Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TRMT13	0	genome.wustl.edu	37	1	100613741	100613741	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	100613741	100613741	G	A	SNP	TRMT13	ENST00000370141	human	ensembl	74_37	+1	known	nonsense	c.1109	p.W370*	1.000	pfam_Methyltransferase_TRM13	pfam_Methyltransferase_TRM13,pfam_Znf_CCCH-type_TRM13,pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	TRMT13	HGNC	ENSG00000122435				173	0	0	63	27	30
FNDC7	0	genome.wustl.edu	37	1	109275933	109275933	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	109275933	109275933	G	A	SNP	FNDC7	ENST00000271311	human	ensembl	74_37	+1	known	missense	c.1922	p.G641D	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC7	HGNC	ENSG00000143107				328	0	0	157	41	20.7071
TARDBP	0	genome.wustl.edu	37	1	11073960	11073960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	11073960	11073960	G	A	SNP	TARDBP	ENST00000240185	human	ensembl	74_37	+1	known	missense	c.176	p.G59E	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TARDBP	HGNC	ENSG00000120948				164	0	0	67	21	23.8636
KCND3	0	genome.wustl.edu	37	1	112329676	112329676	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	112329676	112329676	A	G	SNP	KCND3	ENST00000315987	human	ensembl	74_37	-1	known	missense	c.1159	p.C387R	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385				109	0	0	46	15	24.5902
AMPD1	0	genome.wustl.edu	37	1	115218621	115218621	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	115218621	115218621	A	C	SNP	AMPD1	ENST00000520113	human	ensembl	74_37	-1	known	missense	c.1491	p.D497E	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748				208	0	0	75	21	21.875
IGSF3	0	genome.wustl.edu	37	1	117156429	117156429	+	Silent	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	117156429	117156429	G	T	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	silent	c.790	p.R264	0.995	smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061				86	0	0	59	4	6.34921
PRAMEF12	0	genome.wustl.edu	37	1	12837238	12837238	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	12837238	12837238	G	A	SNP	PRAMEF12	ENST00000357726	human	ensembl	74_37	+1	known	silent	c.948	p.P316	0.000	NULL	NULL	-	no_errors	PRAMEF12	HGNC	ENSG00000116726				288	0	0	143	46	24.3386
PPIAL4A	0	genome.wustl.edu	37	1	147955256	147955256	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	147955256	147955256	A	G	SNP	PPIAL4A	ENST00000539781	human	ensembl	74_37	-1	known	missense	c.89	p.L30P	0.972	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIAL4A	HGNC	ENSG00000255963				46	0	0	23	3	11.5385
HRNR	0	genome.wustl.edu	37	1	152188847	152188847	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	152188847	152188847	A	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.5258	p.V1753A	0.002	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				34	0	0	54	8	12.9032
FLG2	0	genome.wustl.edu	37	1	152323428	152323428	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	152323428	152323428	T	G	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.6834	p.Q2278H	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				518	0	0	222	50	18.3824
LAMB3	0	genome.wustl.edu	37	1	209801395	209801395	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	209801395	209801395	G	T	SNP	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	missense	c.1273	p.P425T	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878				21	0	0	13	2	13.3333
ESRRG	0	genome.wustl.edu	37	1	216680423	216680423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	216680423	216680423	C	T	SNP	ESRRG	ENST00000408911	human	ensembl	74_37	-1	known	missense	c.1235	p.R412H	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	ESRRG	HGNC	ENSG00000196482				126	0	0	60	14	18.9189
WDR26	0	genome.wustl.edu	37	1	224588663	224588663	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	224588663	224588663	A	C	SNP	WDR26	ENST00000414423	human	ensembl	74_37	-1	known	missense	c.1408	p.F470V	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR26	HGNC	ENSG00000162923				67	0	0	40	11	21.5686
LYST	0	genome.wustl.edu	37	1	235916455	235916455	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	235916455	235916455	A	C	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.7349	p.L2450R	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				144	0	0	42	11	20.7547
PLD5	0	genome.wustl.edu	37	1	242383296	242383296	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	242383296	242383296	C	T	SNP	PLD5	ENST00000536534	human	ensembl	74_37	-1	known	silent	c.729	p.L243	0.991	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287				86	0	0	46	7	13.2075
OR2T2	0	genome.wustl.edu	37	1	248616883	248616883	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	248616883	248616883	T	A	SNP	OR2T2	ENST00000342927	human	ensembl	74_37	+1	known	missense	c.785	p.L262Q	0.339	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240				23	0	0	12	3	20
TP73	0	genome.wustl.edu	37	1	3649564	3649564	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	3649564	3649564	A	G	SNP	TP73	ENST00000378295	human	ensembl	74_37	+1	known	missense	c.1832	p.D611G	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP73	HGNC	ENSG00000078900				20	0	0	7	3	30
MACF1	0	genome.wustl.edu	37	1	39801200	39801200	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	39801200	39801200	G	A	SNP	MACF1	ENST00000567887	human	ensembl	74_37	+1	putative	silent	c.9051	p.V3017	0.013	superfamily_RNaseH-like_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				136	0	0	47	10	17.5439
NASP	0	genome.wustl.edu	37	1	46083181	46083181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	46083181	46083181	C	T	SNP	NASP	ENST00000402363	human	ensembl	74_37	+1	known	missense	c.2210	p.A737V	1.000	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780				105	1	0.943396	56	18	24.3243
IL23R	0	genome.wustl.edu	37	1	67666558	67666558	+	Silent	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	67666558	67666558	G	T	SNP	IL23R	ENST00000347310	human	ensembl	74_37	+1	known	silent	c.630	p.L210	0.283	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL23R	HGNC	ENSG00000162594				171	0	0	74	13	14.9425
PLEKHN1	0	genome.wustl.edu	37	1	908657	908657	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	908657	908657	G	A	SNP	PLEKHN1	ENST00000379409	human	ensembl	74_37	+1	known	missense	c.1400	p.R467Q	0.000	NULL	smart_Pleckstrin_homology	-	no_errors	PLEKHN1	HGNC	ENSG00000187583				9	0	0	7	5	41.6667
EVI5	0	genome.wustl.edu	37	1	93073222	93073222	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	93073222	93073222	T	G	SNP	EVI5	ENST00000543509	human	ensembl	74_37	-1	known	missense	c.1875	p.K625N	0.991	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208				61	0	0	17	9	34.6154
MLLT10	0	genome.wustl.edu	37	10	21827857	21827857	+	RNA	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	10	21827857	21827857	C	T	SNP	MLLT10	ENST00000471315	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	MLLT10	HGNC	ENSG00000078403				92	0	0	34	9	20.9302
THNSL1	0	genome.wustl.edu	37	10	25313384	25313384	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	10	25313384	25313384	G	C	SNP	THNSL1	ENST00000376356	human	ensembl	74_37	+1	known	missense	c.1232	p.G411A	1.000	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	pfam_Shikimate_kinase/TSH1,pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_P-loop_NTPase,prints_Shikimate_kinase/TSH1,tigrfam_Thr_synthase_like	-	no_errors	THNSL1	HGNC	ENSG00000185875				209	0	0	70	20	22.2222
OR13A1	0	genome.wustl.edu	37	10	45799788	45799788	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	10	45799788	45799788	G	A	SNP	OR13A1	ENST00000374401	human	ensembl	74_37	-1	known	missense	c.83	p.T28I	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13A1	HGNC	ENSG00000256574				157	0	0	61	16	20.7792
ZWINT	0	genome.wustl.edu	37	10	58119894	58119894	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	10	58119894	58119894	C	G	SNP	ZWINT	ENST00000373944	human	ensembl	74_37	-1	known	missense	c.141	p.Q47H	0.787	NULL	NULL	-	no_errors	ZWINT	HGNC	ENSG00000122952				72	0	0	36	14	28
HERC4	0	genome.wustl.edu	37	10	69682805	69682805	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	10	69682805	69682805	G	A	SNP	HERC4	ENST00000395198	human	ensembl	74_37	-1	known	silent	c.3057	p.L1019	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634				359	1	0.277778	140	38	21.3483
