Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
UBAP2L	0	genome.wustl.edu	37	1	154233469	154233469	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	1	154233469	154233469	C	T	SNP	UBAP2L	ENST00000361546	human	ensembl	74_37	+1	known	nonsense	c.2680	p.Q894*	1.000	NULL	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC	ENSG00000143569				213	0	0	116	54	31.7647
CFH	0	genome.wustl.edu	37	1	196642297	196642297	+	RNA	SNP	A	A	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	1	196642297	196642297	A	G	SNP	CFH	ENST00000496761	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CFH	HGNC	ENSG00000000971				134	0	0	33	32	49.2308
NEK7	0	genome.wustl.edu	37	1	198247156	198247156	+	Silent	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	1	198247156	198247156	C	T	SNP	NEK7	ENST00000367385	human	ensembl	74_37	+1	known	silent	c.438	p.C146	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK7	HGNC	ENSG00000151414				190	0	0	70	28	28.5714
OR13G1	0	genome.wustl.edu	37	1	247835548	247835548	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	1	247835548	247835548	C	T	SNP	OR13G1	ENST00000359688	human	ensembl	74_37	-1	known	missense	c.796	p.E266K	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR13G1	HGNC	ENSG00000197437				163	0	0	73	39	34.8214
CSF3R	0	genome.wustl.edu	37	1	36939177	36939177	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	1	36939177	36939177	C	T	SNP	CSF3R	ENST00000373103	human	ensembl	74_37	-1	known	missense	c.532	p.V178M	0.792	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF3R	HGNC	ENSG00000119535				92	0	0	51	42	45.1613
CHUK	0	genome.wustl.edu	37	10	101978784	101978784	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	10	101978784	101978784	G	C	SNP	CHUK	ENST00000370397	human	ensembl	74_37	-1	known	missense	c.670	p.H224D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CHUK	HGNC	ENSG00000213341				167	1	0.595238	84	6	6.66667
GBF1	0	genome.wustl.edu	37	10	104119979	104119979	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	10	104119979	104119979	G	A	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	missense	c.1216	p.E406K	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				764	0	0	491	31	5.9387
ACADSB	0	genome.wustl.edu	37	10	124794014	124794014	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	10	124794014	124794014	T	C	SNP	ACADSB	ENST00000358776	human	ensembl	74_37	+1	known	missense	c.185	p.M62T	0.712	pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADSB	HGNC	ENSG00000196177				96	0	0	46	10	17.8571
CDH23	0	genome.wustl.edu	37	10	73437319	73437319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	10	73437319	73437319	G	A	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.1636	p.E546K	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				37	0	0	13	14	51.8519
CASP5	0	genome.wustl.edu	37	11	104872902	104872902	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	11	104872902	104872902	G	C	SNP	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	missense	c.609	p.D203E	0.008	smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757				150	0	0	91	14	13.3333
SLC35F2	0	genome.wustl.edu	37	11	107675446	107675446	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	11	107675446	107675446	A	T	SNP	SLC35F2	ENST00000429869	human	ensembl	74_37	-1	known	missense	c.782	p.I261N	1.000	pfam_SLC35_F1/F2/F6,pfam_DMT,pfam_UAA,pfam_Tpt_PEP_trans_dom	pfam_SLC35_F1/F2/F6,pfam_DMT,pfam_UAA,pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35F2	HGNC	ENSG00000110660				160	0	0	50	29	36.7089
CTR9	0	genome.wustl.edu	37	11	10795681	10795681	+	Silent	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	11	10795681	10795681	G	A	SNP	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	silent	c.2850	p.E950	0.846	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				112	0	0	47	7	12.963
MCAM	0	genome.wustl.edu	37	11	119183094	119183094	+	Silent	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	11	119183094	119183094	G	A	SNP	MCAM	ENST00000264036	human	ensembl	74_37	-1	known	silent	c.906	p.N302	0.003	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MCAM	HGNC	ENSG00000076706				92	0	0	55	33	37.5
PDE3B	0	genome.wustl.edu	37	11	14810696	14810696	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	11	14810696	14810696	C	G	SNP	PDE3B	ENST00000282096	human	ensembl	74_37	+1	known	missense	c.1323	p.S441R	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270				118	0	0	60	8	11.7647
DCHS1	0	genome.wustl.edu	37	11	6651061	6651061	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	11	6651061	6651061	G	C	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.4877	p.S1626C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				118	0	0	88	18	16.9811
