Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AGL	0	genome.wustl.edu	37	1	100345508	100345508	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	100345508	100345508	A	G	SNP	AGL	ENST00000294724	human	ensembl	74_37	+1	known	silent	c.1641	p.Q547	0.992	superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	pfam_AGL/Gdb1,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688				92	0	0	65	10	13.3333
CELSR2	0	genome.wustl.edu	37	1	109801344	109801344	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	109801344	109801344	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.3601	p.P1201S	1.000	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				11	0	0	7	3	30
SYPL2	0	genome.wustl.edu	37	1	110018133	110018133	+	RNA	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	110018133	110018133	G	C	SNP	SYPL2	ENST00000475497	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SYPL2	HGNC	ENSG00000143028				54	0	0	21	6	22.2222
ATXN7L2	0	genome.wustl.edu	37	1	110029157	110029157	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	110029157	110029157	C	G	SNP	ATXN7L2	ENST00000369870	human	ensembl	74_37	+1	known	missense	c.223	p.H75D	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650				58	0	0	29	5	14.7059
GPR61	0	genome.wustl.edu	37	1	110086455	110086455	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	110086455	110086455	G	C	SNP	GPR61	ENST00000404129	human	ensembl	74_37	+1	known	missense	c.811	p.A271P	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR61	HGNC	ENSG00000156097				113	0	0	52	7	11.8644
EXOSC10	0	genome.wustl.edu	37	1	11140856	11140856	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	11140856	11140856	C	A	SNP	EXOSC10	ENST00000376936	human	ensembl	74_37	-1	known	missense	c.1551	p.R517S	1.000	pfam_HRDC_dom,superfamily_HRDC-like,smart_HRDC_dom,pfscan_HRDC_dom	pfam_3'-5'_exonuclease_dom,pfam_Exosome-assoc_fac_Rrp6_N,pfam_HRDC_dom,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_HRDC_dom,pfscan_HRDC_dom	-	no_errors	EXOSC10	HGNC	ENSG00000171824				193	0	0	81	5	5.81395
RSBN1	0	genome.wustl.edu	37	1	114309746	114309746	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	114309746	114309746	T	A	SNP	RSBN1	ENST00000261441	human	ensembl	74_37	-1	known	missense	c.1910	p.D637V	1.000	NULL	NULL	-	no_errors	RSBN1	HGNC	ENSG00000081019				49	0	0	17	4	19.0476
RSBN1	0	genome.wustl.edu	37	1	114309747	114309747	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	114309747	114309747	C	T	SNP	RSBN1	ENST00000261441	human	ensembl	74_37	-1	known	missense	c.1909	p.D637N	1.000	NULL	NULL	-	no_errors	RSBN1	HGNC	ENSG00000081019				49	0	0	17	4	19.0476
NHLH2	0	genome.wustl.edu	37	1	116380625	116380625	+	Silent	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	116380625	116380625	G	T	SNP	NHLH2	ENST00000320238	human	ensembl	74_37	-1	known	silent	c.369	p.I123	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NHLH2	HGNC	ENSG00000177551				51	0	0	13	3	18.75
PHGDH	0	genome.wustl.edu	37	1	120278064	120278064	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	120278064	120278064	G	T	SNP	PHGDH	ENST00000369409	human	ensembl	74_37	+1	known	nonsense	c.790	p.E264*	0.960	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,tigrfam_D-3-Phosphoglycerate_DH	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,tigrfam_D-3-Phosphoglycerate_DH	-	no_errors	PHGDH	HGNC	ENSG00000092621				69	0	0	16	7	30.4348
CPSF3L	0	genome.wustl.edu	37	1	1254740	1254740	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	1254740	1254740	G	C	SNP	CPSF3L	ENST00000540437	human	ensembl	74_37	-1	known	missense	c.383	p.T128S	1.000	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3L	HGNC	ENSG00000127054				361	0	0	119	22	15.6028
TAS1R3	0	genome.wustl.edu	37	1	1268097	1268097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	1268097	1268097	G	A	SNP	TAS1R3	ENST00000339381	human	ensembl	74_37	+1	known	missense	c.1186	p.A396T	0.995	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962				40	0	0	23	5	17.8571
CCNL2	0	genome.wustl.edu	37	1	1322784	1322784	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	1322784	1322784	G	A	SNP	CCNL2	ENST00000400809	human	ensembl	74_37	-1	known	missense	c.1390	p.R464W	1.000	pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978				141	0	0	52	10	16.129
CCNL2	0	genome.wustl.edu	37	1	1334002	1334002	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	1334002	1334002	T	A	SNP	CCNL2	ENST00000400809	human	ensembl	74_37	-1	known	missense	c.338	p.K113M	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978				163	0	0	51	3	5.55556
VPS45	0	genome.wustl.edu	37	1	150040745	150040745	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	150040745	150040745	T	G	SNP	VPS45	ENST00000369130	human	ensembl	74_37	+1	known	missense	c.152	p.L51R	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS45	HGNC	ENSG00000136631				107	0	0	75	13	14.7727
ANP32E	0	genome.wustl.edu	37	1	150201521	150201521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	150201521	150201521	G	A	SNP	ANP32E	ENST00000314136	human	ensembl	74_37	-1	known	missense	c.377	p.T126I	1.000	pfam_Leu-rich_rpt	pfam_Leu-rich_rpt	-	no_errors	ANP32E	HGNC	ENSG00000143401				66	0	0	31	21	40.3846
APH1A	0	genome.wustl.edu	37	1	150240152	150240152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	150240152	150240152	C	T	SNP	APH1A	ENST00000369109	human	ensembl	74_37	-1	known	missense	c.322	p.G108R	1.000	pfam_Aph-1	pfam_Aph-1	-	no_errors	APH1A	HGNC	ENSG00000117362				32	0	0	21	5	19.2308
SEMA6C	0	genome.wustl.edu	37	1	151115071	151115071	+	Silent	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	151115071	151115071	G	C	SNP	SEMA6C	ENST00000368913	human	ensembl	74_37	-1	known	silent	c.27	p.P9	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6C	HGNC	ENSG00000143434				45	0	0	11	3	21.4286
SCNM1	0	genome.wustl.edu	37	1	151138669	151138669	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	151138669	151138669	A	T	SNP	SCNM1	ENST00000368905	human	ensembl	74_37	+1	known	missense	c.41	p.N14I	1.000	NULL	NULL	-	no_errors	SCNM1	HGNC	ENSG00000163156				17	0	0	13	4	23.5294
MRPL9	0	genome.wustl.edu	37	1	151732634	151732634	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	151732634	151732634	T	A	SNP	MRPL9	ENST00000368830	human	ensembl	74_37	-1	known	missense	c.696	p.R232S	1.000	NULL	pfam_Ribosomal_L9_N,superfamily_Ribosomal_L9/RNase_H1_N	-	no_errors	MRPL9	HGNC	ENSG00000143436				93	0	0	51	9	15
HRNR	0	genome.wustl.edu	37	1	152192965	152192965	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	152192965	152192965	C	T	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.1140	p.T380	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				193	0	0	128	17	11.7241
FLG	0	genome.wustl.edu	37	1	152284910	152284910	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	152284910	152284910	G	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.2452	p.Q818E	0.001	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				509	0	0	324	56	14.7368
FLG2	0	genome.wustl.edu	37	1	152327308	152327308	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	152327308	152327308	G	C	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.2954	p.S985C	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				608	0	0	433	62	12.5253
LCE1A	0	genome.wustl.edu	37	1	152800124	152800124	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	152800124	152800124	G	T	SNP	LCE1A	ENST00000335123	human	ensembl	74_37	+1	known	missense	c.176	p.G59V	1.000	NULL	NULL	-	no_errors	LCE1A	HGNC	ENSG00000186844				163	0	0	71	5	6.57895
SLC27A3	0	genome.wustl.edu	37	1	153749026	153749026	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	153749026	153749026	G	T	SNP	SLC27A3	ENST00000368661	human	ensembl	74_37	+1	known	missense	c.841	p.A281S	0.984	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A3	HGNC	ENSG00000143554				209	1	0.47619	101	18	15.1261
HCN3	0	genome.wustl.edu	37	1	155252420	155252420	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	155252420	155252420	C	T	SNP	HCN3	ENST00000368358	human	ensembl	74_37	+1	known	missense	c.497	p.T166M	0.926	pfam_Ion_trans_dom	pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN3	HGNC	ENSG00000143630				104	0	0	55	14	20.2899
PKLR	0	genome.wustl.edu	37	1	155264033	155264033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	155264033	155264033	G	A	SNP	PKLR	ENST00000342741	human	ensembl	74_37	-1	known	missense	c.1109	p.A370V	1.000	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627				102	0	0	37	3	7.5
KIRREL	0	genome.wustl.edu	37	1	158059568	158059568	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	158059568	158059568	T	C	SNP	KIRREL	ENST00000368173	human	ensembl	74_37	+1	known	missense	c.1280	p.V427A	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL	HGNC	ENSG00000183853				134	0	0	45	8	15.0943
CD1A	0	genome.wustl.edu	37	1	158226016	158226016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	158226016	158226016	G	A	SNP	CD1A	ENST00000289429	human	ensembl	74_37	+1	known	missense	c.548	p.C183Y	0.847	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1A	HGNC	ENSG00000158477				161	0	0	73	14	16.092
OR10T2	0	genome.wustl.edu	37	1	158368498	158368498	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	158368498	158368498	G	A	SNP	OR10T2	ENST00000334438	human	ensembl	74_37	-1	known	silent	c.759	p.G253	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10T2	HGNC	ENSG00000186306				74	0	0	43	11	20.3704
VANGL2	0	genome.wustl.edu	37	1	160389262	160389262	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	160389262	160389262	G	A	SNP	VANGL2	ENST00000368061	human	ensembl	74_37	+1	known	silent	c.663	p.S221	0.257	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738				137	0	0	61	5	7.57576
FCRLA	0	genome.wustl.edu	37	1	161682971	161682971	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	161682971	161682971	C	A	SNP	FCRLA	ENST00000367959	human	ensembl	74_37	+1	known	missense	c.950	p.P317H	0.295	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCRLA	HGNC	ENSG00000132185				161	1	0.617284	98	16	14.0351
ATF6	0	genome.wustl.edu	37	1	161789511	161789511	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	161789511	161789511	G	T	SNP	ATF6	ENST00000367942	human	ensembl	74_37	+1	known	missense	c.998	p.G333V	0.316	pfam_bZIP,smart_bZIP,pfscan_bZIP	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6	HGNC	ENSG00000118217				69	0	0	46	8	14.8148
NOS1AP	0	genome.wustl.edu	37	1	162124213	162124213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	162124213	162124213	G	A	SNP	NOS1AP	ENST00000361897	human	ensembl	74_37	+1	known	missense	c.124	p.V42M	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929				49	0	0	39	3	7.14286
UAP1	0	genome.wustl.edu	37	1	162569119	162569119	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	162569119	162569119	A	G	SNP	UAP1	ENST00000271469	human	ensembl	74_37	+1	known	missense	c.1535	p.N512S	0.998	NULL	pfam_UDPGP_trans	-	no_errors	UAP1	HGNC	ENSG00000117143				65	0	0	20	3	13.0435
SPEN	0	genome.wustl.edu	37	1	16257086	16257086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	16257086	16257086	G	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.4351	p.A1451T	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				181	0	0	86	7	7.52688
FAM78B	0	genome.wustl.edu	37	1	166039482	166039482	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	166039482	166039482	T	G	SNP	FAM78B	ENST00000338353	human	ensembl	74_37	-1	known	missense	c.782	p.K261T	1.000	NULL	NULL	-	no_errors	FAM78B	HGNC	ENSG00000188859				209	0	0	79	10	11.236
F5	0	genome.wustl.edu	37	1	169500218	169500218	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	169500218	169500218	C	T	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	missense	c.5014	p.A1672T	1.000	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				165	0	0	96	8	7.69231
TPR	0	genome.wustl.edu	37	1	186300651	186300651	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	186300651	186300651	A	G	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	silent	c.5667	p.D1889	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				116	0	0	45	7	13.4615
TROVE2	0	genome.wustl.edu	37	1	193045117	193045117	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	193045117	193045117	G	T	SNP	TROVE2	ENST00000367441	human	ensembl	74_37	+1	known	nonsense	c.748	p.E250*	1.000	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfscan_TROVE	-	no_errors	TROVE2	HGNC	ENSG00000116747				123	0	0	39	9	18.75
UBR4	0	genome.wustl.edu	37	1	19439224	19439224	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	19439224	19439224	G	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	silent	c.11595	p.G3865	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				436	1	0.228833	155	30	16.2162
CRB1	0	genome.wustl.edu	37	1	197404057	197404057	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	197404057	197404057	A	C	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	missense	c.3064	p.S1022R	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				141	0	0	47	14	22.9508
KIF21B	0	genome.wustl.edu	37	1	200978019	200978019	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	200978019	200978019	C	G	SNP	KIF21B	ENST00000422435	human	ensembl	74_37	-1	known	missense	c.325	p.E109Q	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852				224	0	0	77	14	15.3846
PLA2G2E	0	genome.wustl.edu	37	1	20249189	20249189	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	20249189	20249189	T	G	SNP	PLA2G2E	ENST00000375116	human	ensembl	74_37	-1	known	missense	c.100	p.K34Q	0.707	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	PLA2G2E	HGNC	ENSG00000188784				156	0	0	65	10	13.3333
LRRN2	0	genome.wustl.edu	37	1	204588700	204588700	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	204588700	204588700	C	G	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.421	p.A141P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				307	1	0.324675	87	31	26.2712
KLHDC8A	0	genome.wustl.edu	37	1	205312566	205312566	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	205312566	205312566	G	T	SNP	KLHDC8A	ENST00000367155	human	ensembl	74_37	-1	known	missense	c.167	p.A56D	0.987	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC8A	HGNC	ENSG00000162873				109	0	0	63	9	12.5
SLC26A9	0	genome.wustl.edu	37	1	205892549	205892549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	205892549	205892549	C	T	SNP	SLC26A9	ENST00000340781	human	ensembl	74_37	-1	known	missense	c.1573	p.D525N	1.000	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502				138	0	0	72	9	11.1111
C1orf186	0	genome.wustl.edu	37	1	206241563	206241563	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	206241563	206241563	C	G	SNP	C1orf186	ENST00000331555	human	ensembl	74_37	-1	novel	missense	c.226	p.D76H	0.000	NULL	NULL	-	no_errors	C1orf186	HGNC	ENSG00000196533				204	0	0	64	34	34.6939
CTSE	0	genome.wustl.edu	37	1	206327452	206327452	+	RNA	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	206327452	206327452	G	C	SNP	CTSE	ENST00000486757	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CTSE	HGNC	ENSG00000196188				265	0	0	86	53	38.1295
C1orf116	0	genome.wustl.edu	37	1	207198323	207198323	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	207198323	207198323	C	A	SNP	C1orf116	ENST00000359470	human	ensembl	74_37	-1	known	missense	c.192	p.E64D	0.974	NULL	NULL	-	no_errors	C1orf116	HGNC	ENSG00000182795				113	0	0	32	16	33.3333
SERTAD4	0	genome.wustl.edu	37	1	210415046	210415046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	210415046	210415046	G	A	SNP	SERTAD4	ENST00000367012	human	ensembl	74_37	+1	known	missense	c.435	p.M145I	1.000	pfscan_SERTA	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD4	HGNC	ENSG00000082497				200	0	0	104	11	9.56522
RD3	0	genome.wustl.edu	37	1	211654657	211654657	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	211654657	211654657	G	A	SNP	RD3	ENST00000367002	human	ensembl	74_37	-1	known	missense	c.101	p.T34M	0.995	NULL	NULL	-	no_errors	RD3	HGNC	ENSG00000198570				136	0	0	73	12	14.1176
SLC30A1	0	genome.wustl.edu	37	1	211749121	211749121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	211749121	211749121	G	A	SNP	SLC30A1	ENST00000367001	human	ensembl	74_37	-1	known	missense	c.1133	p.A378V	1.000	pfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A1	HGNC	ENSG00000170385				125	0	0	89	9	9.18367
PTPN14	0	genome.wustl.edu	37	1	214588019	214588019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	214588019	214588019	C	T	SNP	PTPN14	ENST00000366956	human	ensembl	74_37	-1	known	missense	c.395	p.R132Q	0.983	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,prints_Band_41_fam	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104				353	0	0	145	37	20.3297
CENPF	0	genome.wustl.edu	37	1	214818924	214818924	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	214818924	214818924	T	C	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.6011	p.V2004A	0.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				143	0	0	74	8	9.7561
KCTD3	0	genome.wustl.edu	37	1	215793628	215793628	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	215793628	215793628	A	G	SNP	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	missense	c.2116	p.I706V	0.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636				150	0	0	58	7	10.7692
KCTD3	0	genome.wustl.edu	37	1	215793684	215793684	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	215793684	215793684	T	A	SNP	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	missense	c.2172	p.S724R	0.005	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636				143	0	0	62	12	16.2162
USH2A	0	genome.wustl.edu	37	1	215901410	215901410	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	215901410	215901410	T	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.12028	p.T4010A	0.018	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				276	0	0	98	24	19.6721
USH2A	0	genome.wustl.edu	37	1	216246578	216246578	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	216246578	216246578	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.5637	p.V1879	1.000	superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				73	0	0	25	7	21.875
NBPF3	0	genome.wustl.edu	37	1	21800060	21800060	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	21800060	21800060	G	A	SNP	NBPF3	ENST00000318249	human	ensembl	74_37	+1	known	missense	c.922	p.A308T	0.000	NULL	pfam_NBPF_dom	-	no_errors	NBPF3	HGNC	ENSG00000142794				340	0	0	156	33	17.4603
SPATA17	0	genome.wustl.edu	37	1	218036114	218036114	+	Splice_Site	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	218036114	218036114	A	G	SNP	SPATA17	ENST00000366933	human	ensembl	74_37	+1	known	splice_site	c.1006-2	e10-2	1.000	-	-	-	no_errors	SPATA17	HGNC	ENSG00000162814				205	0	0	101	33	24.6269
HSPG2	0	genome.wustl.edu	37	1	22199882	22199882	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	22199882	22199882	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3779	p.G1260A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				318	1	0.31348	100	36	26.4706
HSPG2	0	genome.wustl.edu	37	1	22216485	22216485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	22216485	22216485	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.563	p.R188H	1.000	smart_SEA_dom,pfscan_SEA_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				135	0	0	48	8	14.2857
TAF1A	0	genome.wustl.edu	37	1	222736624	222736624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	222736624	222736624	G	A	SNP	TAF1A	ENST00000350027	human	ensembl	74_37	-1	known	missense	c.976	p.R326C	0.998	pirsf_RNA_pol_I_TAF1A/TAFI48	pirsf_RNA_pol_I_TAF1A/TAFI48	-	no_errors	TAF1A	HGNC	ENSG00000143498				55	0	0	27	8	22.8571
DISP1	0	genome.wustl.edu	37	1	223177310	223177310	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	223177310	223177310	A	G	SNP	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	silent	c.2571	p.K857	0.996	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				127	0	0	49	10	16.9492
GJC2	0	genome.wustl.edu	37	1	228346215	228346215	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	228346215	228346215	C	T	SNP	GJC2	ENST00000366714	human	ensembl	74_37	+1	known	silent	c.756	p.H252	0.598	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJC2	HGNC	ENSG00000198835				194	0	0	59	6	9.23077
OBSCN	0	genome.wustl.edu	37	1	228430947	228430947	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	228430947	228430947	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.2993	p.A998G	0.015	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				48	0	0	9	13	59.0909
OBSCN	0	genome.wustl.edu	37	1	228434292	228434292	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	228434292	228434292	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3821	p.A1274G	0.014	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				199	0	0	31	23	42.5926
OBSCN	0	genome.wustl.edu	37	1	228464274	228464274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	228464274	228464274	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.6344	p.R2115Q	0.895	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				46	0	0	18	6	25
HIST3H2BB	0	genome.wustl.edu	37	1	228646133	228646133	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	228646133	228646133	G	A	SNP	HIST3H2BB	ENST00000369160	human	ensembl	74_37	+1	known	silent	c.303	p.L101	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST3H2BB	HGNC	ENSG00000196890				142	0	0	81	11	11.9565
NUP133	0	genome.wustl.edu	37	1	229580678	229580678	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	229580678	229580678	T	C	SNP	NUP133	ENST00000261396	human	ensembl	74_37	-1	known	missense	c.3317	p.Q1106R	1.000	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248				163	0	0	69	13	15.8537
NUP133	0	genome.wustl.edu	37	1	229593999	229593999	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	229593999	229593999	G	C	SNP	NUP133	ENST00000261396	human	ensembl	74_37	-1	known	nonsense	c.2889	p.Y963*	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248				124	0	0	45	17	27.4194
RYR2	0	genome.wustl.edu	37	1	237777417	237777417	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	237777417	237777417	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	silent	c.4983	p.A1661	0.010	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				72	0	0	47	11	18.9655
RYR2	0	genome.wustl.edu	37	1	237872259	237872259	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	237872259	237872259	T	C	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.9997	p.S3333P	0.192	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				42	0	0	42	5	10.6383
EXO1	0	genome.wustl.edu	37	1	242015657	242015657	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	242015657	242015657	C	T	SNP	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	silent	c.225	p.L75	0.948	pfam_XPG_DNA_repair_N,smart_XPG_DNA_repair_N,prints_XPG/Rad2	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	EXO1	HGNC	ENSG00000174371				175	0	0	149	24	13.8728
SDCCAG8	0	genome.wustl.edu	37	1	243493858	243493858	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	243493858	243493858	A	C	SNP	SDCCAG8	ENST00000366541	human	ensembl	74_37	+1	known	missense	c.1085	p.D362A	1.000	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282				108	0	0	61	7	10.2941