CDH23	0	genome.wustl.edu	37	10	73559288	73559288	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	10	73559288	73559288	C	G	SNP	CDH23	ENST00000398788	human	ensembl	74_37	+1	known	missense	c.544	p.L182V	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				266	0	0	140	35	20
GATA3	0	genome.wustl.edu	37	10	8115837	8115837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	10	8115837	8115837	G	A	SNP	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	missense	c.1186	p.A396T	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				241	1	0.413223	126	31	19.7452
TUBB8	0	genome.wustl.edu	37	10	94004	94004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	10	94004	94004	C	T	SNP	TUBB8	ENST00000309812	human	ensembl	74_37	-1	known	missense	c.328	p.A110T	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876				52	0	0	45	8	15.0943
R3HCC1L	0	genome.wustl.edu	37	10	99969588	99969588	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	10	99969588	99969588	A	T	SNP	R3HCC1L	ENST00000370584	human	ensembl	74_37	+1	known	missense	c.1717	p.I573F	0.000	NULL	NULL	-	no_errors	R3HCC1L	HGNC	ENSG00000166024				228	0	0	92	25	21.3675
SLC35F2	0	genome.wustl.edu	37	11	107663450	107663450	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	11	107663450	107663450	G	A	SNP	SLC35F2	ENST00000429869	human	ensembl	74_37	-1	known	missense	c.1016	p.T339M	0.694	pfam_SLC35_F1/F2/F6	pfam_SLC35_F1/F2/F6,pfam_DMT,pfam_UAA,pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35F2	HGNC	ENSG00000110660				72	0	0	45	6	11.7647
NPAT	0	genome.wustl.edu	37	11	108043025	108043025	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	11	108043025	108043025	G	T	SNP	NPAT	ENST00000278612	human	ensembl	74_37	-1	known	missense	c.2686	p.P896T	0.244	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308				264	0	0	116	8	6.45161
KMT2A	0	genome.wustl.edu	37	11	118363776	118363776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	11	118363776	118363776	C	T	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.5000	p.A1667V	1.000	smart_Bromodomain,pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				261	1	0.381679	88	21	19.2661
TOLLIP	0	genome.wustl.edu	37	11	1311591	1311591	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	11	1311591	1311591	G	A	SNP	TOLLIP	ENST00000317204	human	ensembl	74_37	-1	known	nonsense	c.232	p.R78*	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_CUE,pfam_C2_dom,superfamily_C2_dom,superfamily_UBA-like,smart_C2_dom,smart_CUE,pfscan_CUE	-	no_errors	TOLLIP	HGNC	ENSG00000078902				80	0	0	45	15	25
PHLDA2	0	genome.wustl.edu	37	11	2950325	2950325	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	11	2950325	2950325	C	A	SNP	PHLDA2	ENST00000314222	human	ensembl	74_37	-1	known	missense	c.270	p.W90C	1.000	smart_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology	-	no_errors	PHLDA2	HGNC	ENSG00000181649				71	0	0	40	9	18.3673
ALX4	0	genome.wustl.edu	37	11	44331170	44331170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	11	44331170	44331170	G	A	SNP	ALX4	ENST00000329255	human	ensembl	74_37	-1	known	missense	c.443	p.A148V	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX4	HGNC	ENSG00000052850				26	0	0	16	3	15.7895
TRIM6-TRIM34	0	genome.wustl.edu	37	11	5624742	5624742	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	11	5624742	5624742	A	C	SNP	TRIM6-TRIM34	ENST00000354852	human	ensembl	74_37	+1	known	missense	c.284	p.N95T	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM6-TRIM34	HGNC	ENSG00000258588				132	0	0	57	9	13.6364
OR52E4	0	genome.wustl.edu	37	11	5905586	5905586	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	11	5905586	5905586	C	A	SNP	OR52E4	ENST00000316987	human	ensembl	74_37	+1	known	missense	c.64	p.L22M	0.774	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR52E4	HGNC	ENSG00000180974				286	0	0	130	22	14.4737
EHD1	0	genome.wustl.edu	37	11	64622309	64622309	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	11	64622309	64622309	G	A	SNP	EHD1	ENST00000320631	human	ensembl	74_37	-1	known	silent	c.1101	p.D367	1.000	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047				482	0	0	308	42	12
SPTBN2	0	genome.wustl.edu	37	11	66457754	66457754	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	11	66457754	66457754	C	A	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.5566	p.V1856F	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				35	0	0	31	2	6.06061
ADRBK1	0	genome.wustl.edu	37	11	67046685	67046685	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	11	67046685	67046685	C	T	SNP	ADRBK1	ENST00000308595	human	ensembl	74_37	+1	known	nonsense	c.205	p.R69*	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020				103	0	0	43	11	20.3704
STAB2	0	genome.wustl.edu	37	12	104106194	104106194	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	12	104106194	104106194	T	A	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.4384	p.F1462I	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				162	0	0	84	18	17.6471
SLC15A4	0	genome.wustl.edu	37	12	129293454	129293454	+	Silent	SNP	C	C	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	12	129293454	129293454	C	A	SNP	SLC15A4	ENST00000266771	human	ensembl	74_37	-1	known	silent	c.1137	p.L379	1.000	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC15A4	HGNC	ENSG00000139370				194	0	0	109	16	12.8
CACNB3	0	genome.wustl.edu	37	12	49220834	49220834	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	12	49220834	49220834	C	T	SNP	CACNB3	ENST00000301050	human	ensembl	74_37	+1	known	silent	c.1068	p.Y356	1.000	superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu,prints_VDCC_L_b3su	-	no_errors	CACNB3	HGNC	ENSG00000167535				341	0	0	161	43	21.0784
PFDN5	0	genome.wustl.edu	37	12	53689386	53689386	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	12	53689386	53689386	T	G	SNP	PFDN5	ENST00000551018	human	ensembl	74_37	+1	known	missense	c.35	p.L12R	1.000	superfamily_Prefoldin,tigrfam_PFD_alpha	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin,tigrfam_PFD_alpha	-	no_errors	PFDN5	HGNC	ENSG00000123349				240	0	0	124	35	22.0126
COPZ1	0	genome.wustl.edu	37	12	54741794	54741794	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	12	54741794	54741794	G	T	SNP	COPZ1	ENST00000262061	human	ensembl	74_37	+1	known	nonsense	c.406	p.E136*	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom	-	no_errors	COPZ1	HGNC	ENSG00000111481				114	0	0	52	13	20
IKZF4	0	genome.wustl.edu	37	12	56415240	56415240	+	RNA	SNP	T	T	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	12	56415240	56415240	T	A	SNP	IKZF4	ENST00000547668	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	IKZF4	HGNC	ENSG00000123411				13	0	0	7	5	41.6667
COPS7A	0	genome.wustl.edu	37	12	6839863	6839863	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	12	6839863	6839863	T	G	SNP	COPS7A	ENST00000229251	human	ensembl	74_37	+1	known	missense	c.665	p.V222G	0.993	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS7A	HGNC	ENSG00000111652				116	1	0.854701	55	23	29.4872
C12orf55	0	genome.wustl.edu	37	12	97045414	97045414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	12	97045414	97045414	C	T	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	missense	c.4921	p.R1641W	0.993	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				177	0	0	56	13	18.8406
TUBA3C	0	genome.wustl.edu	37	13	19753576	19753576	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	13	19753576	19753576	C	A	SNP	TUBA3C	ENST00000400113	human	ensembl	74_37	-1	known	missense	c.131	p.G44V	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033				235	0	0	115	25	17.8571
SLC7A1	0	genome.wustl.edu	37	13	30096542	30096542	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	13	30096542	30096542	C	A	SNP	SLC7A1	ENST00000380752	human	ensembl	74_37	-1	known	missense	c.1101	p.E367D	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A1	HGNC	ENSG00000139514				236	0	0	132	7	5.03597
NBEA	0	genome.wustl.edu	37	13	35756602	35756602	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	13	35756602	35756602	A	G	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	missense	c.4768	p.T1590A	0.758	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				126	0	0	48	5	9.43396
