Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
RAB13	0	genome.wustl.edu	37	1	153954550	153954550	+	RNA	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	1	153954550	153954550	G	A	SNP	RAB13	ENST00000462680	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.052	-	-	-	no_errors	RAB13	HGNC	ENSG00000143545				31	0	0	30	4	11.7647
HSPA6	0	genome.wustl.edu	37	1	161495404	161495404	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	1	161495404	161495404	T	G	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	missense	c.956	p.V319G	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				18	0	0	21	3	12.5
RPL11	0	genome.wustl.edu	37	1	24018320	24018320	+	Splice_Site	SNP	G	G	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	1	24018320	24018320	G	T	SNP	RPL11	ENST00000374550	human	ensembl	74_37	+1	known	splice_site	c.6+1	e1+1	1.000	-	-	-	no_errors	RPL11	HGNC	ENSG00000142676				64	0	0	64	17	20.9877
PAQR7	0	genome.wustl.edu	37	1	26189730	26189730	+	Silent	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	1	26189730	26189730	G	A	SNP	PAQR7	ENST00000374296	human	ensembl	74_37	-1	known	silent	c.601	p.L201	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR7	HGNC	ENSG00000182749				33	0	0	36	4	10
WDR65	0	genome.wustl.edu	37	1	43647330	43647330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	1	43647330	43647330	C	T	SNP	WDR65	ENST00000528956	human	ensembl	74_37	+1	known	missense	c.283	p.R95W	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR65	HGNC	ENSG00000243710				48	0	0	50	6	10.7143
ATP6V0B	0	genome.wustl.edu	37	1	44442011	44442011	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	1	44442011	44442011	G	T	SNP	ATP6V0B	ENST00000472174	human	ensembl	74_37	+1	known	nonsense	c.238	p.G80*	1.000	pfam_ATPase_proteolipid_c_like_dom,superfamily_ATPase_proteolipid_c_like_dom,prints_ATPase_proteolipid_csu	pfam_ATPase_proteolipid_c_like_dom,superfamily_ATPase_proteolipid_c_like_dom,prints_ATPase_proteolipid_csu	-	no_errors	ATP6V0B	HGNC	ENSG00000117410				32	0	0	31	2	6.06061
PTGFR	0	genome.wustl.edu	37	1	78958499	78958499	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	1	78958499	78958499	C	T	SNP	PTGFR	ENST00000370757	human	ensembl	74_37	+1	known	missense	c.71	p.T24M	0.996	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_PglndnF_rcpt,prints_Prostanoid_rcpt,prints_Thbox_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTGFR	HGNC	ENSG00000122420				36	0	0	38	6	13.6364
RPL5	0	genome.wustl.edu	37	1	93301861	93301861	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	1	93301861	93301861	G	C	SNP	RPL5	ENST00000370321	human	ensembl	74_37	+1	known	missense	c.439	p.D147H	1.000	pfam_Ribosomal_L18/L5,prints_Rbsml_L5_euk/L18_arc	pfam_Ribosomal_L18/L5,prints_Rbsml_L5_euk/L18_arc	-	no_errors	RPL5	HGNC	ENSG00000122406				66	0	0	59	4	6.34921
C10orf90	0	genome.wustl.edu	37	10	128147749	128147749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	10	128147749	128147749	C	T	SNP	C10orf90	ENST00000544758	human	ensembl	74_37	-1	known	missense	c.2048	p.R683H	1.000	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493				41	0	0	40	5	11.1111
DDX21	0	genome.wustl.edu	37	10	70716038	70716038	+	Silent	SNP	A	A	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	10	70716038	70716038	A	G	SNP	DDX21	ENST00000354185	human	ensembl	74_37	+1	known	silent	c.57	p.K19	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732				21	0	0	30	6	16.6667
PRF1	0	genome.wustl.edu	37	10	72360571	72360571	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	10	72360571	72360571	C	G	SNP	PRF1	ENST00000373209	human	ensembl	74_37	-1	known	missense	c.88	p.E30Q	0.987	NULL	pfam_MACPF,pfam_C2_dom,superfamily_C2_dom,smart_MACPF,smart_C2_dom,pfscan_C2_dom	-	no_errors	PRF1	HGNC	ENSG00000180644				21	0	0	17	5	22.7273
SIK3	0	genome.wustl.edu	37	11	116730231	116730231	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	11	116730231	116730231	C	T	SNP	SIK3	ENST00000375300	human	ensembl	74_37	-1	known	missense	c.2371	p.V791M	0.253	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SIK3	HGNC	ENSG00000160584				66	0	0	40	6	13.0435
OR51G2	0	genome.wustl.edu	37	11	4936743	4936743	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	11	4936743	4936743	G	C	SNP	OR51G2	ENST00000322013	human	ensembl	74_37	-1	known	missense	c.151	p.L51V	0.023	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G2	HGNC	ENSG00000176893				43	0	0	55	3	5.17241