KIF26B	0	genome.wustl.edu	37	1	245852058	245852058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	245852058	245852058	G	A	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	missense	c.5773	p.V1925M	0.186	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				60	0	0	26	5	16.129
CNST	0	genome.wustl.edu	37	1	246810592	246810592	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	246810592	246810592	G	A	SNP	CNST	ENST00000366513	human	ensembl	74_37	+1	known	silent	c.1089	p.L363	0.008	NULL	NULL	-	no_errors	CNST	HGNC	ENSG00000162852				187	0	0	134	15	10.0671
OR14K1	0	genome.wustl.edu	37	1	247902152	247902152	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	247902152	247902152	C	G	SNP	OR14K1	ENST00000283225	human	ensembl	74_37	+1	known	missense	c.236	p.S79C	0.073	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14K1	HGNC	ENSG00000153230				146	0	0	85	10	10.5263
OR11L1	0	genome.wustl.edu	37	1	248004662	248004662	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	248004662	248004662	G	A	SNP	OR11L1	ENST00000355784	human	ensembl	74_37	-1	known	silent	c.537	p.C179	1.000	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11L1	HGNC	ENSG00000197591				172	0	0	117	17	12.6866
OR2T33	0	genome.wustl.edu	37	1	248436456	248436456	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	248436456	248436456	C	A	SNP	OR2T33	ENST00000318021	human	ensembl	74_37	-1	known	missense	c.661	p.A221S	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212				53	0	0	75	10	11.7647
OR2T2	0	genome.wustl.edu	37	1	248617019	248617019	+	Silent	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	248617019	248617019	G	T	SNP	OR2T2	ENST00000342927	human	ensembl	74_37	+1	known	silent	c.921	p.G307	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240				75	0	0	32	16	33.3333
PAQR7	0	genome.wustl.edu	37	1	26189365	26189365	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	26189365	26189365	C	T	SNP	PAQR7	ENST00000374296	human	ensembl	74_37	-1	known	silent	c.966	p.T322	0.007	NULL	pfam_HlyIII-related	-	no_errors	PAQR7	HGNC	ENSG00000182749				172	0	0	48	7	12.7273
ARID1A	0	genome.wustl.edu	37	1	27099914	27099914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	27099914	27099914	G	A	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.3793	p.G1265S	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				74	0	0	41	7	14.5833
ZDHHC18	0	genome.wustl.edu	37	1	27180234	27180234	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	27180234	27180234	G	T	SNP	ZDHHC18	ENST00000374142	human	ensembl	74_37	+1	known	missense	c.1067	p.G356V	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC18	HGNC	ENSG00000204160				355	0	0	182	15	7.61421
SYTL1	0	genome.wustl.edu	37	1	27679867	27679867	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	27679867	27679867	C	T	SNP	SYTL1	ENST00000543823	human	ensembl	74_37	+1	known	silent	c.1437	p.Y479	0.932	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	-	no_errors	SYTL1	HGNC	ENSG00000142765				40	0	0	12	4	25
DNAJC8	0	genome.wustl.edu	37	1	28537141	28537141	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	28537141	28537141	A	G	SNP	DNAJC8	ENST00000263697	human	ensembl	74_37	-1	known	missense	c.245	p.I82T	1.000	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC8	HGNC	ENSG00000126698				143	0	0	77	16	17.2043
HDAC1	0	genome.wustl.edu	37	1	32792620	32792620	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	32792620	32792620	G	A	SNP	HDAC1	ENST00000373548	human	ensembl	74_37	+1	known	missense	c.436	p.E146K	1.000	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478				163	0	0	57	11	16.1765
CSMD2	0	genome.wustl.edu	37	1	34383709	34383709	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	34383709	34383709	T	G	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.906	p.E302D	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				67	0	0	26	3	10.3448
GJB3	0	genome.wustl.edu	37	1	35250931	35250931	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	35250931	35250931	T	A	SNP	GJB3	ENST00000373362	human	ensembl	74_37	+1	known	missense	c.568	p.F190I	1.000	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin31	-	no_errors	GJB3	HGNC	ENSG00000188910				145	0	0	72	10	12.1951
AGO4	0	genome.wustl.edu	37	1	36306953	36306953	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	36306953	36306953	C	T	SNP	AGO4	ENST00000373210	human	ensembl	74_37	+1	known	nonsense	c.1912	p.Q638*	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO4	HGNC	ENSG00000134698				92	0	0	40	12	23.0769
ADPRHL2	0	genome.wustl.edu	37	1	36558733	36558733	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	36558733	36558733	G	A	SNP	ADPRHL2	ENST00000373178	human	ensembl	74_37	+1	known	missense	c.838	p.A280T	1.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	-	no_errors	ADPRHL2	HGNC	ENSG00000116863				111	0	0	51	15	22.7273
EPHA10	0	genome.wustl.edu	37	1	38187344	38187344	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	38187344	38187344	C	T	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	missense	c.2134	p.V712I	0.999	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				52	0	0	26	4	13.3333
SCMH1	0	genome.wustl.edu	37	1	41608726	41608726	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	41608726	41608726	G	T	SNP	SCMH1	ENST00000326197	human	ensembl	74_37	-1	known	missense	c.206	p.P69H	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	SCMH1	HGNC	ENSG00000010803				193	0	0	81	13	13.8298
FOXJ3	0	genome.wustl.edu	37	1	42657010	42657010	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	42657010	42657010	C	A	SNP	FOXJ3	ENST00000361346	human	ensembl	74_37	-1	known	missense	c.1315	p.A439S	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815				139	0	0	53	9	14.5161
CLDN19	0	genome.wustl.edu	37	1	43204117	43204117	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	43204117	43204117	G	A	SNP	CLDN19	ENST00000296387	human	ensembl	74_37	-1	known	silent	c.363	p.A121	0.504	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN19	HGNC	ENSG00000164007				84	0	0	32	4	11.1111
TIE1	0	genome.wustl.edu	37	1	43775113	43775113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	43775113	43775113	C	T	SNP	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	missense	c.1243	p.R415C	0.011	smart_Ig_sub	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056				93	0	0	41	7	14.5833
TESK2	0	genome.wustl.edu	37	1	45810622	45810622	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	45810622	45810622	C	T	SNP	TESK2	ENST00000372086	human	ensembl	74_37	-1	known	missense	c.1606	p.A536T	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759				175	0	0	58	11	15.942
CYP4B1	0	genome.wustl.edu	37	1	47279221	47279221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	47279221	47279221	C	T	SNP	CYP4B1	ENST00000371923	human	ensembl	74_37	+1	known	missense	c.563	p.A188V	0.983	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4B1	HGNC	ENSG00000142973				115	0	0	35	6	14.6341
CYP4A22	0	genome.wustl.edu	37	1	47607809	47607809	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	47607809	47607809	A	C	SNP	CYP4A22	ENST00000371891	human	ensembl	74_37	+1	known	missense	c.412	p.T138P	0.867	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A22	HGNC	ENSG00000162365				114	0	0	47	12	20.339
CDCP2	0	genome.wustl.edu	37	1	54607090	54607090	+	Silent	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	54607090	54607090	G	C	SNP	CDCP2	ENST00000371330	human	ensembl	74_37	-1	novel	silent	c.444	p.V148	0.997	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	-	no_errors	CDCP2	HGNC	ENSG00000157211				63	0	0	20	7	25.9259
FOXD3	0	genome.wustl.edu	37	1	63789265	63789265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	63789265	63789265	G	A	SNP	FOXD3	ENST00000371116	human	ensembl	74_37	+1	known	missense	c.536	p.R179K	1.000	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXD3	HGNC	ENSG00000187140				240	0	0	88	14	13.7255
SGIP1	0	genome.wustl.edu	37	1	67154912	67154912	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	67154912	67154912	C	A	SNP	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	missense	c.1490	p.P497Q	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				502	0	0	206	30	12.7119
DIRAS3	0	genome.wustl.edu	37	1	68512338	68512338	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	68512338	68512338	T	C	SNP	DIRAS3	ENST00000370981	human	ensembl	74_37	-1	known	missense	c.643	p.M215V	0.000	superfamily_P-loop_NTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	DIRAS3	HGNC	ENSG00000162595				211	0	0	74	20	21.2766
CCDC18	0	genome.wustl.edu	37	1	93682304	93682304	+	Splice_Site	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	93682304	93682304	G	T	SNP	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	splice_site	c.2184+1	e13+1	1.000	-	-	-	no_errors	CCDC18	HGNC	ENSG00000122483				39	0	0	43	9	17.3077
DNMBP	0	genome.wustl.edu	37	10	101656136	101656136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	101656136	101656136	C	T	SNP	DNMBP	ENST00000342239	human	ensembl	74_37	-1	known	missense	c.3011	p.G1004D	0.995	NULL	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	DNMBP	HGNC	ENSG00000107554				156	0	0	74	16	17.7778
LZTS2	0	genome.wustl.edu	37	10	102763727	102763727	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	102763727	102763727	G	T	SNP	LZTS2	ENST00000370220	human	ensembl	74_37	+1	known	missense	c.872	p.G291V	0.948	NULL	NULL	-	no_errors	LZTS2	HGNC	ENSG00000107816				108	0	0	34	9	20.9302
GBF1	0	genome.wustl.edu	37	10	104139103	104139103	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	104139103	104139103	G	T	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	missense	c.4554	p.E1518D	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				137	0	0	55	5	8.33333
VWA2	0	genome.wustl.edu	37	10	116048905	116048905	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	116048905	116048905	G	A	SNP	VWA2	ENST00000392982	human	ensembl	74_37	+1	known	silent	c.1779	p.A593	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EG-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816				47	0	0	24	7	22.5806
UPF2	0	genome.wustl.edu	37	10	12001356	12001356	+	Splice_Site	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	12001356	12001356	C	T	SNP	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	splice_site	c.2185-1	e11-1	1.000	-	-	-	no_errors	UPF2	HGNC	ENSG00000151461				71	0	0	60	5	7.69231
EIF3A	0	genome.wustl.edu	37	10	120810115	120810115	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	120810115	120810115	C	T	SNP	EIF3A	ENST00000369144	human	ensembl	74_37	-1	known	silent	c.2391	p.Q797	0.925	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581				389	0	0	192	37	16.1572
DMBT1	0	genome.wustl.edu	37	10	124396684	124396684	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	124396684	124396684	C	T	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	silent	c.6411	p.S2137	0.372	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				138	0	0	47	7	12.963
GPR26	0	genome.wustl.edu	37	10	125426517	125426517	+	Silent	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	125426517	125426517	G	T	SNP	GPR26	ENST00000284674	human	ensembl	74_37	+1	known	silent	c.594	p.V198	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR26	HGNC	ENSG00000154478				32	0	0	15	5	25
C10orf90	0	genome.wustl.edu	37	10	128192844	128192844	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	128192844	128192844	G	A	SNP	C10orf90	ENST00000544758	human	ensembl	74_37	-1	known	silent	c.1216	p.L406	0.000	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493				156	0	0	76	20	20.8333
GLRX3	0	genome.wustl.edu	37	10	131958297	131958297	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	131958297	131958297	T	A	SNP	GLRX3	ENST00000331244	human	ensembl	74_37	+1	known	nonsense	c.240	p.Y80*	1.000	pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	pfam_Glutaredoxin,pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Monothiol_GRX-rel	-	no_errors	GLRX3	HGNC	ENSG00000108010				169	0	0	56	17	23.2877
LRRC27	0	genome.wustl.edu	37	10	134188716	134188716	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	134188716	134188716	A	G	SNP	LRRC27	ENST00000368613	human	ensembl	74_37	+1	known	silent	c.1563	p.G521	0.009	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC27	HGNC	ENSG00000148814				99	0	0	33	9	21.4286
PWWP2B	0	genome.wustl.edu	37	10	134219345	134219345	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	134219345	134219345	G	A	SNP	PWWP2B	ENST00000305233	human	ensembl	74_37	+1	known	silent	c.1341	p.S447	0.114	NULL	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	PWWP2B	HGNC	ENSG00000171813				61	0	0	30	8	21.0526
PWWP2B	0	genome.wustl.edu	37	10	134219558	134219558	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	134219558	134219558	C	T	SNP	PWWP2B	ENST00000305233	human	ensembl	74_37	+1	known	silent	c.1554	p.D518	0.997	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	PWWP2B	HGNC	ENSG00000171813				149	1	0.666667	70	7	9.09091
DCLRE1C	0	genome.wustl.edu	37	10	14951067	14951067	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	14951067	14951067	C	T	SNP	DCLRE1C	ENST00000378278	human	ensembl	74_37	-1	known	silent	c.1419	p.L473	0.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457				67	0	0	60	6	9.09091
ST8SIA6	0	genome.wustl.edu	37	10	17363149	17363149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	17363149	17363149	G	A	SNP	ST8SIA6	ENST00000377602	human	ensembl	74_37	-1	known	missense	c.925	p.L309F	0.003	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA6	HGNC	ENSG00000148488				386	0	0	212	49	18.7739
MLLT10	0	genome.wustl.edu	37	10	21959610	21959610	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	21959610	21959610	C	G	SNP	MLLT10	ENST00000307729	human	ensembl	74_37	+1	known	nonsense	c.1028	p.S343*	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403				125	0	0	50	13	20.6349
MYO3A	0	genome.wustl.edu	37	10	26385597	26385597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	26385597	26385597	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	missense	c.1762	p.G588S	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				137	0	0	59	10	14.4928
APBB1IP	0	genome.wustl.edu	37	10	26785260	26785260	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	26785260	26785260	C	G	SNP	APBB1IP	ENST00000376236	human	ensembl	74_37	+1	known	missense	c.100	p.P34A	0.990	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	APBB1IP	HGNC	ENSG00000077420				121	0	0	62	4	6.06061
NPY4R	0	genome.wustl.edu	37	10	47087134	47087134	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	47087134	47087134	G	A	SNP	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	silent	c.351	p.S117	0.044	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174				305	0	0	157	16	9.24855
FRMPD2	0	genome.wustl.edu	37	10	49447648	49447648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	49447648	49447648	C	T	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	missense	c.788	p.R263H	0.985	NULL	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324				36	0	0	25	5	16.6667
MAPK8	0	genome.wustl.edu	37	10	49609720	49609720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	49609720	49609720	G	A	SNP	MAPK8	ENST00000360332	human	ensembl	74_37	+1	known	missense	c.17	p.R6H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_JNK	-	no_errors	MAPK8	HGNC	ENSG00000107643				69	0	0	38	6	13.6364
CHAT	0	genome.wustl.edu	37	10	50872965	50872965	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	50872965	50872965	T	G	SNP	CHAT	ENST00000337653	human	ensembl	74_37	+1	known	missense	c.2120	p.F707C	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CHAT	HGNC	ENSG00000070748				304	0	0	156	13	7.69231
CHAT	0	genome.wustl.edu	37	10	50872972	50872972	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	50872972	50872972	A	G	SNP	CHAT	ENST00000337653	human	ensembl	74_37	+1	known	silent	c.2127	p.K709	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CHAT	HGNC	ENSG00000070748				284	0	0	143	12	7.74194
FAM21A	0	genome.wustl.edu	37	10	51892678	51892678	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	51892678	51892678	T	A	SNP	FAM21A	ENST00000282633	human	ensembl	74_37	+1	known	missense	c.3999	p.D1333E	0.996	NULL	NULL	-	no_errors	FAM21A	HGNC	ENSG00000099290				96	0	0	61	13	17.5676
PCDH15	0	genome.wustl.edu	37	10	55566740	55566740	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	55566740	55566740	T	C	SNP	PCDH15	ENST00000414778	human	ensembl	74_37	-1	known	missense	c.4645	p.N1549D	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				106	0	0	64	15	18.9873
ZWINT	0	genome.wustl.edu	37	10	58118615	58118615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	58118615	58118615	G	A	SNP	ZWINT	ENST00000373944	human	ensembl	74_37	-1	known	missense	c.574	p.L192F	0.993	NULL	NULL	-	no_errors	ZWINT	HGNC	ENSG00000122952				211	0	0	81	13	13.8298
FAM13C	0	genome.wustl.edu	37	10	61043178	61043178	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	61043178	61043178	C	A	SNP	FAM13C	ENST00000373868	human	ensembl	74_37	-1	known	missense	c.537	p.K179N	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541				249	0	0	111	22	16.5414
HKDC1	0	genome.wustl.edu	37	10	71008477	71008477	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	71008477	71008477	C	T	SNP	HKDC1	ENST00000354624	human	ensembl	74_37	+1	known	silent	c.1563	p.D521	0.999	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510				45	0	0	18	3	14.2857
HKDC1	0	genome.wustl.edu	37	10	71010409	71010409	+	Splice_Site	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	71010409	71010409	G	T	SNP	HKDC1	ENST00000354624	human	ensembl	74_37	+1	known	splice_site	c.1836+1	e12+1	1.000	-	-	-	no_errors	HKDC1	HGNC	ENSG00000156510				162	0	0	103	16	13.4454
TYSND1	0	genome.wustl.edu	37	10	71899686	71899686	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	71899686	71899686	C	T	SNP	TYSND1	ENST00000287078	human	ensembl	74_37	-1	known	silent	c.1695	p.K565	1.000	pirsf_Pept_S1A_Tysnd1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,pirsf_Pept_S1A_Tysnd1	-	no_errors	TYSND1	HGNC	ENSG00000156521				88	0	0	55	7	11.2903
C10orf11	0	genome.wustl.edu	37	10	78084190	78084190	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	78084190	78084190	A	G	SNP	C10orf11	ENST00000372499	human	ensembl	74_37	+1	known	missense	c.464	p.E155G	0.870	NULL	NULL	-	no_errors	C10orf11	HGNC	ENSG00000148655				188	0	0	93	5	5.10204
GRID1	0	genome.wustl.edu	37	10	87966267	87966267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	87966267	87966267	C	T	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	missense	c.374	p.R125H	0.936	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771				117	0	0	42	11	20.7547
ATAD1	0	genome.wustl.edu	37	10	89536099	89536099	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	89536099	89536099	C	A	SNP	ATAD1	ENST00000308448	human	ensembl	74_37	-1	known	missense	c.669	p.L223F	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD1	HGNC	ENSG00000138138				237	0	0	97	6	5.82524
IDE	0	genome.wustl.edu	37	10	94294388	94294388	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	94294388	94294388	A	G	SNP	IDE	ENST00000265986	human	ensembl	74_37	-1	known	silent	c.438	p.H146	1.000	pfam_Pept_M16_N,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	IDE	HGNC	ENSG00000119912				160	0	0	68	18	20.9302
PDE6C	0	genome.wustl.edu	37	10	95381725	95381725	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	95381725	95381725	C	G	SNP	PDE6C	ENST00000371447	human	ensembl	74_37	+1	known	missense	c.760	p.L254V	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464				113	0	0	57	7	10.9375
DYNC2H1	0	genome.wustl.edu	37	11	103075616	103075616	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	103075616	103075616	T	C	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.8377	p.C2793R	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				18	0	0	3	3	50
BACE1	0	genome.wustl.edu	37	11	117161685	117161685	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	117161685	117161685	G	A	SNP	BACE1	ENST00000313005	human	ensembl	74_37	-1	known	silent	c.1023	p.F341	1.000	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Pept_A1_BACE	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Pept_A1_BACE,prints_Pept_A1_BACE1,prints_Aspartic_peptidase	-	no_errors	BACE1	HGNC	ENSG00000186318				239	0	0	99	12	10.8108
UBE4A	0	genome.wustl.edu	37	11	118253471	118253471	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	118253471	118253471	T	C	SNP	UBE4A	ENST00000431736	human	ensembl	74_37	+1	known	missense	c.2198	p.F733S	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4A	HGNC	ENSG00000110344				186	0	0	73	25	25.5102
DPAGT1	0	genome.wustl.edu	37	11	118968584	118968584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	118968584	118968584	G	A	SNP	DPAGT1	ENST00000354202	human	ensembl	74_37	-1	known	missense	c.898	p.P300S	1.000	NULL	pfam_Glycosyl_transferase_4	-	no_errors	DPAGT1	HGNC	ENSG00000172269				191	0	0	82	9	9.89011
RNF26	0	genome.wustl.edu	37	11	119206040	119206040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	119206040	119206040	G	A	SNP	RNF26	ENST00000311413	human	ensembl	74_37	+1	known	missense	c.208	p.E70K	0.984	NULL	pfscan_Znf_RING	-	no_errors	RNF26	HGNC	ENSG00000173456				252	0	0	140	10	6.66667
OR8B4	0	genome.wustl.edu	37	11	124294407	124294407	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	124294407	124294407	G	A	SNP	OR8B4	ENST00000356130	human	ensembl	74_37	-1	known	missense	c.361	p.R121C	1.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B4	HGNC	ENSG00000198657				145	0	0	58	11	15.942
VSIG2	0	genome.wustl.edu	37	11	124619648	124619648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	124619648	124619648	C	T	SNP	VSIG2	ENST00000326621	human	ensembl	74_37	-1	known	missense	c.542	p.R181H	0.004	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG2	HGNC	ENSG00000019102				163	0	0	53	11	17.1875
MUC5B	0	genome.wustl.edu	37	11	1266855	1266855	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	1266855	1266855	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.8754	p.L2918	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				28	0	0	17	4	19.0476
MUC5B	0	genome.wustl.edu	37	11	1271077	1271077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	1271077	1271077	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.12976	p.V4326I	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				347	0	0	160	11	6.43275
MUC5B	0	genome.wustl.edu	37	11	1275541	1275541	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	1275541	1275541	T	C	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.15446	p.V5149A	0.945	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				74	0	0	21	9	30
ABCC8	0	genome.wustl.edu	37	11	17434263	17434263	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	17434263	17434263	G	A	SNP	ABCC8	ENST00000302539	human	ensembl	74_37	-1	known	nonsense	c.2509	p.R837*	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC8	HGNC	ENSG00000006071				40	0	0	12	3	20
USH1C	0	genome.wustl.edu	37	11	17531359	17531359	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	17531359	17531359	C	T	SNP	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	silent	c.1557	p.P519	0.484	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611				94	0	0	32	9	21.9512
