	16338330	16338330	T	-	DEL	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	frame_shift_del	c.2184	p.E729fs	0.998	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				38	0	0	32	8	20
USP16	0	genome.wustl.edu	37	21	30426506	30426508	+	In_Frame_Del	DEL	TAA	TAA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	TAA	TAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	30426506	30426508	TAA	-	DEL	USP16	ENST00000334352	human	ensembl	74_37	+1	known	in_frame_del	c.2470_2472	p.*824in_frame_del	0.997:0.987:0.983	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP16	HGNC	ENSG00000156256				34	0	0	13	3	18.75
ITSN1	0	genome.wustl.edu	37	21	35209309	35209309	+	RNA	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	35209309	35209309	C	-	DEL	ITSN1	ENST00000472548	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ITSN1	HGNC	ENSG00000205726				266	0	0	185	38	17.0404
DOPEY2	0	genome.wustl.edu	37	21	37586451	37586452	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	37586451	37586452	-	T	INS	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	frame_shift_ins	c.977_978	p.E329fs	1.000:1.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				75	0	0	30	8	21.0526
MORC3	0	genome.wustl.edu	37	21	37741943	37741945	+	In_Frame_Del	DEL	TAA	TAA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	TAA	TAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	37741943	37741945	TAA	-	DEL	MORC3	ENST00000400485	human	ensembl	74_37	+1	known	in_frame_del	c.2277_2279	p.N760in_frame_del	1.000:0.996:0.996	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256				119	0	0	70	19	21.3483
DSCAM	0	genome.wustl.edu	37	21	41496183	41496183	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	41496183	41496183	G	-	DEL	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	frame_shift_del	c.3635	p.P1212fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				188	0	0	122	26	17.5676
COL18A1	0	genome.wustl.edu	37	21	46925297	46925297	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	46925297	46925297	C	-	DEL	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	frame_shift_del	c.4284	p.P1430fs	0.947	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				15	0	0	6	3	33.3333
FTCD	0	genome.wustl.edu	37	21	47571590	47571591	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	47571590	47571591	-	C	INS	FTCD	ENST00000359679	human	ensembl	74_37	-1	known	frame_shift_ins	c.518_517	p.A173fs	1.000:1.000	pfam_Formiminotransferase_N,superfamily_FormiminoTrfase_N/C_subdom,tigrfam_Formiminotransferase_cat	pfam_Formiminotransferase_N,pfam_Formiminotransferase_C,pfam_Cyclodeamin/CycHdrlase,superfamily_FormiminoTrfase_N/C_subdom,superfamily_Cyclodeamin/CycHdrlase,tigrfam_Formiminotransferase_cat	-	no_errors	FTCD	HGNC	ENSG00000160282				118	0	0	46	16	25.8065
MCM3AP	0	genome.wustl.edu	37	21	47662805	47662805	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	21	47662805	47662805	A	-	DEL	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	frame_shift_del	c.5337	p.F1779fs	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				91	0	0	40	8	16.6667
CECR1	0	genome.wustl.edu	37	22	17690424	17690424	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	17690424	17690424	C	-	DEL	CECR1	ENST00000262607	human	ensembl	74_37	-1	known	frame_shift_del	c.144	p.R49fs	0.052	pfam_A_deaminase_N,tigrfam_Ad_deam-like	pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like	-	no_errors	CECR1	HGNC	ENSG00000093072				60	0	0	30	4	11.7647
LIMK2	0	genome.wustl.edu	37	22	31672776	31672777	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	31672776	31672777	-	C	INS	LIMK2	ENST00000340552	human	ensembl	74_37	+1	putative	frame_shift_ins	c.1711_1712	p.G574fs	0.995:0.996	smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PP1_inhibitor,pfam_PDZ,pfam_Znf_LIM,superfamily_Kinase-like_dom,superfamily_PP1_inhibitor,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541				25	0	0	9	7	43.75
C22orf24	0	genome.wustl.edu	37	22	32334105	32334105	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	32334105	32334105	A	-	DEL	C22orf24	ENST00000543051	human	ensembl	74_37	-1	known	frame_shift_del	c.149	p.F50fs	0.000	NULL	NULL	-	no_errors	C22orf24	HGNC	ENSG00000128254				130	0	0	71	24	25.2632
SSTR3	0	genome.wustl.edu	37	22	37602749	37602749	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	37602749	37602749	C	-	DEL	SSTR3	ENST00000328544	human	ensembl	74_37	-1	known	frame_shift_del	c.1094	p.G365fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_3,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR3	HGNC	ENSG00000183473				61	0	0	27	15	35.7143
DDX17	0	genome.wustl.edu	37	22	38895455	38895455	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	38895455	38895455	C	-	DEL	DDX17	ENST00000396821	human	ensembl	74_37	-1	known	frame_shift_del	c.488	p.G163fs	0.996	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201				181	0	0	116	34	22.6667
SLC25A17	0	genome.wustl.edu	37	22	41195058	41195058	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	41195058	41195058	A	-	DEL	SLC25A17	ENST00000435456	human	ensembl	74_37	-1	known	frame_shift_del	c.84	p.L30fs	0.972	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A17	HGNC	ENSG00000100372				66	0	0	48	11	18.6441
MLC1	0	genome.wustl.edu	37	22	50502593	50502595	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	50502593	50502595	AGC	-	DEL	MLC1	ENST00000311597	human	ensembl	74_37	-1	known	in_frame_del	c.929_927	p.L310in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	MLC1	HGNC	ENSG00000100427				31	0	0	32	5	13.5135
PLXNB2	0	genome.wustl.edu	37	22	50718147	50718147	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	50718147	50718147	T	-	DEL	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	frame_shift_del	c.4301	p.K1434fs	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				232	0	0	171	22	11.399
ARSA	0	genome.wustl.edu	37	22	51063611	51063611	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	22	51063611	51063611	G	-	DEL	ARSA	ENST00000216124	human	ensembl	74_37	-1	known	frame_shift_del	c.1492	p.R498fs	0.004	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSA	HGNC	ENSG00000100299				14	0	0	4	2	33.3333
CCDC37	0	genome.wustl.edu	37	3	126142183	126142183	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	126142183	126142183	C	-	DEL	CCDC37	ENST00000393425	human	ensembl	74_37	+1	known	frame_shift_del	c.1101	p.T370fs	0.000	NULL	superfamily_SuperAg_toxin_C	-	no_errors	CCDC37	HGNC	ENSG00000163885				78	0	0	48	6	11.1111