INTS4	0	genome.wustl.edu	37	11	77632475	77632475	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	11	77632475	77632475	G	C	SNP	INTS4	ENST00000534064	human	ensembl	74_37	-1	known	missense	c.1675	p.P559A	1.000	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262				159	0	0	65	13	16.6667
TENM4	0	genome.wustl.edu	37	11	78380749	78380749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	11	78380749	78380749	C	T	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.6641	p.R2214H	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				197	0	0	135	25	15.625
CCDC83	0	genome.wustl.edu	37	11	85593611	85593611	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	11	85593611	85593611	T	C	SNP	CCDC83	ENST00000280245	human	ensembl	74_37	+1	known	missense	c.236	p.L79P	0.932	NULL	NULL	-	no_errors	CCDC83	HGNC	ENSG00000150676				193	0	0	92	13	12.381
TRIM49C	0	genome.wustl.edu	37	11	89774338	89774338	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	11	89774338	89774338	A	C	SNP	TRIM49C	ENST00000448984	human	ensembl	74_37	+1	known	missense	c.979	p.S327R	0.001	superfamily_ConA-like_lec_gl_sf,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM49C	HGNC	ENSG00000204449				59	0	0	40	9	18.3673
PRB2	0	genome.wustl.edu	37	12	11545916	11545916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	12	11545916	11545916	G	A	SNP	PRB2	ENST00000389362	human	ensembl	74_37	-1	known	missense	c.1096	p.P366S	0.003	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335				551	0	0	430	23	5.07726
TMEM132D	0	genome.wustl.edu	37	12	129569152	129569152	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	12	129569152	129569152	G	T	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.1539	p.S513R	0.004	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				75	0	0	84	16	16
ATF7IP	0	genome.wustl.edu	37	12	14589055	14589055	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	12	14589055	14589055	G	A	SNP	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	missense	c.1661	p.R554Q	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				59	0	0	37	6	13.9535
ATF7IP	0	genome.wustl.edu	37	12	14614026	14614026	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	12	14614026	14614026	C	A	SNP	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	nonsense	c.2756	p.S919*	0.994	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				99	0	0	41	39	48.75
IRAK4	0	genome.wustl.edu	37	12	44161981	44161981	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	12	44161981	44161981	T	A	SNP	IRAK4	ENST00000448290	human	ensembl	74_37	+1	known	missense	c.67	p.S23T	1.000	pirsf_IL-1_rcpt-assoc_kin4,superfamily_DEATH-like_dom	pirsf_IL-1_rcpt-assoc_kin4,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IRAK4	HGNC	ENSG00000198001				38	0	0	29	4	12.1212
COL2A1	0	genome.wustl.edu	37	12	48387591	48387591	+	Splice_Site	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	12	48387591	48387591	C	T	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	splice_site	c.924+1	e14+1	1.000	-	-	-	no_errors	COL2A1	HGNC	ENSG00000139219				82	0	0	27	25	48.0769
ITGA7	0	genome.wustl.edu	37	12	56082736	56082736	+	Silent	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	12	56082736	56082736	G	A	SNP	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	silent	c.2982	p.C994	0.044	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424				86	0	0	69	9	11.5385
NAV3	0	genome.wustl.edu	37	12	78574822	78574822	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	12	78574822	78574822	T	A	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.5689	p.S1897T	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				125	0	0	60	58	49.1525
MYO16	0	genome.wustl.edu	37	13	109379795	109379795	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	13	109379795	109379795	G	A	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.305	p.R102Q	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				120	0	0	54	18	25
MTUS2	0	genome.wustl.edu	37	13	29933476	29933476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	13	29933476	29933476	C	T	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.3013	p.R1005W	0.994	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				38	0	0	28	8	22.2222
SUPT20H	0	genome.wustl.edu	37	13	37622737	37622737	+	Splice_Site	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	13	37622737	37622737	C	T	SNP	SUPT20H	ENST00000350612	human	ensembl	74_37	-1	known	splice_site	c.4-1	e2-1	1.000	-	-	-	no_errors	SUPT20H	HGNC	ENSG00000102710				88	0	0	31	8	20.5128