USH1C	0	genome.wustl.edu	37	11	17542436	17542436	+	Silent	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	17542436	17542436	T	G	SNP	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	silent	c.1191	p.V397	0.001	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611				601	1	0.166113	252	60	19.2308
HPS5	0	genome.wustl.edu	37	11	18320518	18320518	+	Splice_Site	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	18320518	18320518	C	A	SNP	HPS5	ENST00000349215	human	ensembl	74_37	-1	known	splice_site	c.986-1	e9-1	1.000	-	-	-	no_errors	HPS5	HGNC	ENSG00000110756				147	1	0.675676	64	10	13.5135
SLC17A6	0	genome.wustl.edu	37	11	22363169	22363169	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	22363169	22363169	A	G	SNP	SLC17A6	ENST00000263160	human	ensembl	74_37	+1	known	missense	c.182	p.D61G	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664				94	0	0	31	4	11.4286
KIF18A	0	genome.wustl.edu	37	11	28090826	28090826	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	28090826	28090826	G	C	SNP	KIF18A	ENST00000263181	human	ensembl	74_37	-1	known	missense	c.1570	p.Q524E	0.725	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18A	HGNC	ENSG00000121621				90	0	0	42	10	19.2308
ATHL1	0	genome.wustl.edu	37	11	292553	292553	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	292553	292553	A	C	SNP	ATHL1	ENST00000409548	human	ensembl	74_37	+1	known	missense	c.1034	p.K345T	1.000	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102				68	0	0	22	4	15.3846
DEPDC7	0	genome.wustl.edu	37	11	33054300	33054300	+	Silent	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	33054300	33054300	G	T	SNP	DEPDC7	ENST00000241051	human	ensembl	74_37	+1	known	silent	c.1224	p.L408	1.000	NULL	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC7	HGNC	ENSG00000121690				164	0	0	88	13	12.8713
KIAA1549L	0	genome.wustl.edu	37	11	33564426	33564426	+	Silent	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	33564426	33564426	C	G	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	silent	c.426	p.A142	0.000	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427				115	0	0	51	13	20.3125
SLC35C1	0	genome.wustl.edu	37	11	45832637	45832637	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	45832637	45832637	C	T	SNP	SLC35C1	ENST00000314134	human	ensembl	74_37	+1	known	silent	c.846	p.Y282	0.969	pfam_Tpt_PEP_trans_dom,pfam_UAA	pfam_Tpt_PEP_trans_dom,pfam_UAA,pfam_DMT	-	no_errors	SLC35C1	HGNC	ENSG00000181830				109	0	0	59	11	15.7143
MTCH2	0	genome.wustl.edu	37	11	47656236	47656236	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	47656236	47656236	G	A	SNP	MTCH2	ENST00000302503	human	ensembl	74_37	-1	known	silent	c.357	p.H119	0.856	superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	MTCH2	HGNC	ENSG00000109919				70	0	0	52	6	10.3448
OR51S1	0	genome.wustl.edu	37	11	4870137	4870137	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	4870137	4870137	G	T	SNP	OR51S1	ENST00000322101	human	ensembl	74_37	-1	known	missense	c.302	p.P101H	0.451	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51S1	HGNC	ENSG00000176922				169	0	0	67	19	22.093
OR51G1	0	genome.wustl.edu	37	11	4945149	4945149	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	4945149	4945149	C	T	SNP	OR51G1	ENST00000321961	human	ensembl	74_37	-1	known	missense	c.421	p.A141T	0.012	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G1	HGNC	ENSG00000176879				112	0	0	64	8	11.1111
TRIM48	0	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	55035844	55035844	T	C	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	missense	c.574	p.Y192H	0.183	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244				146	1	0.680272	57	5	8.06452
OR8H3	0	genome.wustl.edu	37	11	55890547	55890547	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	55890547	55890547	A	G	SNP	OR8H3	ENST00000313472	human	ensembl	74_37	+1	known	silent	c.699	p.G233	0.066	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H3	HGNC	ENSG00000181761				165	0	0	96	23	19.3277
OR8K1	0	genome.wustl.edu	37	11	56113850	56113850	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	56113850	56113850	T	G	SNP	OR8K1	ENST00000279783	human	ensembl	74_37	+1	known	missense	c.336	p.I112M	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261				301	0	0	181	27	12.9808
OR5M8	0	genome.wustl.edu	37	11	56258216	56258216	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	56258216	56258216	A	G	SNP	OR5M8	ENST00000327216	human	ensembl	74_37	-1	known	missense	c.631	p.F211L	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M8	HGNC	ENSG00000181371				132	0	0	69	12	14.8148
OR5M10	0	genome.wustl.edu	37	11	56344805	56344805	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	56344805	56344805	A	C	SNP	OR5M10	ENST00000526812	human	ensembl	74_37	-1	known	missense	c.393	p.H131Q	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M10	HGNC	ENSG00000254834				152	0	0	71	21	22.8261
SERPING1	0	genome.wustl.edu	37	11	57373908	57373908	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	57373908	57373908	A	C	SNP	SERPING1	ENST00000278407	human	ensembl	74_37	+1	known	missense	c.917	p.K306T	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPING1	HGNC	ENSG00000149131				211	0	0	87	20	18.6916
LPXN	0	genome.wustl.edu	37	11	58295583	58295583	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	58295583	58295583	C	G	SNP	LPXN	ENST00000528954	human	ensembl	74_37	-1	known	missense	c.839	p.R280P	0.995	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	LPXN	HGNC	ENSG00000110031				213	0	0	73	10	12.0482
RTN3	0	genome.wustl.edu	37	11	63523611	63523611	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	63523611	63523611	G	A	SNP	RTN3	ENST00000377819	human	ensembl	74_37	+1	known	missense	c.3022	p.A1008T	0.452	pfam_Reticulon,pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				175	0	0	67	9	11.8421
CDC42BPG	0	genome.wustl.edu	37	11	64597021	64597021	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	64597021	64597021	C	T	SNP	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	missense	c.3889	p.A1297T	0.024	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219				29	0	0	15	4	21.0526
NAALADL1	0	genome.wustl.edu	37	11	64824895	64824895	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	64824895	64824895	A	C	SNP	NAALADL1	ENST00000358658	human	ensembl	74_37	-1	known	missense	c.551	p.L184R	0.247	pfam_Protease-assoc_domain	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL1	HGNC	ENSG00000168060				108	0	0	44	6	12
SCYL1	0	genome.wustl.edu	37	11	65294436	65294436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	65294436	65294436	C	T	SNP	SCYL1	ENST00000270176	human	ensembl	74_37	+1	known	missense	c.697	p.P233S	1.000	superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	SCYL1	HGNC	ENSG00000142186				55	0	0	22	3	12
CATSPER1	0	genome.wustl.edu	37	11	65793753	65793753	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	65793753	65793753	C	A	SNP	CATSPER1	ENST00000312106	human	ensembl	74_37	-1	known	missense	c.98	p.R33M	0.080	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294				196	0	0	92	6	6.12245
SLC29A2	0	genome.wustl.edu	37	11	66131005	66131005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	66131005	66131005	G	A	SNP	SLC29A2	ENST00000357440	human	ensembl	74_37	-1	known	missense	c.1273	p.H425Y	0.012	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	-	no_errors	SLC29A2	HGNC	ENSG00000174669				37	0	0	14	4	22.2222
CLCF1	0	genome.wustl.edu	37	11	67134968	67134968	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	67134968	67134968	T	C	SNP	CLCF1	ENST00000312438	human	ensembl	74_37	-1	known	missense	c.146	p.Y49C	1.000	superfamily_4_helix_cytokine-like_core	pfam_PRF,pfam_Ciliary_neurotrophic_fac_CNTF,superfamily_4_helix_cytokine-like_core	-	no_errors	CLCF1	HGNC	ENSG00000175505				133	0	0	78	13	14.2857
RPS6KB2	0	genome.wustl.edu	37	11	67201739	67201739	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	67201739	67201739	C	A	SNP	RPS6KB2	ENST00000312629	human	ensembl	74_37	+1	known	missense	c.1040	p.P347H	0.998	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634				472	1	0.211416	229	54	19.0813
PITPNM1	0	genome.wustl.edu	37	11	67267784	67267784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	67267784	67267784	C	T	SNP	PITPNM1	ENST00000356404	human	ensembl	74_37	-1	known	missense	c.749	p.R250H	1.000	pfam_PI_transfer	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697				235	0	0	92	11	10.6796
C11orf24	0	genome.wustl.edu	37	11	68030283	68030283	+	Silent	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	68030283	68030283	A	C	SNP	C11orf24	ENST00000304271	human	ensembl	74_37	-1	known	silent	c.180	p.A60	0.000	NULL	NULL	-	no_errors	C11orf24	HGNC	ENSG00000171067				102	0	0	66	17	20.4819
EPS8L2	0	genome.wustl.edu	37	11	709431	709431	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	709431	709431	C	G	SNP	EPS8L2	ENST00000318562	human	ensembl	74_37	+1	known	missense	c.24	p.S8R	0.992	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106				18	0	0	6	2	25
DHCR7	0	genome.wustl.edu	37	11	71146457	71146457	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	71146457	71146457	G	A	SNP	DHCR7	ENST00000355527	human	ensembl	74_37	-1	known	silent	c.1392	p.A464	0.998	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24	-	no_errors	DHCR7	HGNC	ENSG00000172893				170	0	0	76	5	6.17284
EPS8L2	0	genome.wustl.edu	37	11	720211	720211	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	720211	720211	C	T	SNP	EPS8L2	ENST00000318562	human	ensembl	74_37	+1	known	silent	c.315	p.D105	0.990	pfam_PTB,pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106				74	0	0	27	2	6.89655
OR2AT4	0	genome.wustl.edu	37	11	74799925	74799925	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	74799925	74799925	C	A	SNP	OR2AT4	ENST00000305159	human	ensembl	74_37	-1	known	missense	c.834	p.M278I	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2AT4	HGNC	ENSG00000171561				180	0	0	117	13	10
TALDO1	0	genome.wustl.edu	37	11	759008	759008	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	759008	759008	G	T	SNP	TALDO1	ENST00000319006	human	ensembl	74_37	+1	known	nonsense	c.280	p.E94*	0.995	pfam_Transaldolase,tigrfam_Transaldolase_1	pfam_Transaldolase,tigrfam_Transaldolase_1	-	no_errors	TALDO1	HGNC	ENSG00000177156				293	0	0	104	29	21.8045
TSKU	0	genome.wustl.edu	37	11	76506961	76506961	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	76506961	76506961	C	G	SNP	TSKU	ENST00000333090	human	ensembl	74_37	+1	known	missense	c.301	p.P101A	0.987	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	TSKU	HGNC	ENSG00000182704				102	0	0	65	18	21.6867
NARS2	0	genome.wustl.edu	37	11	78285486	78285486	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	78285486	78285486	G	A	SNP	NARS2	ENST00000281038	human	ensembl	74_37	-1	known	silent	c.48	p.S16	0.014	NULL	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-ligase	-	no_errors	NARS2	HGNC	ENSG00000137513				90	0	0	48	11	18.6441
PICALM	0	genome.wustl.edu	37	11	85733455	85733455	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	85733455	85733455	A	G	SNP	PICALM	ENST00000393346	human	ensembl	74_37	-1	known	missense	c.407	p.V136A	1.000	pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	PICALM	HGNC	ENSG00000073921				170	0	0	89	11	11
SCUBE2	0	genome.wustl.edu	37	11	9090971	9090971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	9090971	9090971	C	T	SNP	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	missense	c.589	p.A197T	1.000	smart_EG-like_dom	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356				204	0	0	73	11	13.0952
FAT3	0	genome.wustl.edu	37	11	92533395	92533395	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	92533395	92533395	T	G	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.7216	p.L2406V	0.882	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				195	0	0	117	21	15.2174
KDM4E	0	genome.wustl.edu	37	11	94759567	94759567	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	94759567	94759567	C	T	SNP	KDM4E	ENST00000450979	human	ensembl	74_37	+1	known	silent	c.846	p.H282	0.952	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,smart_TF_JmjN,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4E	HGNC	ENSG00000235268				70	0	0	42	5	10.6383
SBF2	0	genome.wustl.edu	37	11	9878204	9878204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	9878204	9878204	G	A	SNP	SBF2	ENST00000256190	human	ensembl	74_37	-1	known	missense	c.2164	p.R722C	1.000	pfam_SBF2	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812				417	1	0.239234	172	25	12.6904
ANKS1B	0	genome.wustl.edu	37	12	100169377	100169377	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	100169377	100169377	G	T	SNP	ANKS1B	ENST00000329257	human	ensembl	74_37	-1	known	missense	c.910	p.Q304K	0.993	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046				58	0	0	23	6	20.6897
STYK1	0	genome.wustl.edu	37	12	10777340	10777340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	10777340	10777340	C	T	SNP	STYK1	ENST00000075503	human	ensembl	74_37	-1	known	missense	c.836	p.R279Q	0.013	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STYK1	HGNC	ENSG00000060140				309	1	0.322581	138	29	17.3653
CUX2	0	genome.wustl.edu	37	12	111746230	111746230	+	Splice_Site	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	111746230	111746230	G	T	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	splice_site	c.1159-1	e14-1	1.000	-	-	-	no_errors	CUX2	HGNC	ENSG00000111249				70	0	0	34	5	12.8205
ACAD10	0	genome.wustl.edu	37	12	112182513	112182513	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	112182513	112182513	G	A	SNP	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	nonsense	c.1874	p.W625*	1.000	NULL	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271				158	0	0	73	12	14.1176
PTPN11	0	genome.wustl.edu	37	12	112926847	112926847	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	112926847	112926847	C	T	SNP	PTPN11	ENST00000351677	human	ensembl	74_37	+1	known	silent	c.1467	p.D489	0.887	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN11	HGNC	ENSG00000179295				241	0	0	93	22	19.1304
RPH3A	0	genome.wustl.edu	37	12	113314620	113314620	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	113314620	113314620	C	A	SNP	RPH3A	ENST00000389385	human	ensembl	74_37	+1	known	missense	c.1120	p.P374T	0.990	NULL	pfam_C2_dom,pfam_Znf_FYVE-typ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel,prints_Synaptotagmin,prints_C2_dom	-	no_errors	RPH3A	HGNC	ENSG00000089169				120	0	0	45	7	13.4615
OAS3	0	genome.wustl.edu	37	12	113385824	113385824	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	113385824	113385824	G	C	SNP	OAS3	ENST00000228928	human	ensembl	74_37	+1	known	missense	c.949	p.A317P	0.905	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331				39	0	0	13	5	27.7778
FBXO21	0	genome.wustl.edu	37	12	117612011	117612011	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	117612011	117612011	T	C	SNP	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	missense	c.875	p.Q292R	1.000	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				142	0	0	89	20	18.3486
SUDS3	0	genome.wustl.edu	37	12	118828954	118828954	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	118828954	118828954	C	T	SNP	SUDS3	ENST00000397564	human	ensembl	74_37	+1	known	silent	c.387	p.Y129	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	SUDS3	HGNC	ENSG00000111707				147	0	0	58	13	18.3099
LRP6	0	genome.wustl.edu	37	12	12334193	12334193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	12334193	12334193	C	T	SNP	LRP6	ENST00000261349	human	ensembl	74_37	-1	known	missense	c.1157	p.R386H	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018				212	0	0	120	8	6.25
SLC15A4	0	genome.wustl.edu	37	12	129293469	129293469	+	Silent	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	129293469	129293469	A	C	SNP	SLC15A4	ENST00000266771	human	ensembl	74_37	-1	known	silent	c.1122	p.A374	0.001	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC15A4	HGNC	ENSG00000139370				180	0	0	53	10	15.873
ULK1	0	genome.wustl.edu	37	12	132404023	132404023	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	132404023	132404023	G	A	SNP	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	silent	c.2691	p.A897	0.129	pfam_Ser/Thr_kinase_C,pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169				64	0	0	38	3	7.31707
POLE	0	genome.wustl.edu	37	12	133210934	133210934	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	133210934	133210934	C	A	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	missense	c.5842	p.D1948Y	0.013	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				108	0	0	50	9	15.2542
POLE	0	genome.wustl.edu	37	12	133219578	133219578	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	133219578	133219578	C	T	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	missense	c.4556	p.R1519H	1.000	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				40	0	0	22	7	24.1379
GRIN2B	0	genome.wustl.edu	37	12	13716375	13716375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	13716375	13716375	G	A	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.3797	p.P1266L	0.998	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				151	1	0.657895	55	17	23.6111
GRIN2B	0	genome.wustl.edu	37	12	13768095	13768095	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	13768095	13768095	A	C	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.1607	p.V536G	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				175	0	0	76	22	22.449
GRIN2B	0	genome.wustl.edu	37	12	13906806	13906806	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	13906806	13906806	T	G	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.455	p.Q152P	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				87	0	0	48	11	18.6441
PDE3A	0	genome.wustl.edu	37	12	20833224	20833224	+	RNA	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	20833224	20833224	G	A	SNP	PDE3A	ENST00000544307	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.073	-	-	-	no_errors	PDE3A	HGNC	ENSG00000172572				89	0	0	42	5	10.6383
SLCO1B3	0	genome.wustl.edu	37	12	21220293	21220293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	21220293	21220293	C	T	SNP	SLCO1B3	ENST00000553473	human	ensembl	74_37	+1	known	missense	c.1906	p.H636Y	0.427	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700				16	0	0	5	3	37.5
LINC00477	0	genome.wustl.edu	37	12	24736768	24736768	+	RNA	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	24736768	24736768	C	A	SNP	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				119	1	0.833333	46	15	24.5902
KRAS	0	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	25398284	25398284	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.35	p.G12D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				25	0	0	19	5	20.8333
LRRK2	0	genome.wustl.edu	37	12	40645122	40645122	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	40645122	40645122	G	A	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	nonsense	c.1047	p.W349*	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				64	0	0	33	4	10.8108
KDM5A	0	genome.wustl.edu	37	12	432830	432830	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	432830	432830	G	A	SNP	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	missense	c.2086	p.R696W	1.000	pfam_Znf_C5HC2	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614				173	0	0	64	19	22.8916
NELL2	0	genome.wustl.edu	37	12	45209887	45209887	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	45209887	45209887	T	C	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	missense	c.367	p.T123A	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613				206	0	0	106	12	10.1695
ANO6	0	genome.wustl.edu	37	12	45741846	45741846	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	45741846	45741846	C	T	SNP	ANO6	ENST00000425752	human	ensembl	74_37	+1	known	silent	c.381	p.H127	0.971	NULL	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119				107	0	0	79	7	8.13953
ZNF641	0	genome.wustl.edu	37	12	48737166	48737166	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	48737166	48737166	G	A	SNP	ZNF641	ENST00000301042	human	ensembl	74_37	-1	known	nonsense	c.907	p.R303*	0.760	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF641	HGNC	ENSG00000167528				151	0	0	73	11	13.0952
KCNA6	0	genome.wustl.edu	37	12	4919281	4919281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	4919281	4919281	C	T	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	missense	c.74	p.A25V	0.992	prints_K_chnl_volt-dep_Kv1.6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				106	0	0	27	6	18.1818
RHEBL1	0	genome.wustl.edu	37	12	49462855	49462855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	49462855	49462855	G	A	SNP	RHEBL1	ENST00000550797	human	ensembl	74_37	-1	known	missense	c.155	p.A52V	0.999	NULL	NULL	-	no_errors	RHEBL1	HGNC	ENSG00000167550				209	0	0	95	12	11.215
DIP2B	0	genome.wustl.edu	37	12	51116998	51116998	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	51116998	51116998	C	T	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	silent	c.3180	p.I1060	0.910	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084				143	0	0	54	15	21.7391
KRT80	0	genome.wustl.edu	37	12	52565273	52565273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	52565273	52565273	G	A	SNP	KRT80	ENST00000394815	human	ensembl	74_37	-1	known	missense	c.1268	p.S423F	0.995	NULL	pfam_IF,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT80	HGNC	ENSG00000167767				86	0	0	43	5	10.4167
KRT75	0	genome.wustl.edu	37	12	52822136	52822136	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	52822136	52822136	C	G	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1286	p.R429P	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				130	0	0	21	25	54.3478
KRT6A	0	genome.wustl.edu	37	12	52885450	52885450	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	52885450	52885450	T	G	SNP	KRT6A	ENST00000330722	human	ensembl	74_37	-1	known	missense	c.611	p.K204T	0.455	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6A	HGNC	ENSG00000205420				208	0	0	87	9	9.375
KRT71	0	genome.wustl.edu	37	12	52946555	52946555	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	52946555	52946555	G	T	SNP	KRT71	ENST00000267119	human	ensembl	74_37	-1	known	missense	c.307	p.H103N	0.989	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT71	HGNC	ENSG00000139648				159	0	0	86	19	18.0952
KRT73	0	genome.wustl.edu	37	12	53004418	53004418	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	53004418	53004418	G	A	SNP	KRT73	ENST00000305748	human	ensembl	74_37	-1	known	silent	c.1312	p.L438	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049				139	0	0	49	10	16.9492
KRT4	0	genome.wustl.edu	37	12	53202626	53202626	+	Silent	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	53202626	53202626	G	T	SNP	KRT4	ENST00000293774	human	ensembl	74_37	-1	known	silent	c.1065	p.S355	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT4	HGNC	ENSG00000170477				125	0	0	39	6	13.3333
CSAD	0	genome.wustl.edu	37	12	53564261	53564261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	53564261	53564261	G	A	SNP	CSAD	ENST00000267085	human	ensembl	74_37	-1	known	missense	c.674	p.A225V	1.000	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	CSAD	HGNC	ENSG00000139631				121	0	0	35	6	14.6341