UROC1	0	genome.wustl.edu	37	3	126220106	126220106	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	126220106	126220106	T	-	DEL	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	frame_shift_del	c.920	p.K307fs	1.000	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				238	1	0.41841	162	37	18.593
IFT122	0	genome.wustl.edu	37	3	129231234	129231234	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	129231234	129231234	C	-	DEL	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	frame_shift_del	c.3119	p.S1042fs	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913				312	0	0	185	37	16.6667
NPHP3	0	genome.wustl.edu	37	3	132438662	132438662	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	132438662	132438662	T	-	DEL	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	frame_shift_del	c.406	p.T136fs	1.000	NULL	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				24	0	0	14	7	33.3333
PBX2P1	0	genome.wustl.edu	37	3	142895292	142895292	+	RNA	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	142895292	142895292	G	-	DEL	PBX2P1	ENST00000560287	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171				68	0	0	28	8	22.2222
EAF1-AS1	0	genome.wustl.edu	37	3	15480599	15480599	+	RNA	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	15480599	15480599	T	-	DEL	EAF1-AS1	ENST00000494875	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.925	-	-	-	no_errors	EAF1-AS1	HGNC	ENSG00000249786				21	0	0	15	9	37.5
WDR49	0	genome.wustl.edu	37	3	167223102	167223102	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	167223102	167223102	T	-	DEL	WDR49	ENST00000308378	human	ensembl	74_37	-1	known	frame_shift_del	c.1821	p.K607fs	0.005	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776				66	0	0	31	7	18.4211
EIF5A2	0	genome.wustl.edu	37	3	170624844	170624844	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	170624844	170624844	T	-	DEL	EIF5A2	ENST00000295822	human	ensembl	74_37	-1	known	frame_shift_del	c.204	p.K68fs	0.994	superfamily_Translation_prot_SH3-like,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	pfam_Transl_elong_IF5A_C,pfam_KOW,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	-	no_errors	EIF5A2	HGNC	ENSG00000163577				89	0	0	62	8	11.4286
B3GNT5	0	genome.wustl.edu	37	3	182987674	182987674	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	182987674	182987674	T	-	DEL	B3GNT5	ENST00000326505	human	ensembl	74_37	+1	known	frame_shift_del	c.88	p.W32fs	0.912	NULL	pfam_Glyco_trans_31,superfamily_Luciferase-like_dom	-	no_errors	B3GNT5	HGNC	ENSG00000176597				119	1	0.833333	88	26	22.807
SLC51A	0	genome.wustl.edu	37	3	195955038	195955038	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	195955038	195955038	G	-	DEL	SLC51A	ENST00000296327	human	ensembl	74_37	+1	known	frame_shift_del	c.415	p.K141fs	1.000	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	SLC51A	HGNC	ENSG00000163959				441	0	0	319	60	15.8311
IQCG	0	genome.wustl.edu	37	3	197670888	197670889	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	197670888	197670889	-	T	INS	IQCG	ENST00000265239	human	ensembl	74_37	-1	known	frame_shift_ins	c.43_42	p.V14fs	0.000:0.001	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473				178	0	0	111	26	18.9781
PDCD6IP	0	genome.wustl.edu	37	3	33896762	33896762	+	RNA	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	33896762	33896762	T	-	DEL	PDCD6IP	ENST00000495235	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.286	-	-	-	no_errors	PDCD6IP	HGNC	ENSG00000170248				41	0	0	25	4	13.7931
ACAA1	0	genome.wustl.edu	37	3	38167150	38167150	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	38167150	38167150	G	-	DEL	ACAA1	ENST00000333167	human	ensembl	74_37	-1	known	frame_shift_del	c.1105	p.L369fs	0.916	pfam_Thiolase_C,pfam_ACP_syn_III_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,pfam_ACP_syn_III_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAA1	HGNC	ENSG00000060971				88	0	0	61	15	19.7368
SCN11A	0	genome.wustl.edu	37	3	38949441	38949441	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	38949441	38949441	T	-	DEL	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	frame_shift_del	c.1472	p.K491fs	0.352	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				58	0	0	40	14	25.9259
PRSS45	0	genome.wustl.edu	37	3	46784467	46784467	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	46784467	46784467	G	-	DEL	PRSS45	ENST00000442359	human	ensembl	74_37	-1	known	frame_shift_del	c.389	p.P130fs	0.005	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS45	HGNC	ENSG00000188086				59	0	0	30	7	18.9189
FBXW12	0	genome.wustl.edu	37	3	48419900	48419900	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	48419900	48419900	A	-	DEL	FBXW12	ENST00000296438	human	ensembl	74_37	+1	known	frame_shift_del	c.499	p.T169fs	0.000	superfamily_Quino_amine_DH_bsu	pfam_F-box_dom,superfamily_Quino_amine_DH_bsu,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXW12	HGNC	ENSG00000164049				42	0	0	28	9	24.3243
RBM6	0	genome.wustl.edu	37	3	50099450	50099450	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	50099450	50099450	A	-	DEL	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	frame_shift_del	c.2495	p.K834fs	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				57	0	0	34	10	22.7273
MAPKAPK3	0	genome.wustl.edu	37	3	50655080	50655080	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	50655080	50655080	G	-	DEL	MAPKAPK3	ENST00000357955	human	ensembl	74_37	+1	known	frame_shift_del	c.84	p.R31fs	0.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738				181	0	0	83	21	20.1923
NISCH	0	genome.wustl.edu	37	3	52524146	52524146	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	52524146	52524146	C	-	DEL	NISCH	ENST00000345716	human	ensembl	74_37	+1	known	frame_shift_del	c.3512	p.P1172fs	1.000	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322				62	0	0	26	14	35
PBRM1	0	genome.wustl.edu	37	3	52678784	52678784	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	52678784	52678784	T	-	DEL	PBRM1	ENST00000296302	human	ensembl	74_37	-1	known	frame_shift_del	c.835	p.I279fs	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_box_dom,superfamily_Bromodomain,superfamily_HMG_box_dom,smart_Bromodomain,smart_BAH_dom,smart_HMG_box_dom,pfscan_BAH_dom,pfscan_HMG_box_dom,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939				28	0	0	11	6	35.2941
