Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PEX14	0	genome.wustl.edu	37	1	10687392	10687392	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	10687392	10687392	A	G	SNP	PEX14	ENST00000356607	human	ensembl	74_37	+1	known	missense	c.649	p.N217D	0.997	NULL	pfam_Pex14_N	-	no_errors	PEX14	HGNC	ENSG00000142655				84	0	0	60	36	37.5
ADORA3	0	genome.wustl.edu	37	1	112045631	112045631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	112045631	112045631	C	T	SNP	ADORA3	ENST00000369716	human	ensembl	74_37	-1	known	missense	c.346	p.V116I	0.296	pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Adeno_A3_rcpt,prints_GPCR_Rhodpsn	-	no_errors	ADORA3	HGNC	ENSG00000121933				47	0	0	30	7	18.9189
HRNR	0	genome.wustl.edu	37	1	152185618	152185618	+	Silent	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	152185618	152185618	G	C	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.8487	p.L2829	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				63	0	0	92	6	6.12245
HRNR	0	genome.wustl.edu	37	1	152185707	152185707	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	152185707	152185707	G	C	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.8398	p.Q2800E	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				165	0	0	214	23	9.70464
HRNR	0	genome.wustl.edu	37	1	152185775	152185775	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	152185775	152185775	G	C	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.8330	p.S2777C	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				109	0	0	197	17	7.94393
FLG	0	genome.wustl.edu	37	1	152286772	152286772	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	152286772	152286772	C	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.590	p.R197M	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				53	0	0	113	6	5.04202
FLG2	0	genome.wustl.edu	37	1	152330090	152330090	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	152330090	152330090	T	C	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.172	p.M58V	1.000	pfscan_EF_hand_dom	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				77	0	0	86	6	6.52174
LCE2B	0	genome.wustl.edu	37	1	152659558	152659558	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	152659558	152659558	T	C	SNP	LCE2B	ENST00000368780	human	ensembl	74_37	+1	known	missense	c.239	p.L80P	0.000	NULL	NULL	-	no_errors	LCE2B	HGNC	ENSG00000159455				131	0	0	151	8	5.03145
KPRP	0	genome.wustl.edu	37	1	152732493	152732493	+	Silent	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	152732493	152732493	T	G	SNP	KPRP	ENST00000368773	human	ensembl	74_37	+1	known	silent	c.429	p.T143	0.000	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786				154	0	0	170	37	17.8744
SPRR3	0	genome.wustl.edu	37	1	152975747	152975747	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	152975747	152975747	A	C	SNP	SPRR3	ENST00000295367	human	ensembl	74_37	+1	known	missense	c.251	p.K84T	0.000	pfam_Cornifin	pfam_Cornifin	-	no_errors	SPRR3	HGNC	ENSG00000163209				55	0	0	59	5	7.8125
OR10K2	0	genome.wustl.edu	37	1	158390620	158390620	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	158390620	158390620	T	A	SNP	OR10K2	ENST00000314902	human	ensembl	74_37	-1	known	missense	c.37	p.I13F	0.704	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10K2	HGNC	ENSG00000180708				55	0	0	56	4	6.66667
OR10K1	0	genome.wustl.edu	37	1	158435654	158435654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	158435654	158435654	G	A	SNP	OR10K1	ENST00000289451	human	ensembl	74_37	+1	known	missense	c.303	p.M101I	0.971	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285				157	0	0	162	10	5.81395
SPTA1	0	genome.wustl.edu	37	1	158639573	158639573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	158639573	158639573	C	T	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.1603	p.V535I	0.959	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				143	0	0	166	19	10.2703
SPEN	0	genome.wustl.edu	37	1	16248837	16248837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	16248837	16248837	G	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.1843	p.E615K	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				45	0	0	65	5	7.14286
LMX1A	0	genome.wustl.edu	37	1	165175151	165175151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	165175151	165175151	C	T	SNP	LMX1A	ENST00000294816	human	ensembl	74_37	-1	known	missense	c.938	p.R313Q	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1A	HGNC	ENSG00000162761				83	0	0	83	18	17.8218
TPR	0	genome.wustl.edu	37	1	186324590	186324590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	186324590	186324590	C	T	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.2123	p.R708Q	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				50	0	0	51	6	10.5263
CFHR3	0	genome.wustl.edu	37	1	196748352	196748352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	196748352	196748352	G	A	SNP	CFHR3	ENST00000367425	human	ensembl	74_37	+1	known	missense	c.119	p.R40K	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR3	HGNC	ENSG00000116785				75	0	0	67	10	12.987
CFHR3	0	genome.wustl.edu	37	1	196749078	196749078	+	Silent	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	196749078	196749078	T	C	SNP	CFHR3	ENST00000367425	human	ensembl	74_37	+1	known	silent	c.405	p.S135	0.035	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR3	HGNC	ENSG00000116785				103	0	0	83	6	6.74157
PTPRC	0	genome.wustl.edu	37	1	198711490	198711490	+	Silent	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	198711490	198711490	A	G	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	silent	c.2691	p.Q897	1.000	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				87	0	0	104	12	10.3448
INTS7	0	genome.wustl.edu	37	1	212156066	212156066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	212156066	212156066	G	A	SNP	INTS7	ENST00000440600	human	ensembl	74_37	-1	known	missense	c.937	p.H313Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	INTS7	HGNC	ENSG00000143493				112	0	0	96	16	14.2857
RAP1GAP	0	genome.wustl.edu	37	1	21929359	21929359	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	21929359	21929359	C	T	SNP	RAP1GAP	ENST00000290101	human	ensembl	74_37	-1	known	silent	c.1668	p.P556	0.003	NULL	pfam_Rap_GAP_dom,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP	HGNC	ENSG00000076864				64	0	0	57	19	25
ACTN2	0	genome.wustl.edu	37	1	236914822	236914822	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	236914822	236914822	G	C	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.1709	p.G570A	0.078	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				85	0	0	65	8	10.9589
RYR2	0	genome.wustl.edu	37	1	237617865	237617865	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	237617865	237617865	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	silent	c.1461	p.F487	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				22	0	0	11	5	31.25
RYR2	0	genome.wustl.edu	37	1	237675029	237675029	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	237675029	237675029	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	silent	c.2754	p.E918	0.997	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				12	0	0	2	6	75
OR2T6	0	genome.wustl.edu	37	1	248551074	248551074	+	Silent	SNP	C	C	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	248551074	248551074	C	A	SNP	OR2T6	ENST00000355728	human	ensembl	74_37	+1	known	silent	c.165	p.L55	0.987	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2T6	HGNC	ENSG00000198104				73	0	0	29	33	53.2258
OR2T10	0	genome.wustl.edu	37	1	248756332	248756332	+	Silent	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	248756332	248756332	T	A	SNP	OR2T10	ENST00000330500	human	ensembl	74_37	-1	known	silent	c.738	p.T246	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T10	HGNC	ENSG00000184022				43	0	0	48	9	15.7895
SZT2	0	genome.wustl.edu	37	1	43908169	43908169	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	43908169	43908169	G	A	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	silent	c.7860	p.A2620	0.051	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				66	0	0	44	7	13.7255
AJAP1	0	genome.wustl.edu	37	1	4832465	4832465	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	4832465	4832465	C	A	SNP	AJAP1	ENST00000378190	human	ensembl	74_37	+1	known	missense	c.1043	p.T348K	1.000	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581				64	0	0	38	3	7.31707
PER3	0	genome.wustl.edu	37	1	7879395	7879395	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	7879395	7879395	G	T	SNP	PER3	ENST00000361923	human	ensembl	74_37	+1	known	missense	c.1549	p.V517L	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246				107	0	0	144	10	6.49351