HOXC13	0	genome.wustl.edu	37	12	54333266	54333266	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	54333266	54333266	G	A	SNP	HOXC13	ENST00000243056	human	ensembl	74_37	+1	known	silent	c.576	p.S192	1.000	NULL	pfam_Homeobox_dom,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXC13	HGNC	ENSG00000123364				61	0	0	22	9	29.0323
CBX5	0	genome.wustl.edu	37	12	54651347	54651347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	54651347	54651347	C	T	SNP	CBX5	ENST00000209875	human	ensembl	74_37	-1	known	missense	c.88	p.V30M	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX5	HGNC	ENSG00000094916				209	0	0	76	13	14.6067
OR6C6	0	genome.wustl.edu	37	12	55688543	55688543	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	55688543	55688543	C	T	SNP	OR6C6	ENST00000358433	human	ensembl	74_37	-1	known	silent	c.474	p.L158	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C6	HGNC	ENSG00000188324				157	0	0	74	12	13.9535
ERBB3	0	genome.wustl.edu	37	12	56495520	56495520	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	56495520	56495520	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.3710	p.S1237N	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				75	0	0	56	5	8.19672
R3HDM2	0	genome.wustl.edu	37	12	57660560	57660560	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	57660560	57660560	C	T	SNP	R3HDM2	ENST00000347140	human	ensembl	74_37	-1	known	silent	c.2043	p.Q681	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912				48	0	0	26	3	10.3448
INHBC	0	genome.wustl.edu	37	12	57843751	57843751	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	57843751	57843751	C	G	SNP	INHBC	ENST00000309668	human	ensembl	74_37	+1	known	missense	c.1005	p.N335K	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaC	-	no_errors	INHBC	HGNC	ENSG00000175189				152	0	0	48	7	12.7273
CYP27B1	0	genome.wustl.edu	37	12	58158285	58158285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	58158285	58158285	C	T	SNP	CYP27B1	ENST00000228606	human	ensembl	74_37	-1	known	missense	c.1012	p.E338K	0.976	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP27B1	HGNC	ENSG00000111012				264	0	0	100	15	13.0435
CD27	0	genome.wustl.edu	37	12	6559355	6559355	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	6559355	6559355	C	T	SNP	CD27	ENST00000266557	human	ensembl	74_37	+1	known	silent	c.285	p.N95	0.992	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_Fas_rcpt	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_7,prints_Fas_rcpt	-	no_errors	CD27	HGNC	ENSG00000139193				82	0	0	43	7	14
COPS7A	0	genome.wustl.edu	37	12	6840290	6840290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	6840290	6840290	C	T	SNP	COPS7A	ENST00000538410	human	ensembl	74_37	+1	novel	missense	c.761	p.P254L	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS7A	HGNC	ENSG00000111652				36	0	0	14	3	17.6471
LRRIQ1	0	genome.wustl.edu	37	12	85500378	85500378	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	85500378	85500378	A	T	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	missense	c.3362	p.Q1121L	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				112	0	0	76	12	13.6364
C12orf50	0	genome.wustl.edu	37	12	88420304	88420304	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	88420304	88420304	G	A	SNP	C12orf50	ENST00000298699	human	ensembl	74_37	-1	known	missense	c.94	p.P32S	1.000	NULL	NULL	-	no_errors	C12orf50	HGNC	ENSG00000165805				74	0	0	43	5	10.4167
A2M	0	genome.wustl.edu	37	12	9227269	9227269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	9227269	9227269	C	T	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.3643	p.A1215T	0.997	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				54	0	0	20	4	16.6667
MYO16	0	genome.wustl.edu	37	13	109507879	109507879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	109507879	109507879	G	A	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.1271	p.R424H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				40	0	0	33	5	13.1579
SOX1	0	genome.wustl.edu	37	13	112722172	112722172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	112722172	112722172	G	A	SNP	SOX1	ENST00000330949	human	ensembl	74_37	+1	known	missense	c.200	p.R67H	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX1	HGNC	ENSG00000182968				82	0	0	27	5	15.625
TUBA3C	0	genome.wustl.edu	37	13	19748247	19748247	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	19748247	19748247	T	G	SNP	TUBA3C	ENST00000400113	human	ensembl	74_37	-1	known	missense	c.1109	p.K370T	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033				122	0	0	58	20	25.641
GPR12	0	genome.wustl.edu	37	13	27333706	27333706	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	27333706	27333706	C	A	SNP	GPR12	ENST00000381436	human	ensembl	74_37	-1	known	missense	c.259	p.A87S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR_3/6/12_orphan,prints_GPR12,prints_GPCR_Rhodpsn	-	no_errors	GPR12	HGNC	ENSG00000132975				198	0	0	63	14	18.1818
EEF1DP3	0	genome.wustl.edu	37	13	32527308	32527308	+	RNA	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	32527308	32527308	G	T	SNP	EEF1DP3	ENST00000428783	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EEF1DP3	HGNC	ENSG00000229715				36	0	0	25	5	16.6667
SMAD9	0	genome.wustl.edu	37	13	37446842	37446842	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	37446842	37446842	T	C	SNP	SMAD9	ENST00000379826	human	ensembl	74_37	-1	known	missense	c.623	p.H208R	0.994	NULL	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693				77	0	0	48	6	11.1111
FREM2	0	genome.wustl.edu	37	13	39261866	39261866	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	39261866	39261866	T	G	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.385	p.C129G	0.997	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				26	0	0	7	5	41.6667
DGKH	0	genome.wustl.edu	37	13	42793377	42793377	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	42793377	42793377	G	A	SNP	DGKH	ENST00000337343	human	ensembl	74_37	+1	known	silent	c.3225	p.S1075	0.687	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780				336	1	0.296736	152	38	20
AKAP11	0	genome.wustl.edu	37	13	42874175	42874175	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	42874175	42874175	G	A	SNP	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	silent	c.1293	p.P431	0.031	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				296	0	0	127	40	23.9521
CDADC1	0	genome.wustl.edu	37	13	49852489	49852489	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	49852489	49852489	A	C	SNP	CDADC1	ENST00000251108	human	ensembl	74_37	+1	known	missense	c.1054	p.S352R	0.044	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	CDADC1	HGNC	ENSG00000102543				393	0	0	217	48	18.1132
PHF11	0	genome.wustl.edu	37	13	50096243	50096243	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	50096243	50096243	G	T	SNP	PHF11	ENST00000378319	human	ensembl	74_37	+1	known	missense	c.570	p.Q190H	0.027	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF11	HGNC	ENSG00000136147				93	0	0	52	11	17.4603
INTS6	0	genome.wustl.edu	37	13	52004473	52004473	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	52004473	52004473	G	C	SNP	INTS6	ENST00000311234	human	ensembl	74_37	-1	known	missense	c.386	p.T129S	1.000	pfam_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786				266	0	0	170	27	13.7056
LOC101927016	0	genome.wustl.edu	37	13	64320951	64320951	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	64320951	64320951	C	T	SNP	LOC101927016	ENST00000453638	human	ensembl	74_37	+1	known	silent	c.18	p.Y6	0.994	NULL	NULL	-	no_errors	AL445989.1	Clone_based_ensembl_gene	ENSG00000226974				77	0	0	42	9	17.6471
PCDH9	0	genome.wustl.edu	37	13	67800090	67800090	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	67800090	67800090	A	G	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	missense	c.2483	p.V828A	0.938	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				236	0	0	119	27	18.4932
LMO7	0	genome.wustl.edu	37	13	76416988	76416988	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	76416988	76416988	C	A	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	missense	c.4189	p.P1397T	1.000	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153				143	0	0	76	6	7.31707
SCEL	0	genome.wustl.edu	37	13	78133954	78133954	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	78133954	78133954	T	C	SNP	SCEL	ENST00000349847	human	ensembl	74_37	+1	known	silent	c.177	p.G59	0.900	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155				233	0	0	87	18	17.1429
RNF219	0	genome.wustl.edu	37	13	79190731	79190731	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	79190731	79190731	G	T	SNP	RNF219	ENST00000282003	human	ensembl	74_37	-1	known	missense	c.1165	p.P389T	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193				191	0	0	115	15	11.5385
ABCC4	0	genome.wustl.edu	37	13	95839089	95839089	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	95839089	95839089	C	T	SNP	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	missense	c.1411	p.V471M	0.998	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				66	0	0	22	5	18.5185
SNORD114-18	0	genome.wustl.edu	37	14	101442166	101442166	+	RNA	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	101442166	101442166	T	A	SNP	SNORD114-18	ENST00000365272	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD114-18	HGNC	ENSG00000202142				166	0	0	78	11	12.3596
BAG5	0	genome.wustl.edu	37	14	104026975	104026975	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	104026975	104026975	G	C	SNP	BAG5	ENST00000337322	human	ensembl	74_37	-1	known	missense	c.650	p.S217C	0.948	NULL	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG5	HGNC	ENSG00000166170				154	0	0	81	18	18.1818
ZFYVE21	0	genome.wustl.edu	37	14	104194223	104194223	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	104194223	104194223	C	T	SNP	ZFYVE21	ENST00000216602	human	ensembl	74_37	+1	known	silent	c.330	p.Y110	0.998	superfamily_Znf_FYVE_PHD	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE21	HGNC	ENSG00000100711				60	0	0	20	9	31.0345
PPP1R13B	0	genome.wustl.edu	37	14	104205315	104205315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	104205315	104205315	G	A	SNP	PPP1R13B	ENST00000202556	human	ensembl	74_37	-1	known	missense	c.2638	p.H880Y	1.000	superfamily_SH3_domain	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808				246	0	0	110	12	9.83607
RNASE9	0	genome.wustl.edu	37	14	21025068	21025068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	21025068	21025068	G	A	SNP	RNASE9	ENST00000338904	human	ensembl	74_37	-1	known	missense	c.161	p.T54I	0.000	NULL	pfam_RNaseA_domain,superfamily_RNaseA_domain	-	no_errors	RNASE9	HGNC	ENSG00000188655				169	0	0	87	22	20.1835
RNASE12	0	genome.wustl.edu	37	14	21058544	21058544	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	21058544	21058544	G	A	SNP	RNASE12	ENST00000556526	human	ensembl	74_37	-1	known	silent	c.339	p.G113	0.096	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE12	HGNC	ENSG00000258436				146	0	0	81	16	16.4948
LRRC16B	0	genome.wustl.edu	37	14	24528103	24528103	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	24528103	24528103	C	T	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	silent	c.1479	p.F493	0.777	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				99	0	0	29	5	14.7059
LRRC16B	0	genome.wustl.edu	37	14	24530829	24530829	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	24530829	24530829	A	G	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	missense	c.2428	p.I810V	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				113	0	0	38	5	11.6279
ARHGAP5	0	genome.wustl.edu	37	14	32563365	32563365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	32563365	32563365	G	A	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	missense	c.3490	p.A1164T	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				177	0	0	76	15	16.4835
INSM2	0	genome.wustl.edu	37	14	36005050	36005050	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	36005050	36005050	C	T	SNP	INSM2	ENST00000307169	human	ensembl	74_37	+1	known	missense	c.1592	p.P531L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	INSM2	HGNC	ENSG00000168348				90	0	0	47	13	21.6667
SEC23A	0	genome.wustl.edu	37	14	39509940	39509940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	39509940	39509940	C	T	SNP	SEC23A	ENST00000307712	human	ensembl	74_37	-1	known	missense	c.2138	p.S713N	1.000	pfam_Gelsolin_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23A	HGNC	ENSG00000100934				195	0	0	94	19	16.8142
SEC23A	0	genome.wustl.edu	37	14	39517897	39517897	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	39517897	39517897	T	G	SNP	SEC23A	ENST00000307712	human	ensembl	74_37	-1	known	missense	c.1696	p.S566R	1.000	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23A	HGNC	ENSG00000100934				63	0	0	33	6	15.3846
FSCB	0	genome.wustl.edu	37	14	44974445	44974445	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	44974445	44974445	T	G	SNP	FSCB	ENST00000340446	human	ensembl	74_37	-1	known	missense	c.1746	p.E582D	0.000	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139				78	0	0	28	7	20
FAM179B	0	genome.wustl.edu	37	14	45478227	45478227	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	45478227	45478227	A	G	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.3016	p.T1006A	0.230	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				146	0	0	60	17	22.0779
FANCM	0	genome.wustl.edu	37	14	45628389	45628389	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	45628389	45628389	T	G	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.1487	p.L496R	1.000	superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				67	0	0	27	9	25
ENSG00000258882	0	genome.wustl.edu	37	14	62331956	62331956	+	RNA	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	62331956	62331956	G	T	SNP	ENSG00000258882	ENST00000554436	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	CTD-2277K2.1	Clone_based_vega_gene	ENSG00000258882				106	0	0	32	9	21.9512
SPTB	0	genome.wustl.edu	37	14	65261234	65261234	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	65261234	65261234	G	T	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	missense	c.1746	p.D582E	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182				293	0	0	136	26	16.0494
GALNT16	0	genome.wustl.edu	37	14	69791495	69791495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	69791495	69791495	G	A	SNP	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	missense	c.422	p.R141H	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626				68	0	0	36	6	14.2857
GOLGA5	0	genome.wustl.edu	37	14	93264325	93264325	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	93264325	93264325	C	T	SNP	GOLGA5	ENST00000163416	human	ensembl	74_37	+1	known	silent	c.543	p.H181	1.000	NULL	pfam_Golgin_subfamily_A_member_5,superfamily_Prefoldin	-	no_errors	GOLGA5	HGNC	ENSG00000066455				228	0	0	110	16	12.6984
ITPK1	0	genome.wustl.edu	37	14	93483104	93483104	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	93483104	93483104	C	A	SNP	ITPK1	ENST00000267615	human	ensembl	74_37	-1	known	missense	c.163	p.V55F	1.000	pfam_Inositol_tetrakis-P_1-kinase	pfam_Inositol_tetrakis-P_1-kinase	-	no_errors	ITPK1	HGNC	ENSG00000100605				124	0	0	66	10	13.1579
MAGEL2	0	genome.wustl.edu	37	15	23890249	23890249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	23890249	23890249	G	A	SNP	MAGEL2	ENST00000532292	human	ensembl	74_37	-1	known	missense	c.832	p.R278C	0.010	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585				104	0	0	48	14	22.5806
SNHG14	0	genome.wustl.edu	37	15	25330357	25330357	+	RNA	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	25330357	25330357	A	C	SNP	SNHG14	ENST00000383025	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				13	0	0	17	3	15
SNHG14	0	genome.wustl.edu	37	15	25451275	25451275	+	RNA	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	25451275	25451275	C	T	SNP	SNHG14	ENST00000424333	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				65	0	0	71	10	12.3457
SNHG14	0	genome.wustl.edu	37	15	25463828	25463828	+	RNA	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	25463828	25463828	A	G	SNP	SNHG14	ENST00000365067	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.122	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				681	1	0.146628	281	53	15.8683
UBE3A	0	genome.wustl.edu	37	15	25616247	25616247	+	Silent	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	25616247	25616247	T	A	SNP	UBE3A	ENST00000397954	human	ensembl	74_37	-1	known	silent	c.1083	p.L361	0.950	pirsf_Ubiquitin-protein_ligase_E6-AP	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	-	no_errors	UBE3A	HGNC	ENSG00000114062				227	0	0	102	26	20.3125
ATP10A	0	genome.wustl.edu	37	15	25953353	25953353	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	25953353	25953353	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	silent	c.2439	p.I813	0.845	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				167	0	0	47	13	21.6667
MAPKBP1	0	genome.wustl.edu	37	15	42105153	42105153	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	42105153	42105153	C	T	SNP	MAPKBP1	ENST00000456763	human	ensembl	74_37	+1	known	silent	c.673	p.L225	0.999	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802				148	0	0	49	5	9.25926
PLA2G4F	0	genome.wustl.edu	37	15	42434768	42434768	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	42434768	42434768	A	C	SNP	PLA2G4F	ENST00000397272	human	ensembl	74_37	-1	known	missense	c.2293	p.F765V	1.000	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907				114	0	0	45	8	15.0943
DMXL2	0	genome.wustl.edu	37	15	51766637	51766637	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	51766637	51766637	C	A	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.7117	p.A2373S	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				96	0	0	34	22	39.2857
FAM214A	0	genome.wustl.edu	37	15	52970292	52970292	+	RNA	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	52970292	52970292	C	T	SNP	FAM214A	ENST00000562351	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM214A	HGNC	ENSG00000047346				91	0	0	29	13	30.9524
VPS13C	0	genome.wustl.edu	37	15	62214654	62214654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	62214654	62214654	G	A	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.6917	p.S2306L	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				168	0	0	95	14	12.844
HERC1	0	genome.wustl.edu	37	15	64017644	64017644	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	64017644	64017644	C	A	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.3415	p.V1139L	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				232	1	0.429185	73	15	17.0455
CILP	0	genome.wustl.edu	37	15	65495770	65495770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	65495770	65495770	G	A	SNP	CILP	ENST00000261883	human	ensembl	74_37	-1	known	missense	c.958	p.R320W	0.974	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP	HGNC	ENSG00000138615				116	0	0	52	12	18.75
ZWILCH	0	genome.wustl.edu	37	15	66829594	66829594	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	66829594	66829594	T	C	SNP	ZWILCH	ENST00000307897	human	ensembl	74_37	+1	known	missense	c.1567	p.Y523H	1.000	pfam_RZZ-complex_zwilch	pfam_RZZ-complex_zwilch	-	no_errors	ZWILCH	HGNC	ENSG00000174442				83	0	0	49	7	12.5
PARP6	0	genome.wustl.edu	37	15	72552998	72552998	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	72552998	72552998	T	C	SNP	PARP6	ENST00000287196	human	ensembl	74_37	-1	known	missense	c.577	p.M193V	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817				683	1	0.146199	352	61	14.77
SEMA7A	0	genome.wustl.edu	37	15	74703669	74703669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	74703669	74703669	C	T	SNP	SEMA7A	ENST00000261918	human	ensembl	74_37	-1	known	missense	c.1606	p.E536K	0.927	superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA7A	HGNC	ENSG00000138623				50	0	0	28	7	20
SNX33	0	genome.wustl.edu	37	15	75942116	75942116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	75942116	75942116	G	A	SNP	SNX33	ENST00000308527	human	ensembl	74_37	+1	known	missense	c.673	p.A225T	1.000	superfamily_Phox,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX33	HGNC	ENSG00000173548				256	1	0.389105	89	20	18.3486
TBC1D2B	0	genome.wustl.edu	37	15	78290635	78290635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	78290635	78290635	C	T	SNP	TBC1D2B	ENST00000300584	human	ensembl	74_37	-1	known	missense	c.2759	p.R920Q	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2B	HGNC	ENSG00000167202				34	0	0	14	2	12.5
FAH	0	genome.wustl.edu	37	15	80450431	80450431	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	80450431	80450431	C	T	SNP	FAH	ENST00000261755	human	ensembl	74_37	+1	known	silent	c.111	p.G37	0.028	pfam_Fumarylacetoacetase_N,superfamily_Fumarylacetoacetase_N,tigrfam_Fumarylacetoacetase	pfam_Fumarylacetoacetase_C,pfam_Fumarylacetoacetase_N,superfamily_Fumarylacetoacetase_C-rel,superfamily_Fumarylacetoacetase_N,tigrfam_Fumarylacetoacetase	-	no_errors	FAH	HGNC	ENSG00000103876				168	0	0	92	15	14.0187
KIAA1199	0	genome.wustl.edu	37	15	81201537	81201537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	81201537	81201537	G	A	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.1687	p.G563S	0.998	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				96	0	0	41	11	21.1538
TMC3	0	genome.wustl.edu	37	15	81650758	81650758	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	81650758	81650758	G	A	SNP	TMC3	ENST00000359440	human	ensembl	74_37	-1	known	silent	c.585	p.T195	1.000	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869				81	0	0	45	6	11.7647
BNC1	0	genome.wustl.edu	37	15	83932879	83932879	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	83932879	83932879	T	G	SNP	BNC1	ENST00000345382	human	ensembl	74_37	-1	known	missense	c.1124	p.H375P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594				146	0	0	96	18	15.7895
NTRK3	0	genome.wustl.edu	37	15	88679770	88679770	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	88679770	88679770	G	A	SNP	NTRK3	ENST00000360948	human	ensembl	74_37	-1	known	silent	c.693	p.C231	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538				65	0	0	16	7	30.4348
TXNDC11	0	genome.wustl.edu	37	16	11794372	11794372	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	11794372	11794372	G	C	SNP	TXNDC11	ENST00000356957	human	ensembl	74_37	-1	known	missense	c.923	p.A308G	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066				127	0	0	42	18	30
CLCN7	0	genome.wustl.edu	37	16	1498392	1498392	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	1498392	1498392	G	A	SNP	CLCN7	ENST00000382745	human	ensembl	74_37	-1	known	silent	c.1977	p.N659	0.282	pfam_CBS_dom,smart_CBS_dom	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249				76	0	0	25	4	13.7931
ABCC6	0	genome.wustl.edu	37	16	16297439	16297439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	16297439	16297439	C	T	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	missense	c.826	p.G276S	0.013	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				91	0	0	38	12	24
CASKIN1	0	genome.wustl.edu	37	16	2239107	2239107	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	2239107	2239107	G	A	SNP	CASKIN1	ENST00000343516	human	ensembl	74_37	-1	known	missense	c.538	p.R180W	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971				79	0	0	34	9	20.9302