ACTR8	0	genome.wustl.edu	37	3	53910109	53910110	+	Splice_Site	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	53910109	53910110	-	G	INS	ACTR8	ENST00000335754	human	ensembl	74_37	-1	known	splice_site_ins	c.779-3_779-2	e7-2	1.000:0.204	-	-	-	no_errors	ACTR8	HGNC	ENSG00000113812				38	0	0	32	7	17.9487
FLNB	0	genome.wustl.edu	37	3	58089787	58089788	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	58089787	58089788	-	G	INS	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	frame_shift_ins	c.1585_1586	p.H532fs	1.000:1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				98	0	0	65	13	16.6667
MAGI1	0	genome.wustl.edu	37	3	65372849	65372850	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	65372849	65372850	-	TC	INS	MAGI1	ENST00000330909	human	ensembl	74_37	-1	known	frame_shift_ins	c.2469_2468	p.I824fs	1.000:1.000	superfamily_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				93	0	0	84	14	14.2857
BRPF1	0	genome.wustl.edu	37	3	9786026	9786027	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	9786026	9786027	-	A	INS	BRPF1	ENST00000383829	human	ensembl	74_37	+1	known	frame_shift_ins	c.2754_2755	p.N919fs	0.993:1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983				38	0	0	17	4	19.0476
GPR15	0	genome.wustl.edu	37	3	98251487	98251487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	98251487	98251487	T	-	DEL	GPR15	ENST00000284311	human	ensembl	74_37	+1	known	frame_shift_del	c.610	p.F205fs	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	GPR15	HGNC	ENSG00000154165				99	0	0	48	25	34.2466
COL8A1	0	genome.wustl.edu	37	3	99513830	99513830	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	3	99513830	99513830	G	-	DEL	COL8A1	ENST00000261037	human	ensembl	74_37	+1	known	frame_shift_del	c.1085	p.G363fs	0.644	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810				33	0	0	11	2	15.3846
SPRY1	0	genome.wustl.edu	37	4	124322833	124322834	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	124322833	124322834	-	GA	INS	SPRY1	ENST00000339241	human	ensembl	74_37	+1	known	frame_shift_ins	c.87_88	p.I32fs	0.999:1.000	NULL	pfam_Sprouty	-	no_errors	SPRY1	HGNC	ENSG00000164056				217	0	0	148	38	20.4301
ZNF330	0	genome.wustl.edu	37	4	142143532	142143532	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	142143532	142143532	A	-	DEL	ZNF330	ENST00000262990	human	ensembl	74_37	+1	known	frame_shift_del	c.7	p.K5fs	1.000	pfam_NOA36	pfam_NOA36	-	no_errors	ZNF330	HGNC	ENSG00000109445				26	0	0	13	4	23.5294
RGS12	0	genome.wustl.edu	37	4	3430399	3430399	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	3430399	3430399	A	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.3526	p.K1178fs	1.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				58	0	0	51	5	8.92857
KLF3	0	genome.wustl.edu	37	4	38690460	38690460	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	38690460	38690460	A	-	DEL	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	frame_shift_del	c.312	p.K106fs	0.008	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				125	0	0	99	24	19.5122
KLF3	0	genome.wustl.edu	37	4	38691476	38691476	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	38691476	38691476	C	-	DEL	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	frame_shift_del	c.671	p.P226fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				247	1	0.403226	227	50	18.0505
RFC1	0	genome.wustl.edu	37	4	39324961	39324961	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	39324961	39324961	T	-	DEL	RFC1	ENST00000381897	human	ensembl	74_37	-1	known	frame_shift_del	c.719	p.K240fs	1.000	superfamily_P-loop_NTPase,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_P-loop_NTPase,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928				68	0	0	58	20	25.641
C4orf6	0	genome.wustl.edu	37	4	5527116	5527116	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	5527116	5527116	T	-	DEL	C4orf6	ENST00000195455	human	ensembl	74_37	+1	known	frame_shift_del	c.59	p.F23fs	0.077	NULL	NULL	-	no_errors	C4orf6	HGNC	ENSG00000082929				20	0	0	7	6	46.1538
CEP135	0	genome.wustl.edu	37	4	56858229	56858229	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	56858229	56858229	A	-	DEL	CEP135	ENST00000257287	human	ensembl	74_37	+1	known	frame_shift_del	c.1987	p.T664fs	1.000	NULL	superfamily_Prefoldin,superfamily_EB1_C	-	no_errors	CEP135	HGNC	ENSG00000174799				63	0	0	55	6	9.83607
AMBN	0	genome.wustl.edu	37	4	71467163	71467164	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	71467163	71467164	-	A	INS	AMBN	ENST00000322937	human	ensembl	74_37	+1	known	frame_shift_ins	c.323_324	p.P109fs	1.000:1.000	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522				271	1	0.367647	166	53	24.2009
SLC4A4	0	genome.wustl.edu	37	4	72215771	72215772	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	72215771	72215772	TC	-	DEL	SLC4A4	ENST00000425175	human	ensembl	74_37	+1	known	frame_shift_del	c.532_533	p.L179fs	1.000:1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493				122	0	0	101	26	20.4724
AFP	0	genome.wustl.edu	37	4	74313372	74313372	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	74313372	74313372	A	-	DEL	AFP	ENST00000395792	human	ensembl	74_37	+1	known	frame_shift_del	c.1037	p.N348fs	0.959	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_Alpha-fetoprotein	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_Alpha-fetoprotein,prints_ALB/AFP/VDB	-	no_errors	AFP	HGNC	ENSG00000081051				45	0	0	28	6	17.6471
AFM	0	genome.wustl.edu	37	4	74347531	74347532	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	74347531	74347532	-	T	INS	AFM	ENST00000226355	human	ensembl	74_37	+1	known	frame_shift_ins	c.39_40	p.L15fs	0.970:0.970	pirsf_Serum_albumin/AFP	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_ALB/AFP/VDB,prints_Alpha-fetoprotein	-	no_errors	AFM	HGNC	ENSG00000079557				65	0	0	15	4	21.0526
SDAD1	0	genome.wustl.edu	37	4	76877153	76877153	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	76877153	76877153	T	-	DEL	SDAD1	ENST00000356260	human	ensembl	74_37	-1	known	frame_shift_del	c.1991	p.N664fs	0.996	pfam_SDA1_dom	pfam_SDA1_dom,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold	-	no_errors	SDAD1	HGNC	ENSG00000198301				251	0	0	136	51	27.2727
ABLIM2	0	genome.wustl.edu	37	4	8021969	8021969	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	4	8021969	8021969	G	-	DEL	ABLIM2	ENST00000447017	human	ensembl	74_37	-1	known	frame_shift_del	c.1329	p.S444fs	0.908	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995				74	0	0	36	7	16.2791