GBP7	0	genome.wustl.edu	37	1	89617985	89617985	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	89617985	89617985	A	T	SNP	GBP7	ENST00000294671	human	ensembl	74_37	-1	known	missense	c.591	p.D197E	0.994	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP7	HGNC	ENSG00000213512				140	0	0	94	6	6
DPYD	0	genome.wustl.edu	37	1	97915676	97915676	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	1	97915676	97915676	T	G	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	missense	c.1844	p.E615A	1.000	pfam_Dihydroorotate_DH_1_2,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				96	0	0	71	7	8.97436
PDCD11	0	genome.wustl.edu	37	10	105199528	105199528	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	10	105199528	105199528	G	C	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	missense	c.4051	p.A1351P	0.738	superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				183	0	0	134	11	7.58621
CALHM1	0	genome.wustl.edu	37	10	105215108	105215108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	10	105215108	105215108	C	T	SNP	CALHM1	ENST00000329905	human	ensembl	74_37	-1	known	missense	c.952	p.E318K	0.996	NULL	NULL	-	no_errors	CALHM1	HGNC	ENSG00000185933				43	0	0	27	3	10
SORCS3	0	genome.wustl.edu	37	10	106401694	106401694	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	10	106401694	106401694	G	C	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.609	p.W203C	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				25	0	0	19	3	13.6364
DCLRE1A	0	genome.wustl.edu	37	10	115605541	115605541	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	10	115605541	115605541	T	A	SNP	DCLRE1A	ENST00000361384	human	ensembl	74_37	-1	known	missense	c.2281	p.N761Y	1.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924				98	0	0	74	28	27.451
TCERG1L	0	genome.wustl.edu	37	10	133107428	133107428	+	Silent	SNP	A	A	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	10	133107428	133107428	A	T	SNP	TCERG1L	ENST00000368642	human	ensembl	74_37	-1	known	silent	c.477	p.I159	0.182	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1L	HGNC	ENSG00000176769				58	0	0	28	5	15.1515
GPR123	0	genome.wustl.edu	37	10	134906618	134906618	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	10	134906618	134906618	T	C	SNP	GPR123	ENST00000607359	human	ensembl	74_37	+1	putative	missense	c.1889	p.L630P	0.002	NULL	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177				25	0	0	17	3	15
CUBN	0	genome.wustl.edu	37	10	16932369	16932369	+	Splice_Site	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	10	16932369	16932369	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	splice_site	c.8755+1	e55+1	1.000	-	-	-	no_errors	CUBN	HGNC	ENSG00000107611				51	0	0	34	3	8.10811
ZNF248	0	genome.wustl.edu	37	10	38121107	38121107	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	10	38121107	38121107	C	T	SNP	ZNF248	ENST00000357328	human	ensembl	74_37	-1	known	silent	c.1176	p.K392	0.972	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105				99	0	0	88	10	10.2041
DNTT	0	genome.wustl.edu	37	10	98087281	98087281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	10	98087281	98087281	G	A	SNP	DNTT	ENST00000371174	human	ensembl	74_37	+1	known	missense	c.931	p.V311I	0.062	smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447				235	1	0.423729	184	19	9.35961
ANGPTL5	0	genome.wustl.edu	37	11	101775550	101775550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	101775550	101775550	G	A	SNP	ANGPTL5	ENST00000334289	human	ensembl	74_37	-1	known	missense	c.434	p.S145L	1.000	superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL5	HGNC	ENSG00000187151				63	0	0	59	6	9.23077
DYNC2H1	0	genome.wustl.edu	37	11	103152957	103152957	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	103152957	103152957	C	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.10832	p.A3611V	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				40	0	0	33	4	10.8108
TTC12	0	genome.wustl.edu	37	11	113235630	113235630	+	Silent	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	113235630	113235630	T	G	SNP	TTC12	ENST00000314756	human	ensembl	74_37	+1	known	silent	c.1890	p.G630	0.960	superfamily_ARM-type_fold	pfam_TPR_1,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC12	HGNC	ENSG00000149292				98	0	0	82	7	7.86517
ARHGEF12	0	genome.wustl.edu	37	11	120348905	120348905	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	120348905	120348905	A	C	SNP	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	missense	c.3516	p.K1172N	0.972	NULL	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914				53	0	0	56	13	18.8406
NELL1	0	genome.wustl.edu	37	11	20948910	20948910	+	Silent	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	20948910	20948910	T	G	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	silent	c.816	p.T272	1.000	pfscan_VWF_C	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973				74	0	0	54	4	6.89655
NELL1	0	genome.wustl.edu	37	11	20959356	20959356	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	20959356	20959356	T	G	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	missense	c.1022	p.V341G	1.000	smart_VWF_C	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973				84	0	0	59	5	7.8125
LRRC4C	0	genome.wustl.edu	37	11	40136487	40136487	+	Silent	SNP	A	A	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	40136487	40136487	A	T	SNP	LRRC4C	ENST00000527150	human	ensembl	74_37	-1	known	silent	c.1356	p.S452	0.464	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	LRRC4C	HGNC	ENSG00000148948				113	0	0	109	9	7.62712
OR4A47	0	genome.wustl.edu	37	11	48511093	48511093	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	48511093	48511093	T	A	SNP	OR4A47	ENST00000446524	human	ensembl	74_37	+1	known	missense	c.749	p.V250D	0.901	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A47	HGNC	ENSG00000237388				155	0	0	153	14	8.38323
OR51L1	0	genome.wustl.edu	37	11	5020810	5020810	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	5020810	5020810	T	C	SNP	OR51L1	ENST00000321543	human	ensembl	74_37	+1	known	missense	c.598	p.Y200H	0.923	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51L1	HGNC	ENSG00000176798				78	0	0	56	9	13.8462
OR8H3	0	genome.wustl.edu	37	11	55890577	55890577	+	Silent	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	55890577	55890577	T	A	SNP	OR8H3	ENST00000313472	human	ensembl	74_37	+1	known	silent	c.729	p.S243	0.565	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H3	HGNC	ENSG00000181761				63	0	0	48	5	9.43396
OR8J1	0	genome.wustl.edu	37	11	56127847	56127847	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	56127847	56127847	A	G	SNP	OR8J1	ENST00000303039	human	ensembl	74_37	+1	known	missense	c.125	p.N42S	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J1	HGNC	ENSG00000172487				120	0	0	111	7	5.9322
CLP1	0	genome.wustl.edu	37	11	57427134	57427134	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	57427134	57427134	G	A	SNP	CLP1	ENST00000525602	human	ensembl	74_37	+1	known	silent	c.186	p.K62	1.000	NULL	pfam_Pre-mRNA_cleavage_cplxII_Clp1,superfamily_P-loop_NTPase	-	no_errors	CLP1	HGNC	ENSG00000172409				53	0	0	49	3	5.76923
RBM4	0	genome.wustl.edu	37	11	66411193	66411193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	66411193	66411193	C	T	SNP	RBM4	ENST00000310092	human	ensembl	74_37	+1	known	missense	c.685	p.R229W	1.000	NULL	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4	HGNC	ENSG00000173933				53	0	0	40	21	34.4262
OR10A5	0	genome.wustl.edu	37	11	6867680	6867680	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	6867680	6867680	C	G	SNP	OR10A5	ENST00000379831	human	ensembl	74_37	+1	known	missense	c.779	p.S260C	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A5	HGNC	ENSG00000166363				167	0	0	157	9	5.42169
OR10A5	0	genome.wustl.edu	37	11	6867694	6867694	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	6867694	6867694	T	G	SNP	OR10A5	ENST00000379831	human	ensembl	74_37	+1	known	missense	c.793	p.F265V	0.010	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A5	HGNC	ENSG00000166363				169	0	0	158	10	5.95238
P2RY6	0	genome.wustl.edu	37	11	73008014	73008014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	73008014	73008014	G	A	SNP	P2RY6	ENST00000349767	human	ensembl	74_37	+1	known	missense	c.451	p.V151M	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y6_rcpt,prints_GPCR_Rhodpsn,prints_P2Y3_rcpt,prints_Protea_act_rcpt	-	no_errors	P2RY6	HGNC	ENSG00000171631				60	0	0	58	7	10.7692
C2CD3	0	genome.wustl.edu	37	11	73844002	73844002	+	Silent	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	73844002	73844002	A	G	SNP	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	silent	c.1104	p.S368	0.006	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				60	0	0	43	15	25.8621