LCP1	0	genome.wustl.edu	37	13	46717504	46717504	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	13	46717504	46717504	T	C	SNP	LCP1	ENST00000323076	human	ensembl	74_37	-1	known	missense	c.1289	p.Y430C	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF_hand_dom,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_dom,smart_CH-domain,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	LCP1	HGNC	ENSG00000136167				93	0	0	29	17	36.9565
OR4M1	0	genome.wustl.edu	37	14	20249366	20249366	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	14	20249366	20249366	A	C	SNP	OR4M1	ENST00000315957	human	ensembl	74_37	+1	known	missense	c.885	p.E295D	0.999	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M1	HGNC	ENSG00000176299				149	0	0	75	12	13.7931
OR4M1	0	genome.wustl.edu	37	14	20249373	20249373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	14	20249373	20249373	G	A	SNP	OR4M1	ENST00000315957	human	ensembl	74_37	+1	known	missense	c.892	p.A298T	0.469	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M1	HGNC	ENSG00000176299				139	0	0	70	11	13.5802
SLC24A4	0	genome.wustl.edu	37	14	92915526	92915526	+	Silent	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	14	92915526	92915526	C	T	SNP	SLC24A4	ENST00000532405	human	ensembl	74_37	+1	known	silent	c.846	p.S282	1.000	tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A4	HGNC	ENSG00000140090				76	0	0	38	20	34.4828
DNM1P47	0	genome.wustl.edu	37	15	102292770	102292770	+	RNA	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	15	102292770	102292770	C	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				51	0	0	49	8	14.0351
ARL6IP1	0	genome.wustl.edu	37	16	18809256	18809256	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	16	18809256	18809256	G	C	SNP	ARL6IP1	ENST00000304414	human	ensembl	74_37	-1	known	missense	c.281	p.S94C	1.000	pfam_Reticulon	pfam_Reticulon	-	no_errors	ARL6IP1	HGNC	ENSG00000170540				215	0	0	90	8	8.16327
ARL6IP1	0	genome.wustl.edu	37	16	18809334	18809334	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	16	18809334	18809334	G	C	SNP	ARL6IP1	ENST00000304414	human	ensembl	74_37	-1	known	missense	c.203	p.S68C	1.000	pfam_Reticulon	pfam_Reticulon	-	no_errors	ARL6IP1	HGNC	ENSG00000170540				94	0	0	54	4	6.89655
ARL6IP1	0	genome.wustl.edu	37	16	18809360	18809360	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	16	18809360	18809360	G	C	SNP	ARL6IP1	ENST00000304414	human	ensembl	74_37	-1	known	missense	c.177	p.I59M	1.000	pfam_Reticulon	pfam_Reticulon	-	no_errors	ARL6IP1	HGNC	ENSG00000170540				71	0	0	38	4	9.52381
ARL6IP1	0	genome.wustl.edu	37	16	18810035	18810035	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	16	18810035	18810035	G	C	SNP	ARL6IP1	ENST00000304414	human	ensembl	74_37	-1	known	missense	c.158	p.S53C	1.000	pfam_Reticulon	pfam_Reticulon	-	no_errors	ARL6IP1	HGNC	ENSG00000170540				194	0	0	81	15	15.625
ZNF423	0	genome.wustl.edu	37	16	49670955	49670955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	16	49670955	49670955	G	A	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	missense	c.2108	p.S703L	0.962	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				128	0	0	48	37	43.5294
HYDIN	0	genome.wustl.edu	37	16	70902554	70902554	+	Silent	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	16	70902554	70902554	G	A	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	silent	c.11229	p.P3743	0.055	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				69	0	0	22	19	46.3415
KRT40	0	genome.wustl.edu	37	17	39134527	39134527	+	Silent	SNP	C	C	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	17	39134527	39134527	C	G	SNP	KRT40	ENST00000377755	human	ensembl	74_37	-1	known	silent	c.1218	p.S406	0.001	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT40	HGNC	ENSG00000204889				159	0	0	112	80	41.6667
EVPL	0	genome.wustl.edu	37	17	74003289	74003289	+	Silent	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	17	74003289	74003289	G	A	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	silent	c.5997	p.R1999	0.996	smart_Plectin_repeat	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				203	0	0	82	64	43.8356
RNF213	0	genome.wustl.edu	37	17	78350178	78350178	+	Silent	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	17	78350178	78350178	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	silent	c.13263	p.S4421	0.026	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				214	0	0	59	39	39.7959
CNTROB	0	genome.wustl.edu	37	17	7846798	7846798	+	Silent	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	17	7846798	7846798	G	A	SNP	CNTROB	ENST00000380262	human	ensembl	74_37	+1	known	silent	c.1401	p.Q467	0.999	NULL	NULL	-	no_errors	CNTROB	HGNC	ENSG00000170037				84	0	0	51	16	23.8806