SRFBP1	0	genome.wustl.edu	37	5	121355987	121355987	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	121355987	121355987	A	-	DEL	SRFBP1	ENST00000339397	human	ensembl	74_37	+1	known	frame_shift_del	c.557	p.I188fs	0.682	NULL	pfam_Bud-site_select_BUD22	-	no_errors	SRFBP1	HGNC	ENSG00000151304				55	0	0	24	15	38.4615
ZCCHC10	0	genome.wustl.edu	37	5	132335884	132335884	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	132335884	132335884	A	-	DEL	ZCCHC10	ENST00000513541	human	ensembl	74_37	-1	putative	frame_shift_del	c.279	p.P95fs	0.000	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC10	HGNC	ENSG00000155329				49	0	0	29	9	23.6842
CDC25C	0	genome.wustl.edu	37	5	137627690	137627690	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	137627690	137627690	T	-	DEL	CDC25C	ENST00000323760	human	ensembl	74_37	-1	known	frame_shift_del	c.731	p.K244fs	0.395	pfam_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25C	HGNC	ENSG00000158402				111	1	0.892857	59	19	24.359
WDR55	0	genome.wustl.edu	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140049102	140049102	A	-	DEL	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	1.000	pirsf_WD_repeat_p55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314				28	0	0	18	4	18.1818
HARS	0	genome.wustl.edu	37	5	140054656	140054658	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140054656	140054658	CTT	-	DEL	HARS	ENST00000504156	human	ensembl	74_37	-1	known	in_frame_del	c.1257_1255	p.K419in_frame_del	1.000:1.000:1.000	pfam_Anticodon-bd,superfamily_Anticodon-bd,pirsf_HisRS/HisZ,tigrfam_His-tRNA-ligase	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_His-tRNA-ligase	-	no_errors	HARS	HGNC	ENSG00000170445				71	0	0	40	7	14.8936
PCDHA4	0	genome.wustl.edu	37	5	140188275	140188276	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140188275	140188276	GC	-	DEL	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	frame_shift_del	c.1503_1504	p.L504fs	0.909:0.891	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				152	0	0	67	16	19.2771
PCDHB2	0	genome.wustl.edu	37	5	140474590	140474590	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140474590	140474590	A	-	DEL	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	frame_shift_del	c.216	p.M75fs	0.087	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				80	0	0	60	16	21.0526
PCDHB13	0	genome.wustl.edu	37	5	140594607	140594607	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	140594607	140594607	A	-	DEL	PCDHB13	ENST00000341948	human	ensembl	74_37	+1	known	frame_shift_del	c.912	p.K306fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372				122	0	0	52	22	29.7297
RBM27	0	genome.wustl.edu	37	5	145647320	145647320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	145647320	145647320	A	-	DEL	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	frame_shift_del	c.2440	p.K816fs	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				78	0	0	43	8	15.6863
SPINK5	0	genome.wustl.edu	37	5	147473960	147473960	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	147473960	147473960	T	-	DEL	SPINK5	ENST00000359874	human	ensembl	74_37	+1	known	frame_shift_del	c.710	p.C239fs	0.959	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK5	HGNC	ENSG00000133710				197	0	0	148	45	23.3161
PPARGC1B	0	genome.wustl.edu	37	5	149206386	149206386	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	149206386	149206386	C	-	DEL	PPARGC1B	ENST00000309241	human	ensembl	74_37	+1	known	frame_shift_del	c.403	p.S137fs	0.982	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846				129	0	0	85	27	24.1071
CSF1R	0	genome.wustl.edu	37	5	149449811	149449811	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	149449811	149449811	A	-	DEL	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	frame_shift_del	c.1253	p.L418fs	0.657	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578				74	0	0	37	6	13.9535
RBM22	0	genome.wustl.edu	37	5	150072459	150072459	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	150072459	150072459	G	-	DEL	RBM22	ENST00000199814	human	ensembl	74_37	-1	known	frame_shift_del	c.1130	p.P377fs	1.000	NULL	pfam_RRM_dom,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM22	HGNC	ENSG00000086589				173	0	0	125	24	16.1074
EBF1	0	genome.wustl.edu	37	5	158139202	158139202	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	158139202	158139202	G	-	DEL	EBF1	ENST00000313708	human	ensembl	74_37	-1	known	frame_shift_del	c.1509	p.T504fs	0.960	NULL	pfam_IPT,superfamily_Ig_E-set,superfamily_bHLH_dom,smart_IPT	-	no_errors	EBF1	HGNC	ENSG00000164330				32	0	0	20	3	13.0435
HMMR	0	genome.wustl.edu	37	5	162917426	162917426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	162917426	162917426	A	-	DEL	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	frame_shift_del	c.1993	p.K667fs	1.000	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571				76	0	0	38	12	24
RICTOR	0	genome.wustl.edu	37	5	38949500	38949500	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	38949500	38949500	C	-	DEL	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	frame_shift_del	c.4166	p.G1389fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				59	0	0	40	7	14.8936
OXCT1	0	genome.wustl.edu	37	5	41794812	41794812	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	41794812	41794812	A	-	DEL	OXCT1	ENST00000196371	human	ensembl	74_37	-1	known	frame_shift_del	c.1139	p.F380fs	1.000	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720				69	0	0	51	15	22.7273
CDC20B	0	genome.wustl.edu	37	5	54415630	54415630	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	54415630	54415630	A	-	DEL	CDC20B	ENST00000322374	human	ensembl	74_37	-1	known	frame_shift_del	c.1332	p.F444fs	0.968	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC20B	HGNC	ENSG00000164287				87	0	0	71	9	11.25
MARVELD2	0	genome.wustl.edu	37	5	68715357	68715357	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	68715357	68715357	C	-	DEL	MARVELD2	ENST00000325631	human	ensembl	74_37	+1	known	frame_shift_del	c.145	p.P50fs	1.000	NULL	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel	-	no_errors	MARVELD2	HGNC	ENSG00000152939				119	0	0	75	10	11.7647
BDP1	0	genome.wustl.edu	37	5	70766233	70766233	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	70766233	70766233	T	-	DEL	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	frame_shift_del	c.931	p.L313fs	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				58	0	0	25	7	21.875