OVCH2	0	genome.wustl.edu	37	11	7718031	7718031	+	Silent	SNP	A	A	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	7718031	7718031	A	T	SNP	OVCH2	ENST00000454689	human	ensembl	74_37	-1	known	silent	c.1122	p.S374	0.996	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH2	HGNC	ENSG00000183378				44	0	0	42	4	8.69565
HEPHL1	0	genome.wustl.edu	37	11	93808527	93808527	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	11	93808527	93808527	C	T	SNP	HEPHL1	ENST00000315765	human	ensembl	74_37	+1	known	silent	c.1692	p.G564	0.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333				52	0	0	48	4	7.69231
CHPT1	0	genome.wustl.edu	37	12	102117024	102117024	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	12	102117024	102117024	A	G	SNP	CHPT1	ENST00000229266	human	ensembl	74_37	+1	known	missense	c.859	p.T287A	1.000	pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666				65	0	0	35	14	28.5714
NUAK1	0	genome.wustl.edu	37	12	106464550	106464550	+	Splice_Site	SNP	A	A	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	12	106464550	106464550	A	C	SNP	NUAK1	ENST00000261402	human	ensembl	74_37	-1	known	splice_site	c.832+2	e6+2	1.000	-	-	-	no_errors	NUAK1	HGNC	ENSG00000074590				114	0	0	91	9	9
TMEM132D	0	genome.wustl.edu	37	12	129822217	129822217	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	12	129822217	129822217	T	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.1261	p.S421C	1.000	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				211	0	0	167	17	9.23913
CASC1	0	genome.wustl.edu	37	12	25261681	25261681	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	12	25261681	25261681	T	C	SNP	CASC1	ENST00000395987	human	ensembl	74_37	-1	known	missense	c.1970	p.Q657R	0.995	prints_Casc1	pfam_Casc1_domain,prints_Casc1	-	no_errors	CASC1	HGNC	ENSG00000118307				47	0	0	60	13	17.8082
SMARCC2	0	genome.wustl.edu	37	12	56568472	56568472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	12	56568472	56568472	G	A	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	missense	c.1459	p.R487C	1.000	pfam_SWIRM,superfamily_Homeodomain-like,superfamily_Chromodomain-like,pfscan_SWIRM	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				136	0	0	117	7	5.64516
CD4	0	genome.wustl.edu	37	12	6924049	6924049	+	Silent	SNP	G	G	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	12	6924049	6924049	G	T	SNP	CD4	ENST00000011653	human	ensembl	74_37	+1	known	silent	c.498	p.G166	0.000	pfam_Ig_C2-set,smart_Ig_sub,smart_Ig_sub2	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610				70	0	0	76	4	5
LRRC10	0	genome.wustl.edu	37	12	70003953	70003953	+	Silent	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	12	70003953	70003953	A	G	SNP	LRRC10	ENST00000361484	human	ensembl	74_37	-1	known	silent	c.666	p.N222	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC10	HGNC	ENSG00000198812				56	0	0	35	5	12.5
NAV3	0	genome.wustl.edu	37	12	78604244	78604244	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	12	78604244	78604244	A	G	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.7105	p.S2369G	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				47	0	0	33	3	8.33333
IFT88	0	genome.wustl.edu	37	13	21205209	21205209	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	13	21205209	21205209	G	C	SNP	IFT88	ENST00000319980	human	ensembl	74_37	+1	known	missense	c.1381	p.A461P	1.000	smart_TPR_repeat,smart_Sel1-like,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFT88	HGNC	ENSG00000032742				99	0	0	91	7	7.14286
TRPC4	0	genome.wustl.edu	37	13	38211114	38211114	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	13	38211114	38211114	C	A	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	missense	c.2875	p.D959Y	0.967	NULL	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107				71	0	0	79	9	10.2273
TRPC4	0	genome.wustl.edu	37	13	38211582	38211582	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	13	38211582	38211582	C	T	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	missense	c.2407	p.D803N	1.000	prints_TRPC4_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107				69	0	0	71	8	10.1266
ENOX1	0	genome.wustl.edu	37	13	43896599	43896599	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	13	43896599	43896599	G	A	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	silent	c.1182	p.I394	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658				77	0	0	40	11	21.5686
PCDH17	0	genome.wustl.edu	37	13	58298909	58298909	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	13	58298909	58298909	C	T	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.2961	p.Y987	0.967	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				62	0	0	52	3	5.45455
TDRD3	0	genome.wustl.edu	37	13	61084866	61084866	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	13	61084866	61084866	A	T	SNP	TDRD3	ENST00000535286	human	ensembl	74_37	+1	known	missense	c.1118	p.K373I	1.000	NULL	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544				93	0	0	51	4	7.27273
DACH1	0	genome.wustl.edu	37	13	72440223	72440223	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	13	72440223	72440223	G	A	SNP	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	missense	c.685	p.H229Y	1.000	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659				120	1	0.826446	78	8	9.30233
EDNRB	0	genome.wustl.edu	37	13	78477411	78477411	+	Silent	SNP	C	C	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	13	78477411	78477411	C	A	SNP	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	silent	c.681	p.V227	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				191	0	0	128	13	9.21986
SLITRK1	0	genome.wustl.edu	37	13	84454439	84454439	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	13	84454439	84454439	T	G	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.1204	p.I402L	0.994	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				318	1	0.31348	215	19	8.11966
INF2	0	genome.wustl.edu	37	14	105180624	105180624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	14	105180624	105180624	G	A	SNP	INF2	ENST00000392634	human	ensembl	74_37	+1	known	missense	c.3125	p.S1042N	0.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_WH2_dom,superfamily_ARM-type_fold,smart_FH2_Formin,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485				11	0	0	2	2	50
NPAS3	0	genome.wustl.edu	37	14	34269031	34269031	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	14	34269031	34269031	G	A	SNP	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	silent	c.1518	p.A506	0.972	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322				30	0	0	28	3	9.67742
KTN1	0	genome.wustl.edu	37	14	56107659	56107659	+	Silent	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	14	56107659	56107659	T	A	SNP	KTN1	ENST00000395309	human	ensembl	74_37	+1	known	silent	c.1992	p.A664	0.996	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777				51	0	0	56	6	9.67742
ATP6V1D	0	genome.wustl.edu	37	14	67826414	67826414	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	14	67826414	67826414	A	T	SNP	ATP6V1D	ENST00000216442	human	ensembl	74_37	-1	known	missense	c.2	p.M1K	1.000	NULL	pfam_V_ATPase_D,tigrfam_V_ATPase_D	-	no_errors	ATP6V1D	HGNC	ENSG00000100554				45	0	0	47	6	11.3208
DPF3	0	genome.wustl.edu	37	14	73140966	73140966	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	14	73140966	73140966	C	T	SNP	DPF3	ENST00000366353	human	ensembl	74_37	-1	known	missense	c.1018	p.A340T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DPF3	HGNC	ENSG00000205683				24	0	0	8	4	33.3333
BCL11B	0	genome.wustl.edu	37	14	99640530	99640530	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	14	99640530	99640530	C	T	SNP	BCL11B	ENST00000357195	human	ensembl	74_37	-1	known	silent	c.2643	p.L881	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11B	HGNC	ENSG00000127152				67	0	0	40	3	6.97674
MAP1A	0	genome.wustl.edu	37	15	43817620	43817620	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	15	43817620	43817620	C	G	SNP	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	missense	c.3949	p.L1317V	0.981	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				71	0	0	38	9	19.1489
RFX7	0	genome.wustl.edu	37	15	56387980	56387980	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	15	56387980	56387980	G	C	SNP	RFX7	ENST00000423270	human	ensembl	74_37	-1	known	missense	c.1946	p.P649R	0.040	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827				65	0	0	37	8	17.7778
TLN2	0	genome.wustl.edu	37	15	63089448	63089448	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	15	63089448	63089448	G	A	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	silent	c.6081	p.L2027	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				99	0	0	55	16	22.5352
MYO9A	0	genome.wustl.edu	37	15	72302748	72302748	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	15	72302748	72302748	A	C	SNP	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	missense	c.1196	p.F399C	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933				92	0	0	58	18	23.6842