FREM2	0	genome.wustl.edu	37	13	39265503	39265503	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	13	39265503	39265503	A	C	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.4022	p.Y1341S	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				112	0	0	39	16	29.0909
TNFSF11	0	genome.wustl.edu	37	13	43181028	43181028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	13	43181028	43181028	G	A	SNP	TNFSF11	ENST00000239849	human	ensembl	74_37	+1	known	missense	c.928	p.A310T	1.000	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	-	no_errors	TNFSF11	HGNC	ENSG00000120659				197	0	0	68	19	21.8391
RCBTB1	0	genome.wustl.edu	37	13	50141342	50141342	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	13	50141342	50141342	C	T	SNP	RCBTB1	ENST00000258646	human	ensembl	74_37	-1	known	missense	c.74	p.C25Y	1.000	superfamily_RCC1/BLIP-II	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB1	HGNC	ENSG00000136144				85	0	0	51	10	16.3934
AHNAK2	0	genome.wustl.edu	37	14	105414259	105414259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	14	105414259	105414259	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.7529	p.A2510V	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				555	2	0.359066	297	85	22.2513
ENSG00000244306	0	genome.wustl.edu	37	14	19856759	19856759	+	RNA	SNP	A	A	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	14	19856759	19856759	A	T	SNP	ENSG00000244306	ENST00000551334	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CTD-2314B22.3	Clone_based_vega_gene	ENSG00000244306				10	0	0	5	3	37.5
FOXG1	0	genome.wustl.edu	37	14	29237469	29237469	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	14	29237469	29237469	C	T	SNP	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	silent	c.984	p.N328	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165				360	0	0	210	51	19.5402
NIN	0	genome.wustl.edu	37	14	51237170	51237170	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	14	51237170	51237170	T	C	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.1370	p.Q457R	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				118	0	0	53	13	19.697
BMP4	0	genome.wustl.edu	37	14	54418777	54418777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	14	54418777	54418777	C	T	SNP	BMP4	ENST00000245451	human	ensembl	74_37	-1	known	missense	c.164	p.R55Q	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP4	HGNC	ENSG00000125378				150	0	0	85	32	27.3504
KTN1	0	genome.wustl.edu	37	14	56079048	56079048	+	Silent	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	14	56079048	56079048	T	C	SNP	KTN1	ENST00000395309	human	ensembl	74_37	+1	known	silent	c.282	p.D94	0.989	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777				177	0	0	55	15	21.4286
ACOT2	0	genome.wustl.edu	37	14	74036520	74036520	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	14	74036520	74036520	C	T	SNP	ACOT2	ENST00000238651	human	ensembl	74_37	+1	known	silent	c.576	p.L192	0.301	pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT2	HGNC	ENSG00000119673				14	0	0	26	8	23.5294
ENSG00000258654	0	genome.wustl.edu	37	15	20554706	20554706	+	Splice_Site	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	15	20554706	20554706	T	C	SNP	ENSG00000258654	ENST00000554815	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.015	-	-	-	no_errors	RP11-509A17.3	Clone_based_vega_gene	ENSG00000258654				8	0	0	2	4	66.6667
OR4N4	0	genome.wustl.edu	37	15	22382738	22382738	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	15	22382738	22382738	A	C	SNP	OR4N4	ENST00000328795	human	ensembl	74_37	+1	known	missense	c.266	p.K89T	0.944	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706				240	0	0	96	14	12.7273
NIPA2	0	genome.wustl.edu	37	15	23006656	23006656	+	Silent	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	15	23006656	23006656	G	T	SNP	NIPA2	ENST00000337451	human	ensembl	74_37	-1	known	silent	c.648	p.P216	0.311	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPA2	HGNC	ENSG00000140157				235	0	0	78	19	19.5876
RPUSD2	0	genome.wustl.edu	37	15	40864085	40864085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	15	40864085	40864085	G	A	SNP	RPUSD2	ENST00000315616	human	ensembl	74_37	+1	known	missense	c.889	p.V297I	1.000	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	-	no_errors	RPUSD2	HGNC	ENSG00000166133				164	0	0	83	8	8.79121
TYRO3	0	genome.wustl.edu	37	15	41870130	41870130	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	15	41870130	41870130	C	G	SNP	TYRO3	ENST00000263798	human	ensembl	74_37	+1	known	missense	c.2329	p.P777A	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TYRO3	HGNC	ENSG00000092445				109	0	0	44	14	24.1379
SMAD3	0	genome.wustl.edu	37	15	67473722	67473722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	15	67473722	67473722	C	T	SNP	SMAD3	ENST00000327367	human	ensembl	74_37	+1	known	missense	c.802	p.R268C	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD3	HGNC	ENSG00000166949				119	0	0	51	34	40
RHBDF1	0	genome.wustl.edu	37	16	112539	112539	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	16	112539	112539	A	C	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	missense	c.950	p.M317R	1.000	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384				232	0	0	168	11	6.14525
C1QTNF8	0	genome.wustl.edu	37	16	1144784	1144784	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	16	1144784	1144784	G	A	SNP	C1QTNF8	ENST00000328449	human	ensembl	74_37	-1	known	silent	c.139	p.L47	0.016	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF8	HGNC	ENSG00000184471				102	0	0	58	12	17.1429
TPSD1	0	genome.wustl.edu	37	16	1306981	1306981	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	16	1306981	1306981	G	A	SNP	TPSD1	ENST00000211076	human	ensembl	74_37	+1	known	silent	c.438	p.T146	0.534	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	TPSD1	HGNC	ENSG00000095917				85	0	0	55	11	16.6667
MYH11	0	genome.wustl.edu	37	16	15835704	15835704	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	16	15835704	15835704	C	G	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	missense	c.2586	p.Q862H	0.997	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				216	0	0	129	34	20.8589
SRCAP	0	genome.wustl.edu	37	16	30750475	30750475	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	16	30750475	30750475	G	C	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.9114	p.L3038F	0.510	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				120	0	0	52	17	24.6377
ZNF646	0	genome.wustl.edu	37	16	31091735	31091735	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	16	31091735	31091735	G	C	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.4090	p.V1364L	0.387	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				140	0	0	90	23	20.354
TSNAXIP1	0	genome.wustl.edu	37	16	67859121	67859121	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	16	67859121	67859121	G	C	SNP	TSNAXIP1	ENST00000388833	human	ensembl	74_37	+1	known	missense	c.598	p.D200H	0.991	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904				140	0	0	77	14	15.3846
AP1G1	0	genome.wustl.edu	37	16	71823368	71823368	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	16	71823368	71823368	G	A	SNP	AP1G1	ENST00000433195	human	ensembl	74_37	-1	known	silent	c.84	p.I28	1.000	pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G1	HGNC	ENSG00000166747				110	0	0	62	17	21.519
TUBB3	0	genome.wustl.edu	37	16	90001646	90001646	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	16	90001646	90001646	C	G	SNP	TUBB3	ENST00000315491	human	ensembl	74_37	+1	known	missense	c.787	p.L263V	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB3	Uniprot_gn	ENSG00000258947				135	0	0	100	20	16.6667
SERPINF2	0	genome.wustl.edu	37	17	1650662	1650662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	17	1650662	1650662	G	A	SNP	SERPINF2	ENST00000324015	human	ensembl	74_37	+1	known	missense	c.571	p.V191M	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINF2	HGNC	ENSG00000167711				88	0	0	41	18	30.5085
OR3A3	0	genome.wustl.edu	37	17	3324390	3324390	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	17	3324390	3324390	T	G	SNP	OR3A3	ENST00000291231	human	ensembl	74_37	+1	known	missense	c.529	p.F177V	0.884	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR3A3	HGNC	ENSG00000159961				258	0	0	126	26	17.1053
KRTAP4-3	0	genome.wustl.edu	37	17	39323897	39323897	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	17	39323897	39323897	C	T	SNP	KRTAP4-3	ENST00000391356	human	ensembl	74_37	-1	known	silent	c.528	p.P176	0.001	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-3	HGNC	ENSG00000196156				80	0	0	47	10	17.5439