FASTKD3	0	genome.wustl.edu	37	5	7867143	7867144	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	7867143	7867144	-	A	INS	FASTKD3	ENST00000264669	human	ensembl	74_37	-1	known	frame_shift_ins	c.1054_1053	p.T351fs	0.955:0.939	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD3	HGNC	ENSG00000124279				51	0	0	36	6	14.2857
PAPD4	0	genome.wustl.edu	37	5	78938656	78938657	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	78938656	78938657	-	T	INS	PAPD4	ENST00000296783	human	ensembl	74_37	+1	known	frame_shift_ins	c.674_675	p.Q228fs	0.846:0.988	NULL	pfam_PAP_assoc	-	no_errors	PAPD4	HGNC	ENSG00000164329				23	0	0	17	9	34.6154
RASA1	0	genome.wustl.edu	37	5	86672789	86672789	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	86672789	86672789	T	-	DEL	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	frame_shift_del	c.2276	p.L761fs	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				109	0	0	76	6	7.31707
RASA1	0	genome.wustl.edu	37	5	86675571	86675571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	5	86675571	86675571	A	-	DEL	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	frame_shift_del	c.2507	p.N838fs	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				51	0	0	44	6	12
GRIK2	0	genome.wustl.edu	37	6	102503432	102503432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	102503432	102503432	A	-	DEL	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	frame_shift_del	c.2539	p.N849fs	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				90	0	0	53	14	20.8955
ENSG00000271730	0	genome.wustl.edu	37	6	109319968	109319969	+	RNA	DEL	AA	AA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	109319968	109319969	AA	-	DEL	ENSG00000271730	ENST00000605885	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-787I22.3	Clone_based_vega_gene	ENSG00000271730				54	0	0	26	8	23.5294
MCM9	0	genome.wustl.edu	37	6	119245098	119245098	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	119245098	119245098	A	-	DEL	MCM9	ENST00000316316	human	ensembl	74_37	-1	known	frame_shift_del	c.499	p.C167fs	0.999	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,prints_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	-	no_errors	MCM9	HGNC	ENSG00000111877				124	0	0	85	26	23.4234
RNF217	0	genome.wustl.edu	37	6	125404041	125404042	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	125404041	125404042	-	A	INS	RNF217	ENST00000560949	human	ensembl	74_37	+1	known	frame_shift_ins	c.882_883	p.Q296fs	1.000:1.000	NULL	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373				27	0	0	30	12	28.5714
KIAA0408	0	genome.wustl.edu	37	6	127771251	127771252	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	127771251	127771252	-	T	INS	KIAA0408	ENST00000483725	human	ensembl	74_37	-1	novel	frame_shift_ins	c.382_381	p.S127fs	0.000:0.001	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367				125	0	0	56	24	30
PTPRK	0	genome.wustl.edu	37	6	128411121	128411122	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	128411121	128411122	-	G	INS	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	frame_shift_ins	c.1179_1178	p.T395fs	0.886:1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				79	0	0	52	10	16.129
AKAP7	0	genome.wustl.edu	37	6	131481276	131481276	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	131481276	131481276	A	-	DEL	AKAP7	ENST00000368123	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.K57fs	0.449	pfam_Kinase-A_anchor_nucl_local_sig	pfam_Kinase-A_anchor_nucl_local_sig,pfam_Kinase-A_anchor_RI-RII-bd_dom,superfamily_RNA_ligase/cNuc_Pdiesterase	-	no_errors	AKAP7	HGNC	ENSG00000118507				61	0	0	37	17	31.4815
HBS1L	0	genome.wustl.edu	37	6	135318639	135318639	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	135318639	135318639	G	-	DEL	HBS1L	ENST00000367837	human	ensembl	74_37	-1	known	frame_shift_del	c.695	p.P232fs	0.016	NULL	pfam_HBS1-like_N,pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom	-	no_errors	HBS1L	HGNC	ENSG00000112339				160	0	0	128	8	5.88235
IFNGR1	0	genome.wustl.edu	37	6	137519504	137519505	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	137519504	137519505	-	CT	INS	IFNGR1	ENST00000367739	human	ensembl	74_37	-1	known	frame_shift_ins	c.1134_1133	p.S378fs	0.036:0.000	NULL	pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu	-	no_errors	IFNGR1	HGNC	ENSG00000027697				121	0	0	96	20	17.2414
IFNGR1	0	genome.wustl.edu	37	6	137519505	137519506	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	137519505	137519506	CT	-	DEL	IFNGR1	ENST00000367739	human	ensembl	74_37	-1	known	frame_shift_del	c.1133_1132	p.S378fs	0.000:0.000	NULL	pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu	-	no_errors	IFNGR1	HGNC	ENSG00000027697				123	0	0	94	22	18.9655
SCAF8	0	genome.wustl.edu	37	6	155145472	155145472	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	155145472	155145472	T	-	DEL	SCAF8	ENST00000367186	human	ensembl	74_37	+1	known	frame_shift_del	c.2229	p.L745fs	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079				230	0	0	195	62	24.1245
ENSG00000235381	0	genome.wustl.edu	37	6	155575539	155575539	+	RNA	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	155575539	155575539	C	-	DEL	ENSG00000235381	ENST00000435295	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-477D19.2	Clone_based_vega_gene	ENSG00000235381				60	0	0	38	11	22.449
QKI	0	genome.wustl.edu	37	6	163899920	163899920	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	163899920	163899920	A	-	DEL	QKI	ENST00000361752	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.K134fs	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				58	0	0	57	12	17.3913
RBM24	0	genome.wustl.edu	37	6	17292449	17292450	+	RNA	DEL	AA	AA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	17292449	17292450	AA	-	DEL	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.915:0.719	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				20	0	0	8	10	55.5556
GPSM3	0	genome.wustl.edu	37	6	32159230	32159230	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	32159230	32159230	C	-	DEL	GPSM3	ENST00000375040	human	ensembl	74_37	-1	known	frame_shift_del	c.396	p.Q133fs	0.959	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	-	no_errors	GPSM3	HGNC	ENSG00000213654				136	0	0	61	11	15.2778
RPL10A	0	genome.wustl.edu	37	6	35437275	35437277	+	In_Frame_Del	DEL	CAA	CAA	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CAA	CAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	35437275	35437277	CAA	-	DEL	RPL10A	ENST00000322203	human	ensembl	74_37	+1	known	in_frame_del	c.279_281	p.N94in_frame_del	0.998:1.000:1.000	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like,pirsf_Ribosomal_L1	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like,pirsf_Ribosomal_L1	-	no_errors	RPL10A	HGNC	ENSG00000198755				35	0	0	21	8	27.5862