TPSG1	0	genome.wustl.edu	37	16	1272743	1272743	+	Silent	SNP	C	C	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	16	1272743	1272743	C	G	SNP	TPSG1	ENST00000234798	human	ensembl	74_37	-1	known	silent	c.420	p.R140	0.103	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TPSG1	HGNC	ENSG00000116176				54	0	0	44	4	8.33333
ACSM2A	0	genome.wustl.edu	37	16	20497938	20497938	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	16	20497938	20497938	A	C	SNP	ACSM2A	ENST00000219054	human	ensembl	74_37	+1	known	missense	c.1672	p.I558L	0.999	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747				232	0	0	182	11	5.69948
ITGAM	0	genome.wustl.edu	37	16	31332822	31332822	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	16	31332822	31332822	T	G	SNP	ITGAM	ENST00000544665	human	ensembl	74_37	+1	known	missense	c.1879	p.F627V	0.489	pfam_Integrin_alpha-2,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896				339	0	0	294	20	6.36943
ENSG00000261727	0	genome.wustl.edu	37	16	32095637	32095637	+	RNA	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	16	32095637	32095637	G	C	SNP	ENSG00000261727	ENST00000566806	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-1166P10.6	Clone_based_vega_gene	ENSG00000261727				31	0	0	19	7	26.9231
C16orf71	0	genome.wustl.edu	37	16	4790653	4790653	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	16	4790653	4790653	C	T	SNP	C16orf71	ENST00000299320	human	ensembl	74_37	+1	known	missense	c.776	p.S259L	0.930	NULL	NULL	-	no_errors	C16orf71	HGNC	ENSG00000166246				54	0	0	37	5	11.9048
PSKH1	0	genome.wustl.edu	37	16	67943234	67943234	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	16	67943234	67943234	C	T	SNP	PSKH1	ENST00000291041	human	ensembl	74_37	+1	known	silent	c.582	p.D194	0.915	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PSKH1	HGNC	ENSG00000159792				39	0	0	23	3	11.5385
KARS	0	genome.wustl.edu	37	16	75662592	75662592	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	16	75662592	75662592	C	T	SNP	KARS	ENST00000319410	human	ensembl	74_37	-1	known	missense	c.1654	p.D552N	1.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Lys-tRNA-ligase_II	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Lys-tRNA-synth_II_C,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Lys-tRNA-ligase_II	-	no_errors	KARS	HGNC	ENSG00000065427				49	0	0	50	4	7.40741
DNAH9	0	genome.wustl.edu	37	17	11684386	11684386	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	17	11684386	11684386	A	G	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.7613	p.K2538R	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				42	0	0	27	4	12.9032
SLC43A2	0	genome.wustl.edu	37	17	1489235	1489235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	17	1489235	1489235	C	T	SNP	SLC43A2	ENST00000382147	human	ensembl	74_37	-1	known	missense	c.1201	p.E401K	0.998	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A2	HGNC	ENSG00000167703				40	0	0	19	7	26.9231
RAB34	0	genome.wustl.edu	37	17	27043058	27043058	+	Silent	SNP	G	G	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	17	27043058	27043058	G	T	SNP	RAB34	ENST00000447716	human	ensembl	74_37	-1	known	silent	c.336	p.V112	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB34	HGNC	ENSG00000109113				87	0	0	95	7	6.86275
MYO18A	0	genome.wustl.edu	37	17	27493224	27493224	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	17	27493224	27493224	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	silent	c.735	p.P245	0.075	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				81	0	0	74	4	5.12821
EFCAB5	0	genome.wustl.edu	37	17	28418902	28418902	+	Silent	SNP	C	C	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	17	28418902	28418902	C	G	SNP	EFCAB5	ENST00000394835	human	ensembl	74_37	+1	known	silent	c.3951	p.V1317	0.001	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB5	HGNC	ENSG00000176927				84	0	0	41	5	10.8696
EVI2A	0	genome.wustl.edu	37	17	29646016	29646016	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	17	29646016	29646016	C	T	SNP	EVI2A	ENST00000247270	human	ensembl	74_37	-1	known	missense	c.85	p.E29K	0.794	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	-	no_errors	EVI2A	HGNC	ENSG00000126860				271	0	0	256	19	6.90909
MMD	0	genome.wustl.edu	37	17	53481221	53481221	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	17	53481221	53481221	A	C	SNP	MMD	ENST00000262065	human	ensembl	74_37	-1	known	missense	c.353	p.L118R	1.000	pfam_HlyIII-related,tigrfam_HylIII	pfam_HlyIII-related,tigrfam_HylIII	-	no_errors	MMD	HGNC	ENSG00000108960				84	0	0	63	26	29.2135
ERN1	0	genome.wustl.edu	37	17	62122824	62122824	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	17	62122824	62122824	C	A	SNP	ERN1	ENST00000433197	human	ensembl	74_37	-1	known	nonsense	c.2548	p.E850*	1.000	pfam_KEN_dom,superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_KEN_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN1	HGNC	ENSG00000178607				77	0	0	67	6	8.21918
TP53	0	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				21	0	0	13	6	31.5789
PFAS	0	genome.wustl.edu	37	17	8167849	8167849	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	17	8167849	8167849	G	C	SNP	PFAS	ENST00000314666	human	ensembl	74_37	+1	known	missense	c.1979	p.S660T	0.445	superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921				97	0	0	69	6	8
GAREM	0	genome.wustl.edu	37	18	29867375	29867375	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	18	29867375	29867375	G	A	SNP	GAREM	ENST00000269209	human	ensembl	74_37	-1	known	silent	c.1185	p.L395	1.000	NULL	superfamily_SAM/pointed	-	no_errors	GAREM	HGNC	ENSG00000141441				76	0	0	67	12	15.1899
ONECUT2	0	genome.wustl.edu	37	18	55143752	55143752	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	18	55143752	55143752	C	T	SNP	ONECUT2	ENST00000491143	human	ensembl	74_37	+1	known	missense	c.1312	p.R438C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	ONECUT2	HGNC	ENSG00000119547				56	0	0	46	8	14.8148
ZNF236	0	genome.wustl.edu	37	18	74607072	74607072	+	Silent	SNP	C	C	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	18	74607072	74607072	C	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	silent	c.1515	p.T505	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				148	0	0	92	35	27.5591
ZNF236	0	genome.wustl.edu	37	18	74607093	74607093	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	18	74607093	74607093	C	G	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.1536	p.C512W	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				132	0	0	82	28	25.4545
ZNF844	0	genome.wustl.edu	37	19	12187443	12187443	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	12187443	12187443	C	G	SNP	ZNF844	ENST00000439326	human	ensembl	74_37	+1	known	missense	c.1508	p.P503R	0.024	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF844	HGNC	ENSG00000223547				84	0	0	64	5	7.24638
CCDC130	0	genome.wustl.edu	37	19	13869729	13869729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	13869729	13869729	C	T	SNP	CCDC130	ENST00000221554	human	ensembl	74_37	+1	known	missense	c.305	p.T102M	0.999	pfam_CWC16	pfam_CWC16	-	no_errors	CCDC130	HGNC	ENSG00000104957				30	0	0	18	2	10
TPM4	0	genome.wustl.edu	37	19	16204371	16204371	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	16204371	16204371	A	G	SNP	TPM4	ENST00000344824	human	ensembl	74_37	+1	known	missense	c.665	p.E222G	1.000	pfam_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM4	HGNC	ENSG00000167460				98	0	0	74	10	11.9048
GTPBP3	0	genome.wustl.edu	37	19	17451926	17451926	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	17451926	17451926	C	A	SNP	GTPBP3	ENST00000358792	human	ensembl	74_37	+1	known	missense	c.1144	p.L382M	1.000	pfam_GTP_binding_domain,superfamily_P-loop_NTPase	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299				62	0	0	46	3	6.12245
REXO1	0	genome.wustl.edu	37	19	1816466	1816466	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	1816466	1816466	G	A	SNP	REXO1	ENST00000170168	human	ensembl	74_37	-1	known	silent	c.3420	p.I1140	0.946	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313				40	0	0	29	5	14.7059
ZNF574	0	genome.wustl.edu	37	19	42585010	42585010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	42585010	42585010	C	T	SNP	ZNF574	ENST00000222339	human	ensembl	74_37	+1	known	missense	c.2522	p.T841M	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732				209	0	0	141	20	12.4224
RTN2	0	genome.wustl.edu	37	19	45997476	45997476	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	45997476	45997476	C	T	SNP	RTN2	ENST00000245923	human	ensembl	74_37	-1	known	silent	c.762	p.Q254	0.992	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744				92	0	0	91	9	9