CASKIN1	0	genome.wustl.edu	37	16	2240163	2240163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	2240163	2240163	G	A	SNP	CASKIN1	ENST00000343516	human	ensembl	74_37	-1	known	missense	c.155	p.A52V	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971				70	0	0	16	9	36
NTN3	0	genome.wustl.edu	37	16	2522136	2522136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	2522136	2522136	C	T	SNP	NTN3	ENST00000293973	human	ensembl	74_37	+1	known	missense	c.434	p.A145V	0.915	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN3	HGNC	ENSG00000162068				75	0	0	33	7	17.5
ZNF267	0	genome.wustl.edu	37	16	31925888	31925888	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	31925888	31925888	T	C	SNP	ZNF267	ENST00000300870	human	ensembl	74_37	+1	known	silent	c.318	p.C106	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947				175	0	0	48	9	15.7895
ADCY9	0	genome.wustl.edu	37	16	4057518	4057518	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	4057518	4057518	A	T	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	missense	c.1735	p.S579T	0.991	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				173	0	0	48	18	27.2727
C16orf78	0	genome.wustl.edu	37	16	49433085	49433085	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	49433085	49433085	T	G	SNP	C16orf78	ENST00000299191	human	ensembl	74_37	+1	known	missense	c.694	p.L232V	1.000	NULL	NULL	-	no_errors	C16orf78	HGNC	ENSG00000166152				118	0	0	63	12	16
GPR56	0	genome.wustl.edu	37	16	57685389	57685389	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	57685389	57685389	C	A	SNP	GPR56	ENST00000379696	human	ensembl	74_37	+1	known	missense	c.342	p.D114E	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_orphan_rcpt_GPR56,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR56	HGNC	ENSG00000205336				104	0	0	47	6	11.3208
CDH11	0	genome.wustl.edu	37	16	65005503	65005503	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	65005503	65005503	A	G	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.1621	p.F541L	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				72	0	0	59	6	9.23077
E2F4	0	genome.wustl.edu	37	16	67227352	67227352	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	67227352	67227352	G	T	SNP	E2F4	ENST00000568839	human	ensembl	74_37	+1	known	missense	c.273	p.Q91H	0.054	NULL	pfam_E2F_TDP	-	no_errors	E2F4	HGNC	ENSG00000205250				158	0	0	84	24	22.2222
NUTF2	0	genome.wustl.edu	37	16	67899125	67899125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	67899125	67899125	C	T	SNP	NUTF2	ENST00000219169	human	ensembl	74_37	+1	known	missense	c.92	p.A31V	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NUTF2	HGNC	ENSG00000102898				73	0	0	39	7	15.2174
EDC4	0	genome.wustl.edu	37	16	67917602	67917602	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	67917602	67917602	T	C	SNP	EDC4	ENST00000358933	human	ensembl	74_37	+1	known	silent	c.3981	p.S1327	0.937	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358				422	1	0.236407	123	33	21.1538
HYDIN	0	genome.wustl.edu	37	16	70916576	70916576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	70916576	70916576	G	A	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.10202	p.P3401L	0.997	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				77	0	0	37	7	15.9091
DHX38	0	genome.wustl.edu	37	16	72131582	72131582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	72131582	72131582	G	A	SNP	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	missense	c.518	p.R173Q	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				36	0	0	16	3	15.7895
ZFHX3	0	genome.wustl.edu	37	16	72829238	72829238	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	72829238	72829238	C	G	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.7343	p.G2448A	0.967	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				129	0	0	47	10	17.5439
FBXL16	0	genome.wustl.edu	37	16	744686	744686	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	744686	744686	G	C	SNP	FBXL16	ENST00000324361	human	ensembl	74_37	-1	known	missense	c.1239	p.F413L	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL16	HGNC	ENSG00000127585				25	0	0	6	3	33.3333
ADAMTS18	0	genome.wustl.edu	37	16	77398116	77398116	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	77398116	77398116	A	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.941	p.V314D	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				187	0	0	66	25	27.4725
NARFL	0	genome.wustl.edu	37	16	789666	789666	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	789666	789666	C	T	SNP	NARFL	ENST00000251588	human	ensembl	74_37	-1	known	missense	c.139	p.G47R	1.000	NULL	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARFL	HGNC	ENSG00000103245				190	0	0	75	14	15.7303
CDH13	0	genome.wustl.edu	37	16	83159001	83159001	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	83159001	83159001	A	T	SNP	CDH13	ENST00000566620	human	ensembl	74_37	+1	known	missense	c.378	p.K126N	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945				50	0	0	16	4	20
NECAB2	0	genome.wustl.edu	37	16	84030847	84030847	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	84030847	84030847	C	T	SNP	NECAB2	ENST00000305202	human	ensembl	74_37	+1	known	silent	c.822	p.R274	0.986	NULL	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NECAB2	HGNC	ENSG00000103154				100	0	0	28	8	22.2222
FOXL1	0	genome.wustl.edu	37	16	86612679	86612679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	86612679	86612679	C	T	SNP	FOXL1	ENST00000320241	human	ensembl	74_37	+1	known	missense	c.350	p.P117L	0.998	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXL1	HGNC	ENSG00000176678				233	0	0	80	22	21.5686
ANKRD11	0	genome.wustl.edu	37	16	89351098	89351098	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	89351098	89351098	C	T	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	missense	c.1852	p.A618T	0.998	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				109	0	0	66	4	5.71429
MYH1	0	genome.wustl.edu	37	17	10402102	10402102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	10402102	10402102	C	T	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.4022	p.R1341H	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				167	0	0	75	15	16.6667
SREBF1	0	genome.wustl.edu	37	17	17723594	17723594	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	17723594	17723594	C	T	SNP	SREBF1	ENST00000355815	human	ensembl	74_37	-1	known	silent	c.423	p.P141	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF1	HGNC	ENSG00000072310				150	0	0	51	7	12.069
SMCR8	0	genome.wustl.edu	37	17	18220056	18220056	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	18220056	18220056	A	C	SNP	SMCR8	ENST00000406438	human	ensembl	74_37	+1	known	missense	c.953	p.K318T	1.000	NULL	pfam_Folliculin	-	no_errors	SMCR8	HGNC	ENSG00000176994				103	0	0	57	11	16.1765
USP22	0	genome.wustl.edu	37	17	20921343	20921343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	20921343	20921343	C	T	SNP	USP22	ENST00000261497	human	ensembl	74_37	-1	known	missense	c.602	p.R201Q	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP22	HGNC	ENSG00000124422				171	0	0	66	13	16.4557
UBBP4	0	genome.wustl.edu	37	17	21731451	21731451	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	21731451	21731451	G	A	SNP	UBBP4	ENST00000578713	human	ensembl	74_37	+1	putative	missense	c.526	p.E176K	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				93	0	0	45	10	18.1818
POLDIP2	0	genome.wustl.edu	37	17	26675234	26675234	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	26675234	26675234	G	C	SNP	POLDIP2	ENST00000540200	human	ensembl	74_37	-1	known	missense	c.1013	p.P338R	1.000	superfamily_ApaG_domain,pfscan_ApaG_domain	pfam_ApaG_domain,pfam_Hemimethylated_DNA-bd_dom,superfamily_ApaG_domain,superfamily_Hemimethylated_DNA-bd_dom,pfscan_ApaG_domain	-	no_errors	POLDIP2	HGNC	ENSG00000004142				92	0	0	29	5	14.7059
MYO18A	0	genome.wustl.edu	37	17	27413999	27413999	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	27413999	27413999	C	G	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	missense	c.5667	p.E1889D	1.000	superfamily_Regulat_G_prot_signal_superfam	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				49	0	0	26	7	21.2121
MYO18A	0	genome.wustl.edu	37	17	27442109	27442109	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	27442109	27442109	T	A	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	missense	c.2327	p.K776M	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				50	0	0	8	6	42.8571
ANKRD13B	0	genome.wustl.edu	37	17	27934839	27934839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	27934839	27934839	G	A	SNP	ANKRD13B	ENST00000394859	human	ensembl	74_37	+1	known	missense	c.194	p.R65H	0.988	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13B	HGNC	ENSG00000198720				69	0	0	43	4	8.51064
SSH2	0	genome.wustl.edu	37	17	27958633	27958633	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	27958633	27958633	G	A	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	silent	c.3498	p.S1166	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				116	0	0	55	10	15.3846
ZNF207	0	genome.wustl.edu	37	17	30685633	30685633	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	30685633	30685633	C	G	SNP	ZNF207	ENST00000394670	human	ensembl	74_37	+1	known	missense	c.280	p.R94G	0.984	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF207	HGNC	ENSG00000010244				152	0	0	75	18	19.3548
LIG3	0	genome.wustl.edu	37	17	33323671	33323671	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	33323671	33323671	A	T	SNP	LIG3	ENST00000378526	human	ensembl	74_37	+1	known	nonsense	c.1822	p.R608*	1.000	pfam_DNA_ligase_ATP-dep_cent,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156				168	0	0	122	19	13.4752
RFFL	0	genome.wustl.edu	37	17	33338995	33338995	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	33338995	33338995	G	A	SNP	RFFL	ENST00000315249	human	ensembl	74_37	-1	known	missense	c.1084	p.R362W	1.000	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RFFL	HGNC	ENSG00000092871				138	0	0	56	7	11.1111
TRPV3	0	genome.wustl.edu	37	17	3458106	3458106	+	Silent	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	3458106	3458106	G	C	SNP	TRPV3	ENST00000301365	human	ensembl	74_37	-1	known	silent	c.39	p.G13	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	-	no_errors	TRPV3	HGNC	ENSG00000167723				84	0	0	21	8	27.5862
THRA	0	genome.wustl.edu	37	17	38249587	38249587	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	38249587	38249587	G	T	SNP	THRA	ENST00000264637	human	ensembl	74_37	+1	known	missense	c.1425	p.E475D	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351				55	0	0	25	3	10.7143
KRT222	0	genome.wustl.edu	37	17	38821186	38821186	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	38821186	38821186	G	C	SNP	KRT222	ENST00000394049	human	ensembl	74_37	-1	known	missense	c.166	p.R56G	1.000	NULL	NULL	-	no_errors	KRT222	HGNC	ENSG00000213424				74	0	0	56	26	31.7073
KRTAP9-4	0	genome.wustl.edu	37	17	39406320	39406320	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	39406320	39406320	C	A	SNP	KRTAP9-4	ENST00000334109	human	ensembl	74_37	+1	known	nonsense	c.348	p.C116*	0.018	NULL	NULL	-	no_errors	KRTAP9-4	HGNC	ENSG00000241595				382	0	0	186	63	25.3012
KRT31	0	genome.wustl.edu	37	17	39551161	39551161	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	39551161	39551161	G	A	SNP	KRT31	ENST00000251645	human	ensembl	74_37	-1	known	missense	c.1036	p.R346C	0.994	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT31	HGNC	ENSG00000094796				264	0	0	131	24	15.4839
LOC100505782	0	genome.wustl.edu	37	17	39564977	39564977	+	RNA	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	39564977	39564977	G	C	SNP	LOC100505782	ENST00000430006	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.677	-	-	-	no_errors	AC003958.2	Clone_based_vega_gene	ENSG00000234859				38	0	0	23	6	20.6897
GPATCH8	0	genome.wustl.edu	37	17	42541896	42541896	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	42541896	42541896	C	T	SNP	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	missense	c.137	p.R46H	1.000	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				308	0	0	122	60	32.967
KANSL1	0	genome.wustl.edu	37	17	44248449	44248449	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	44248449	44248449	A	T	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	nonsense	c.1061	p.L354*	1.000	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				203	0	0	147	12	7.54717
KANSL1	0	genome.wustl.edu	37	17	44248642	44248642	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	44248642	44248642	G	A	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	nonsense	c.868	p.R290*	1.000	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				148	0	0	111	7	5.9322
WNT3	0	genome.wustl.edu	37	17	44846085	44846085	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	44846085	44846085	C	T	SNP	WNT3	ENST00000225512	human	ensembl	74_37	-1	known	silent	c.669	p.A223	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3	HGNC	ENSG00000108379				118	0	0	48	21	30.4348
PHB	0	genome.wustl.edu	37	17	47482484	47482484	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	47482484	47482484	G	C	SNP	PHB	ENST00000300408	human	ensembl	74_37	-1	known	missense	c.689	p.T230S	0.943	NULL	pfam_Band_7,smart_Band_7,prints_Prohibitin	-	no_errors	PHB	HGNC	ENSG00000167085				40	0	0	21	3	12.5
SPATA20	0	genome.wustl.edu	37	17	48628510	48628510	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	48628510	48628510	C	A	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	missense	c.1535	p.P512H	1.000	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				62	0	0	18	8	30.7692
VPS53	0	genome.wustl.edu	37	17	534812	534812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	534812	534812	G	A	SNP	VPS53	ENST00000437048	human	ensembl	74_37	-1	known	missense	c.665	p.A222V	1.000	pfam_Vps53_N	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252				130	0	0	41	5	10.8696
SMG8	0	genome.wustl.edu	37	17	57288479	57288479	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	57288479	57288479	G	T	SNP	SMG8	ENST00000300917	human	ensembl	74_37	+1	known	missense	c.1067	p.R356M	1.000	pfam_Smg8/Smg9	pfam_Smg8/Smg9	-	no_errors	SMG8	HGNC	ENSG00000167447				114	0	0	71	10	12.3457
BCAS3	0	genome.wustl.edu	37	17	59469373	59469373	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	59469373	59469373	A	G	SNP	BCAS3	ENST00000390652	human	ensembl	74_37	+1	known	missense	c.2674	p.N892D	1.000	NULL	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376				209	0	0	95	5	5
DCAF7	0	genome.wustl.edu	37	17	61660984	61660984	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	61660984	61660984	G	A	SNP	DCAF7	ENST00000310827	human	ensembl	74_37	+1	known	missense	c.649	p.E217K	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF7	HGNC	ENSG00000136485				109	0	0	48	5	9.43396
MAP3K3	0	genome.wustl.edu	37	17	61770978	61770978	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	61770978	61770978	C	T	SNP	MAP3K3	ENST00000361357	human	ensembl	74_37	+1	known	silent	c.1815	p.A605	0.013	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K3	HGNC	ENSG00000198909				157	0	0	73	18	19.7802
FTSJ3	0	genome.wustl.edu	37	17	61899483	61899483	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	61899483	61899483	A	G	SNP	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	missense	c.1336	p.F446L	0.631	NULL	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592				123	0	0	88	15	14.5631
PLEKHM1P	0	genome.wustl.edu	37	17	62810981	62810981	+	RNA	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	62810981	62810981	C	T	SNP	PLEKHM1P	ENST00000580919	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	PLEKHM1P	HGNC	ENSG00000214176				30	0	0	14	7	33.3333
FAM64A	0	genome.wustl.edu	37	17	6350927	6350927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	6350927	6350927	G	A	SNP	FAM64A	ENST00000250056	human	ensembl	74_37	+1	known	missense	c.439	p.A147T	0.056	pfam_DUF1466	pfam_DUF1466	-	no_errors	FAM64A	HGNC	ENSG00000129195				51	0	0	24	4	14.2857
BPTF	0	genome.wustl.edu	37	17	65924597	65924597	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	65924597	65924597	A	T	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.6256	p.T2086S	0.032	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				99	0	0	53	7	11.6667
WIPI1	0	genome.wustl.edu	37	17	66446986	66446986	+	Silent	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	66446986	66446986	C	G	SNP	WIPI1	ENST00000262139	human	ensembl	74_37	-1	known	silent	c.216	p.V72	0.999	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI1	HGNC	ENSG00000070540				172	0	0	105	15	12.5
TEKT1	0	genome.wustl.edu	37	17	6716254	6716254	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	6716254	6716254	C	T	SNP	TEKT1	ENST00000338694	human	ensembl	74_37	-1	known	missense	c.748	p.A250T	0.727	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT1	HGNC	ENSG00000167858				209	0	0	90	24	21.0526
CD300LB	0	genome.wustl.edu	37	17	72518885	72518885	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	72518885	72518885	C	A	SNP	CD300LB	ENST00000392621	human	ensembl	74_37	-1	known	missense	c.709	p.A237S	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300LB	HGNC	ENSG00000178789				124	0	0	54	25	31.6456
CD300LF	0	genome.wustl.edu	37	17	72700807	72700807	+	Silent	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	72700807	72700807	G	T	SNP	CD300LF	ENST00000326165	human	ensembl	74_37	-1	known	silent	c.192	p.I64	0.002	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300LF	HGNC	ENSG00000186074				308	0	0	167	56	25.1121
CASKIN2	0	genome.wustl.edu	37	17	73498180	73498180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	73498180	73498180	C	T	SNP	CASKIN2	ENST00000321617	human	ensembl	74_37	-1	known	missense	c.2975	p.R992Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN2	HGNC	ENSG00000177303				109	0	0	41	4	8.88889
FBF1	0	genome.wustl.edu	37	17	73924169	73924169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	73924169	73924169	G	A	SNP	FBF1	ENST00000389570	human	ensembl	74_37	-1	known	missense	c.343	p.P115S	0.001	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878				75	0	0	30	14	31.8182
KDM6B	0	genome.wustl.edu	37	17	7754383	7754383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	7754383	7754383	G	A	SNP	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	missense	c.3718	p.E1240K	0.998	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				49	0	0	18	4	18.1818
CCDC40	0	genome.wustl.edu	37	17	78069165	78069165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	78069165	78069165	G	A	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.2936	p.R979H	0.871	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				132	0	0	56	18	24.3243
RNF213	0	genome.wustl.edu	37	17	78358856	78358856	+	Silent	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	78358856	78358856	G	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	silent	c.14340	p.L4780	1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				128	0	0	67	29	30.2083
ENDOV	0	genome.wustl.edu	37	17	78395734	78395734	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	78395734	78395734	G	A	SNP	ENDOV	ENST00000518137	human	ensembl	74_37	+1	known	missense	c.335	p.R112Q	0.871	pfam_Endonuclease-V	pfam_Endonuclease-V	-	no_errors	ENDOV	HGNC	ENSG00000173818				47	0	0	16	3	15.7895
GUCY2D	0	genome.wustl.edu	37	17	7917215	7917215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	7917215	7917215	C	T	SNP	GUCY2D	ENST00000254854	human	ensembl	74_37	+1	known	missense	c.2281	p.R761W	0.022	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518				139	0	0	53	14	20.8955
AZI1	0	genome.wustl.edu	37	17	79173612	79173612	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	79173612	79173612	C	A	SNP	AZI1	ENST00000269392	human	ensembl	74_37	-1	known	missense	c.930	p.E310D	0.489	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577				229	0	0	91	12	11.6505
ENSG00000260005	0	genome.wustl.edu	37	17	79204320	79204320	+	RNA	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	79204320	79204320	C	T	SNP	ENSG00000260005	ENST00000575922	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC027601.1	Clone_based_vega_gene	ENSG00000260005				64	0	0	38	15	28.3019
SLC38A10	0	genome.wustl.edu	37	17	79220832	79220832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	79220832	79220832	C	T	SNP	SLC38A10	ENST00000374759	human	ensembl	74_37	-1	known	missense	c.2095	p.A699T	0.773	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637				60	0	0	18	8	30.7692
SECTM1	0	genome.wustl.edu	37	17	80285049	80285049	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	80285049	80285049	G	T	SNP	SECTM1	ENST00000269389	human	ensembl	74_37	-1	known	missense	c.68	p.A23D	0.002	NULL	NULL	-	no_errors	SECTM1	HGNC	ENSG00000141574				29	0	0	15	4	21.0526
RCVRN	0	genome.wustl.edu	37	17	9801322	9801322	+	RNA	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	9801322	9801322	C	T	SNP	RCVRN	ENST00000570909	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RCVRN	HGNC	ENSG00000109047				49	0	0	36	6	14.2857
APCDD1	0	genome.wustl.edu	37	18	10487638	10487638	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	10487638	10487638	A	G	SNP	APCDD1	ENST00000355285	human	ensembl	74_37	+1	known	missense	c.1148	p.N383S	1.000	NULL	NULL	-	no_errors	APCDD1	HGNC	ENSG00000154856				133	0	0	59	5	7.8125
RBBP8	0	genome.wustl.edu	37	18	20586340	20586340	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	20586340	20586340	C	G	SNP	RBBP8	ENST00000327155	human	ensembl	74_37	+1	known	missense	c.2302	p.Q768E	1.000	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773				76	0	0	43	16	27.1186
NDC80	0	genome.wustl.edu	37	18	2595494	2595494	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	2595494	2595494	C	T	SNP	NDC80	ENST00000261597	human	ensembl	74_37	+1	known	silent	c.1095	p.D365	1.000	NULL	pfam_Kinetochore_Ndc80,superfamily_t-SNARE	-	no_errors	NDC80	HGNC	ENSG00000080986				134	0	0	58	7	10.7692
DSG4	0	genome.wustl.edu	37	18	28979459	28979459	+	Silent	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	28979459	28979459	A	T	SNP	DSG4	ENST00000359747	human	ensembl	74_37	+1	known	silent	c.1230	p.T410	0.998	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065				154	0	0	70	19	21.3483
DSG3	0	genome.wustl.edu	37	18	29038540	29038540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	29038540	29038540	C	T	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	missense	c.349	p.R117W	0.981	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				78	0	0	36	11	23.4043
TTR	0	genome.wustl.edu	37	18	29178579	29178579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	29178579	29178579	G	A	SNP	TTR	ENST00000237014	human	ensembl	74_37	+1	known	missense	c.385	p.A129T	0.486	pfam_Transthyretin/HIU_hydrolase_SF,superfamily_Transthyretin/HIU_hydrolase_SF,smart_Transthyretin/HIU_hydrolase_SF	pfam_Transthyretin/HIU_hydrolase_SF,superfamily_Transthyretin/HIU_hydrolase_SF,smart_Transthyretin/HIU_hydrolase_SF,prints_Transthyretin/HIU_hydrolase	-	no_errors	TTR	HGNC	ENSG00000118271				128	0	0	44	5	10.2041
RNF125	0	genome.wustl.edu	37	18	29617149	29617149	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	29617149	29617149	C	G	SNP	RNF125	ENST00000217740	human	ensembl	74_37	+1	known	missense	c.235	p.L79V	0.997	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF125	HGNC	ENSG00000101695				377	0	0	223	42	15.8491