OR4C15	0	genome.wustl.edu	37	11	55321938	55321938	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	11	55321938	55321938	G	C	SNP	OR4C15	ENST00000314644	human	ensembl	74_37	+1	known	missense	c.156	p.L52F	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939				53	0	0	51	7	12.069
SHANK2	0	genome.wustl.edu	37	11	70332306	70332306	+	Silent	SNP	G	G	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	11	70332306	70332306	G	C	SNP	SHANK2	ENST00000338508	human	ensembl	74_37	-1	known	silent	c.4095	p.A1365	0.733	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105				34	0	0	46	5	9.80392
PCF11	0	genome.wustl.edu	37	11	82868552	82868552	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	11	82868552	82868552	C	G	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	nonsense	c.71	p.S24*	1.000	superfamily_ENTH_VHS,smart_CID_dom	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				66	0	0	57	25	30.4878
PCF11	0	genome.wustl.edu	37	11	82868584	82868584	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	11	82868584	82868584	C	G	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	missense	c.103	p.P35A	1.000	superfamily_ENTH_VHS,smart_CID_dom	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				72	0	0	70	29	29.2929
PCF11	0	genome.wustl.edu	37	11	82868592	82868592	+	Silent	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	11	82868592	82868592	C	T	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	silent	c.111	p.I37	1.000	superfamily_ENTH_VHS,smart_CID_dom	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				72	0	0	68	31	31.3131
DENND5A	0	genome.wustl.edu	37	11	9225374	9225374	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	11	9225374	9225374	T	G	SNP	DENND5A	ENST00000328194	human	ensembl	74_37	-1	known	missense	c.782	p.K261T	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_PLAT/LH2_dom,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014				61	0	0	63	10	13.6986
OAS1	0	genome.wustl.edu	37	12	113348870	113348870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	12	113348870	113348870	G	A	SNP	OAS1	ENST00000445409	human	ensembl	74_37	+1	known	missense	c.484	p.G162S	0.000	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS1	HGNC	ENSG00000089127				17	0	0	24	30	55.5556
VWF	0	genome.wustl.edu	37	12	6128084	6128084	+	Silent	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	12	6128084	6128084	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	silent	c.4500	p.A1500	0.484	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				14	0	0	21	3	12.5
FREM2	0	genome.wustl.edu	37	13	39264487	39264487	+	Silent	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	13	39264487	39264487	G	A	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	silent	c.3006	p.E1002	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				57	0	0	68	15	18.0723
MIS18BP1	0	genome.wustl.edu	37	14	45693557	45693557	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	14	45693557	45693557	T	C	SNP	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	missense	c.2233	p.T745A	0.008	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				26	0	0	14	6	30
NDUFB1	0	genome.wustl.edu	37	14	92583890	92583890	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	14	92583890	92583890	C	A	SNP	NDUFB1	ENST00000329559	human	ensembl	74_37	-1	known	missense	c.233	p.S78I	0.970	pfam_NADH_UbQ_OxRdtase_MNLL_su	pfam_NADH_UbQ_OxRdtase_MNLL_su	-	no_errors	NDUFB1	HGNC	ENSG00000183648				24	0	0	32	3	8.57143
ALDH1A3	0	genome.wustl.edu	37	15	101447328	101447328	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	15	101447328	101447328	T	G	SNP	ALDH1A3	ENST00000329841	human	ensembl	74_37	+1	known	missense	c.1236	p.I412M	0.989	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254				25	0	0	29	8	21.6216
TRPM7	0	genome.wustl.edu	37	15	50902160	50902160	+	Splice_Site	SNP	T	T	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	15	50902160	50902160	T	A	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	splice_site	c.2281-2	e18-2	1.000	-	-	-	no_errors	TRPM7	HGNC	ENSG00000092439				18	0	0	19	2	9.52381
SMAD3	0	genome.wustl.edu	37	15	67479784	67479784	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	15	67479784	67479784	A	G	SNP	SMAD3	ENST00000327367	human	ensembl	74_37	+1	known	missense	c.1091	p.Y364C	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD3	HGNC	ENSG00000166949				62	0	0	52	11	17.4603
HAPLN3	0	genome.wustl.edu	37	15	89421430	89421430	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	15	89421430	89421430	G	A	SNP	HAPLN3	ENST00000359595	human	ensembl	74_37	-1	known	missense	c.854	p.A285V	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN3	HGNC	ENSG00000140511				101	0	0	130	21	13.9073