QPCTL	0	genome.wustl.edu	37	19	46195984	46195984	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	46195984	46195984	G	C	SNP	QPCTL	ENST00000012049	human	ensembl	74_37	+1	known	missense	c.23	p.R8P	1.000	NULL	pfam_Peptidase_M28	-	no_errors	QPCTL	HGNC	ENSG00000011478				18	0	0	13	4	23.5294
FEM1A	0	genome.wustl.edu	37	19	4793212	4793212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	4793212	4793212	G	A	SNP	FEM1A	ENST00000269856	human	ensembl	74_37	+1	known	missense	c.1346	p.R449Q	0.984	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1A	HGNC	ENSG00000141965				197	0	0	133	14	9.52381
ZNF613	0	genome.wustl.edu	37	19	52447732	52447732	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	52447732	52447732	A	T	SNP	ZNF613	ENST00000293471	human	ensembl	74_37	+1	known	missense	c.596	p.N199I	0.674	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024				361	0	0	275	34	11.0032
ZNF347	0	genome.wustl.edu	37	19	53643983	53643983	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	53643983	53643983	G	A	SNP	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	nonsense	c.2101	p.Q701*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937				147	0	0	120	12	9.09091
NLRP8	0	genome.wustl.edu	37	19	56466706	56466706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	56466706	56466706	G	A	SNP	NLRP8	ENST00000291971	human	ensembl	74_37	+1	known	missense	c.1282	p.V428I	0.037	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709				124	0	0	58	50	46.2963
CATSPERD	0	genome.wustl.edu	37	19	5778566	5778566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	5778566	5778566	C	T	SNP	CATSPERD	ENST00000381624	human	ensembl	74_37	+1	known	missense	c.2276	p.A759V	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	CATSPERD	HGNC	ENSG00000174898				77	0	0	44	4	8.33333
ZNF550	0	genome.wustl.edu	37	19	58059343	58059343	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	58059343	58059343	T	C	SNP	ZNF550	ENST00000376230	human	ensembl	74_37	-1	known	missense	c.269	p.H90R	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF550	HGNC	ENSG00000251369				128	0	0	112	14	11.1111
AFF3	0	genome.wustl.edu	37	2	100623915	100623915	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	100623915	100623915	T	A	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	missense	c.257	p.K86M	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				122	0	0	106	9	7.82609
RANBP2	0	genome.wustl.edu	37	2	109380603	109380603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	109380603	109380603	G	A	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.3608	p.R1203H	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				83	0	0	91	9	9
DPP10	0	genome.wustl.edu	37	2	116548896	116548896	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	116548896	116548896	T	G	SNP	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	missense	c.1676	p.F559C	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497				117	0	0	86	13	13.1313
LCT	0	genome.wustl.edu	37	2	136575081	136575081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	136575081	136575081	C	T	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	missense	c.1537	p.E513K	0.907	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				57	0	0	66	5	7.04225
SPOPL	0	genome.wustl.edu	37	2	139326627	139326627	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	139326627	139326627	C	T	SNP	SPOPL	ENST00000280098	human	ensembl	74_37	+1	known	missense	c.1156	p.R386C	1.000	NULL	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228				315	0	0	311	17	5.18293
ZEB2	0	genome.wustl.edu	37	2	145156214	145156214	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	145156214	145156214	T	G	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.2540	p.N847T	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				91	0	0	78	6	7.14286
GRB14	0	genome.wustl.edu	37	2	165365252	165365252	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	165365252	165365252	C	T	SNP	GRB14	ENST00000263915	human	ensembl	74_37	-1	known	silent	c.927	p.K309	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290				81	0	0	70	6	7.89474
WIPF1	0	genome.wustl.edu	37	2	175437098	175437098	+	Silent	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	175437098	175437098	A	G	SNP	WIPF1	ENST00000272746	human	ensembl	74_37	-1	known	silent	c.435	p.S145	0.996	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF1	HGNC	ENSG00000115935				54	0	0	30	7	18.9189
HOXD10	0	genome.wustl.edu	37	2	176983843	176983843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	176983843	176983843	G	A	SNP	HOXD10	ENST00000249501	human	ensembl	74_37	+1	known	missense	c.907	p.V303I	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD10	HGNC	ENSG00000128710				156	1	0.636943	89	29	24.5763
ZNF804A	0	genome.wustl.edu	37	2	185801262	185801262	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	185801262	185801262	T	G	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.1139	p.V380G	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				42	0	0	48	7	12.7273
MYT1L	0	genome.wustl.edu	37	2	1926913	1926913	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	1926913	1926913	T	C	SNP	MYT1L	ENST00000399161	human	ensembl	74_37	-1	known	missense	c.628	p.K210E	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487				42	0	0	33	4	10.8108
CDK15	0	genome.wustl.edu	37	2	202672278	202672278	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	202672278	202672278	C	T	SNP	CDK15	ENST00000374598	human	ensembl	74_37	+1	known	missense	c.185	p.A62V	0.035	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK15	HGNC	ENSG00000138395				156	0	0	107	23	17.6923
INO80D	0	genome.wustl.edu	37	2	206892937	206892937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	206892937	206892937	C	T	SNP	INO80D	ENST00000403263	human	ensembl	74_37	-1	known	missense	c.1196	p.R399Q	1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933				13	0	0	12	4	25
ERBB4	0	genome.wustl.edu	37	2	212251754	212251754	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	212251754	212251754	A	C	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.3305	p.F1102C	0.992	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				104	0	0	70	6	7.89474
SMARCAL1	0	genome.wustl.edu	37	2	217279594	217279594	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	217279594	217279594	A	G	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	missense	c.167	p.N56S	0.000	NULL	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375				153	0	0	83	6	6.74157
TUBA4B	0	genome.wustl.edu	37	2	220136767	220136767	+	RNA	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	220136767	220136767	C	T	SNP	TUBA4B	ENST00000490341	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.373	-	-	-	no_errors	TUBA4B	HGNC	ENSG00000243910				41	0	0	27	4	12.9032
AAK1	0	genome.wustl.edu	37	2	69870090	69870090	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	69870090	69870090	G	A	SNP	AAK1	ENST00000409085	human	ensembl	74_37	-1	known	missense	c.83	p.S28L	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AAK1	HGNC	ENSG00000115977				31	0	0	26	9	25.7143
C2orf42	0	genome.wustl.edu	37	2	70377631	70377631	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	2	70377631	70377631	G	C	SNP	C2orf42	ENST00000264434	human	ensembl	74_37	-1	known	missense	c.1582	p.P528A	1.000	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998				77	0	0	73	4	5.19481
MYH7B	0	genome.wustl.edu	37	20	33585431	33585431	+	Silent	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	20	33585431	33585431	G	C	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	silent	c.3861	p.L1287	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				51	0	0	59	5	7.8125
SEMG1	0	genome.wustl.edu	37	20	43837052	43837052	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	20	43837052	43837052	C	A	SNP	SEMG1	ENST00000372781	human	ensembl	74_37	+1	known	missense	c.1114	p.R372S	0.001	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG1	HGNC	ENSG00000124233				56	0	0	72	5	6.49351
ATP9A	0	genome.wustl.edu	37	20	50238633	50238633	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	20	50238633	50238633	C	T	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	missense	c.2095	p.D699N	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				134	0	0	162	12	6.89655
LRRN4	0	genome.wustl.edu	37	20	6022187	6022187	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	20	6022187	6022187	G	C	SNP	LRRN4	ENST00000378858	human	ensembl	74_37	-1	known	missense	c.1704	p.C568W	0.880	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4	HGNC	ENSG00000125872				105	0	0	100	6	5.66038
KRTAP13-3	0	genome.wustl.edu	37	21	31797958	31797958	+	Silent	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	21	31797958	31797958	A	G	SNP	KRTAP13-3	ENST00000390690	human	ensembl	74_37	-1	known	silent	c.273	p.S91	0.002	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP13-3	HGNC	ENSG00000240432				60	0	0	48	6	11.1111