MPP2	0	genome.wustl.edu	37	17	41959741	41959741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	17	41959741	41959741	G	A	SNP	MPP2	ENST00000461854	human	ensembl	74_37	-1	known	missense	c.664	p.R222C	0.739	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP2	HGNC	ENSG00000108852				133	0	0	72	24	25
MRC2	0	genome.wustl.edu	37	17	60758196	60758196	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	17	60758196	60758196	T	A	SNP	MRC2	ENST00000303375	human	ensembl	74_37	+1	known	missense	c.2509	p.Y837N	1.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC2	HGNC	ENSG00000011028				67	0	0	25	11	30.5556
SDK2	0	genome.wustl.edu	37	17	71391442	71391442	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	17	71391442	71391442	C	T	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	silent	c.3444	p.L1148	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188				118	0	0	54	12	18.1818
SPHK1	0	genome.wustl.edu	37	17	74382950	74382950	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	17	74382950	74382950	G	A	SNP	SPHK1	ENST00000323374	human	ensembl	74_37	+1	known	silent	c.696	p.L232	0.010	smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK1	HGNC	ENSG00000176170				228	0	0	107	27	20.1493
EIF4A1	0	genome.wustl.edu	37	17	7481767	7481767	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	17	7481767	7481767	T	C	SNP	EIF4A1	ENST00000293831	human	ensembl	74_37	+1	known	missense	c.1184	p.I395T	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A1	HGNC	ENSG00000161960				147	0	0	57	20	25.974
NPTX1	0	genome.wustl.edu	37	17	78449909	78449909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	17	78449909	78449909	G	A	SNP	NPTX1	ENST00000306773	human	ensembl	74_37	-1	known	missense	c.338	p.S113L	0.993	NULL	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX1	HGNC	ENSG00000171246				80	0	0	59	23	28.0488
CHST9	0	genome.wustl.edu	37	18	24496429	24496429	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	18	24496429	24496429	C	A	SNP	CHST9	ENST00000284224	human	ensembl	74_37	-1	known	missense	c.1126	p.D376Y	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080				198	1	0.502513	73	24	24.7423
FHOD3	0	genome.wustl.edu	37	18	34297852	34297852	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	18	34297852	34297852	T	C	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.2066	p.L689P	1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				173	0	0	80	15	15.7895
SMAD4	0	genome.wustl.edu	37	18	48591940	48591940	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	18	48591940	48591940	C	G	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	missense	c.1103	p.S368C	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				105	0	0	32	12	27.2727
ARHGAP28	0	genome.wustl.edu	37	18	6882152	6882152	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	18	6882152	6882152	T	C	SNP	ARHGAP28	ENST00000400091	human	ensembl	74_37	+1	known	missense	c.1307	p.L436P	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756				160	0	0	39	11	22
RALBP1	0	genome.wustl.edu	37	18	9530858	9530858	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	18	9530858	9530858	G	A	SNP	RALBP1	ENST00000019317	human	ensembl	74_37	+1	known	silent	c.1374	p.E458	0.997	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797				108	0	0	38	5	11.6279
PPP4R1	0	genome.wustl.edu	37	18	9550157	9550157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	18	9550157	9550157	C	T	SNP	PPP4R1	ENST00000400556	human	ensembl	74_37	-1	known	missense	c.2440	p.A814T	0.028	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R1	HGNC	ENSG00000154845				82	0	0	38	19	33.3333
MYO9B	0	genome.wustl.edu	37	19	17298761	17298761	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	17298761	17298761	C	T	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	silent	c.2595	p.D865	0.994	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				22	0	0	6	3	33.3333
ZNF729	0	genome.wustl.edu	37	19	22498125	22498125	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	22498125	22498125	G	T	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.1906	p.A636S	0.063	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				70	0	0	23	5	17.8571
ZBTB7A	0	genome.wustl.edu	37	19	4054833	4054833	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	4054833	4054833	G	A	SNP	ZBTB7A	ENST00000322357	human	ensembl	74_37	-1	known	missense	c.398	p.A133V	0.927	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7A	HGNC	ENSG00000178951				17	0	0	20	8	28.5714
DMRTC2	0	genome.wustl.edu	37	19	42355654	42355654	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	42355654	42355654	C	G	SNP	DMRTC2	ENST00000269945	human	ensembl	74_37	+1	known	missense	c.994	p.P332A	0.998	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTC2	HGNC	ENSG00000142025				73	0	0	31	25	44.6429
EHD2	0	genome.wustl.edu	37	19	48220033	48220033	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	48220033	48220033	T	G	SNP	EHD2	ENST00000263277	human	ensembl	74_37	+1	known	missense	c.164	p.F55C	1.000	superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD2	HGNC	ENSG00000024422				81	0	0	53	43	44.7917
BCAT2	0	genome.wustl.edu	37	19	49303355	49303355	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	49303355	49303355	A	T	SNP	BCAT2	ENST00000316273	human	ensembl	74_37	-1	known	missense	c.414	p.S138R	0.069	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552				140	0	0	107	9	7.75862
PRMT1	0	genome.wustl.edu	37	19	50191446	50191446	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	50191446	50191446	G	C	SNP	PRMT1	ENST00000454376	human	ensembl	74_37	+1	known	missense	c.1060	p.D354H	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT1	HGNC	ENSG00000126457				316	1	0.315457	149	103	40.873
LRRC4B	0	genome.wustl.edu	37	19	51021627	51021627	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	51021627	51021627	G	A	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.1343	p.S448L	0.986	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				103	0	0	86	57	39.8601
NLRP12	0	genome.wustl.edu	37	19	54304558	54304558	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	54304558	54304558	C	T	SNP	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	silent	c.2679	p.L893	0.002	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405				100	0	0	57	26	31.3253
C3	0	genome.wustl.edu	37	19	6712323	6712323	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	6712323	6712323	C	A	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.1214	p.G405V	0.996	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				108	0	0	59	4	6.34921
ADAMTS10	0	genome.wustl.edu	37	19	8668647	8668647	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	8668647	8668647	C	T	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	missense	c.557	p.R186H	0.997	NULL	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				61	0	0	37	10	21.2766
MUC16	0	genome.wustl.edu	37	19	9048395	9048395	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	19	9048395	9048395	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.33236	p.A11079V	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				198	0	0	72	21	22.5806
MAP4K4	0	genome.wustl.edu	37	2	102480317	102480317	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	102480317	102480317	A	G	SNP	MAP4K4	ENST00000324219	human	ensembl	74_37	+1	known	missense	c.1901	p.N634S	1.000	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054				489	0	0	219	49	18.2836
MYO7B	0	genome.wustl.edu	37	2	128388868	128388868	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	128388868	128388868	G	A	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	silent	c.4947	p.L1649	0.963	smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994				68	0	0	43	20	31.746
LRP1B	0	genome.wustl.edu	37	2	141533778	141533778	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	141533778	141533778	A	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.5389	p.L1797V	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				55	0	0	25	4	13.7931
LRP1B	0	genome.wustl.edu	37	2	141598583	141598583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	141598583	141598583	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.5018	p.T1673M	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				137	0	0	49	10	16.9492