GLTSCR1L	0	genome.wustl.edu	37	6	42832627	42832627	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	42832627	42832627	A	-	DEL	GLTSCR1L	ENST00000314073	human	ensembl	74_37	+1	known	frame_shift_del	c.2683	p.T897fs	1.000	NULL	NULL	-	no_errors	GLTSCR1L	HGNC	ENSG00000112624				47	0	0	22	9	29.0323
PTK7	0	genome.wustl.edu	37	6	43097012	43097013	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	43097012	43097013	-	G	INS	PTK7	ENST00000476760	human	ensembl	74_37	+1	putative	frame_shift_ins	c.377_378	p.C129fs	0.000:0.592	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PTK7	HGNC	ENSG00000112655				40	0	0	14	3	17.6471
XPO5	0	genome.wustl.edu	37	6	43491633	43491634	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	43491633	43491634	-	C	INS	XPO5	ENST00000265351	human	ensembl	74_37	-1	known	frame_shift_ins	c.3588_3587	p.G1197fs	0.001:0.803	NULL	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571				153	0	0	72	27	27.2727
CDC5L	0	genome.wustl.edu	37	6	44371656	44371656	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	44371656	44371656	A	-	DEL	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	frame_shift_del	c.650	p.K219fs	1.000	NULL	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				69	0	0	24	9	27.2727
TDRD6	0	genome.wustl.edu	37	6	46659410	46659410	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	46659410	46659410	A	-	DEL	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	frame_shift_del	c.3545	p.N1184fs	0.004	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				38	0	0	23	10	30.303
CENPQ	0	genome.wustl.edu	37	6	49438701	49438702	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	49438701	49438702	-	A	INS	CENPQ	ENST00000335783	human	ensembl	74_37	+1	known	frame_shift_ins	c.117_118	p.N41fs	0.002:0.806	NULL	NULL	-	no_errors	CENPQ	HGNC	ENSG00000031691				72	0	0	25	3	10.7143
FAM135A	0	genome.wustl.edu	37	6	71185391	71185392	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	71185391	71185392	-	T	INS	FAM135A	ENST00000418814	human	ensembl	74_37	+1	known	frame_shift_ins	c.323_324	p.L110fs	0.999:1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269				69	0	0	32	11	25.5814
MDN1	0	genome.wustl.edu	37	6	90432675	90432675	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	90432675	90432675	T	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.5966	p.K1989fs	1.000	superfamily_P-loop_NTPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				184	1	0.540541	110	37	25.1701
CASP8AP2	0	genome.wustl.edu	37	6	90576391	90576391	+	RNA	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	6	90576391	90576391	A	-	DEL	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				14	0	0	15	3	16.6667
ZCWPW1	0	genome.wustl.edu	37	7	100017294	100017294	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	100017294	100017294	T	-	DEL	ZCWPW1	ENST00000398027	human	ensembl	74_37	-1	known	frame_shift_del	c.241	p.R81fs	0.014	NULL	pfam_Znf_CW,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487				61	0	0	43	6	12.2449
LRRC4	0	genome.wustl.edu	37	7	127670552	127670553	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	127670552	127670553	-	G	INS	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	frame_shift_ins	c.142_141	p.S47fs	0.999:0.994	smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				215	1	0.462963	88	21	19.2661
BRAF	0	genome.wustl.edu	37	7	140482927	140482927	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	140482927	140482927	G	-	DEL	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	frame_shift_del	c.1208	p.P403fs	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				50	0	0	31	7	18.4211
WEE2-AS1	0	genome.wustl.edu	37	7	141423729	141423729	+	RNA	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	141423729	141423729	T	-	DEL	WEE2-AS1	ENST00000459753	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	WEE2-AS1	HGNC	ENSG00000228775				28	0	0	9	5	35.7143
TMEM139	0	genome.wustl.edu	37	7	142983605	142983605	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	142983605	142983605	C	-	DEL	TMEM139	ENST00000359333	human	ensembl	74_37	+1	known	frame_shift_del	c.334	p.Y114fs	0.999	NULL	NULL	-	no_errors	TMEM139	HGNC	ENSG00000178826				193	0	0	127	34	21.118
ATG9B	0	genome.wustl.edu	37	7	150720307	150720307	+	RNA	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	150720307	150720307	G	-	DEL	ATG9B	ENST00000473698	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652				125	1	0.793651	120	21	14.8936
FKBP9	0	genome.wustl.edu	37	7	33014804	33014804	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	33014804	33014804	C	-	DEL	FKBP9	ENST00000538336	human	ensembl	74_37	+1	known	frame_shift_del	c.537	p.N182fs	0.998	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP9	HGNC	ENSG00000122642				119	0	0	75	10	11.7647
GLI3	0	genome.wustl.edu	37	7	42005573	42005573	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	42005573	42005573	G	-	DEL	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	frame_shift_del	c.3098	p.P1033fs	0.131	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				66	0	0	39	6	13.3333
HECW1	0	genome.wustl.edu	37	7	43590095	43590095	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	43590095	43590095	A	-	DEL	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	frame_shift_del	c.4300	p.N1435fs	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				54	0	0	34	8	19.0476
POLM	0	genome.wustl.edu	37	7	44120414	44120414	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	44120414	44120414	G	-	DEL	POLM	ENST00000242248	human	ensembl	74_37	-1	known	frame_shift_del	c.290	p.P97fs	0.047	superfamily_BRCT_dom,pirsf_TdT/Mu,pfscan_BRCT_dom	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	POLM	HGNC	ENSG00000122678				170	1	0.584795	95	14	12.844
SUN3	0	genome.wustl.edu	37	7	48048635	48048635	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	48048635	48048635	A	-	DEL	SUN3	ENST00000297325	human	ensembl	74_37	-1	known	frame_shift_del	c.326	p.L109fs	0.992	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN3	HGNC	ENSG00000164744				127	0	0	74	18	19.5652
C7orf63	0	genome.wustl.edu	37	7	89874708	89874708	+	RNA	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	89874708	89874708	C	-	DEL	C7orf63	ENST00000485791	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C7orf63	HGNC	ENSG00000105792				29	0	0	13	10	43.4783