TCEB3C	0	genome.wustl.edu	37	18	44555312	44555312	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	44555312	44555312	G	C	SNP	TCEB3C	ENST00000330682	human	ensembl	74_37	-1	known	missense	c.902	p.S301C	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3C	HGNC	ENSG00000183791				9	0	0	39	30	43.4783
TMEM200C	0	genome.wustl.edu	37	18	5892008	5892008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	5892008	5892008	G	A	SNP	TMEM200C	ENST00000383490	human	ensembl	74_37	-1	known	missense	c.55	p.R19C	0.987	pfam_DUF2371_TMEM200	pfam_DUF2371_TMEM200	-	no_errors	TMEM200C	HGNC	ENSG00000206432				52	0	0	20	5	20
DSEL	0	genome.wustl.edu	37	18	65180002	65180002	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	65180002	65180002	T	C	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	missense	c.1874	p.K625R	0.902	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				93	0	0	55	11	16.6667
LAMA1	0	genome.wustl.edu	37	18	6955431	6955431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	6955431	6955431	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.8128	p.V2710I	0.007	NULL	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				70	0	0	23	7	23.3333
LAMA1	0	genome.wustl.edu	37	18	7024437	7024437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	7024437	7024437	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.2431	p.G811R	0.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				47	0	0	19	3	13.6364
LAMA1	0	genome.wustl.edu	37	18	7049125	7049125	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	7049125	7049125	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.720	p.T240	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				166	1	0.598802	64	8	11.1111
ATP9B	0	genome.wustl.edu	37	18	77096644	77096644	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	77096644	77096644	G	C	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	missense	c.2045	p.R682P	0.832	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				45	0	0	12	16	57.1429
VAPA	0	genome.wustl.edu	37	18	9931887	9931887	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	9931887	9931887	A	G	SNP	VAPA	ENST00000340541	human	ensembl	74_37	+1	known	missense	c.160	p.T54A	1.000	pfam_MSP_dom,superfamily_PapD-like,pirsf_Vesicle-associated_membrane,pfscan_MSP_dom	pfam_MSP_dom,superfamily_PapD-like,pirsf_Vesicle-associated_membrane,pfscan_MSP_dom	-	no_errors	VAPA	HGNC	ENSG00000101558				136	0	0	61	9	12.8571
DNMT1	0	genome.wustl.edu	37	19	10250779	10250779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	10250779	10250779	C	T	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	missense	c.3749	p.R1250H	1.000	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816				127	0	0	40	6	13.0435
PDE4A	0	genome.wustl.edu	37	19	10556998	10556998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	10556998	10556998	G	A	SNP	PDE4A	ENST00000352831	human	ensembl	74_37	+1	known	missense	c.425	p.R142H	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4A	HGNC	ENSG00000065989				52	0	0	15	2	11.7647
YIPF2	0	genome.wustl.edu	37	19	11034007	11034007	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	11034007	11034007	G	A	SNP	YIPF2	ENST00000253031	human	ensembl	74_37	-1	known	missense	c.911	p.A304V	0.000	NULL	pfam_Yip1	-	no_errors	YIPF2	HGNC	ENSG00000130733				204	0	0	73	11	13.0952
DOCK6	0	genome.wustl.edu	37	19	11363483	11363483	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	11363483	11363483	G	A	SNP	DOCK6	ENST00000294618	human	ensembl	74_37	-1	known	missense	c.284	p.T95M	0.983	pfam_DOCK_C/D_N	pfam_DOCK_C,pfam_DOCK_C/D_N	-	no_errors	DOCK6	HGNC	ENSG00000130158				65	0	0	20	7	25.9259
ECSIT	0	genome.wustl.edu	37	19	11624073	11624073	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	11624073	11624073	G	A	SNP	ECSIT	ENST00000270517	human	ensembl	74_37	-1	known	missense	c.536	p.T179M	0.998	pfam_ECSIT	pfam_ECSIT	-	no_errors	ECSIT	HGNC	ENSG00000130159				67	0	0	40	12	23.0769
ZNF333	0	genome.wustl.edu	37	19	14829686	14829686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	14829686	14829686	G	A	SNP	ZNF333	ENST00000292530	human	ensembl	74_37	+1	known	missense	c.1547	p.R516Q	0.045	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961				135	0	0	66	5	7.04225
EMR2	0	genome.wustl.edu	37	19	14877174	14877174	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	14877174	14877174	G	A	SNP	EMR2	ENST00000315576	human	ensembl	74_37	-1	known	silent	c.507	p.S169	0.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR2	HGNC	ENSG00000127507				157	0	0	63	17	21.25
SYDE1	0	genome.wustl.edu	37	19	15224418	15224418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	15224418	15224418	C	T	SNP	SYDE1	ENST00000342784	human	ensembl	74_37	+1	known	missense	c.1852	p.P618S	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137				385	0	0	108	17	13.6
NOTCH3	0	genome.wustl.edu	37	19	15290911	15290911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	15290911	15290911	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	missense	c.3299	p.R1100H	0.906	pirsf_Notch,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				91	0	0	61	9	12.8571
TCF3	0	genome.wustl.edu	37	19	1615428	1615428	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	1615428	1615428	G	A	SNP	TCF3	ENST00000262965	human	ensembl	74_37	-1	known	silent	c.1678	p.L560	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF3	HGNC	ENSG00000071564				219	0	0	106	13	10.9244
MAST3	0	genome.wustl.edu	37	19	18252811	18252811	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	18252811	18252811	G	A	SNP	MAST3	ENST00000262811	human	ensembl	74_37	+1	known	silent	c.2238	p.L746	0.971	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST3	HGNC	ENSG00000099308				21	0	0	15	9	37.5
KLHL26	0	genome.wustl.edu	37	19	18779602	18779602	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	18779602	18779602	G	A	SNP	KLHL26	ENST00000300976	human	ensembl	74_37	+1	known	silent	c.1395	p.S465	0.266	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487				60	0	0	29	3	9.375
TSSK6	0	genome.wustl.edu	37	19	19626213	19626213	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	19626213	19626213	G	A	SNP	TSSK6	ENST00000360913	human	ensembl	74_37	-1	known	silent	c.24	p.S8	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TSSK6	HGNC	ENSG00000178093				159	0	0	47	5	9.61538
ATP13A1	0	genome.wustl.edu	37	19	19767528	19767528	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	19767528	19767528	G	A	SNP	ATP13A1	ENST00000357324	human	ensembl	74_37	-1	known	nonsense	c.1024	p.R342*	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A1	HGNC	ENSG00000105726				56	0	0	15	3	16.6667
JSRP1	0	genome.wustl.edu	37	19	2252963	2252963	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	2252963	2252963	G	T	SNP	JSRP1	ENST00000300961	human	ensembl	74_37	-1	known	missense	c.476	p.P159H	0.418	NULL	NULL	-	no_errors	JSRP1	HGNC	ENSG00000167476				40	0	0	9	3	25
ZNF57	0	genome.wustl.edu	37	19	2917677	2917677	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	2917677	2917677	G	A	SNP	ZNF57	ENST00000306908	human	ensembl	74_37	+1	known	missense	c.1058	p.G353D	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF57	HGNC	ENSG00000171970				98	0	0	56	12	17.6471
CEP89	0	genome.wustl.edu	37	19	33424379	33424379	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	33424379	33424379	A	G	SNP	CEP89	ENST00000305768	human	ensembl	74_37	-1	known	silent	c.864	p.A288	0.002	NULL	NULL	-	no_errors	CEP89	HGNC	ENSG00000121289				228	0	0	131	11	7.74648
RHPN2	0	genome.wustl.edu	37	19	33512524	33512524	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	33512524	33512524	G	C	SNP	RHPN2	ENST00000254260	human	ensembl	74_37	-1	known	missense	c.343	p.L115V	0.999	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941				112	0	0	54	7	11.4754
ZNF30	0	genome.wustl.edu	37	19	35422801	35422801	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	35422801	35422801	G	T	SNP	ZNF30	ENST00000303586	human	ensembl	74_37	+1	known	missense	c.64	p.A22S	0.988	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF30	HGNC	ENSG00000168661				54	0	0	28	6	17.6471
LGI4	0	genome.wustl.edu	37	19	35617783	35617783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	35617783	35617783	C	T	SNP	LGI4	ENST00000310123	human	ensembl	74_37	-1	known	missense	c.767	p.R256H	0.997	NULL	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI4	HGNC	ENSG00000153902				49	0	0	22	4	15.3846
FFAR2	0	genome.wustl.edu	37	19	35941244	35941244	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	35941244	35941244	C	G	SNP	FFAR2	ENST00000246549	human	ensembl	74_37	+1	known	missense	c.628	p.P210A	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_GPR40-rel_orph	-	no_errors	FFAR2	HGNC	ENSG00000126262				226	0	0	115	18	13.5338
ZBTB32	0	genome.wustl.edu	37	19	36206271	36206271	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	36206271	36206271	C	A	SNP	ZBTB32	ENST00000262630	human	ensembl	74_37	+1	known	nonsense	c.743	p.S248*	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB32	HGNC	ENSG00000011590				174	0	0	93	9	8.82353
U2AF1L4	0	genome.wustl.edu	37	19	36234944	36234944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	36234944	36234944	G	A	SNP	U2AF1L4	ENST00000412391	human	ensembl	74_37	-1	known	missense	c.451	p.R151W	1.000	pfam_Znf_CCCH,smart_Znf_CCCH,prints_U2_small	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,prints_U2_small,pfscan_RRM_dom	-	no_errors	U2AF1L4	HGNC	ENSG00000161265				135	0	0	62	13	17.3333
ARHGAP33	0	genome.wustl.edu	37	19	36271949	36271949	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	36271949	36271949	G	T	SNP	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	missense	c.957	p.E319D	0.999	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777				85	0	0	47	4	7.84314
PRODH2	0	genome.wustl.edu	37	19	36304127	36304127	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	36304127	36304127	A	G	SNP	PRODH2	ENST00000301175	human	ensembl	74_37	-1	known	silent	c.57	p.I19	0.010	NULL	pfam_Proline_DH	-	no_errors	PRODH2	HGNC	ENSG00000250799				44	0	0	26	7	21.2121
NPHS1	0	genome.wustl.edu	37	19	36332672	36332672	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	36332672	36332672	A	G	SNP	NPHS1	ENST00000378910	human	ensembl	74_37	-1	known	silent	c.2760	p.C920	0.999	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NPHS1	HGNC	ENSG00000161270				76	0	0	32	10	23.8095
NFKBID	0	genome.wustl.edu	37	19	36388655	36388655	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	36388655	36388655	G	A	SNP	NFKBID	ENST00000352614	human	ensembl	74_37	-1	known	silent	c.360	p.S120	0.178	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NFKBID	HGNC	ENSG00000167604				57	0	0	33	7	17.5
ZNF790	0	genome.wustl.edu	37	19	37310520	37310520	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	37310520	37310520	A	G	SNP	ZNF790	ENST00000356725	human	ensembl	74_37	-1	known	silent	c.726	p.T242	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863				91	0	0	66	14	17.5
ZFP30	0	genome.wustl.edu	37	19	38134164	38134164	+	Splice_Site	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	38134164	38134164	A	G	SNP	ZFP30	ENST00000351218	human	ensembl	74_37	-1	known	splice_site	c.235+2	e3+2	0.999	-	-	-	no_errors	ZFP30	HGNC	ENSG00000120784				402	0	0	156	20	11.3636
ZNF781	0	genome.wustl.edu	37	19	38160451	38160451	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	38160451	38160451	A	C	SNP	ZNF781	ENST00000358582	human	ensembl	74_37	-1	known	missense	c.599	p.L200R	0.100	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF781	HGNC	ENSG00000196381				118	0	0	67	21	23.8636
ZNF573	0	genome.wustl.edu	37	19	38283441	38283441	+	RNA	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	38283441	38283441	C	A	SNP	ZNF573	ENST00000480587	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF573	HGNC	ENSG00000189144				348	0	0	169	22	11.5183
CATSPERG	0	genome.wustl.edu	37	19	38861356	38861356	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	38861356	38861356	G	A	SNP	CATSPERG	ENST00000409235	human	ensembl	74_37	+1	known	missense	c.3404	p.G1135D	0.000	NULL	NULL	-	no_errors	CATSPERG	HGNC	ENSG00000099338				160	0	0	90	16	15.0943
FAM98C	0	genome.wustl.edu	37	19	38895639	38895639	+	Silent	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	38895639	38895639	A	C	SNP	FAM98C	ENST00000252530	human	ensembl	74_37	+1	known	silent	c.441	p.V147	0.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244				318	0	0	105	44	29.5302
SARS2	0	genome.wustl.edu	37	19	39412279	39412279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	39412279	39412279	C	T	SNP	SARS2	ENST00000221431	human	ensembl	74_37	-1	known	missense	c.422	p.R141H	0.000	pirsf_Ser-tRNA-ligase_type_1,superfamily_tRNA-bd_arm,tigrfam_Ser-tRNA-ligase_type_1	pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS2	HGNC	ENSG00000104835				63	0	0	29	6	17.1429
LTBP4	0	genome.wustl.edu	37	19	41114169	41114169	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	41114169	41114169	C	G	SNP	LTBP4	ENST00000308370	human	ensembl	74_37	+1	known	nonsense	c.1401	p.Y467*	1.000	superfamily_TB_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006				64	0	0	14	5	26.3158
EXOSC5	0	genome.wustl.edu	37	19	41892595	41892595	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	41892595	41892595	C	T	SNP	EXOSC5	ENST00000221233	human	ensembl	74_37	-1	known	silent	c.651	p.S217	0.001	superfamily_ExoRNase_PH_dom2	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC5	HGNC	ENSG00000077348				19	0	0	3	5	62.5
ATP1A3	0	genome.wustl.edu	37	19	42486220	42486220	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	42486220	42486220	C	A	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	missense	c.1032	p.K344N	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				247	0	0	83	14	14.433
CIC	0	genome.wustl.edu	37	19	42795827	42795827	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	42795827	42795827	G	C	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.2816	p.G939A	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				193	1	0.515464	78	22	22
PSG8	0	genome.wustl.edu	37	19	43258708	43258708	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	43258708	43258708	T	C	SNP	PSG8	ENST00000306511	human	ensembl	74_37	-1	known	silent	c.1020	p.S340	0.001	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG8	HGNC	ENSG00000124467				238	0	0	115	33	22.2973
CHAF1A	0	genome.wustl.edu	37	19	4409294	4409294	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	4409294	4409294	C	T	SNP	CHAF1A	ENST00000301280	human	ensembl	74_37	+1	known	silent	c.498	p.N166	0.000	NULL	pfam_CAF1A	-	no_errors	CHAF1A	HGNC	ENSG00000167670				202	0	0	70	13	15.6627
PLAUR	0	genome.wustl.edu	37	19	44174241	44174241	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	44174241	44174241	A	G	SNP	PLAUR	ENST00000340093	human	ensembl	74_37	-1	known	missense	c.32	p.L11P	0.130	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	PLAUR	HGNC	ENSG00000011422				162	0	0	65	26	28.5714
LRG1	0	genome.wustl.edu	37	19	4538912	4538912	+	Silent	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	4538912	4538912	C	A	SNP	LRG1	ENST00000306390	human	ensembl	74_37	-1	known	silent	c.84	p.L28	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRG1	HGNC	ENSG00000171236				135	0	0	68	7	9.33333
CLPTM1	0	genome.wustl.edu	37	19	45476381	45476381	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	45476381	45476381	C	T	SNP	CLPTM1	ENST00000337392	human	ensembl	74_37	+1	known	nonsense	c.223	p.R75*	1.000	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1	HGNC	ENSG00000104853				177	0	0	51	10	16.3934
PPP1R13L	0	genome.wustl.edu	37	19	45885799	45885799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	45885799	45885799	G	A	SNP	PPP1R13L	ENST00000360957	human	ensembl	74_37	-1	known	missense	c.2434	p.R812W	0.757	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881				152	0	0	59	10	14.4928
SIX5	0	genome.wustl.edu	37	19	46269299	46269299	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	46269299	46269299	C	G	SNP	SIX5	ENST00000317578	human	ensembl	74_37	-1	known	missense	c.1680	p.K560N	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX5	HGNC	ENSG00000177045				40	0	0	9	5	35.7143
HIF3A	0	genome.wustl.edu	37	19	46815865	46815865	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	46815865	46815865	G	A	SNP	HIF3A	ENST00000377670	human	ensembl	74_37	+1	known	missense	c.980	p.R327Q	0.997	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAC	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440				200	0	0	66	12	15.3846
PRKD2	0	genome.wustl.edu	37	19	47207644	47207644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	47207644	47207644	C	T	SNP	PRKD2	ENST00000291281	human	ensembl	74_37	-1	known	missense	c.671	p.R224H	0.977	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD2	HGNC	ENSG00000105287				244	0	0	79	19	19.3878
NPAS1	0	genome.wustl.edu	37	19	47524418	47524418	+	Silent	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	47524418	47524418	C	A	SNP	NPAS1	ENST00000449844	human	ensembl	74_37	+1	known	silent	c.114	p.S38	0.084	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS1	HGNC	ENSG00000130751				29	0	0	4	4	50
CARD8	0	genome.wustl.edu	37	19	48734252	48734252	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	48734252	48734252	G	T	SNP	CARD8	ENST00000391898	human	ensembl	74_37	-1	known	missense	c.554	p.P185H	0.005	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD8	HGNC	ENSG00000105483				59	0	0	17	3	15
TBC1D17	0	genome.wustl.edu	37	19	50383626	50383626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	50383626	50383626	C	T	SNP	TBC1D17	ENST00000221543	human	ensembl	74_37	+1	known	missense	c.286	p.R96W	1.000	pfam_DUF3548	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D17	HGNC	ENSG00000104946				72	0	0	24	9	27.2727
SIGLEC9	0	genome.wustl.edu	37	19	51629040	51629040	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	51629040	51629040	A	C	SNP	SIGLEC9	ENST00000440804	human	ensembl	74_37	+1	known	missense	c.608	p.Q203P	0.030	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SIGLEC9	HGNC	ENSG00000129450				158	0	0	55	19	25.6757
SIGLEC8	0	genome.wustl.edu	37	19	51961026	51961026	+	RNA	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	51961026	51961026	G	C	SNP	SIGLEC8	ENST00000597352	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SIGLEC8	HGNC	ENSG00000105366				129	0	0	51	14	21.5385
NLRP12	0	genome.wustl.edu	37	19	54327332	54327332	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	54327332	54327332	C	A	SNP	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	missense	c.97	p.G33W	0.997	pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405				111	0	0	44	10	18.5185
MYADM	0	genome.wustl.edu	37	19	54377623	54377623	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	54377623	54377623	C	T	SNP	MYADM	ENST00000336967	human	ensembl	74_37	+1	known	silent	c.840	p.S280	0.000	pfam_Marvel	pfam_Marvel	-	no_errors	MYADM	HGNC	ENSG00000179820				99	0	0	44	13	22.807
TMC4	0	genome.wustl.edu	37	19	54676754	54676754	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	54676754	54676754	G	C	SNP	TMC4	ENST00000301187	human	ensembl	74_37	-1	known	missense	c.59	p.A20G	0.989	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608				331	1	0.301205	144	13	8.28025
LILRB2	0	genome.wustl.edu	37	19	54780272	54780272	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	54780272	54780272	C	A	SNP	LILRB2	ENST00000391749	human	ensembl	74_37	-1	known	missense	c.1522	p.V508L	0.001	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB2	HGNC	ENSG00000131042				77	0	0	32	3	8.57143
LENG8	0	genome.wustl.edu	37	19	54966670	54966670	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	54966670	54966670	C	A	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	missense	c.949	p.L317I	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615				60	0	0	28	6	17.6471
NLRP7	0	genome.wustl.edu	37	19	55451393	55451393	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	55451393	55451393	A	G	SNP	NLRP7	ENST00000446217	human	ensembl	74_37	-1	known	missense	c.878	p.L293P	0.000	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634				141	0	0	78	15	16.129
NLRP13	0	genome.wustl.edu	37	19	56423312	56423312	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	56423312	56423312	C	G	SNP	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	missense	c.1871	p.G624A	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572				112	0	0	72	12	14.2857
ZNF582	0	genome.wustl.edu	37	19	56896485	56896485	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	56896485	56896485	G	T	SNP	ZNF582	ENST00000301310	human	ensembl	74_37	-1	known	missense	c.301	p.Q101K	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF582	HGNC	ENSG00000018869				170	0	0	75	20	21.0526
PEG3	0	genome.wustl.edu	37	19	57328104	57328104	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	57328104	57328104	T	G	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.1706	p.K569T	0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				151	0	0	83	16	16.1616
ZNF304	0	genome.wustl.edu	37	19	57867521	57867521	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	57867521	57867521	A	G	SNP	ZNF304	ENST00000282286	human	ensembl	74_37	+1	known	missense	c.284	p.D95G	0.002	smart_Znf_C2H2-like,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF304	HGNC	ENSG00000131845				98	0	0	52	9	14.7541
ZSCAN18	0	genome.wustl.edu	37	19	58600105	58600105	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	58600105	58600105	C	G	SNP	ZSCAN18	ENST00000600404	human	ensembl	74_37	-1	known	missense	c.671	p.S224T	0.023	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN18	HGNC	ENSG00000121413				111	1	0.892857	23	26	53.0612
ZNF329	0	genome.wustl.edu	37	19	58640743	58640743	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	58640743	58640743	T	A	SNP	ZNF329	ENST00000358067	human	ensembl	74_37	-1	known	missense	c.128	p.Q43L	0.012	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF329	HGNC	ENSG00000181894				214	0	0	128	24	15.7895
ZNF358	0	genome.wustl.edu	37	19	7585755	7585755	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	7585755	7585755	A	G	SNP	ZNF358	ENST00000394341	human	ensembl	74_37	+1	known	missense	c.1627	p.T543A	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF358	HGNC	ENSG00000198816				172	0	0	49	17	25.7576
MYO1F	0	genome.wustl.edu	37	19	8612926	8612926	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	8612926	8612926	G	A	SNP	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	silent	c.1263	p.A421	0.797	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				158	0	0	74	18	19.5652
ZNF558	0	genome.wustl.edu	37	19	8932690	8932690	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	8932690	8932690	T	A	SNP	ZNF558	ENST00000301475	human	ensembl	74_37	-1	known	missense	c.109	p.S37C	0.537	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF558	HGNC	ENSG00000167785				237	0	0	91	19	17.2727
MUC16	0	genome.wustl.edu	37	19	9076901	9076901	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	9076901	9076901	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.10545	p.H3515	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				268	0	0	99	19	16.1017