MARCH7	0	genome.wustl.edu	37	2	160602345	160602345	+	Silent	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	160602345	160602345	A	C	SNP	MARCH7	ENST00000259050	human	ensembl	74_37	+1	known	silent	c.411	p.T137	0.954	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536				59	0	0	21	4	16
SCN3A	0	genome.wustl.edu	37	2	166019183	166019183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	166019183	166019183	C	T	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	missense	c.850	p.D284N	0.963	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				136	0	0	53	10	15.873
TTN	0	genome.wustl.edu	37	2	179433673	179433673	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	179433673	179433673	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.69482	p.K23161T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				277	0	0	116	18	13.4328
TTN	0	genome.wustl.edu	37	2	179437148	179437148	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	179437148	179437148	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.66007	p.T22003P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				81	0	0	34	7	17.0732
TTN	0	genome.wustl.edu	37	2	179457585	179457585	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	179457585	179457585	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.51557	p.K17186T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				334	0	0	127	24	15.894
MAP2	0	genome.wustl.edu	37	2	210560638	210560638	+	Silent	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	210560638	210560638	G	T	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.3744	p.L1248	0.903	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				112	0	0	57	18	24
ERBB4	0	genome.wustl.edu	37	2	212488720	212488720	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	212488720	212488720	A	C	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.2129	p.L710R	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				103	0	0	40	13	24.5283
ABCB6	0	genome.wustl.edu	37	2	220075736	220075736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	220075736	220075736	C	T	SNP	ABCB6	ENST00000265316	human	ensembl	74_37	-1	known	missense	c.2063	p.R688H	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB6	HGNC	ENSG00000115657				116	0	0	54	17	23.9437
ASIC4	0	genome.wustl.edu	37	2	220397112	220397112	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	220397112	220397112	T	G	SNP	ASIC4	ENST00000347842	human	ensembl	74_37	+1	known	missense	c.1312	p.S438A	1.000	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC4	HGNC	ENSG00000072182				77	0	0	61	14	18.6667
BIRC6	0	genome.wustl.edu	37	2	32673903	32673903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	32673903	32673903	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.4525	p.D1509N	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				119	0	0	27	8	22.8571
LHCGR	0	genome.wustl.edu	37	2	48915121	48915121	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	48915121	48915121	T	G	SNP	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	missense	c.1815	p.K605N	1.000	pfam_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039				226	0	0	76	20	20.8333
SMYD5	0	genome.wustl.edu	37	2	73453032	73453032	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	73453032	73453032	G	T	SNP	SMYD5	ENST00000389501	human	ensembl	74_37	+1	known	missense	c.1215	p.E405D	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SMYD5	HGNC	ENSG00000135632				95	0	0	34	11	24.4444
SEMA4F	0	genome.wustl.edu	37	2	74907203	74907203	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	74907203	74907203	C	T	SNP	SEMA4F	ENST00000357877	human	ensembl	74_37	+1	known	missense	c.2180	p.P727L	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4F	HGNC	ENSG00000135622				152	0	0	61	6	8.95522
LYG1	0	genome.wustl.edu	37	2	99901213	99901213	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	99901213	99901213	G	C	SNP	LYG1	ENST00000308528	human	ensembl	74_37	-1	known	missense	c.404	p.T135S	0.005	superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23	superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG1	HGNC	ENSG00000144214				125	0	0	52	21	28.7671
SNORA71A	0	genome.wustl.edu	37	20	37056007	37056007	+	RNA	SNP	C	C	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	20	37056007	37056007	C	A	SNP	SNORA71A	ENST00000364729	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SNORA71A	HGNC	ENSG00000225091				259	0	0	140	41	22.6519
SNX21	0	genome.wustl.edu	37	20	44469462	44469462	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	20	44469462	44469462	G	A	SNP	SNX21	ENST00000491381	human	ensembl	74_37	+1	known	missense	c.632	p.R211H	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_TPR_1,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX21	HGNC	ENSG00000124104				231	0	0	138	37	21.1429
CASS4	0	genome.wustl.edu	37	20	55027211	55027211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	20	55027211	55027211	G	A	SNP	CASS4	ENST00000360314	human	ensembl	74_37	+1	known	missense	c.979	p.V327I	0.000	NULL	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589				130	0	0	63	8	11.2676
GNAS	0	genome.wustl.edu	37	20	57429490	57429490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	20	57429490	57429490	C	T	SNP	GNAS	ENST00000306120	human	ensembl	74_37	+1	putative	missense	c.980	p.P327L	0.003	NULL	NULL	-	no_errors	GNAS	HGNC	ENSG00000087460				18	0	0	12	4	25
UCKL1	0	genome.wustl.edu	37	20	62577488	62577488	+	RNA	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	20	62577488	62577488	C	T	SNP	UCKL1	ENST00000492660	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.118	-	-	-	no_errors	UCKL1	HGNC	ENSG00000198276				39	0	0	26	13	33.3333
ANKRD20A11P	0	genome.wustl.edu	37	21	15342375	15342375	+	RNA	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	21	15342375	15342375	A	C	SNP	ANKRD20A11P	ENST00000429521	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.649	-	-	-	no_errors	ANKRD20A11P	HGNC	ENSG00000215559				233	0	0	72	20	21.7391
KRTAP10-4	0	genome.wustl.edu	37	21	45993856	45993856	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	21	45993856	45993856	C	G	SNP	KRTAP10-4	ENST00000400374	human	ensembl	74_37	+1	known	missense	c.221	p.P74R	0.124	NULL	NULL	-	no_errors	KRTAP10-4	HGNC	ENSG00000215454				213	0	0	150	34	18.4783
TEKT4P2	0	genome.wustl.edu	37	21	9907198	9907198	+	RNA	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	21	9907198	9907198	C	T	SNP	TEKT4P2	ENST00000416067	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	TEKT4P2	HGNC	ENSG00000188681				19	0	0	16	4	20
CSF2RB	0	genome.wustl.edu	37	22	37334402	37334402	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	22	37334402	37334402	T	C	SNP	CSF2RB	ENST00000262825	human	ensembl	74_37	+1	known	missense	c.2570	p.L857P	0.000	pirsf_IL3_rcpt_beta	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368				489	0	0	243	80	24.7678
SREBF2	0	genome.wustl.edu	37	22	42264622	42264622	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	22	42264622	42264622	G	A	SNP	SREBF2	ENST00000361204	human	ensembl	74_37	+1	known	silent	c.546	p.Q182	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF2	HGNC	ENSG00000198911				127	0	0	75	22	22.6804
TUBGCP6	0	genome.wustl.edu	37	22	50659280	50659280	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	22	50659280	50659280	T	C	SNP	TUBGCP6	ENST00000248846	human	ensembl	74_37	-1	known	missense	c.3508	p.S1170G	0.580	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP6	HGNC	ENSG00000128159				163	1	0.609756	107	36	25.1748
BOC	0	genome.wustl.edu	37	3	112969655	112969655	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	3	112969655	112969655	C	T	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	silent	c.351	p.S117	0.865	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				89	0	0	64	12	15.7895
ZBTB20	0	genome.wustl.edu	37	3	114069258	114069258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	3	114069258	114069258	G	A	SNP	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	missense	c.1667	p.A556V	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				177	0	0	167	29	14.7959
ALG1L2	0	genome.wustl.edu	37	3	129810113	129810113	+	RNA	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	3	129810113	129810113	C	T	SNP	ALG1L2	ENST00000503500	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.366	-	-	-	no_errors	ALG1L2	HGNC	ENSG00000251287				55	0	0	45	4	8.16327