CCDC132	0	genome.wustl.edu	37	7	92885827	92885827	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	7	92885827	92885827	A	-	DEL	CCDC132	ENST00000305866	human	ensembl	74_37	+1	known	frame_shift_del	c.304	p.V104fs	1.000	pfam_Vacuolar_sorting-assoc_54	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766				60	0	0	38	6	13.6364
RGS22	0	genome.wustl.edu	37	8	100990178	100990178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	100990178	100990178	T	-	DEL	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	frame_shift_del	c.3486	p.K1162fs	0.010	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				56	0	0	20	22	52.381
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				118	1	0.840336	77	17	18.0851
DCAF13	0	genome.wustl.edu	37	8	104439487	104439487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	104439487	104439487	T	-	DEL	DCAF13	ENST00000519682	human	ensembl	74_37	+1	putative	frame_shift_del	c.619	p.F209fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				31	0	0	23	3	11.5385
DEPTOR	0	genome.wustl.edu	37	8	121015322	121015322	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	121015322	121015322	C	-	DEL	DEPTOR	ENST00000286234	human	ensembl	74_37	+1	known	frame_shift_del	c.897	p.P301fs	1.000	NULL	pfam_DEP_dom,superfamily_PDZ,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ	-	no_errors	DEPTOR	HGNC	ENSG00000155792				60	0	0	40	7	14.8936
ZC3H3	0	genome.wustl.edu	37	8	144522386	144522387	+	In_Frame_Ins	INS	-	-	GAG			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	144522386	144522387	-	GAG	INS	ZC3H3	ENST00000262577	human	ensembl	74_37	-1	known	in_frame_ins	c.2640_2639	p.882in_frame_insS	0.000:0.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H3	HGNC	ENSG00000014164				11	0	0	11	7	38.8889
SLC52A2	0	genome.wustl.edu	37	8	145582874	145582875	+	RNA	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	145582874	145582875	-	A	INS	SLC52A2	ENST00000526891	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SLC52A2	HGNC	ENSG00000185803				43	0	0	12	5	29.4118
BMP1	0	genome.wustl.edu	37	8	22056713	22056714	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	22056713	22056714	-	C	INS	BMP1	ENST00000397816	human	ensembl	74_37	+1	known	frame_shift_ins	c.2286_2287	p.L764fs	0.998:0.998	pirsf_BMP_1/tolloid-like	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				159	0	0	106	24	18.4615
FZD3	0	genome.wustl.edu	37	8	28385159	28385159	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	28385159	28385159	T	-	DEL	FZD3	ENST00000240093	human	ensembl	74_37	+1	known	frame_shift_del	c.882	p.F296fs	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD3	HGNC	ENSG00000104290				97	0	0	59	12	16.9014
TEX15	0	genome.wustl.edu	37	8	30702947	30702947	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	30702947	30702947	A	-	DEL	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	frame_shift_del	c.3587	p.L1196fs	0.013	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				19	0	0	6	3	33.3333
GOT1L1	0	genome.wustl.edu	37	8	37791834	37791834	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	37791834	37791834	T	-	DEL	GOT1L1	ENST00000307599	human	ensembl	74_37	-1	known	frame_shift_del	c.1243	p.T415fs	0.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	-	no_errors	GOT1L1	HGNC	ENSG00000169154				89	0	0	55	16	22.5352
SFRP1	0	genome.wustl.edu	37	8	41164365	41164366	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	41164365	41164366	-	C	INS	SFRP1	ENST00000379845	human	ensembl	74_37	-1	putative	frame_shift_ins	c.12_11	p.N5fs	0.000:0.000	NULL	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	-	no_errors	SFRP1	HGNC	ENSG00000104332				37	0	0	15	5	25
ANK1	0	genome.wustl.edu	37	8	41573253	41573253	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	41573253	41573253	G	-	DEL	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	frame_shift_del	c.1519	p.L507fs	0.971	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				124	0	0	66	20	23.2558
SGK3	0	genome.wustl.edu	37	8	67716612	67716612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	67716612	67716612	A	-	DEL	SGK3	ENST00000345714	human	ensembl	74_37	+1	known	frame_shift_del	c.183	p.K63fs	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Phox,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	SGK3	HGNC	ENSG00000104205				66	0	0	26	10	27.7778
ARFGEF1	0	genome.wustl.edu	37	8	68140283	68140284	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	68140283	68140284	-	T	INS	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	frame_shift_ins	c.3506_3505	p.I1169fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				35	0	0	29	7	19.4444
PREX2	0	genome.wustl.edu	37	8	68965390	68965390	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	68965390	68965390	A	-	DEL	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	frame_shift_del	c.1002	p.N336fs	0.998	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				62	0	0	56	19	25.3333
EYA1	0	genome.wustl.edu	37	8	72123392	72123392	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	72123392	72123392	T	-	DEL	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	frame_shift_del	c.1697	p.K566fs	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				88	0	0	68	16	19.0476
ENSG00000253553	0	genome.wustl.edu	37	8	89339273	89339273	+	RNA	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	89339273	89339273	G	-	DEL	ENSG00000253553	ENST00000523254	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	RP11-586K2.1	Clone_based_vega_gene	ENSG00000253553				73	0	0	37	13	26
TNKS	0	genome.wustl.edu	37	8	9609231	9609231	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	8	9609231	9609231	C	-	DEL	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	frame_shift_del	c.2945	p.S984fs	1.000	NULL	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				328	0	0	214	42	16.4062
TGFBR1	0	genome.wustl.edu	37	9	101907165	101907165	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	101907165	101907165	A	-	DEL	TGFBR1	ENST00000374994	human	ensembl	74_37	+1	known	frame_shift_del	c.1125	p.R377fs	0.992	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TGFBR1	HGNC	ENSG00000106799				60	0	0	49	17	25.7576
SMC2	0	genome.wustl.edu	37	9	106878505	106878506	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	106878505	106878506	-	G	INS	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	frame_shift_ins	c.1696_1697	p.E568fs	1.000:0.995	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				91	0	0	64	15	18.9873