TIAM1	0	genome.wustl.edu	37	21	32493072	32493072	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	21	32493072	32493072	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.4390	p.A1464T	0.236	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				122	0	0	69	12	14.8148
DSCAM	0	genome.wustl.edu	37	21	42080477	42080477	+	Silent	SNP	A	A	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	21	42080477	42080477	A	C	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	silent	c.264	p.P88	1.000	smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				103	0	0	77	12	13.4831
TRMT2A	0	genome.wustl.edu	37	22	20103938	20103938	+	Silent	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	22	20103938	20103938	T	C	SNP	TRMT2A	ENST00000252136	human	ensembl	74_37	-1	known	silent	c.222	p.K74	1.000	pfscan_RRM_dom	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899				64	0	0	37	6	13.9535
IGLV11-55	0	genome.wustl.edu	37	22	22556244	22556244	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	22	22556244	22556244	C	T	SNP	IGLV11-55	ENST00000390286	human	ensembl	74_37	+1	known	missense	c.58	p.R20W	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGLV11-55	HGNC	ENSG00000211641				34	0	0	27	19	41.3043
MAPK8IP2	0	genome.wustl.edu	37	22	51045110	51045110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	22	51045110	51045110	G	A	SNP	MAPK8IP2	ENST00000329492	human	ensembl	74_37	+1	known	missense	c.2146	p.V716I	0.998	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP2	HGNC	ENSG00000008735				15	0	0	9	3	25
IMPG2	0	genome.wustl.edu	37	3	100951814	100951814	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	100951814	100951814	T	A	SNP	IMPG2	ENST00000193391	human	ensembl	74_37	-1	known	missense	c.3044	p.K1015M	1.000	smart_SEA_dom,pfscan_EG-like_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG2	HGNC	ENSG00000081148				87	0	0	77	12	13.4831
CNTN6	0	genome.wustl.edu	37	3	1269633	1269633	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	1269633	1269633	T	G	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.314	p.L105R	0.882	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				181	0	0	148	27	15.4286
IQSEC1	0	genome.wustl.edu	37	3	12977720	12977720	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	12977720	12977720	C	G	SNP	IQSEC1	ENST00000273221	human	ensembl	74_37	-1	known	missense	c.838	p.E280Q	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC1	HGNC	ENSG00000144711				132	0	0	96	9	8.57143
ZFYVE20	0	genome.wustl.edu	37	3	15115837	15115837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	15115837	15115837	G	A	SNP	ZFYVE20	ENST00000253699	human	ensembl	74_37	-1	known	missense	c.1807	p.P603S	0.017	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381				46	0	0	31	2	6.06061
BCHE	0	genome.wustl.edu	37	3	165547928	165547928	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	165547928	165547928	T	G	SNP	BCHE	ENST00000264381	human	ensembl	74_37	-1	known	missense	c.894	p.Q298H	0.998	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200				69	0	0	75	10	11.7647
CNTN4	0	genome.wustl.edu	37	3	2908441	2908441	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	2908441	2908441	A	G	SNP	CNTN4	ENST00000397461	human	ensembl	74_37	+1	known	missense	c.460	p.S154G	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN4	HGNC	ENSG00000144619				102	0	0	109	23	17.4242
ULK4	0	genome.wustl.edu	37	3	41938397	41938397	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	41938397	41938397	G	A	SNP	ULK4	ENST00000301831	human	ensembl	74_37	-1	known	nonsense	c.1447	p.R483*	0.943	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ULK4	HGNC	ENSG00000168038				100	0	0	80	13	13.9785
CDCP1	0	genome.wustl.edu	37	3	45132693	45132693	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	45132693	45132693	G	T	SNP	CDCP1	ENST00000296129	human	ensembl	74_37	-1	known	missense	c.1965	p.F655L	1.000	NULL	superfamily_CUB_dom	-	no_errors	CDCP1	HGNC	ENSG00000163814				82	0	0	75	4	5.06329
QRICH1	0	genome.wustl.edu	37	3	49094328	49094328	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	49094328	49094328	C	T	SNP	QRICH1	ENST00000357496	human	ensembl	74_37	-1	known	silent	c.1305	p.Q435	0.956	NULL	pfam_DUF3504,superfamily_DEATH-like_dom	-	no_errors	QRICH1	HGNC	ENSG00000198218				57	0	0	51	3	5.55556
QRICH1	0	genome.wustl.edu	37	3	49094329	49094329	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	49094329	49094329	T	G	SNP	QRICH1	ENST00000357496	human	ensembl	74_37	-1	known	missense	c.1304	p.Q435P	0.948	NULL	pfam_DUF3504,superfamily_DEATH-like_dom	-	no_errors	QRICH1	HGNC	ENSG00000198218				59	0	0	51	3	5.55556
ACTR8	0	genome.wustl.edu	37	3	53909990	53909990	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	53909990	53909990	G	C	SNP	ACTR8	ENST00000335754	human	ensembl	74_37	-1	known	missense	c.896	p.S299C	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR8	HGNC	ENSG00000113812				108	0	0	90	10	10
FAT4	0	genome.wustl.edu	37	4	126412149	126412149	+	Silent	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	4	126412149	126412149	T	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.14172	p.P4724	0.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				97	0	0	75	7	8.53659
ACSL1	0	genome.wustl.edu	37	4	185691577	185691577	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	4	185691577	185691577	G	A	SNP	ACSL1	ENST00000281455	human	ensembl	74_37	-1	known	silent	c.969	p.A323	0.998	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL1	HGNC	ENSG00000151726				62	0	0	73	6	7.59494
SLIT2	0	genome.wustl.edu	37	4	20618698	20618698	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	4	20618698	20618698	A	T	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.4013	p.K1338M	1.000	smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				38	0	0	37	3	7.5
ZBTB49	0	genome.wustl.edu	37	4	4303731	4303731	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	4	4303731	4303731	T	A	SNP	ZBTB49	ENST00000337872	human	ensembl	74_37	+1	known	missense	c.168	p.N56K	0.949	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB49	HGNC	ENSG00000168826				68	0	0	52	4	7.14286
LRRC66	0	genome.wustl.edu	37	4	52883456	52883456	+	Silent	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	4	52883456	52883456	T	C	SNP	LRRC66	ENST00000343457	human	ensembl	74_37	-1	known	silent	c.324	p.L108	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993				101	0	0	68	15	18.0723
PPP2R2C	0	genome.wustl.edu	37	4	6374386	6374386	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	4	6374386	6374386	G	C	SNP	PPP2R2C	ENST00000335585	human	ensembl	74_37	-1	known	missense	c.489	p.S163R	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2C	HGNC	ENSG00000074211				183	1	0.543478	123	11	8.20896
SLCO6A1	0	genome.wustl.edu	37	5	101834337	101834337	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	5	101834337	101834337	T	C	SNP	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	missense	c.212	p.K71R	0.000	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359				157	0	0	79	9	10.2273
PCDHB7	0	genome.wustl.edu	37	5	140553947	140553947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	5	140553947	140553947	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.1531	p.G511S	0.990	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				133	0	0	112	8	6.66667
SH3PXD2B	0	genome.wustl.edu	37	5	171766824	171766824	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	5	171766824	171766824	T	C	SNP	SH3PXD2B	ENST00000311601	human	ensembl	74_37	-1	known	missense	c.1285	p.S429G	1.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705				49	0	0	18	5	21.7391
C6	0	genome.wustl.edu	37	5	41149516	41149516	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	5	41149516	41149516	T	G	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	missense	c.2450	p.K817T	0.180	pfam_Kazal_dom,smart_FacI_MAC	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537				158	0	0	210	20	8.69565
ZDHHC11	0	genome.wustl.edu	37	5	837555	837555	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	5	837555	837555	G	A	SNP	ZDHHC11	ENST00000283441	human	ensembl	74_37	-1	known	silent	c.825	p.N275	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818				202	0	0	246	13	5.01931
NBPF22P	0	genome.wustl.edu	37	5	85578690	85578690	+	RNA	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	5	85578690	85578690	G	A	SNP	NBPF22P	ENST00000590707	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NBPF22P	HGNC	ENSG00000205449				38	0	0	16	3	15.7895
PRDM13	0	genome.wustl.edu	37	6	100054924	100054924	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	6	100054924	100054924	C	G	SNP	PRDM13	ENST00000369215	human	ensembl	74_37	+1	known	missense	c.14	p.A5G	0.491	NULL	smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM13	HGNC	ENSG00000112238				21	0	0	11	5	31.25