CLRN1	0	genome.wustl.edu	37	3	150690403	150690403	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	3	150690403	150690403	C	T	SNP	CLRN1	ENST00000328863	human	ensembl	74_37	-1	known	silent	c.93	p.P31	0.048	NULL	NULL	-	no_errors	CLRN1	HGNC	ENSG00000163646				184	0	0	81	25	23.5849
LEPREL1	0	genome.wustl.edu	37	3	189675736	189675736	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	3	189675736	189675736	G	C	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	missense	c.2092	p.H698D	0.250	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				130	0	0	55	6	9.83607
RPL15	0	genome.wustl.edu	37	3	23960861	23960861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	3	23960861	23960861	C	T	SNP	RPL15	ENST00000307839	human	ensembl	74_37	+1	known	missense	c.484	p.R162C	1.000	pfam_Ribosomal_L15e,superfamily_Ribosomal_L23/L15e_core_dom	pfam_Ribosomal_L15e,superfamily_Ribosomal_L23/L15e_core_dom	-	no_errors	RPL15	HGNC	ENSG00000174748				72	0	0	33	18	35.2941
DLEC1	0	genome.wustl.edu	37	3	38138170	38138170	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	3	38138170	38138170	A	T	SNP	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	missense	c.2282	p.Y761F	0.644	superfamily_PapD-like	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226				281	0	0	129	21	14
KIF9	0	genome.wustl.edu	37	3	47282462	47282462	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	3	47282462	47282462	T	C	SNP	KIF9	ENST00000265529	human	ensembl	74_37	-1	known	missense	c.1753	p.K585E	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727				251	0	0	91	19	17.2727
RNF123	0	genome.wustl.edu	37	3	49757993	49757993	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	3	49757993	49757993	C	T	SNP	RNF123	ENST00000327697	human	ensembl	74_37	+1	known	missense	c.3550	p.R1184C	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068				119	0	0	67	18	21.1765
IL17RB	0	genome.wustl.edu	37	3	53898872	53898872	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	3	53898872	53898872	G	C	SNP	IL17RB	ENST00000288167	human	ensembl	74_37	+1	known	missense	c.1046	p.C349S	0.023	pfam_SEFIR	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736				160	0	0	49	14	22.2222
PPP3CA	0	genome.wustl.edu	37	4	102004362	102004362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	4	102004362	102004362	G	A	SNP	PPP3CA	ENST00000394854	human	ensembl	74_37	-1	known	missense	c.841	p.H281Y	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814				687	0	0	259	75	22.4551
NDNF	0	genome.wustl.edu	37	4	121957812	121957812	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	4	121957812	121957812	C	G	SNP	NDNF	ENST00000379692	human	ensembl	74_37	-1	known	missense	c.1314	p.R438S	0.967	pfam_DUF2369	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	NDNF	HGNC	ENSG00000173376				322	0	0	111	13	10.4839
KLHL2	0	genome.wustl.edu	37	4	166218834	166218834	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	4	166218834	166218834	A	T	SNP	KLHL2	ENST00000226725	human	ensembl	74_37	+1	known	missense	c.728	p.E243V	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL2	HGNC	ENSG00000109466				122	0	0	47	11	18.9655
CCDC110	0	genome.wustl.edu	37	4	186380716	186380716	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	4	186380716	186380716	T	G	SNP	CCDC110	ENST00000307588	human	ensembl	74_37	-1	known	missense	c.1025	p.K342T	0.513	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491				82	0	0	42	9	17.6471
ZNF876P	0	genome.wustl.edu	37	4	247449	247449	+	RNA	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	4	247449	247449	G	A	SNP	ZNF876P	ENST00000356347	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.699	-	-	-	no_errors	ZNF876P	HGNC	ENSG00000198155				64	0	0	17	7	29.1667
GRXCR1	0	genome.wustl.edu	37	4	42895566	42895566	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	4	42895566	42895566	A	G	SNP	GRXCR1	ENST00000399770	human	ensembl	74_37	+1	known	missense	c.283	p.R95G	0.966	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203				234	0	0	85	19	18.2692
YTHDC1	0	genome.wustl.edu	37	4	69202973	69202973	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	4	69202973	69202973	C	A	SNP	YTHDC1	ENST00000344157	human	ensembl	74_37	-1	known	missense	c.655	p.A219S	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896				36	0	0	16	2	11.1111
IGJ	0	genome.wustl.edu	37	4	71522133	71522133	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	4	71522133	71522133	G	T	SNP	IGJ	ENST00000543780	human	ensembl	74_37	-1	known	nonsense	c.441	p.C147*	0.998	NULL	NULL	-	no_errors	IGJ	HGNC	ENSG00000132465				118	0	0	37	8	17.7778
C4orf36	0	genome.wustl.edu	37	4	87808972	87808972	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	4	87808972	87808972	T	C	SNP	C4orf36	ENST00000295898	human	ensembl	74_37	-1	known	missense	c.295	p.I99V	0.002	NULL	NULL	-	no_errors	C4orf36	HGNC	ENSG00000163633				109	0	0	30	8	21.0526
BMPR1B	0	genome.wustl.edu	37	4	96075778	96075778	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	4	96075778	96075778	A	G	SNP	BMPR1B	ENST00000440890	human	ensembl	74_37	+1	known	missense	c.1553	p.K518R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	BMPR1B	HGNC	ENSG00000138696				129	0	0	40	13	24.5283
PCDHB13	0	genome.wustl.edu	37	5	140594608	140594608	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	5	140594608	140594608	A	C	SNP	PCDHB13	ENST00000341948	human	ensembl	74_37	+1	known	missense	c.913	p.K305Q	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372				292	0	0	72	32	30.7692
TBC1D9B	0	genome.wustl.edu	37	5	179290573	179290573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	5	179290573	179290573	C	T	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.3628	p.E1210K	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				104	0	0	50	14	21.875
RASGEF1C	0	genome.wustl.edu	37	5	179548126	179548126	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	5	179548126	179548126	G	C	SNP	RASGEF1C	ENST00000361132	human	ensembl	74_37	-1	known	missense	c.738	p.S246R	0.929	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090				120	0	0	41	18	30.5085
CDH9	0	genome.wustl.edu	37	5	26903894	26903894	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	5	26903894	26903894	C	A	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.851	p.G284V	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				196	0	0	56	17	23.2877
GDNF	0	genome.wustl.edu	37	5	37816105	37816105	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	5	37816105	37816105	G	C	SNP	GDNF	ENST00000326524	human	ensembl	74_37	-1	known	missense	c.284	p.A95G	0.228	pirsf_GDNF	pfam_TGF-b_C,smart_TGF-b_C,pirsf_GDNF	-	no_errors	GDNF	HGNC	ENSG00000168621				208	0	0	73	24	24.7423
MRPS30	0	genome.wustl.edu	37	5	44809568	44809568	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	5	44809568	44809568	G	A	SNP	MRPS30	ENST00000507110	human	ensembl	74_37	+1	known	silent	c.504	p.E168	0.000	pfam_Ribosomal_L37/S30	pfam_Ribosomal_L37/S30	-	no_errors	MRPS30	HGNC	ENSG00000112996				101	0	0	48	14	22.5806
RASA1	0	genome.wustl.edu	37	5	86645051	86645051	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	5	86645051	86645051	C	G	SNP	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	missense	c.1123	p.L375V	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				188	0	0	58	4	6.45161
GRIK2	0	genome.wustl.edu	37	6	102372513	102372513	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	102372513	102372513	A	C	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	missense	c.1786	p.N596H	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				136	0	0	40	12	23.0769
GPRC6A	0	genome.wustl.edu	37	6	117127751	117127751	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	117127751	117127751	T	A	SNP	GPRC6A	ENST00000310357	human	ensembl	74_37	-1	known	missense	c.1117	p.S373C	0.843	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612				111	0	0	33	10	23.2558
STL	0	genome.wustl.edu	37	6	125232053	125232053	+	RNA	SNP	A	A	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	125232053	125232053	A	T	SNP	STL	ENST00000439075	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-510H23.1	Clone_based_vega_gene	ENSG00000236548				127	0	0	41	12	22.6415