DHRS7C	0	genome.wustl.edu	37	17	9694507	9694507	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	17	9694507	9694507	T	G	SNP	DHRS7C	ENST00000330255	human	ensembl	74_37	-1	known	missense	c.95	p.K32T	1.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7C	HGNC	ENSG00000184544				53	0	0	18	10	35.7143
MAN2B1	0	genome.wustl.edu	37	19	12774255	12774255	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	12774255	12774255	T	C	SNP	MAN2B1	ENST00000456935	human	ensembl	74_37	-1	known	missense	c.785	p.N262S	1.000	pfam_Glyco_hydro_38_N,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774				90	0	0	71	30	29.703
ABHD8	0	genome.wustl.edu	37	19	17412071	17412071	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	17412071	17412071	C	T	SNP	ABHD8	ENST00000247706	human	ensembl	74_37	-1	known	missense	c.355	p.V119M	0.998	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD8	HGNC	ENSG00000127220				58	0	0	49	5	9.25926
ZNF253	0	genome.wustl.edu	37	19	20002700	20002700	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	20002700	20002700	T	G	SNP	ZNF253	ENST00000589717	human	ensembl	74_37	+1	known	missense	c.644	p.L215R	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF253	HGNC	ENSG00000256771				109	0	0	70	4	5.40541
ZNF91	0	genome.wustl.edu	37	19	23542674	23542674	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	23542674	23542674	T	G	SNP	ZNF91	ENST00000300619	human	ensembl	74_37	-1	known	missense	c.3107	p.K1036T	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232				100	0	0	71	20	21.978
POP4	0	genome.wustl.edu	37	19	30101381	30101381	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	30101381	30101381	G	A	SNP	POP4	ENST00000585603	human	ensembl	74_37	+1	known	missense	c.126	p.M42I	0.537	pirsf_RNase_P/MRP_p29-subunit	pfam_RNase_P/MRP_p29,superfamily_Rof/RNase_P-like,smart_RNase_P/MRP_p29,pirsf_RNase_P/MRP_p29-subunit	-	no_errors	POP4	HGNC	ENSG00000105171				21	0	0	22	8	26.6667
ZNF382	0	genome.wustl.edu	37	19	37118304	37118304	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	37118304	37118304	G	C	SNP	ZNF382	ENST00000292928	human	ensembl	74_37	+1	known	missense	c.1505	p.S502T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF382	HGNC	ENSG00000161298				146	0	0	55	15	21.4286
ZNF780A	0	genome.wustl.edu	37	19	40581166	40581166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	40581166	40581166	C	T	SNP	ZNF780A	ENST00000455521	human	ensembl	74_37	-1	known	missense	c.1186	p.G396R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782				355	0	0	198	17	7.90698
PRKCG	0	genome.wustl.edu	37	19	54394999	54394999	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	54394999	54394999	A	T	SNP	PRKCG	ENST00000540413	human	ensembl	74_37	+1	known	missense	c.601	p.I201F	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583				251	0	0	132	37	21.8935
HSD11B1L	0	genome.wustl.edu	37	19	5686455	5686455	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	5686455	5686455	C	T	SNP	HSD11B1L	ENST00000423665	human	ensembl	74_37	+1	known	missense	c.233	p.A78V	0.946	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD11B1L	HGNC	ENSG00000167733				15	0	0	10	5	33.3333
CATSPERD	0	genome.wustl.edu	37	19	5749138	5749138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	5749138	5749138	C	T	SNP	CATSPERD	ENST00000381624	human	ensembl	74_37	+1	known	missense	c.931	p.R311W	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	CATSPERD	HGNC	ENSG00000174898				95	0	0	42	21	33.3333
ZNF134	0	genome.wustl.edu	37	19	58132516	58132516	+	Silent	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	58132516	58132516	G	A	SNP	ZNF134	ENST00000396161	human	ensembl	74_37	+1	known	silent	c.1029	p.P343	0.777	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF134	HGNC	ENSG00000213762				345	1	0.289017	211	30	12.4481
MAP2K7	0	genome.wustl.edu	37	19	7977200	7977200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	7977200	7977200	C	T	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.1270	p.R424C	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				101	0	0	59	28	32.1839
MYO1F	0	genome.wustl.edu	37	19	8618058	8618058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	8618058	8618058	C	T	SNP	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	missense	c.469	p.A157T	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				256	1	0.389105	155	61	28.2407
MUC16	0	genome.wustl.edu	37	19	9086511	9086511	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	19	9086511	9086511	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.5304	p.F1768L	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				113	0	0	51	19	27.1429
ENSG00000273471	0	genome.wustl.edu	37	2	111144370	111144370	+	RNA	SNP	T	T	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	111144370	111144370	T	C	SNP	ENSG00000273471	ENST00000488671	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	RP13-1039J1.4	Clone_based_vega_gene	ENSG00000273471				10	0	0	9	7	43.75