SLC7A6	0	genome.wustl.edu	37	16	68330347	68330347	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	16	68330347	68330347	C	A	SNP	SLC7A6	ENST00000219343	human	ensembl	74_37	+1	known	missense	c.1200	p.F400L	0.888	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A6	HGNC	ENSG00000103064				45	0	0	64	8	11.1111
CDH1	0	genome.wustl.edu	37	16	68844172	68844172	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	16	68844172	68844172	G	T	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.760	p.D254Y	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				77	0	0	55	22	28.5714
GAN	0	genome.wustl.edu	37	16	81399030	81399030	+	Silent	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	16	81399030	81399030	G	A	SNP	GAN	ENST00000568107	human	ensembl	74_37	+1	known	silent	c.1449	p.Q483	0.993	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	GAN	HGNC	ENSG00000261609				86	0	0	97	6	5.82524
KRTAP9-3	0	genome.wustl.edu	37	17	39388890	39388890	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	17	39388890	39388890	G	C	SNP	KRTAP9-3	ENST00000411528	human	ensembl	74_37	+1	known	missense	c.137	p.C46S	0.995	NULL	NULL	-	no_errors	KRTAP9-3	HGNC	ENSG00000204873				53	0	0	51	14	21.5385
ALOX15	0	genome.wustl.edu	37	17	4542725	4542725	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	17	4542725	4542725	C	T	SNP	ALOX15	ENST00000545513	human	ensembl	74_37	-1	known	missense	c.403	p.G135S	1.000	superfamily_LipOase_C,pfscan_PLAT/LH2_dom	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15	HGNC	ENSG00000161905				46	0	0	37	5	11.9048
RGS9	0	genome.wustl.edu	37	17	63221598	63221598	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	17	63221598	63221598	T	C	SNP	RGS9	ENST00000262406	human	ensembl	74_37	+1	known	missense	c.1886	p.V629A	0.009	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS9	HGNC	ENSG00000108370				59	0	0	70	4	5.40541
SLC13A5	0	genome.wustl.edu	37	17	6607292	6607292	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	17	6607292	6607292	A	T	SNP	SLC13A5	ENST00000433363	human	ensembl	74_37	-1	known	missense	c.452	p.I151N	0.999	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A5	HGNC	ENSG00000141485				26	0	0	28	6	17.6471
DCC	0	genome.wustl.edu	37	18	50592506	50592506	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	18	50592506	50592506	A	G	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.1231	p.T411A	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				40	0	0	25	10	28.5714
ZNF93	0	genome.wustl.edu	37	19	20045214	20045214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	19	20045214	20045214	G	A	SNP	ZNF93	ENST00000343769	human	ensembl	74_37	+1	known	missense	c.1450	p.E484K	0.207	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF93	HGNC	ENSG00000184635				29	0	0	35	10	22.2222
RBM42	0	genome.wustl.edu	37	19	36128216	36128216	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	19	36128216	36128216	A	G	SNP	RBM42	ENST00000262633	human	ensembl	74_37	+1	known	missense	c.1292	p.D431G	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254				60	0	0	78	9	10.3448
EEF2	0	genome.wustl.edu	37	19	3982022	3982022	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	19	3982022	3982022	T	C	SNP	EEF2	ENST00000309311	human	ensembl	74_37	-1	known	missense	c.820	p.S274G	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658				65	0	0	74	7	8.64198
MAP3K10	0	genome.wustl.edu	37	19	40711185	40711185	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	19	40711185	40711185	C	A	SNP	MAP3K10	ENST00000253055	human	ensembl	74_37	+1	known	missense	c.1170	p.D390E	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758				37	0	0	35	4	10.2564
SPOPL	0	genome.wustl.edu	37	2	139308612	139308612	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	2	139308612	139308612	A	G	SNP	SPOPL	ENST00000280098	human	ensembl	74_37	+1	known	missense	c.340	p.T114A	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pfscan_MATH	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228				33	0	0	23	2	8
SCN7A	0	genome.wustl.edu	37	2	167262220	167262220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	2	167262220	167262220	C	T	SNP	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	missense	c.4919	p.R1640H	0.956	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546				70	0	0	55	18	24.6575