STX7	0	genome.wustl.edu	37	6	132796769	132796769	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	132796769	132796769	C	T	SNP	STX7	ENST00000367941	human	ensembl	74_37	-1	known	missense	c.118	p.G40R	1.000	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX7	HGNC	ENSG00000079950				35	0	0	12	2	14.2857
CCDC28A	0	genome.wustl.edu	37	6	139097404	139097404	+	Silent	SNP	A	A	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	139097404	139097404	A	G	SNP	CCDC28A	ENST00000332797	human	ensembl	74_37	+1	known	silent	c.417	p.P139	1.000	NULL	NULL	-	no_errors	CCDC28A	HGNC	ENSG00000024862				130	0	0	50	11	18.0328
NMBR	0	genome.wustl.edu	37	6	142409567	142409567	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	142409567	142409567	C	T	SNP	NMBR	ENST00000258042	human	ensembl	74_37	-1	known	missense	c.229	p.V77I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NeuroB_rcpt,prints_Bombsn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NMBR	HGNC	ENSG00000135577				76	0	0	40	18	31.0345
UTRN	0	genome.wustl.edu	37	6	145114972	145114972	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	145114972	145114972	C	T	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.8923	p.L2975F	1.000	pfam_EF-hand_dom_typ2,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				204	0	0	53	29	35.3659
ULBP1	0	genome.wustl.edu	37	6	150290350	150290350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	150290350	150290350	C	T	SNP	ULBP1	ENST00000229708	human	ensembl	74_37	+1	known	missense	c.479	p.A160V	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP1	HGNC	ENSG00000111981				144	0	0	74	20	21.2766
FNDC1	0	genome.wustl.edu	37	6	159692384	159692384	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	159692384	159692384	G	T	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.5595	p.E1865D	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				39	0	0	12	6	33.3333
SAPCD1	0	genome.wustl.edu	37	6	31731858	31731858	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	31731858	31731858	A	C	SNP	SAPCD1	ENST00000415669	human	ensembl	74_37	+1	known	missense	c.273	p.L91F	0.008	pfam_APC_dom	pfam_APC_dom	-	no_errors	SAPCD1	HGNC	ENSG00000228727				131	0	0	24	24	50
TUBB2B	0	genome.wustl.edu	37	6	3226001	3226001	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	3226001	3226001	C	G	SNP	TUBB2B	ENST00000259818	human	ensembl	74_37	-1	known	missense	c.322	p.E108Q	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2B	HGNC	ENSG00000137285				40	0	0	18	13	41.9355
LRFN2	0	genome.wustl.edu	37	6	40360102	40360102	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	40360102	40360102	C	T	SNP	LRFN2	ENST00000338305	human	ensembl	74_37	-1	known	silent	c.1950	p.K650	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN2	HGNC	ENSG00000156564				29	0	0	18	6	25
PKHD1	0	genome.wustl.edu	37	6	51609229	51609229	+	Silent	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	51609229	51609229	T	C	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	silent	c.10110	p.V3370	0.997	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				252	0	0	86	26	23.2143
TTK	0	genome.wustl.edu	37	6	80750377	80750377	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	6	80750377	80750377	T	G	SNP	TTK	ENST00000369798	human	ensembl	74_37	+1	known	missense	c.2447	p.L816R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				133	0	0	45	14	23.7288
MET	0	genome.wustl.edu	37	7	116339156	116339156	+	Silent	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	116339156	116339156	G	T	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	silent	c.18	p.V6	0.854	pirsf_Tyr_kinase_HGF/MSP_rcpt	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				111	0	0	72	8	10
TMEM209	0	genome.wustl.edu	37	7	129841736	129841736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	129841736	129841736	G	A	SNP	TMEM209	ENST00000397622	human	ensembl	74_37	-1	known	missense	c.527	p.S176F	0.829	pfam_Cytochrome_B561-rel	pfam_Cytochrome_B561-rel	-	no_errors	TMEM209	HGNC	ENSG00000146842				63	0	0	38	6	13.6364
PLXNA4	0	genome.wustl.edu	37	7	132192789	132192789	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	132192789	132192789	A	C	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.664	p.F222V	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				185	1	0.537634	84	48	36.3636
NOBOX	0	genome.wustl.edu	37	7	144098486	144098486	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	144098486	144098486	G	T	SNP	NOBOX	ENST00000467773	human	ensembl	74_37	-1	known	missense	c.497	p.A166D	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	NOBOX	HGNC	ENSG00000106410				69	0	0	29	13	30.9524
ZNF767	0	genome.wustl.edu	37	7	149318238	149318238	+	RNA	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	149318238	149318238	G	A	SNP	ZNF767	ENST00000472212	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.958	-	-	-	no_errors	ZNF767	HGNC	ENSG00000133624				142	0	0	84	16	16
ITGB8	0	genome.wustl.edu	37	7	20438596	20438596	+	Silent	SNP	A	A	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	20438596	20438596	A	G	SNP	ITGB8	ENST00000222573	human	ensembl	74_37	+1	known	silent	c.1260	p.R420	0.703	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855				86	0	0	38	10	20.8333
ELMO1	0	genome.wustl.edu	37	7	37172752	37172752	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	37172752	37172752	G	T	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.1174	p.Q392K	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				115	0	0	38	24	38.7097
ZNF733P	0	genome.wustl.edu	37	7	62752525	62752525	+	RNA	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	62752525	62752525	C	G	SNP	ZNF733P	ENST00000331425	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF733P	HGNC	ENSG00000185037				33	0	0	23	4	14.8148
PMS2P4	0	genome.wustl.edu	37	7	66764301	66764301	+	RNA	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	66764301	66764301	T	C	SNP	PMS2P4	ENST00000414507	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PMS2P4	HGNC	ENSG00000067601				666	0	0	336	51	13.1783
RSBN1L	0	genome.wustl.edu	37	7	77326150	77326150	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	77326150	77326150	C	T	SNP	RSBN1L	ENST00000334955	human	ensembl	74_37	+1	known	nonsense	c.364	p.Q122*	0.995	NULL	NULL	-	no_errors	RSBN1L	HGNC	ENSG00000187257				67	0	0	52	19	26.7606
KIAA1324L	0	genome.wustl.edu	37	7	86570669	86570669	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	86570669	86570669	T	A	SNP	KIAA1324L	ENST00000297222	human	ensembl	74_37	-1	known	missense	c.20	p.Q7L	0.000	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324L	HGNC	ENSG00000164659				95	0	0	39	6	13.3333
SLC25A13	0	genome.wustl.edu	37	7	95813719	95813719	+	Silent	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	95813719	95813719	G	A	SNP	SLC25A13	ENST00000416240	human	ensembl	74_37	-1	known	silent	c.1050	p.I350	0.773	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864				78	0	0	26	13	33.3333
DCAF13	0	genome.wustl.edu	37	8	104427493	104427493	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	8	104427493	104427493	C	G	SNP	DCAF13	ENST00000297579	human	ensembl	74_37	+1	known	missense	c.275	p.A92G	0.000	NULL	pfam_Sof1,pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				312	0	0	192	51	20.9877
CSMD3	0	genome.wustl.edu	37	8	113650972	113650972	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	8	113650972	113650972	A	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.3479	p.I1160S	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				84	0	0	38	5	11.6279
COL14A1	0	genome.wustl.edu	37	8	121216104	121216104	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	8	121216104	121216104	T	G	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	missense	c.1034	p.I345S	1.000	NULL	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				79	0	0	38	25	39.6825
KLHL38	0	genome.wustl.edu	37	8	124664818	124664818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	8	124664818	124664818	G	A	SNP	KLHL38	ENST00000325995	human	ensembl	74_37	-1	known	missense	c.349	p.P117S	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946				64	0	0	59	13	18.0556
MFSD3	0	genome.wustl.edu	37	8	145736098	145736098	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	8	145736098	145736098	C	G	SNP	MFSD3	ENST00000301327	human	ensembl	74_37	+1	known	missense	c.948	p.I316M	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD3	HGNC	ENSG00000167700				107	0	0	110	28	20.2899