FYN	0	genome.wustl.edu	37	6	112020843	112020843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	6	112020843	112020843	G	A	SNP	FYN	ENST00000368678	human	ensembl	74_37	-1	known	missense	c.728	p.T243I	1.000	pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FYN	HGNC	ENSG00000010810				57	0	0	43	5	10.4167
CEP85L	0	genome.wustl.edu	37	6	118886759	118886759	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	6	118886759	118886759	T	G	SNP	CEP85L	ENST00000368488	human	ensembl	74_37	-1	known	missense	c.962	p.Y321S	0.985	NULL	NULL	-	no_errors	CEP85L	HGNC	ENSG00000111860				96	0	0	81	6	6.89655
RNF217	0	genome.wustl.edu	37	6	125397989	125397989	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	6	125397989	125397989	C	T	SNP	RNF217	ENST00000560949	human	ensembl	74_37	+1	known	nonsense	c.763	p.R255*	1.000	NULL	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373				125	0	0	114	12	9.52381
EYA4	0	genome.wustl.edu	37	6	133769263	133769263	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	6	133769263	133769263	G	T	SNP	EYA4	ENST00000355167	human	ensembl	74_37	+1	known	missense	c.223	p.V75F	1.000	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319				53	0	0	53	4	7.01754
SYNE1	0	genome.wustl.edu	37	6	152542686	152542686	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	6	152542686	152542686	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.21531	p.Q7177H	0.993	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				98	0	0	71	8	10.1266
HIST1H3G	0	genome.wustl.edu	37	6	26271499	26271499	+	Silent	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	6	26271499	26271499	T	C	SNP	HIST1H3G	ENST00000305910	human	ensembl	74_37	-1	known	silent	c.114	p.K38	1.000	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3G	HGNC	ENSG00000256018				88	0	0	42	31	42.4658
ZSCAN31	0	genome.wustl.edu	37	6	28294500	28294500	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	6	28294500	28294500	G	A	SNP	ZSCAN31	ENST00000344279	human	ensembl	74_37	-1	known	nonsense	c.664	p.R222*	0.004	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN31	HGNC	ENSG00000235109				69	0	0	100	7	6.54206
OR2W1	0	genome.wustl.edu	37	6	29012626	29012626	+	Silent	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	6	29012626	29012626	T	C	SNP	OR2W1	ENST00000377175	human	ensembl	74_37	-1	known	silent	c.327	p.S109	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2W1	HGNC	ENSG00000204704				40	0	0	58	4	6.45161
IMPG1	0	genome.wustl.edu	37	6	76712691	76712691	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	6	76712691	76712691	A	C	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	missense	c.1235	p.L412R	0.390	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG1	HGNC	ENSG00000112706				61	0	0	51	12	19.0476
DOPEY1	0	genome.wustl.edu	37	6	83806789	83806789	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	6	83806789	83806789	C	T	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	silent	c.93	p.S31	1.000	pfam_Dopey_N	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				168	0	0	139	9	6.08108
BCAP29	0	genome.wustl.edu	37	7	107254166	107254166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	107254166	107254166	G	A	SNP	BCAP29	ENST00000379119	human	ensembl	74_37	+1	known	missense	c.758	p.G253D	0.079	NULL	pfam_Bap31	-	no_errors	BCAP29	HGNC	ENSG00000075790				53	0	0	43	4	8.51064
GPER1	0	genome.wustl.edu	37	7	1132151	1132151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	1132151	1132151	G	A	SNP	GPER1	ENST00000297469	human	ensembl	74_37	+1	known	missense	c.787	p.A263T	0.734	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPER1	HGNC	ENSG00000164850				58	0	0	48	5	9.43396
THSD7A	0	genome.wustl.edu	37	7	11676533	11676533	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	11676533	11676533	C	A	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	missense	c.246	p.R82S	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				169	0	0	156	9	5.45455
CTTNBP2	0	genome.wustl.edu	37	7	117432038	117432038	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	117432038	117432038	G	A	SNP	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	silent	c.1212	p.N404	0.000	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				179	0	0	141	15	9.61538
TRA2A	0	genome.wustl.edu	37	7	23547125	23547125	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	23547125	23547125	C	T	SNP	TRA2A	ENST00000297071	human	ensembl	74_37	-1	known	silent	c.555	p.L185	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2A	HGNC	ENSG00000164548				173	0	0	195	18	8.4507
GLI3	0	genome.wustl.edu	37	7	42004358	42004358	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	42004358	42004358	T	G	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.4313	p.N1438T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				97	0	0	100	8	7.40741
ADCY1	0	genome.wustl.edu	37	7	45701777	45701777	+	Silent	SNP	C	C	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	45701777	45701777	C	A	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	silent	c.1569	p.P523	0.992	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				23	0	0	14	23	62.1622
ZPBP	0	genome.wustl.edu	37	7	50070871	50070871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	50070871	50070871	C	T	SNP	ZPBP	ENST00000046087	human	ensembl	74_37	-1	known	missense	c.523	p.A175T	1.000	pfam_Sp38-bd	pfam_Sp38-bd,pfscan_Ig-like_dom	-	no_errors	ZPBP	HGNC	ENSG00000042813				26	0	0	49	3	5.76923
ZNF479	0	genome.wustl.edu	37	7	57187980	57187980	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	57187980	57187980	T	C	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	missense	c.1142	p.Y381C	0.156	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				44	0	0	51	4	7.27273
TBL2	0	genome.wustl.edu	37	7	72984996	72984996	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	72984996	72984996	C	T	SNP	TBL2	ENST00000305632	human	ensembl	74_37	-1	known	silent	c.1185	p.A395	0.008	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL2	HGNC	ENSG00000106638				42	0	0	40	5	11.1111
SEMA3D	0	genome.wustl.edu	37	7	84727149	84727149	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	84727149	84727149	A	T	SNP	SEMA3D	ENST00000284136	human	ensembl	74_37	-1	known	missense	c.284	p.L95Q	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3D	HGNC	ENSG00000153993				170	0	0	128	7	5.18519
ABCB1	0	genome.wustl.edu	37	7	87179355	87179355	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	87179355	87179355	G	A	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	nonsense	c.1366	p.Q456*	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				73	0	0	50	5	9.09091
COL1A2	0	genome.wustl.edu	37	7	94039585	94039585	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	7	94039585	94039585	A	T	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.1067	p.E356V	0.999	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				72	0	0	45	9	16.6667
ANGPT1	0	genome.wustl.edu	37	8	108334284	108334284	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	8	108334284	108334284	T	G	SNP	ANGPT1	ENST00000517746	human	ensembl	74_37	-1	known	missense	c.648	p.K216N	1.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT1	HGNC	ENSG00000154188				47	0	0	43	7	14
TRPS1	0	genome.wustl.edu	37	8	116617214	116617214	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	8	116617214	116617214	T	G	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.982	p.T328P	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				100	0	0	81	15	15.625
FAM83H	0	genome.wustl.edu	37	8	144812561	144812561	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	8	144812561	144812561	C	T	SNP	FAM83H	ENST00000388913	human	ensembl	74_37	-1	known	silent	c.192	p.V64	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83H	HGNC	ENSG00000180921				78	0	0	83	8	8.79121
SPATC1	0	genome.wustl.edu	37	8	145096245	145096245	+	Silent	SNP	C	C	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	8	145096245	145096245	C	G	SNP	SPATC1	ENST00000377470	human	ensembl	74_37	+1	known	silent	c.1419	p.V473	1.000	NULL	NULL	-	no_errors	SPATC1	HGNC	ENSG00000186583				46	0	0	39	3	7.14286
ARHGAP39	0	genome.wustl.edu	37	8	145770695	145770695	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	8	145770695	145770695	T	A	SNP	ARHGAP39	ENST00000377307	human	ensembl	74_37	-1	known	missense	c.2459	p.K820M	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_dom,smart_WW_dom,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799				71	0	0	63	6	8.69565
NRG1	0	genome.wustl.edu	37	8	32599561	32599561	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	8	32599561	32599561	A	G	SNP	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	missense	c.668	p.E223G	1.000	NULL	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				64	0	0	45	4	8.16327