THSD7B	0	genome.wustl.edu	37	2	137852589	137852589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	137852589	137852589	G	A	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	missense	c.1097	p.R366Q	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				101	0	0	46	9	16.3636
LRP1B	0	genome.wustl.edu	37	2	141607766	141607766	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	141607766	141607766	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.4844	p.A1615V	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				157	0	0	50	14	21.875
SCN2A	0	genome.wustl.edu	37	2	166172057	166172057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	166172057	166172057	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.1460	p.S487F	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				116	0	0	60	17	22.0779
KLHL23	0	genome.wustl.edu	37	2	170598014	170598014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	170598014	170598014	G	A	SNP	KLHL23	ENST00000272797	human	ensembl	74_37	+1	known	missense	c.1333	p.E445K	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL23	HGNC	ENSG00000213160				131	0	0	55	30	35.2941
GTF3C3	0	genome.wustl.edu	37	2	197657761	197657761	+	Silent	SNP	T	T	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	197657761	197657761	T	C	SNP	GTF3C3	ENST00000263956	human	ensembl	74_37	-1	known	silent	c.330	p.E110	0.995	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041				49	0	0	26	11	29.7297
OBSL1	0	genome.wustl.edu	37	2	220432115	220432115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	220432115	220432115	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.1717	p.G573R	0.567	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				37	0	0	34	4	10.5263
GIGYF2	0	genome.wustl.edu	37	2	233712181	233712181	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	233712181	233712181	G	A	SNP	GIGYF2	ENST00000373566	human	ensembl	74_37	+1	known	missense	c.3650	p.R1217H	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120				70	0	0	43	16	27.1186
ZNF512	0	genome.wustl.edu	37	2	27830727	27830727	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	27830727	27830727	G	A	SNP	ZNF512	ENST00000355467	human	ensembl	74_37	+1	known	missense	c.952	p.E318K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512	HGNC	ENSG00000243943				73	0	0	51	11	17.7419
HAAO	0	genome.wustl.edu	37	2	42994786	42994786	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	42994786	42994786	C	T	SNP	HAAO	ENST00000294973	human	ensembl	74_37	-1	known	missense	c.731	p.R244Q	0.004	superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met	pfam_3hydroanth_dOase,pfam_Cupin_2,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	-	no_errors	HAAO	HGNC	ENSG00000162882				8	0	0	6	3	33.3333
MSH6	0	genome.wustl.edu	37	2	48025928	48025928	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	48025928	48025928	C	G	SNP	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	missense	c.806	p.T269S	0.011	pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				411	0	0	267	29	9.7973
ETAA1	0	genome.wustl.edu	37	2	67631007	67631007	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	2	67631007	67631007	A	G	SNP	ETAA1	ENST00000272342	human	ensembl	74_37	+1	known	missense	c.1193	p.D398G	0.021	NULL	NULL	-	no_errors	ETAA1	HGNC	ENSG00000143971				190	0	0	51	32	38.5542
SLC24A3	0	genome.wustl.edu	37	20	19677542	19677542	+	Silent	SNP	T	T	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	20	19677542	19677542	T	C	SNP	SLC24A3	ENST00000328041	human	ensembl	74_37	+1	known	silent	c.1593	p.I531	0.014	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A3	HGNC	ENSG00000185052				67	0	0	30	32	51.6129
TGM3	0	genome.wustl.edu	37	20	2312665	2312665	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	20	2312665	2312665	C	T	SNP	TGM3	ENST00000381458	human	ensembl	74_37	+1	known	nonsense	c.1351	p.Q451*	0.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM3	HGNC	ENSG00000125780				173	0	0	90	79	46.7456
ZNF343	0	genome.wustl.edu	37	20	2464884	2464884	+	Silent	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	20	2464884	2464884	G	A	SNP	ZNF343	ENST00000278772	human	ensembl	74_37	-1	known	silent	c.723	p.I241	0.051	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF343	HGNC	ENSG00000088876				144	1	0.689655	58	57	49.5652
ID1	0	genome.wustl.edu	37	20	30193528	30193528	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	20	30193528	30193528	C	T	SNP	ID1	ENST00000376112	human	ensembl	74_37	+1	known	missense	c.338	p.S113F	1.000	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ID1	HGNC	ENSG00000125968				28	0	0	29	8	21.6216