NEFL	0	genome.wustl.edu	37	8	24813352	24813352	+	RNA	SNP	C	C	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	8	24813352	24813352	C	G	SNP	NEFL	ENST00000221169	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725				68	0	0	23	6	20.6897
CSMD1	0	genome.wustl.edu	37	8	2807833	2807833	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	8	2807833	2807833	G	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.10237	p.L3413M	0.972	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				260	0	0	45	17	27.4194
BRF2	0	genome.wustl.edu	37	8	37704431	37704431	+	Silent	SNP	G	G	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	8	37704431	37704431	G	T	SNP	BRF2	ENST00000220659	human	ensembl	74_37	-1	known	silent	c.477	p.L159	0.831	superfamily_Cyclin-like	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221				536	0	0	289	95	24.7396
SLCO5A1	0	genome.wustl.edu	37	8	70674086	70674086	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	8	70674086	70674086	A	C	SNP	SLCO5A1	ENST00000260126	human	ensembl	74_37	-1	known	missense	c.932	p.L311R	0.998	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571				150	0	0	51	16	23.8806
MMP16	0	genome.wustl.edu	37	8	89058908	89058908	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	8	89058908	89058908	T	G	SNP	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	missense	c.1478	p.H493P	1.000	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103				84	0	0	44	8	15.3846
ADAMTS13	0	genome.wustl.edu	37	9	136319694	136319694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	9	136319694	136319694	C	T	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	missense	c.3202	p.L1068F	0.349	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				58	0	0	37	19	33.9286
KCNT1	0	genome.wustl.edu	37	9	138671281	138671281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	9	138671281	138671281	G	A	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	missense	c.2806	p.D936N	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				307	0	0	163	56	25.5708
IFNA10	0	genome.wustl.edu	37	9	21206707	21206707	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	9	21206707	21206707	T	G	SNP	IFNA10	ENST00000357374	human	ensembl	74_37	-1	known	missense	c.390	p.E130D	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA10	HGNC	ENSG00000186803				231	0	0	97	30	23.622
SPATA31D3	0	genome.wustl.edu	37	9	84562837	84562837	+	RNA	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	9	84562837	84562837	C	T	SNP	SPATA31D3	ENST00000334208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA31D3	HGNC	ENSG00000186788				35	0	0	20	3	13.0435
MT-CO1	0	genome.wustl.edu	37	MT	6382	6382	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	MT	6382	6382	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.479	p.G160E	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804				10	0	0	77	5	6.09756
TBC1D8B	0	genome.wustl.edu	37	X	106110048	106110048	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	X	106110048	106110048	T	C	SNP	TBC1D8B	ENST00000357242	human	ensembl	74_37	+1	known	missense	c.2684	p.F895S	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138				100	0	0	23	14	37.8378
TRPC5	0	genome.wustl.edu	37	X	111155847	111155847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	X	111155847	111155847	C	T	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.572	p.R191H	1.000	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				105	0	0	55	31	36.0465
DMD	0	genome.wustl.edu	37	X	32867866	32867866	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	X	32867866	32867866	T	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.165	p.E55D	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pirsf_Dystrophin/utrophin,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				73	0	0	22	16	42.1053
ACRC	0	genome.wustl.edu	37	X	70823607	70823607	+	Silent	SNP	C	C	T			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	X	70823607	70823607	C	T	SNP	ACRC	ENST00000373695	human	ensembl	74_37	+1	known	silent	c.480	p.D160	0.358	NULL	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174				316	0	0	153	14	8.38323
ZCCHC5	0	genome.wustl.edu	37	X	77913793	77913793	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	X	77913793	77913793	T	G	SNP	ZCCHC5	ENST00000321110	human	ensembl	74_37	-1	known	missense	c.125	p.K42T	0.512	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC5	HGNC	ENSG00000179300				35	0	0	3	5	62.5
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037835	10037835	+	RNA	SNP	T	T	C			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	Y	10037835	10037835	T	C	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705				45	0	0	19	4	17.3913
CFHR2	0	genome.wustl.edu	37	1	196927133	196927146	+	Frame_Shift_Del	DEL	GTATCAACTTGAGG	GTATCAACTTGAGG	-			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	GTATCAACTTGAGG	GTATCAACTTGAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	1	196927133	196927146	GTATCAACTTGAGG	-	DEL	CFHR2	ENST00000367415	human	ensembl	74_37	+1	known	frame_shift_del	c.543_556	p.Y182fs	0.000:0.006:0.006:0.001:0.000:0.000:0.018:0.140:0.136:0.007:0.004:0.120:0.139:0.220	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR2	HGNC	ENSG00000080910				256	0	0	88	11	11.1111
MBL1P	0	genome.wustl.edu	37	10	81680656	81680656	+	RNA	DEL	A	A	-			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	10	81680656	81680656	A	-	DEL	MBL1P	ENST00000480805	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MBL1P	HGNC	ENSG00000242600				23	0	0	16	5	23.8095
C15orf27	0	genome.wustl.edu	37	15	76494574	76494600	+	In_Frame_Del	DEL	CATCAGTCAGTATTACAATGGGCCCAG	CATCAGTCAGTATTACAATGGGCCCAG	-			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	CATCAGTCAGTATTACAATGGGCCCAG	CATCAGTCAGTATTACAATGGGCCCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	15	76494574	76494600	CATCAGTCAGTATTACAATGGGCCCAG	-	DEL	C15orf27	ENST00000388942	human	ensembl	74_37	+1	known	in_frame_del	c.990_1016	p.ISQYYNGPS331in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:0.938:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.991:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	C15orf27	HGNC	ENSG00000169758				113	0	0	37	6	13.9535
KYNU	0	genome.wustl.edu	37	2	143798029	143798030	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	2	143798029	143798030	-	A	INS	KYNU	ENST00000264170	human	ensembl	74_37	+1	known	frame_shift_ins	c.1074_1075	p.S360fs	0.924:1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919				142	0	0	34	4	10.5263
ALDH1L1	0	genome.wustl.edu	37	3	125850299	125850312	+	Frame_Shift_Del	DEL	CAGCGTGTAGACGG	CAGCGTGTAGACGG	-			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	CAGCGTGTAGACGG	CAGCGTGTAGACGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	3	125850299	125850312	CAGCGTGTAGACGG	-	DEL	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	frame_shift_del	c.1551_1538	p.A513fs	1.000:1.000:0.974:0.022:0.999:1.000:1.000:1.000:1.000:1.000:1.000:0.971:0.490:0.998	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908				188	0	0	128	21	14.094
RELN	0	genome.wustl.edu	37	7	103629803	103629804	+	In_Frame_Ins	INS	-	-	GCCGCC			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	103629803	103629804	-	GCCGCC	INS	RELN	ENST00000424685	human	ensembl	74_37	-1	known	in_frame_ins	c.1_2	p.0in_frame_insGG	1.000:1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				12	0	0	14	5	26.3158
PMS2P4	0	genome.wustl.edu	37	7	66764300	66764300	+	RNA	DEL	G	G	-			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	7	66764300	66764300	G	-	DEL	PMS2P4	ENST00000414507	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PMS2P4	HGNC	ENSG00000067601				783	0	0	403	49	10.8407
MT-ND5	0	genome.wustl.edu	37	MT	12417	12418	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	MT	12417	12418	-	A	INS	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	frame_shift_ins	c.81_82	p.N29fs	NULL	tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786				12	0	0	85	27	24.1071
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037863	10037863	+	RNA	DEL	C	C	-			TCGA-BR-7958-01A-21D-2340-08	TCGA-BR-7958-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e8458b60-539c-4108-a0ca-142592ed3a0a	d3d47851-0b03-4653-a7c0-79a26d9aae84	Y	10037863	10037863	C	-	DEL	RNA5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705				51	0	0	31	4	11.4286