SOCS5	0	genome.wustl.edu	37	2	46985771	46985771	+	Silent	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	2	46985771	46985771	C	T	SNP	SOCS5	ENST00000306503	human	ensembl	74_37	+1	known	silent	c.102	p.S34	0.992	NULL	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS5	HGNC	ENSG00000171150				32	0	0	33	2	5.71429
FRG1B	0	genome.wustl.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	20	29625877	29625877	G	A	SNP	FRG1B	ENST00000278882	human	ensembl	74_37	+1	known	missense	c.121	p.A41T	1.000	pfam_FRG1,superfamily_Actin_cross-linking	pfam_FRG1,superfamily_Actin_cross-linking	-	no_errors	FRG1B	HGNC	ENSG00000149531				51	0	0	54	4	6.89655
MYH9	0	genome.wustl.edu	37	22	36681289	36681289	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	22	36681289	36681289	G	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.5361	p.N1787K	1.000	pfam_Myosin_tail,superfamily_Regulat_G_prot_signal_superfam	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				72	0	0	66	9	12
ELFN2	0	genome.wustl.edu	37	22	37771219	37771219	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	22	37771219	37771219	G	A	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	missense	c.356	p.T119M	1.000	smart_Leu-rich_rpt_typical-subtyp	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				66	0	0	75	6	7.40741
CARD10	0	genome.wustl.edu	37	22	37903838	37903838	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	22	37903838	37903838	G	C	SNP	CARD10	ENST00000251973	human	ensembl	74_37	-1	known	missense	c.1189	p.Q397E	1.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065				106	0	0	101	7	6.48148
HDAC10	0	genome.wustl.edu	37	22	50686482	50686482	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	22	50686482	50686482	C	A	SNP	HDAC10	ENST00000216271	human	ensembl	74_37	-1	known	missense	c.1174	p.A392S	0.000	NULL	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC10	HGNC	ENSG00000100429				36	0	0	22	4	15.3846
ACAD11	0	genome.wustl.edu	37	3	132350306	132350306	+	Silent	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	3	132350306	132350306	C	T	SNP	ACAD11	ENST00000264990	human	ensembl	74_37	-1	known	silent	c.720	p.V240	0.897	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303				25	0	0	34	4	10.5263
MME	0	genome.wustl.edu	37	3	154858007	154858007	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	3	154858007	154858007	G	T	SNP	MME	ENST00000360490	human	ensembl	74_37	+1	known	missense	c.883	p.D295Y	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MME	HGNC	ENSG00000196549				31	0	0	20	2	9.09091
AP3S1	0	genome.wustl.edu	37	5	115238635	115238635	+	Silent	SNP	T	T	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	5	115238635	115238635	T	C	SNP	AP3S1	ENST00000316788	human	ensembl	74_37	+1	known	silent	c.399	p.N133	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP3S1	HGNC	ENSG00000177879				27	0	0	44	6	12
CDHR2	0	genome.wustl.edu	37	5	176017146	176017146	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	5	176017146	176017146	C	T	SNP	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	missense	c.3274	p.R1092W	0.073	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				177	0	0	179	33	15.566
PDE4D	0	genome.wustl.edu	37	5	58273028	58273028	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	5	58273028	58273028	A	G	SNP	PDE4D	ENST00000340635	human	ensembl	74_37	-1	known	missense	c.1697	p.V566A	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448				28	0	0	44	5	10.2041
F2R	0	genome.wustl.edu	37	5	76029103	76029103	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	5	76029103	76029103	T	A	SNP	F2R	ENST00000319211	human	ensembl	74_37	+1	known	missense	c.1053	p.F351L	0.957	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thrmbn_rcpt,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	F2R	HGNC	ENSG00000181104				52	0	0	67	5	6.94444
HLA-A	0	genome.wustl.edu	37	6	29910693	29910693	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	6	29910693	29910693	A	G	SNP	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	missense	c.233	p.Q78R	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				27	0	0	33	6	15.3846
IRF4	0	genome.wustl.edu	37	6	401655	401655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	6	401655	401655	C	T	SNP	IRF4	ENST00000380956	human	ensembl	74_37	+1	known	missense	c.977	p.A326V	1.000	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF4	HGNC	ENSG00000137265				32	0	0	32	4	11.1111