PREX2	0	genome.wustl.edu	37	8	68931899	68931899	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	8	68931899	68931899	T	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.329	p.L110P	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				37	0	0	26	4	13.3333
PREX2	0	genome.wustl.edu	37	8	69069612	69069612	+	Silent	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	8	69069612	69069612	T	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	silent	c.4287	p.F1429	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				81	0	0	63	6	8.69565
TPD52	0	genome.wustl.edu	37	8	80954873	80954873	+	Silent	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	8	80954873	80954873	T	C	SNP	TPD52	ENST00000537855	human	ensembl	74_37	-1	known	silent	c.537	p.E179	1.000	pfam_TPD52	pfam_TPD52,pfam_Ribosomal_S28_mit,superfamily_NA-bd_OB-fold	-	no_errors	TPD52	HGNC	ENSG00000076554				55	0	0	52	4	7.14286
CNBD1	0	genome.wustl.edu	37	8	88365898	88365898	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	8	88365898	88365898	T	C	SNP	CNBD1	ENST00000518476	human	ensembl	74_37	+1	known	missense	c.1187	p.L396P	0.229	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNBD1	HGNC	ENSG00000176571				49	0	0	34	5	12.8205
KIAA1429	0	genome.wustl.edu	37	8	95539023	95539023	+	Silent	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	8	95539023	95539023	G	A	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	silent	c.1449	p.I483	0.931	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				78	0	0	53	13	19.697
GPR21	0	genome.wustl.edu	37	9	125796920	125796920	+	Silent	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	9	125796920	125796920	C	T	SNP	GPR21	ENST00000373642	human	ensembl	74_37	+1	known	silent	c.75	p.V25	0.841	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR21	HGNC	ENSG00000188394				117	0	0	107	8	6.95652
DDX31	0	genome.wustl.edu	37	9	135505739	135505739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	9	135505739	135505739	C	T	SNP	DDX31	ENST00000372159	human	ensembl	74_37	-1	known	missense	c.1858	p.A620T	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485				141	0	0	81	9	10
PNPLA7	0	genome.wustl.edu	37	9	140438250	140438250	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	9	140438250	140438250	G	T	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.291	p.N97K	0.014	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				73	0	0	64	4	5.88235
SLC24A2	0	genome.wustl.edu	37	9	19786062	19786062	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	9	19786062	19786062	A	T	SNP	SLC24A2	ENST00000341998	human	ensembl	74_37	-1	known	missense	c.803	p.L268H	0.946	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A2	HGNC	ENSG00000155886				64	0	0	40	9	18.3673
FOCAD	0	genome.wustl.edu	37	9	20916932	20916932	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	9	20916932	20916932	G	T	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	missense	c.2848	p.A950S	1.000	superfamily_ARM-type_fold	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				32	0	0	28	2	6.66667
PTPRD	0	genome.wustl.edu	37	9	8521544	8521544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	9	8521544	8521544	G	A	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	missense	c.694	p.R232C	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				75	0	0	69	13	15.8537
MAGEC1	0	genome.wustl.edu	37	X	140996300	140996300	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	X	140996300	140996300	T	A	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.3110	p.F1037Y	0.024	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				45	0	0	47	7	12.963
MAGEC2	0	genome.wustl.edu	37	X	141291458	141291458	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	X	141291458	141291458	A	G	SNP	MAGEC2	ENST00000247452	human	ensembl	74_37	-1	known	missense	c.316	p.S106P	0.002	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774				25	0	0	31	3	8.82353
ATP6AP1	0	genome.wustl.edu	37	X	153664188	153664188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	X	153664188	153664188	G	A	SNP	ATP6AP1	ENST00000369762	human	ensembl	74_37	+1	known	missense	c.1364	p.R455H	1.000	NULL	pfam_BIG/ATPase_V1_suS1	-	no_errors	ATP6AP1	HGNC	ENSG00000071553				161	0	0	147	18	10.9091
MAGEB6	0	genome.wustl.edu	37	X	26212113	26212113	+	Silent	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	X	26212113	26212113	T	C	SNP	MAGEB6	ENST00000379034	human	ensembl	74_37	+1	known	silent	c.150	p.G50	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746				39	0	0	32	6	15.7895
PAGE4	0	genome.wustl.edu	37	X	49597160	49597160	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	X	49597160	49597160	G	C	SNP	PAGE4	ENST00000218068	human	ensembl	74_37	+1	known	missense	c.199	p.D67H	0.002	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE4	HGNC	ENSG00000101951				17	0	0	33	5	13.1579
KLHL4	0	genome.wustl.edu	37	X	86924353	86924353	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	X	86924353	86924353	T	G	SNP	KLHL4	ENST00000373114	human	ensembl	74_37	+1	known	missense	c.2122	p.F708V	0.003	smart_Kelch_1	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271				33	0	0	26	9	25.7143
PCDH11X	0	genome.wustl.edu	37	X	91131794	91131794	+	Silent	SNP	T	T	C			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	X	91131794	91131794	T	C	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	silent	c.555	p.F185	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				29	0	0	32	6	15.7895
PTHLH	0	genome.wustl.edu	37	12	28114898	28114898	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	12	28114898	28114898	T	-	DEL	PTHLH	ENST00000354417	human	ensembl	74_37	-1	known	frame_shift_del	c.557	p.K186fs	0.135	NULL	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494				8	0	0	16	2	11.1111
GRASP	0	genome.wustl.edu	37	12	52409005	52409008	+	RNA	DEL	TATT	TATT	-			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	TATT	TATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	12	52409005	52409008	TATT	-	DEL	GRASP	ENST00000552963	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.950:0.992:0.999:1.000	-	-	-	no_errors	GRASP	HGNC	ENSG00000161835				33	0	0	21	2	8.69565
EPOR	0	genome.wustl.edu	37	19	11488878	11488883	+	In_Frame_Del	DEL	GCAAGA	GCAAGA	-			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	GCAAGA	GCAAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	19	11488878	11488883	GCAAGA	-	DEL	EPOR	ENST00000222139	human	ensembl	74_37	-1	known	in_frame_del	c.1309_1304	p.LL435in_frame_del	0.749:0.766:0.740:0.718:0.760:0.856	pirsf_Erythropoietin_rcpt	pirsf_Erythropoietin_rcpt,pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	EPOR	HGNC	ENSG00000187266				58	0	0	21	7	25
MIR644A	0	genome.wustl.edu	37	20	33054129	33054130	+	RNA	INS	-	-	T			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	20	33054129	33054130	-	T	INS	MIR644A	ENST00000385262	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024:0.030	-	-	-	no_errors	MIR644A	HGNC	ENSG00000207997				11	0	0	17	4	19.0476
GOLGA4	0	genome.wustl.edu	37	3	37360697	37360697	+	RNA	DEL	T	T	-			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	3	37360697	37360697	T	-	DEL	GOLGA4	ENST00000435830	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	GOLGA4	HGNC	ENSG00000144674				52	0	0	39	4	9.30233
USP38	0	genome.wustl.edu	37	4	144135153	144135153	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	4	144135153	144135153	A	-	DEL	USP38	ENST00000307017	human	ensembl	74_37	+1	known	frame_shift_del	c.2024	p.T677fs	0.991	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP38	HGNC	ENSG00000170185				134	0	0	116	26	18.3099
PCDHAC1	0	genome.wustl.edu	37	5	140306935	140306936	+	In_Frame_Ins	INS	-	-	GGG			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	5	140306935	140306936	-	GGG	INS	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	in_frame_ins	c.458_459	p.155in_frame_insG	0.997:0.984	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				138	0	0	72	18	20
SPINK5	0	genome.wustl.edu	37	5	147499875	147499875	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	5	147499875	147499875	A	-	DEL	SPINK5	ENST00000359874	human	ensembl	74_37	+1	known	frame_shift_del	c.2459	p.K823fs	0.998	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK5	HGNC	ENSG00000133710				26	0	0	20	4	16.6667
CDK5RAP2	0	genome.wustl.edu	37	9	123205914	123205915	+	In_Frame_Ins	INS	-	-	TGC			TCGA-BR-7901-01A-11D-2201-08	TCGA-BR-7901-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33ad3e8c-f5af-40e4-b6be-bbecd2e9cca1	bf460fea-4897-4f6b-a171-649f443ff56e	9	123205914	123205915	-	TGC	INS	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	in_frame_ins	c.3132_3131	p.1045in_frame_insQ	0.010:0.703	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				168	0	0	116	43	27.044