ARFGEF2	0	genome.wustl.edu	37	20	47587742	47587742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	20	47587742	47587742	G	A	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.1276	p.E426K	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				227	0	0	117	55	31.9767
KCNG1	0	genome.wustl.edu	37	20	49626833	49626833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	20	49626833	49626833	C	T	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	missense	c.43	p.A15T	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				87	0	0	62	47	43.1193
NCAM2	0	genome.wustl.edu	37	21	22906924	22906924	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	21	22906924	22906924	A	C	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	missense	c.2349	p.E783D	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				66	0	0	31	7	18.4211
UMODL1	0	genome.wustl.edu	37	21	43531396	43531396	+	Silent	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	21	43531396	43531396	C	T	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	silent	c.2064	p.P688	0.000	NULL	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				23	0	0	15	3	16.6667
BMS1P20	0	genome.wustl.edu	37	22	22664115	22664115	+	RNA	SNP	A	A	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	22	22664115	22664115	A	T	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				174	0	0	94	16	14.5455
ELFN2	0	genome.wustl.edu	37	22	37771510	37771510	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	22	37771510	37771510	G	C	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	missense	c.65	p.A22G	0.166	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				23	0	0	20	9	31.0345
MAPK8IP2	0	genome.wustl.edu	37	22	51045178	51045178	+	Silent	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	22	51045178	51045178	C	T	SNP	MAPK8IP2	ENST00000329492	human	ensembl	74_37	+1	known	silent	c.2214	p.S738	0.876	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP2	HGNC	ENSG00000008735				20	0	0	14	3	17.6471
ZNF35	0	genome.wustl.edu	37	3	44700257	44700257	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	3	44700257	44700257	A	C	SNP	ZNF35	ENST00000396056	human	ensembl	74_37	+1	known	missense	c.402	p.K134N	0.578	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981				128	0	0	40	27	40.2985
GLYCTK	0	genome.wustl.edu	37	3	52327139	52327139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	3	52327139	52327139	G	A	SNP	GLYCTK	ENST00000305690	human	ensembl	74_37	+1	known	missense	c.1093	p.V365M	0.404	NULL	NULL	-	no_errors	GLYCTK	HGNC	ENSG00000168237				59	0	0	38	5	11.6279
FRYL	0	genome.wustl.edu	37	4	48611819	48611819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	4	48611819	48611819	C	T	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.433	p.D145N	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				29	0	0	10	4	28.5714
EVC	0	genome.wustl.edu	37	4	5754776	5754776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	4	5754776	5754776	C	T	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	missense	c.1312	p.R438W	0.488	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				24	0	0	6	6	50
TMPRSS11A	0	genome.wustl.edu	37	4	68780427	68780427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	4	68780427	68780427	C	T	SNP	TMPRSS11A	ENST00000334830	human	ensembl	74_37	-1	known	missense	c.983	p.R328Q	0.991	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_HAT/DESC1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_SEA_dom,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_HAT/DESC1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS11A	HGNC	ENSG00000187054				183	0	0	49	26	34.6667
STPG2	0	genome.wustl.edu	37	4	98893457	98893457	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	4	98893457	98893457	C	T	SNP	STPG2	ENST00000295268	human	ensembl	74_37	-1	known	missense	c.907	p.A303T	0.000	NULL	NULL	-	no_errors	STPG2	HGNC	ENSG00000163116				157	0	0	55	34	38.2022
PCDHB18	0	genome.wustl.edu	37	5	140615744	140615744	+	RNA	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	5	140615744	140615744	G	A	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.810	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				184	0	0	108	72	40
PCDHB15	0	genome.wustl.edu	37	5	140625810	140625810	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	5	140625810	140625810	C	T	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	nonsense	c.664	p.R222*	0.003	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				63	0	0	30	21	41.1765
TRIO	0	genome.wustl.edu	37	5	14387669	14387669	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	5	14387669	14387669	C	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.3693	p.F1231L	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				257	0	0	77	25	24.5098