MUC16	0	genome.wustl.edu	37	19	9082878	9082878	+	Silent	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	9082878	9082878	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.8937	p.T2979	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				178	0	0	93	19	16.9643
MUC16	0	genome.wustl.edu	37	19	9085752	9085752	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	9085752	9085752	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.6063	p.S2021	0.193	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				154	0	0	75	12	13.7931
ZNF121	0	genome.wustl.edu	37	19	9677679	9677679	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	9677679	9677679	T	C	SNP	ZNF121	ENST00000586602	human	ensembl	74_37	-1	known	missense	c.110	p.D37G	0.984	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF121	HGNC	ENSG00000197961				92	0	0	44	13	22.807
FBXL12	0	genome.wustl.edu	37	19	9921757	9921757	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	9921757	9921757	G	C	SNP	FBXL12	ENST00000247977	human	ensembl	74_37	-1	known	missense	c.796	p.P266A	0.450	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL12	HGNC	ENSG00000127452				49	0	0	18	3	14.2857
SLC9A4	0	genome.wustl.edu	37	2	103095359	103095359	+	Silent	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	103095359	103095359	G	C	SNP	SLC9A4	ENST00000295269	human	ensembl	74_37	+1	known	silent	c.318	p.V106	0.456	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251				128	0	0	47	8	14.5455
SLC9A2	0	genome.wustl.edu	37	2	103281692	103281692	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	103281692	103281692	C	T	SNP	SLC9A2	ENST00000233969	human	ensembl	74_37	+1	known	missense	c.887	p.A296V	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616				182	0	0	117	8	6.4
PSD4	0	genome.wustl.edu	37	2	113953852	113953852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	113953852	113953852	G	A	SNP	PSD4	ENST00000245796	human	ensembl	74_37	+1	known	missense	c.2354	p.R785Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD4	HGNC	ENSG00000125637				52	0	0	26	7	21.2121
SNTG2	0	genome.wustl.edu	37	2	1251209	1251209	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	1251209	1251209	T	C	SNP	SNTG2	ENST00000308624	human	ensembl	74_37	+1	known	silent	c.999	p.T333	0.007	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554				61	0	0	32	3	8.57143
RAB6C	0	genome.wustl.edu	37	2	130738406	130738406	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	130738406	130738406	T	C	SNP	RAB6C	ENST00000410061	human	ensembl	74_37	+1	known	silent	c.718	p.L240	0.952	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6C	HGNC	ENSG00000222014				166	0	0	73	12	14.1176
MAP3K19	0	genome.wustl.edu	37	2	135756477	135756477	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	135756477	135756477	C	T	SNP	MAP3K19	ENST00000375845	human	ensembl	74_37	-1	known	silent	c.405	p.K135	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K19	HGNC	ENSG00000176601				123	0	0	77	11	12.5
THSD7B	0	genome.wustl.edu	37	2	137872832	137872832	+	Silent	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	137872832	137872832	A	T	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	silent	c.1338	p.V446	0.000	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				38	0	0	21	4	16
LRP1B	0	genome.wustl.edu	37	2	141260572	141260572	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	141260572	141260572	A	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.8622	p.H2874Q	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				121	0	0	78	14	15.2174
TPO	0	genome.wustl.edu	37	2	1418192	1418192	+	Silent	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	1418192	1418192	C	G	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	silent	c.12	p.L4	0.000	NULL	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				37	0	0	31	3	8.82353
ZEB2	0	genome.wustl.edu	37	2	145156151	145156151	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	145156151	145156151	T	A	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.2603	p.E868V	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				183	0	0	73	15	17.0455
ZEB2	0	genome.wustl.edu	37	2	145156152	145156152	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	145156152	145156152	C	A	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	nonsense	c.2602	p.E868*	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				182	0	0	70	15	17.6471
GPD2	0	genome.wustl.edu	37	2	157370007	157370007	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	157370007	157370007	C	T	SNP	GPD2	ENST00000310454	human	ensembl	74_37	+1	known	silent	c.660	p.D220	0.762	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_G3P_DH_FAD-dep	-	no_errors	GPD2	HGNC	ENSG00000115159				80	0	0	60	10	14.2857
COBLL1	0	genome.wustl.edu	37	2	165548759	165548759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	165548759	165548759	G	A	SNP	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	missense	c.3587	p.S1196L	1.000	pfscan_WH2_dom	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				82	0	0	40	8	16.6667
TTC21B	0	genome.wustl.edu	37	2	166767931	166767931	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	166767931	166767931	A	G	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	silent	c.2367	p.N789	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				104	0	0	73	10	12.0482
XIRP2	0	genome.wustl.edu	37	2	168104263	168104263	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	168104263	168104263	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.6361	p.V2121I	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				112	0	0	58	10	14.7059
ABCB11	0	genome.wustl.edu	37	2	169826018	169826018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	169826018	169826018	G	A	SNP	ABCB11	ENST00000263817	human	ensembl	74_37	-1	known	missense	c.1853	p.S618F	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB11	HGNC	ENSG00000073734				55	0	0	25	3	10.7143
LRP2	0	genome.wustl.edu	37	2	170083054	170083054	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	170083054	170083054	C	G	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.5272	p.G1758R	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				77	0	0	55	6	9.83607
TTN	0	genome.wustl.edu	37	2	179411492	179411492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	179411492	179411492	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.86959	p.R28987C	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				109	0	0	52	7	11.8644
TTN	0	genome.wustl.edu	37	2	179415859	179415859	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	179415859	179415859	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.83695	p.R27899C	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				66	0	0	28	7	20
TTN	0	genome.wustl.edu	37	2	179440722	179440722	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	179440722	179440722	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.62433	p.T20811	0.998	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				219	0	0	116	22	15.942
TTN	0	genome.wustl.edu	37	2	179454276	179454276	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	179454276	179454276	T	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.54472	p.T18158S	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				113	0	0	61	19	23.75
TTN	0	genome.wustl.edu	37	2	179481230	179481230	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	179481230	179481230	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.40584	p.E13528D	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				240	1	0.414938	121	21	14.7887
TTN	0	genome.wustl.edu	37	2	179592042	179592042	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	179592042	179592042	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.16318	p.S5440P	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_V-set_subgr,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				75	0	0	24	7	22.5806
TTN	0	genome.wustl.edu	37	2	179596518	179596518	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	179596518	179596518	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.13352	p.Q4451R	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				202	0	0	87	21	19.4444
ZNF804A	0	genome.wustl.edu	37	2	185800571	185800571	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	185800571	185800571	G	T	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	nonsense	c.448	p.E150*	0.964	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				124	0	0	52	13	20
ANKAR	0	genome.wustl.edu	37	2	190602494	190602494	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	190602494	190602494	T	C	SNP	ANKAR	ENST00000313581	human	ensembl	74_37	+1	known	missense	c.3509	p.I1170T	0.753	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687				55	0	0	30	7	18.9189
HECW2	0	genome.wustl.edu	37	2	197157452	197157452	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	197157452	197157452	T	C	SNP	HECW2	ENST00000260983	human	ensembl	74_37	-1	known	missense	c.2837	p.N946S	1.000	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW2	HGNC	ENSG00000138411				55	0	0	24	5	17.2414
SGOL2	0	genome.wustl.edu	37	2	201435831	201435831	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	201435831	201435831	C	T	SNP	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	silent	c.762	p.N254	0.000	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535				139	0	0	68	4	5.55556
MAP2	0	genome.wustl.edu	37	2	210559927	210559927	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	210559927	210559927	C	T	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.3033	p.S1011	0.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				153	0	0	66	16	19.5122
MAP2	0	genome.wustl.edu	37	2	210560961	210560961	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	210560961	210560961	G	T	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	missense	c.4067	p.R1356I	1.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				242	1	0.411523	75	11	12.7907
ERBB4	0	genome.wustl.edu	37	2	212578277	212578277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	212578277	212578277	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.980	p.T327I	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				51	0	0	31	3	8.82353
BARD1	0	genome.wustl.edu	37	2	215593476	215593476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	215593476	215593476	C	T	SNP	BARD1	ENST00000260947	human	ensembl	74_37	-1	known	missense	c.2258	p.G753D	1.000	superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_Ankyrin_rpt,pfam_BRCT_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_Ankyrin_rpt,smart_BRCT_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BRCT_dom,pfscan_Znf_RING,prints_Ankyrin_rpt	-	no_errors	BARD1	HGNC	ENSG00000138376				85	0	0	36	5	12.1951
ABCA12	0	genome.wustl.edu	37	2	215896544	215896544	+	Splice_Site	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	215896544	215896544	C	G	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	splice_site	c.1061+1	e9+1	1.000	-	-	-	no_errors	ABCA12	HGNC	ENSG00000144452				185	0	0	68	15	18.0723
C2orf62	0	genome.wustl.edu	37	2	219222808	219222808	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	219222808	219222808	T	C	SNP	C2orf62	ENST00000289388	human	ensembl	74_37	+1	known	missense	c.368	p.F123S	1.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C2orf62	HGNC	ENSG00000158428				124	0	0	53	9	14.5161
PLCD4	0	genome.wustl.edu	37	2	219480484	219480484	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	219480484	219480484	C	T	SNP	PLCD4	ENST00000417849	human	ensembl	74_37	+1	known	nonsense	c.22	p.Q8*	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD4	HGNC	ENSG00000115556				97	0	0	33	7	17.5
ZNF142	0	genome.wustl.edu	37	2	219509363	219509363	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	219509363	219509363	C	A	SNP	ZNF142	ENST00000411696	human	ensembl	74_37	-1	known	missense	c.1876	p.D626Y	0.415	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568				97	0	0	44	4	8.33333
TMEM198	0	genome.wustl.edu	37	2	220412635	220412635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	220412635	220412635	G	A	SNP	TMEM198	ENST00000344458	human	ensembl	74_37	+1	known	missense	c.574	p.A192T	1.000	NULL	NULL	-	no_errors	TMEM198	HGNC	ENSG00000188760				27	0	0	11	3	21.4286
PAX3	0	genome.wustl.edu	37	2	223086046	223086046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	223086046	223086046	C	T	SNP	PAX3	ENST00000392069	human	ensembl	74_37	-1	known	missense	c.853	p.A285T	1.000	superfamily_Homeodomain-like	pfam_Paired_dom,pfam_Pax7,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903				284	0	0	132	30	18.5185
SGPP2	0	genome.wustl.edu	37	2	223339343	223339343	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	223339343	223339343	T	G	SNP	SGPP2	ENST00000321276	human	ensembl	74_37	+1	known	missense	c.276	p.F92L	0.999	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	SGPP2	HGNC	ENSG00000163082				138	0	0	85	17	16.6667
COL6A3	0	genome.wustl.edu	37	2	238280823	238280823	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	238280823	238280823	G	C	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.3837	p.D1279E	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				68	0	0	17	10	37.037
NCOA1	0	genome.wustl.edu	37	2	24928069	24928069	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	24928069	24928069	A	C	SNP	NCOA1	ENST00000348332	human	ensembl	74_37	+1	known	missense	c.1064	p.Q355P	1.000	superfamily_PAS,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA1	HGNC	ENSG00000084676				193	0	0	83	19	18.6275
CIB4	0	genome.wustl.edu	37	2	26864136	26864136	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	26864136	26864136	T	A	SNP	CIB4	ENST00000288861	human	ensembl	74_37	-1	known	missense	c.47	p.E16V	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CIB4	HGNC	ENSG00000157884				246	0	0	122	28	18.6667
COLEC11	0	genome.wustl.edu	37	2	3691583	3691583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	3691583	3691583	G	A	SNP	COLEC11	ENST00000418971	human	ensembl	74_37	+1	known	missense	c.733	p.G245S	0.999	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	COLEC11	HGNC	ENSG00000118004				174	0	0	65	5	7.14286
CDKL4	0	genome.wustl.edu	37	2	39411785	39411785	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	39411785	39411785	T	C	SNP	CDKL4	ENST00000378803	human	ensembl	74_37	-1	known	missense	c.739	p.T247A	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL4	HGNC	ENSG00000205111				31	0	0	24	4	14.2857
TSPYL6	0	genome.wustl.edu	37	2	54483113	54483113	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	54483113	54483113	A	G	SNP	TSPYL6	ENST00000317802	human	ensembl	74_37	-1	known	missense	c.176	p.V59A	0.001	NULL	pfam_NAP_family	-	no_errors	TSPYL6	HGNC	ENSG00000178021				162	0	0	60	13	17.8082
ANKRD53	0	genome.wustl.edu	37	2	71209753	71209753	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	71209753	71209753	C	T	SNP	ANKRD53	ENST00000272421	human	ensembl	74_37	+1	known	missense	c.829	p.R277C	0.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD53	HGNC	ENSG00000144031				144	0	0	54	14	20.5882
DQX1	0	genome.wustl.edu	37	2	74746867	74746867	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	74746867	74746867	G	C	SNP	DQX1	ENST00000393951	human	ensembl	74_37	-1	known	missense	c.1622	p.A541G	0.956	superfamily_P-loop_NTPase	pfam_Helicase-assoc_dom,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DQX1	HGNC	ENSG00000144045				89	0	0	52	12	18.75
LRRTM4	0	genome.wustl.edu	37	2	77746530	77746530	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	77746530	77746530	G	A	SNP	LRRTM4	ENST00000409911	human	ensembl	74_37	-1	known	silent	c.468	p.G156	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204				81	0	0	46	10	17.8571
REG1B	0	genome.wustl.edu	37	2	79312400	79312400	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	79312400	79312400	T	G	SNP	REG1B	ENST00000305089	human	ensembl	74_37	-1	known	missense	c.443	p.K148T	0.052	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	REG1B	HGNC	ENSG00000172023				44	0	0	28	7	20
EIF2AK3	0	genome.wustl.edu	37	2	88879049	88879049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	88879049	88879049	G	A	SNP	EIF2AK3	ENST00000303236	human	ensembl	74_37	-1	known	missense	c.1873	p.R625C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071				152	0	0	70	4	5.40541
ADAM17	0	genome.wustl.edu	37	2	9666322	9666322	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	9666322	9666322	G	A	SNP	ADAM17	ENST00000310823	human	ensembl	74_37	-1	known	missense	c.671	p.T224M	1.000	pfscan_Peptidase_M12B	pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM17	HGNC	ENSG00000151694				223	0	0	91	23	20.1754
NEURL3	0	genome.wustl.edu	37	2	97166255	97166255	+	RNA	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	97166255	97166255	C	T	SNP	NEURL3	ENST00000310865	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.982	-	-	-	no_errors	NEURL3	HGNC	ENSG00000163121				16	0	0	5	3	37.5
SEC23B	0	genome.wustl.edu	37	20	18511371	18511371	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	18511371	18511371	A	G	SNP	SEC23B	ENST00000262544	human	ensembl	74_37	+1	known	missense	c.1157	p.Q386R	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23B	HGNC	ENSG00000101310				124	0	0	57	12	17.3913
NINL	0	genome.wustl.edu	37	20	25457060	25457060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	25457060	25457060	C	T	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.2867	p.R956Q	0.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				66	0	0	26	11	29.7297
TM9SF4	0	genome.wustl.edu	37	20	30720904	30720904	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	30720904	30720904	A	G	SNP	TM9SF4	ENST00000398022	human	ensembl	74_37	+1	known	missense	c.104	p.H35R	1.000	NULL	pfam_EMP70	-	no_errors	TM9SF4	HGNC	ENSG00000101337				88	0	0	38	3	7.31707
ASXL1	0	genome.wustl.edu	37	20	31022374	31022374	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	31022374	31022374	G	A	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	missense	c.1859	p.R620H	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				69	0	0	35	3	7.89474
SLC4A11	0	genome.wustl.edu	37	20	3209270	3209270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	3209270	3209270	G	A	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	missense	c.2405	p.P802L	1.000	pfam_HCO3_transpt_C	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				130	0	0	51	7	12.069
FAM83D	0	genome.wustl.edu	37	20	37580587	37580587	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	37580587	37580587	G	A	SNP	FAM83D	ENST00000217429	human	ensembl	74_37	+1	known	silent	c.1272	p.E424	0.566	NULL	pfam_DUF1669	-	no_errors	FAM83D	HGNC	ENSG00000101447				90	0	0	57	6	9.52381
PTPRT	0	genome.wustl.edu	37	20	41306787	41306787	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	41306787	41306787	G	T	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.872	p.P291H	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				42	0	0	30	5	14.2857
MYBL2	0	genome.wustl.edu	37	20	42343837	42343837	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	42343837	42343837	T	C	SNP	MYBL2	ENST00000217026	human	ensembl	74_37	+1	known	silent	c.1888	p.L630	0.986	NULL	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057				516	0	0	257	35	11.9863
RIMS4	0	genome.wustl.edu	37	20	43385563	43385563	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	43385563	43385563	C	G	SNP	RIMS4	ENST00000541604	human	ensembl	74_37	-1	known	missense	c.570	p.E190D	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RIMS4	HGNC	ENSG00000101098				468	0	0	247	52	17.3913
MATN4	0	genome.wustl.edu	37	20	43932985	43932985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	43932985	43932985	C	T	SNP	MATN4	ENST00000372754	human	ensembl	74_37	-1	known	missense	c.526	p.A176T	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN4	HGNC	ENSG00000124159				79	0	0	40	4	9.09091
PIGT	0	genome.wustl.edu	37	20	44047544	44047544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	44047544	44047544	G	A	SNP	PIGT	ENST00000279036	human	ensembl	74_37	+1	known	missense	c.418	p.A140T	1.000	pfam_PIG-T	pfam_PIG-T	-	no_errors	PIGT	HGNC	ENSG00000124155				188	0	0	100	21	17.3554
ZSWIM1	0	genome.wustl.edu	37	20	44511929	44511929	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	44511929	44511929	G	C	SNP	ZSWIM1	ENST00000372520	human	ensembl	74_37	+1	known	missense	c.698	p.W233S	1.000	NULL	pfam_Znf_SWIM,pfscan_Znf_SWIM	-	no_errors	ZSWIM1	HGNC	ENSG00000168612				94	0	0	75	14	15.7303
SULF2	0	genome.wustl.edu	37	20	46365657	46365657	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	46365657	46365657	G	A	SNP	SULF2	ENST00000359930	human	ensembl	74_37	-1	known	missense	c.205	p.R69C	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562				131	0	0	53	7	11.6667
CASS4	0	genome.wustl.edu	37	20	55027385	55027385	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	55027385	55027385	T	C	SNP	CASS4	ENST00000360314	human	ensembl	74_37	+1	known	missense	c.1153	p.S385P	0.001	NULL	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589				90	0	0	53	9	14.5161
TFAP2C	0	genome.wustl.edu	37	20	55211736	55211736	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	55211736	55211736	A	G	SNP	TFAP2C	ENST00000201031	human	ensembl	74_37	+1	known	silent	c.993	p.A331	0.059	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_gamma	-	no_errors	TFAP2C	HGNC	ENSG00000087510				114	0	0	63	14	18.1818
NELFCD	0	genome.wustl.edu	37	20	57568778	57568778	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	57568778	57568778	C	T	SNP	NELFCD	ENST00000602795	human	ensembl	74_37	+1	known	silent	c.1594	p.L532	1.000	pfam_TH1	pfam_TH1	-	no_errors	NELFCD	HGNC	ENSG00000101158				170	0	0	117	9	7.14286
ZNF831	0	genome.wustl.edu	37	20	57766555	57766555	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	57766555	57766555	A	C	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.481	p.K161Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				296	0	0	126	18	12.5
MCM8	0	genome.wustl.edu	37	20	5948171	5948171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	5948171	5948171	G	A	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	missense	c.965	p.S322N	1.000	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				128	0	0	40	28	41.1765
SS18L1	0	genome.wustl.edu	37	20	60733969	60733969	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	60733969	60733969	G	C	SNP	SS18L1	ENST00000370848	human	ensembl	74_37	+1	known	missense	c.126	p.Q42H	0.009	NULL	pfam_SS18_fam	-	no_errors	SS18L1	HGNC	ENSG00000184402				291	0	0	121	34	21.9355
PRPF6	0	genome.wustl.edu	37	20	62657362	62657362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	62657362	62657362	G	A	SNP	PRPF6	ENST00000266079	human	ensembl	74_37	+1	known	missense	c.1979	p.R660Q	1.000	smart_HAT	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161				278	0	0	169	25	12.8866
SAMSN1	0	genome.wustl.edu	37	21	15870763	15870763	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	21	15870763	15870763	T	G	SNP	SAMSN1	ENST00000400566	human	ensembl	74_37	-1	known	missense	c.919	p.I307L	1.000	superfamily_SAM/pointed	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307				55	0	0	42	12	22.2222