TXNDC8	0	genome.wustl.edu	37	9	113091539	113091539	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	113091539	113091539	A	-	DEL	TXNDC8	ENST00000374511	human	ensembl	74_37	-1	known	frame_shift_del	c.162	p.F54fs	0.993	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC8	HGNC	ENSG00000204193				63	0	0	47	3	6
SVEP1	0	genome.wustl.edu	37	9	113171074	113171074	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	113171074	113171074	G	-	DEL	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	frame_shift_del	c.6806	p.P2269fs	0.026	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				181	0	0	156	25	13.8122
RABGAP1	0	genome.wustl.edu	37	9	125746957	125746957	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	125746957	125746957	A	-	DEL	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	frame_shift_del	c.344	p.K116fs	0.972	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				54	0	0	25	6	19.3548
CRB2	0	genome.wustl.edu	37	9	126129551	126129552	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	126129551	126129552	-	G	INS	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	frame_shift_ins	c.855_856	p.V287fs	0.780:0.859	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204				55	0	0	17	7	29.1667
C9orf114	0	genome.wustl.edu	37	9	131591120	131591120	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	131591120	131591120	T	-	DEL	C9orf114	ENST00000361256	human	ensembl	74_37	-1	known	frame_shift_del	c.102	p.K34fs	0.998	NULL	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold	-	no_errors	C9orf114	HGNC	ENSG00000198917				123	1	0.806452	68	25	26.8817
NUP214	0	genome.wustl.edu	37	9	134072669	134072671	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	134072669	134072671	CTT	-	DEL	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	in_frame_del	c.3791_3793	p.S1265in_frame_del	0.972:0.900:0.892	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				99	0	0	47	16	25.3968
CEL	0	genome.wustl.edu	37	9	135946570	135946570	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	135946570	135946570	C	-	DEL	CEL	ENST00000372080	human	ensembl	74_37	+1	known	frame_shift_del	c.1690	p.T566fs	0.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835				22	0	0	13	4	23.5294
LINC00094	0	genome.wustl.edu	37	9	136899776	136899776	+	RNA	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	136899776	136899776	C	-	DEL	LINC00094	ENST00000605164	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00094	HGNC	ENSG00000235106				21	0	0	7	6	46.1538
NPDC1	0	genome.wustl.edu	37	9	139935411	139935411	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	139935411	139935411	C	-	DEL	NPDC1	ENST00000371600	human	ensembl	74_37	-1	known	frame_shift_del	c.645	p.Q216fs	0.000	pfam_NPDC1	pfam_NPDC1	-	no_errors	NPDC1	HGNC	ENSG00000107281				29	0	0	36	7	16.2791
AQP7	0	genome.wustl.edu	37	9	33385690	33385690	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	33385690	33385690	G	-	DEL	AQP7	ENST00000297988	human	ensembl	74_37	-1	known	frame_shift_del	c.700	p.R234fs	0.779	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_MIP	-	no_errors	AQP7	HGNC	ENSG00000165269				246	0	0	180	21	10.4478
DCTN3	0	genome.wustl.edu	37	9	34618718	34618719	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	34618718	34618719	-	C	INS	DCTN3	ENST00000259632	human	ensembl	74_37	-1	known	frame_shift_ins	c.136_135	p.N45fs	1.000:1.000	pfam_Dynactin_p22	pfam_Dynactin_p22	-	no_errors	DCTN3	HGNC	ENSG00000137100				119	0	0	84	16	16
PTCH1	0	genome.wustl.edu	37	9	98209593	98209593	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	9	98209593	98209593	G	-	DEL	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	frame_shift_del	c.3945	p.Y1316fs	1.000	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				124	0	0	58	11	15.942
MT-ND5	0	genome.wustl.edu	37	MT	12417	12418	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	MT	12417	12418	-	A	INS	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	frame_shift_ins	c.81_82	p.N29fs	NULL	tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786				12	0	0	4	8	66.6667
HNRNPH2	0	genome.wustl.edu	37	X	100667857	100667857	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	100667857	100667857	G	-	DEL	HNRNPH2	ENST00000316594	human	ensembl	74_37	+1	known	frame_shift_del	c.881	p.L296fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH2	HGNC	ENSG00000126945				75	0	0	27	16	37.2093
BCORL1	0	genome.wustl.edu	37	X	129190011	129190011	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	129190011	129190011	C	-	DEL	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	frame_shift_del	c.5258	p.P1755fs	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				49	0	0	10	18	64.2857
FAM47C	0	genome.wustl.edu	37	X	37028265	37028265	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	37028265	37028265	C	-	DEL	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	frame_shift_del	c.1782	p.P596fs	0.005	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				96	0	0	48	21	30.4348
OTUD5	0	genome.wustl.edu	37	X	48780975	48780976	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	48780975	48780976	-	G	INS	OTUD5	ENST00000156084	human	ensembl	74_37	-1	known	frame_shift_ins	c.1529_1528	p.L510fs	0.980:0.982	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD5	HGNC	ENSG00000068308				24	0	0	7	3	30
CACNA1F	0	genome.wustl.edu	37	X	49066409	49066409	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	49066409	49066409	G	-	DEL	CACNA1F	ENST00000376265	human	ensembl	74_37	-1	known	frame_shift_del	c.4715	p.P1572fs	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001				87	0	0	23	35	60.3448
TAF1	0	genome.wustl.edu	37	X	70680578	70680578	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	X	70680578	70680578	A	-	DEL	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	frame_shift_del	c.5423	p.N1809fs	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				16	0	0	2	6	75
UTY	0	genome.wustl.edu	37	Y	15411007	15411007	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7851-01A-11D-2201-08	TCGA-BR-7851-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f92f7feb-3623-4ccd-8cc1-e27f757f9b21	8c961372-743b-47d3-9bdf-0c75927bc4bb	Y	15411007	15411007	A	-	DEL	UTY	ENST00000382896	human	ensembl	74_37	-1	known	frame_shift_del	c.3542	p.L1181fs	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TPR_1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UTY	HGNC	ENSG00000183878				22	0	0	10	9	47.3684