FNDC1	0	genome.wustl.edu	37	6	159653034	159653034	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	6	159653034	159653034	C	A	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.1490	p.P497H	0.001	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				74	0	0	52	4	7.14286
LRFN2	0	genome.wustl.edu	37	6	40400252	40400252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	6	40400252	40400252	G	A	SNP	LRFN2	ENST00000338305	human	ensembl	74_37	-1	known	missense	c.601	p.R201C	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN2	HGNC	ENSG00000156564				122	0	0	55	51	48.1132
MDN1	0	genome.wustl.edu	37	6	90368581	90368581	+	Silent	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	6	90368581	90368581	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.14769	p.E4923	0.956	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				199	0	0	94	26	21.6667
MOGAT3	0	genome.wustl.edu	37	7	100839531	100839531	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	7	100839531	100839531	G	A	SNP	MOGAT3	ENST00000440203	human	ensembl	74_37	-1	known	missense	c.808	p.R270C	0.033	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384				21	0	0	20	6	23.0769
ZC3HC1	0	genome.wustl.edu	37	7	129663367	129663367	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	7	129663367	129663367	C	G	SNP	ZC3HC1	ENST00000358303	human	ensembl	74_37	-1	known	missense	c.1217	p.C406S	1.000	NULL	pfam_Znf_C3HC-like,pfam_NIPA/Rsm1	-	no_errors	ZC3HC1	HGNC	ENSG00000091732				172	0	0	139	9	6.08108
ATP6V0E2	0	genome.wustl.edu	37	7	149576436	149576436	+	Silent	SNP	C	C	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	7	149576436	149576436	C	G	SNP	ATP6V0E2	ENST00000421974	human	ensembl	74_37	+1	known	silent	c.312	p.L104	0.001	NULL	pfam_ATPase_V0-cplx_e1/e2_su	-	no_errors	ATP6V0E2	HGNC	ENSG00000171130				31	0	0	17	3	15
POM121L12	0	genome.wustl.edu	37	7	53103739	53103739	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	7	53103739	53103739	T	A	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	nonsense	c.375	p.C125*	0.009	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900				112	0	0	72	17	19.1011
BUD31	0	genome.wustl.edu	37	7	99013872	99013872	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	7	99013872	99013872	C	G	SNP	BUD31	ENST00000222969	human	ensembl	74_37	+1	known	missense	c.206	p.A69G	1.000	pfam_G10,prints_G10	pfam_G10,prints_G10	-	no_errors	BUD31	HGNC	ENSG00000106245				201	0	0	88	18	16.9811
RIMS2	0	genome.wustl.edu	37	8	104940099	104940099	+	Silent	SNP	T	T	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	8	104940099	104940099	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.2226	p.P742	1.000	superfamily_C2_dom	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				24	0	0	9	9	50
OXR1	0	genome.wustl.edu	37	8	107715309	107715309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	8	107715309	107715309	C	T	SNP	OXR1	ENST00000442977	human	ensembl	74_37	+1	known	missense	c.854	p.S285F	0.987	NULL	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830				74	0	0	23	9	28.125
POU5F1B	0	genome.wustl.edu	37	8	128428407	128428407	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	8	128428407	128428407	C	G	SNP	POU5F1B	ENST00000391675	human	ensembl	74_37	+1	known	missense	c.296	p.A99G	0.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU5F1B	HGNC	ENSG00000212993				55	0	0	135	21	13.4615
COL22A1	0	genome.wustl.edu	37	8	139697494	139697494	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	8	139697494	139697494	G	T	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.2924	p.P975H	0.258	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				117	0	0	62	26	29.5455
OPLAH	0	genome.wustl.edu	37	8	145111978	145111978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	8	145111978	145111978	C	T	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	missense	c.1579	p.V527M	1.000	pfam_Hydantoinase_A	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				25	0	0	11	9	45
MSR1	0	genome.wustl.edu	37	8	15978102	15978102	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	8	15978102	15978102	T	G	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	missense	c.1047	p.K349N	0.036	superfamily_Srcr_rcpt-rel	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				116	0	0	76	13	14.6067
SFRP1	0	genome.wustl.edu	37	8	41161050	41161050	+	Silent	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	8	41161050	41161050	C	T	SNP	SFRP1	ENST00000220772	human	ensembl	74_37	-1	known	silent	c.552	p.T184	0.000	superfamily_TIMP-like_OB-fold	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP1	HGNC	ENSG00000104332				82	0	0	32	7	17.9487