ORC3	0	genome.wustl.edu	37	6	88318928	88318928	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	6	88318928	88318928	G	C	SNP	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	missense	c.694	p.D232H	1.000	pfam_ORC3	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336				25	0	0	37	6	13.9535
PLXNA4	0	genome.wustl.edu	37	7	131883272	131883272	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	7	131883272	131883272	A	C	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.2710	p.L904V	0.011	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				15	0	0	23	3	11.5385
MGAM	0	genome.wustl.edu	37	7	141759274	141759274	+	Silent	SNP	T	T	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	7	141759274	141759274	T	C	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	silent	c.3822	p.D1274	0.847	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				10	0	0	8	6	42.8571
SSPO	0	genome.wustl.edu	37	7	149498906	149498906	+	RNA	SNP	C	C	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	7	149498906	149498906	C	A	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				18	0	0	19	4	17.3913
ZNF572	0	genome.wustl.edu	37	8	125989941	125989941	+	Silent	SNP	C	C	T			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	8	125989941	125989941	C	T	SNP	ZNF572	ENST00000319286	human	ensembl	74_37	+1	known	silent	c.1431	p.F477	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938				81	0	0	104	12	10.3448
PENK	0	genome.wustl.edu	37	8	57354302	57354302	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	8	57354302	57354302	C	A	SNP	PENK	ENST00000314922	human	ensembl	74_37	-1	known	missense	c.333	p.M111I	1.000	NULL	pfam_Opioid_neupept,prints_Proenkphlin_A,prints_Opioid_neupept	-	no_errors	PENK	HGNC	ENSG00000181195				46	0	0	55	7	11.2903
SULF1	0	genome.wustl.edu	37	8	70488242	70488242	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	8	70488242	70488242	G	A	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	missense	c.210	p.M70I	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				20	0	0	15	5	25
CPNE3	0	genome.wustl.edu	37	8	87540876	87540876	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	8	87540876	87540876	T	A	SNP	CPNE3	ENST00000198765	human	ensembl	74_37	+1	known	missense	c.103	p.L35M	0.995	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE3	HGNC	ENSG00000085719				15	0	0	15	2	11.7647
MLLT3	0	genome.wustl.edu	37	9	20346483	20346483	+	Silent	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	9	20346483	20346483	G	A	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	silent	c.1665	p.V555	0.985	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				25	0	0	30	4	11.7647
TOPORS	0	genome.wustl.edu	37	9	32543727	32543727	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	9	32543727	32543727	C	G	SNP	TOPORS	ENST00000360538	human	ensembl	74_37	-1	known	missense	c.796	p.G266R	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TOPORS	HGNC	ENSG00000197579				37	0	0	36	6	14.2857
FMR1	0	genome.wustl.edu	37	X	147007065	147007065	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	X	147007065	147007065	C	G	SNP	FMR1	ENST00000370475	human	ensembl	74_37	+1	known	missense	c.112	p.P38A	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081				41	0	0	39	5	11.3636
CLCN5	0	genome.wustl.edu	37	X	49834605	49834605	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	X	49834605	49834605	C	A	SNP	CLCN5	ENST00000376088	human	ensembl	74_37	+1	known	missense	c.235	p.P79T	1.000	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-5	-	no_errors	CLCN5	HGNC	ENSG00000171365				24	0	0	22	5	18.5185
MAGED1	0	genome.wustl.edu	37	X	51640687	51640687	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	X	51640687	51640687	G	A	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	missense	c.1699	p.E567K	1.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222				52	0	0	45	5	10
ATRX	0	genome.wustl.edu	37	X	76937284	76937284	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	X	76937284	76937284	G	C	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	nonsense	c.3464	p.S1155*	0.997	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				47	0	0	43	3	6.52174
NOTCH2	0	genome.wustl.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-8058-01A-31D-2340-08	TCGA-BR-8058-10A-01D-2340-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd9d9fd4-0aff-4a7d-982f-d87fa38ca5b0	aee74947-0273-4f36-af55-09bc0df09fb1	1	120612003	120612004	GG	-	DEL	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	frame_shift_del	c.18_17	p.P6fs	0.101:0.700	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				10	0	0	15	7	31.8182