ANK1	0	genome.wustl.edu	37	8	41547824	41547824	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	8	41547824	41547824	A	G	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.4025	p.F1342S	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				158	0	0	88	27	23.4783
MATN2	0	genome.wustl.edu	37	8	98973669	98973669	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	8	98973669	98973669	G	A	SNP	MATN2	ENST00000254898	human	ensembl	74_37	+1	known	missense	c.869	p.C290Y	0.988	pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561				287	0	0	160	101	38.6973
PAPPA	0	genome.wustl.edu	37	9	118950379	118950379	+	Silent	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	9	118950379	118950379	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	silent	c.1362	p.N454	0.749	smart_Notch_dom	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				96	0	0	70	13	15.6627
ZBTB34	0	genome.wustl.edu	37	9	129641763	129641763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	9	129641763	129641763	C	T	SNP	ZBTB34	ENST00000319119	human	ensembl	74_37	+1	known	missense	c.85	p.L29F	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB34	HGNC	ENSG00000177125				232	0	0	243	27	10
EHMT1	0	genome.wustl.edu	37	9	140728948	140728948	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	9	140728948	140728948	C	T	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	missense	c.3688	p.R1230C	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				132	0	0	155	15	8.82353
NOL6	0	genome.wustl.edu	37	9	33469280	33469280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	9	33469280	33469280	G	A	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	missense	c.787	p.R263C	1.000	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271				212	1	0.469484	171	35	16.9903
KIF27	0	genome.wustl.edu	37	9	86498933	86498933	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	9	86498933	86498933	C	A	SNP	KIF27	ENST00000297814	human	ensembl	74_37	-1	known	missense	c.2240	p.G747V	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115				171	0	0	74	10	11.9048
C9orf3	0	genome.wustl.edu	37	9	97718206	97718206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	9	97718206	97718206	G	A	SNP	C9orf3	ENST00000375315	human	ensembl	74_37	+1	known	missense	c.1781	p.R594Q	0.999	NULL	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold	-	no_errors	C9orf3	HGNC	ENSG00000148120				219	0	0	110	21	16.0305
CTSV	0	genome.wustl.edu	37	9	99800225	99800225	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	9	99800225	99800225	G	T	SNP	CTSV	ENST00000259470	human	ensembl	74_37	-1	known	missense	c.101	p.A34E	0.538	pfam_Prot_inhib_I29,smart_Prot_inhib_I29	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSV	HGNC	ENSG00000136943				159	0	0	107	11	9.32203
ARMCX1	0	genome.wustl.edu	37	X	100808144	100808144	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	X	100808144	100808144	G	T	SNP	ARMCX1	ENST00000372829	human	ensembl	74_37	+1	known	missense	c.231	p.K77N	0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947				35	0	0	18	16	47.0588
OTUD6A	0	genome.wustl.edu	37	X	69282672	69282672	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	X	69282672	69282672	A	T	SNP	OTUD6A	ENST00000338352	human	ensembl	74_37	+1	known	nonsense	c.298	p.R100*	0.001	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD6A	HGNC	ENSG00000189401				22	0	0	8	15	65.2174
PHKA1	0	genome.wustl.edu	37	X	71800871	71800871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	X	71800871	71800871	C	T	SNP	PHKA1	ENST00000373539	human	ensembl	74_37	-1	known	missense	c.3704	p.S1235N	0.997	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177				25	0	0	23	9	28.125
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037835	10037835	+	RNA	SNP	T	T	C			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	Y	10037835	10037835	T	C	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705				44	0	0	29	3	9.375
LOC148709	0	genome.wustl.edu	37	1	202842868	202842870	+	RNA	DEL	ATC	ATC	-			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	1	202842868	202842870	ATC	-	DEL	LOC148709	ENST00000456105	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors	RP11-480I12.7	Clone_based_vega_gene	ENSG00000234996				71	0	0	88	7	7.36842
VCPIP1	0	genome.wustl.edu	37	8	67547081	67547081	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7959-01A-11D-2340-08	TCGA-BR-7959-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f888475-e0fc-48d3-acf3-2aa88cf67228	b003743c-2b6c-4797-938b-63116e82b7fa	8	67547081	67547081	T	-	DEL	VCPIP1	ENST00000310421	human	ensembl	74_37	-1	known	frame_shift_del	c.3324	p.K1108fs	0.991	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073				202	0	0	112	19	14.5038