TMPRSS15	0	genome.wustl.edu	37	21	19666644	19666644	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	21	19666644	19666644	C	A	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	missense	c.2429	p.C810F	0.999	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				214	0	0	49	19	27.9412
RWDD2B	0	genome.wustl.edu	37	21	30380401	30380401	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	21	30380401	30380401	C	A	SNP	RWDD2B	ENST00000493196	human	ensembl	74_37	-1	known	missense	c.406	p.D136Y	1.000	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	pfam_DUF1115,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	-	no_errors	RWDD2B	HGNC	ENSG00000156253				68	0	0	34	11	24.4444
KRTAP24-1	0	genome.wustl.edu	37	21	31654507	31654507	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	21	31654507	31654507	G	A	SNP	KRTAP24-1	ENST00000340345	human	ensembl	74_37	-1	known	silent	c.744	p.S248	0.957	NULL	pfam_KRTAP_PMG	-	no_errors	KRTAP24-1	HGNC	ENSG00000188694				142	0	0	62	5	7.46269
TIAM1	0	genome.wustl.edu	37	21	32492734	32492734	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	21	32492734	32492734	A	G	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	silent	c.4728	p.V1576	0.309	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				75	0	0	21	7	25
PTTG1IP	0	genome.wustl.edu	37	21	46271452	46271452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	21	46271452	46271452	C	T	SNP	PTTG1IP	ENST00000445724	human	ensembl	74_37	-1	known	missense	c.259	p.A87T	0.000	NULL	NULL	-	no_errors	PTTG1IP	HGNC	ENSG00000183255				144	0	0	55	4	6.77966
DGCR2	0	genome.wustl.edu	37	22	19029346	19029346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	19029346	19029346	C	T	SNP	DGCR2	ENST00000263196	human	ensembl	74_37	-1	known	missense	c.1133	p.R378H	1.000	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,smart_VWF_C,pfscan_LDrepeatLR_classA_rpt,pfscan_C-type_lectin	-	no_errors	DGCR2	HGNC	ENSG00000070413				106	0	0	37	8	17.7778
HIRA	0	genome.wustl.edu	37	22	19363188	19363188	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	19363188	19363188	C	A	SNP	HIRA	ENST00000263208	human	ensembl	74_37	-1	known	missense	c.1741	p.A581S	0.368	NULL	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084				122	0	0	52	7	11.8644
TBX1	0	genome.wustl.edu	37	22	19766785	19766785	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	19766785	19766785	C	A	SNP	TBX1	ENST00000329705	human	ensembl	74_37	+1	known	missense	c.1052	p.S351Y	0.005	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX1	HGNC	ENSG00000184058				105	0	0	34	10	22.7273
ZDHHC8	0	genome.wustl.edu	37	22	20130522	20130522	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	20130522	20130522	C	G	SNP	ZDHHC8	ENST00000405930	human	ensembl	74_37	+1	known	missense	c.1369	p.P457A	0.997	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904				41	0	0	19	8	29.6296
RTN4R	0	genome.wustl.edu	37	22	20230373	20230373	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	20230373	20230373	G	A	SNP	RTN4R	ENST00000043402	human	ensembl	74_37	-1	known	nonsense	c.283	p.R95*	0.721	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4R	HGNC	ENSG00000040608				75	0	0	29	4	12.1212
P2RX6	0	genome.wustl.edu	37	22	21377428	21377428	+	Silent	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	21377428	21377428	C	A	SNP	P2RX6	ENST00000413302	human	ensembl	74_37	+1	known	silent	c.579	p.A193	0.005	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X6_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX6	HGNC	ENSG00000099957				167	0	0	74	15	16.8539
CCDC116	0	genome.wustl.edu	37	22	21988490	21988490	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	21988490	21988490	C	A	SNP	CCDC116	ENST00000292779	human	ensembl	74_37	+1	known	missense	c.252	p.D84E	0.941	NULL	NULL	-	no_errors	CCDC116	HGNC	ENSG00000161180				194	0	0	51	12	19.0476
ZNF280B	0	genome.wustl.edu	37	22	22843016	22843016	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	22843016	22843016	T	C	SNP	ZNF280B	ENST00000360412	human	ensembl	74_37	-1	known	silent	c.708	p.P236	0.021	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280B	HGNC	ENSG00000198477				133	0	0	85	19	18.2692
ENSG00000211683	0	genome.wustl.edu	37	22	23981009	23981009	+	RNA	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	23981009	23981009	G	A	SNP	ENSG00000211683	ENST00000390329	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.480	-	-	-	no_errors	KB-1572G7.3	Clone_based_vega_gene	ENSG00000211683				86	0	0	43	6	12.2449
GGT1	0	genome.wustl.edu	37	22	25024357	25024357	+	Splice_Site	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	25024357	25024357	T	C	SNP	GGT1	ENST00000248923	human	ensembl	74_37	+1	known	splice_site	c.1563+2	e11+2	1.000	-	-	-	no_errors	GGT1	HGNC	ENSG00000100031				95	0	0	43	6	12.2449
CRYBB3	0	genome.wustl.edu	37	22	25603126	25603126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	25603126	25603126	C	T	SNP	CRYBB3	ENST00000215855	human	ensembl	74_37	+1	known	missense	c.583	p.R195C	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB3	HGNC	ENSG00000100053				90	0	0	39	8	17.0213
MN1	0	genome.wustl.edu	37	22	28193409	28193409	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	28193409	28193409	C	T	SNP	MN1	ENST00000302326	human	ensembl	74_37	-1	known	silent	c.3123	p.V1041	1.000	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184				154	0	0	42	8	16
OSM	0	genome.wustl.edu	37	22	30662777	30662777	+	Silent	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	30662777	30662777	C	A	SNP	OSM	ENST00000215781	human	ensembl	74_37	-1	known	silent	c.12	p.L4	0.002	pfam_Leukemia_IF/oncostatin	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin	-	no_errors	OSM	HGNC	ENSG00000099985				90	0	0	23	3	11.5385
HMOX1	0	genome.wustl.edu	37	22	35782986	35782986	+	Silent	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	35782986	35782986	C	A	SNP	HMOX1	ENST00000216117	human	ensembl	74_37	+1	known	silent	c.453	p.A151	0.010	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase,prints_Haem_Oase	-	no_errors	HMOX1	HGNC	ENSG00000100292				107	0	0	69	5	6.75676
C1QTNF6	0	genome.wustl.edu	37	22	37578760	37578760	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	37578760	37578760	G	C	SNP	C1QTNF6	ENST00000337843	human	ensembl	74_37	-1	known	missense	c.305	p.P102R	0.853	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF6	HGNC	ENSG00000133466				25	0	0	15	5	25
LOC101927051	0	genome.wustl.edu	37	22	38038872	38038872	+	RNA	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	38038872	38038872	G	A	SNP	LOC101927051	ENST00000456099	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	Z83844.1	Clone_based_vega_gene	ENSG00000233360				118	0	0	43	9	17.3077
SOX10	0	genome.wustl.edu	37	22	38370125	38370125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	38370125	38370125	C	T	SNP	SOX10	ENST00000360880	human	ensembl	74_37	-1	known	missense	c.778	p.G260R	1.000	NULL	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX10	HGNC	ENSG00000100146				315	0	0	123	17	12.1429
FAM83F	0	genome.wustl.edu	37	22	40417839	40417839	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	40417839	40417839	T	A	SNP	FAM83F	ENST00000333407	human	ensembl	74_37	+1	known	missense	c.1325	p.L442H	0.004	NULL	pfam_DUF1669	-	no_errors	FAM83F	HGNC	ENSG00000133477				78	0	0	27	8	22.8571
PACSIN2	0	genome.wustl.edu	37	22	43280459	43280459	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	43280459	43280459	G	A	SNP	PACSIN2	ENST00000263246	human	ensembl	74_37	-1	known	missense	c.718	p.R240C	1.000	NULL	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN2	HGNC	ENSG00000100266				176	0	0	66	11	14.2857
TTLL12	0	genome.wustl.edu	37	22	43569737	43569737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	43569737	43569737	C	T	SNP	TTLL12	ENST00000216129	human	ensembl	74_37	-1	known	missense	c.1325	p.R442Q	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL12	HGNC	ENSG00000100304				92	0	0	27	3	10
SMC1B	0	genome.wustl.edu	37	22	45755702	45755702	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	45755702	45755702	C	A	SNP	SMC1B	ENST00000357450	human	ensembl	74_37	-1	known	missense	c.2845	p.D949Y	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_t-SNARE	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935				133	0	0	43	17	28.3333
GTSE1	0	genome.wustl.edu	37	22	46704360	46704360	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	46704360	46704360	C	T	SNP	GTSE1	ENST00000454366	human	ensembl	74_37	+1	known	silent	c.282	p.A94	0.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218				271	1	0.367647	71	18	20.2247
CELSR1	0	genome.wustl.edu	37	22	46931942	46931942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	46931942	46931942	G	A	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.1126	p.R376C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				63	0	0	21	6	22.2222
MOV10L1	0	genome.wustl.edu	37	22	50530569	50530569	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	50530569	50530569	A	G	SNP	MOV10L1	ENST00000262794	human	ensembl	74_37	+1	known	silent	c.237	p.A79	0.000	superfamily_NA-bd_OB-fold	superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold	-	no_errors	MOV10L1	HGNC	ENSG00000073146				146	0	0	59	12	16.9014
TYMP	0	genome.wustl.edu	37	22	50967983	50967983	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	50967983	50967983	C	T	SNP	TYMP	ENST00000252029	human	ensembl	74_37	-1	known	silent	c.156	p.A52	0.010	pfam_Glycosyl_Trfase_fam3_N_dom,superfamily_Glycosyl_Trfase_fam3_N_dom,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	pfam_Glycosyl_Trfase_fam3,pfam_Glycosyl_Trfase_fam3_N_dom,pfam_PYNP_C,superfamily_Glycosyl_Trfase_fam3,superfamily_PYNP_C,superfamily_Glycosyl_Trfase_fam3_N_dom,smart_PYNP_C,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	-	no_errors	TYMP	HGNC	ENSG00000025708				124	0	0	36	8	18.1818
PHLDB2	0	genome.wustl.edu	37	3	111632518	111632518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	111632518	111632518	G	A	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	missense	c.1688	p.S563N	0.992	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824				402	0	0	156	41	20.8122
NR1I2	0	genome.wustl.edu	37	3	119531555	119531555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	119531555	119531555	G	A	SNP	NR1I2	ENST00000337940	human	ensembl	74_37	+1	known	missense	c.659	p.G220D	0.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1I2	HGNC	ENSG00000144852				235	0	0	108	10	8.47458
SEC22A	0	genome.wustl.edu	37	3	122928161	122928161	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	122928161	122928161	T	C	SNP	SEC22A	ENST00000309934	human	ensembl	74_37	+1	known	missense	c.97	p.C33R	1.000	superfamily_Longin-like_dom,pfscan_Longin_dom	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	SEC22A	HGNC	ENSG00000121542				87	0	0	51	5	8.92857
RAF1	0	genome.wustl.edu	37	3	12641686	12641686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	12641686	12641686	C	T	SNP	RAF1	ENST00000442415	human	ensembl	74_37	-1	known	missense	c.1015	p.A339T	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	RAF1	HGNC	ENSG00000132155				146	0	0	77	11	12.5
ATR	0	genome.wustl.edu	37	3	142259852	142259852	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	142259852	142259852	T	A	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	missense	c.3475	p.M1159L	1.000	pfam_UME,superfamily_ARM-type_fold,smart_UME	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				76	0	0	36	17	32.0755
CHST2	0	genome.wustl.edu	37	3	142840454	142840454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	142840454	142840454	G	A	SNP	CHST2	ENST00000309575	human	ensembl	74_37	+1	known	missense	c.796	p.A266T	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040				29	0	0	14	5	26.3158
IGSF10	0	genome.wustl.edu	37	3	151160982	151160982	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	151160982	151160982	A	G	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.5753	p.I1918T	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				190	0	0	101	41	28.8732
PLCH1	0	genome.wustl.edu	37	3	155271897	155271897	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	155271897	155271897	C	T	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	silent	c.1122	p.E374	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				100	0	0	65	15	18.75
MFSD1	0	genome.wustl.edu	37	3	158545116	158545116	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	158545116	158545116	T	C	SNP	MFSD1	ENST00000415822	human	ensembl	74_37	+1	known	missense	c.1531	p.S511P	0.158	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD1	HGNC	ENSG00000118855				87	0	0	59	22	27.1605
GHSR	0	genome.wustl.edu	37	3	172166108	172166108	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	172166108	172166108	G	A	SNP	GHSR	ENST00000241256	human	ensembl	74_37	-1	known	silent	c.96	p.D32	0.026	prints_GHS-R	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R,prints_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853				55	0	0	27	3	10
NLGN1	0	genome.wustl.edu	37	3	173997321	173997321	+	Silent	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	173997321	173997321	C	A	SNP	NLGN1	ENST00000401917	human	ensembl	74_37	+1	known	silent	c.1650	p.P550	0.901	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760				71	0	0	59	8	11.9403
NLGN1	0	genome.wustl.edu	37	3	173998407	173998407	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	173998407	173998407	G	C	SNP	NLGN1	ENST00000401917	human	ensembl	74_37	+1	known	missense	c.1906	p.E636Q	1.000	pfam_CarbesteraseB,prints_Neuroligin	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760				161	0	0	108	20	15.625
EPHB3	0	genome.wustl.edu	37	3	184295229	184295229	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	184295229	184295229	G	T	SNP	EPHB3	ENST00000330394	human	ensembl	74_37	+1	known	missense	c.1453	p.D485Y	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580				165	0	0	78	14	15.2174
OPA1	0	genome.wustl.edu	37	3	193335014	193335014	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	193335014	193335014	G	C	SNP	OPA1	ENST00000361510	human	ensembl	74_37	+1	known	missense	c.496	p.A166P	0.705	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,prints_Dynamin_SF	-	no_errors	OPA1	HGNC	ENSG00000198836				117	0	0	39	13	25
LINC00969	0	genome.wustl.edu	37	3	195390680	195390680	+	RNA	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	195390680	195390680	C	T	SNP	LINC00969	ENST00000452844	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				32	0	0	18	3	14.2857
SUSD5	0	genome.wustl.edu	37	3	33194483	33194483	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	33194483	33194483	G	A	SNP	SUSD5	ENST00000309558	human	ensembl	74_37	-1	known	silent	c.1641	p.P547	0.000	NULL	pfam_Link,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Link,pfscan_Link,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD5	HGNC	ENSG00000173705				32	0	0	26	10	27.7778
LRRC2	0	genome.wustl.edu	37	3	46586647	46586647	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	46586647	46586647	C	T	SNP	LRRC2	ENST00000296144	human	ensembl	74_37	-1	known	silent	c.222	p.R74	0.509	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC2	HGNC	ENSG00000163827				252	0	0	119	32	21.1921
CELSR3	0	genome.wustl.edu	37	3	48691836	48691836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	48691836	48691836	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.5038	p.P1680S	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				72	0	0	22	9	29.0323
CELSR3	0	genome.wustl.edu	37	3	48696932	48696932	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	48696932	48696932	G	T	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.3136	p.P1046T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				277	1	0.359712	129	31	19.375
P4HTM	0	genome.wustl.edu	37	3	49042339	49042339	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	49042339	49042339	C	G	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.933	p.S311R	0.096	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				171	0	0	53	22	29.3333
RNF123	0	genome.wustl.edu	37	3	49740928	49740928	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	49740928	49740928	G	T	SNP	RNF123	ENST00000327697	human	ensembl	74_37	+1	known	missense	c.1819	p.G607C	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068				60	0	0	26	3	10.3448
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				198	1	0.502513	50	44	46.8085
GRM2	0	genome.wustl.edu	37	3	51749114	51749114	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	51749114	51749114	G	A	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	missense	c.1325	p.R442H	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_2	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				119	0	0	31	8	20.5128
PARP3	0	genome.wustl.edu	37	3	51981822	51981822	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	51981822	51981822	G	C	SNP	PARP3	ENST00000398755	human	ensembl	74_37	+1	known	missense	c.1364	p.R455T	0.995	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880				301	0	0	102	14	12.069
PCBP4	0	genome.wustl.edu	37	3	51992870	51992870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	51992870	51992870	G	A	SNP	PCBP4	ENST00000395014	human	ensembl	74_37	-1	known	missense	c.922	p.R308W	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP4	HGNC	ENSG00000090097				185	0	0	71	12	14.4578
NT5DC2	0	genome.wustl.edu	37	3	52562296	52562296	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	52562296	52562296	A	T	SNP	NT5DC2	ENST00000422318	human	ensembl	74_37	-1	known	missense	c.674	p.F225Y	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5DC2	HGNC	ENSG00000168268				100	0	0	63	10	13.6986
CNTN3	0	genome.wustl.edu	37	3	74349051	74349051	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	74349051	74349051	C	T	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	missense	c.2134	p.G712R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				88	0	0	40	7	14.8936
SRGAP3	0	genome.wustl.edu	37	3	9027389	9027389	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	9027389	9027389	G	A	SNP	SRGAP3	ENST00000383836	human	ensembl	74_37	-1	known	silent	c.3114	p.T1038	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220				82	0	0	24	10	29.4118
SRGAP3	0	genome.wustl.edu	37	3	9074409	9074409	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	9074409	9074409	C	A	SNP	SRGAP3	ENST00000383836	human	ensembl	74_37	-1	known	missense	c.1464	p.Q488H	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220				129	0	0	48	18	27.2727
LHFPL4	0	genome.wustl.edu	37	3	9594221	9594221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	9594221	9594221	C	T	SNP	LHFPL4	ENST00000287585	human	ensembl	74_37	-1	known	missense	c.143	p.G48D	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL4	HGNC	ENSG00000156959				89	0	0	24	5	17.2414
TADA3	0	genome.wustl.edu	37	3	9831526	9831526	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	9831526	9831526	G	C	SNP	TADA3	ENST00000301964	human	ensembl	74_37	-1	known	missense	c.329	p.A110G	0.992	NULL	pfam_Histone_AcTrfase_su3	-	no_errors	TADA3	HGNC	ENSG00000171148				124	0	0	85	17	16.6667
CRELD1	0	genome.wustl.edu	37	3	9982881	9982881	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	9982881	9982881	A	G	SNP	CRELD1	ENST00000326434	human	ensembl	74_37	+1	known	missense	c.724	p.K242E	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_EG-like_dom	pfam_DUF3456,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_Furin_repeat,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	CRELD1	HGNC	ENSG00000163703				95	0	0	48	9	15.7895
CMSS1	0	genome.wustl.edu	37	3	99895194	99895194	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	99895194	99895194	A	G	SNP	CMSS1	ENST00000421999	human	ensembl	74_37	+1	known	missense	c.691	p.K231E	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	-	no_errors	CMSS1	HGNC	ENSG00000184220				75	0	0	38	7	15.5556
TET2	0	genome.wustl.edu	37	4	106155934	106155934	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	106155934	106155934	A	C	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.835	p.T279P	1.000	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769				55	0	0	28	4	12.5
INTS12	0	genome.wustl.edu	37	4	106616707	106616707	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	106616707	106616707	A	C	SNP	INTS12	ENST00000340139	human	ensembl	74_37	-1	known	missense	c.275	p.V92G	0.039	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785				124	0	0	48	15	23.8095
INTU	0	genome.wustl.edu	37	4	128564847	128564847	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	128564847	128564847	G	A	SNP	INTU	ENST00000335251	human	ensembl	74_37	+1	known	silent	c.318	p.K106	0.105	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066				186	0	0	75	21	21.875
PCDH18	0	genome.wustl.edu	37	4	138451552	138451552	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	138451552	138451552	A	C	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	missense	c.1691	p.L564R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				260	0	0	149	39	20.7447
ZNF827	0	genome.wustl.edu	37	4	146697023	146697023	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	146697023	146697023	G	C	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	missense	c.2611	p.L871V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612				150	0	0	48	5	9.43396
LRBA	0	genome.wustl.edu	37	4	151849711	151849711	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	151849711	151849711	A	T	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.506	p.L169Q	0.995	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				59	0	0	23	5	17.8571
FHDC1	0	genome.wustl.edu	37	4	153896551	153896551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	153896551	153896551	C	T	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	missense	c.2108	p.P703L	0.007	NULL	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				107	0	0	37	9	19.5652
TRIM2	0	genome.wustl.edu	37	4	154191516	154191516	+	Silent	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	154191516	154191516	C	A	SNP	TRIM2	ENST00000338700	human	ensembl	74_37	+1	known	silent	c.60	p.G20	1.000	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654				212	0	0	70	12	14.6341
PLRG1	0	genome.wustl.edu	37	4	155461762	155461762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	155461762	155461762	C	T	SNP	PLRG1	ENST00000393905	human	ensembl	74_37	-1	known	missense	c.923	p.R308Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PLRG1	HGNC	ENSG00000171566				97	0	0	51	5	8.92857
FGG	0	genome.wustl.edu	37	4	155533225	155533225	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	155533225	155533225	T	G	SNP	FGG	ENST00000336098	human	ensembl	74_37	-1	known	missense	c.252	p.K84N	0.291	pfam_Fibrinogen_a/b/g_coil_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGG	HGNC	ENSG00000171557				68	0	0	36	3	7.69231
ASIC5	0	genome.wustl.edu	37	4	156775402	156775402	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	156775402	156775402	C	A	SNP	ASIC5	ENST00000537611	human	ensembl	74_37	-1	known	missense	c.412	p.V138F	0.994	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC5	HGNC	ENSG00000256394				123	0	0	59	10	14.4928
TDO2	0	genome.wustl.edu	37	4	156825181	156825181	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	156825181	156825181	A	C	SNP	TDO2	ENST00000536354	human	ensembl	74_37	+1	known	missense	c.47	p.K16T	0.012	NULL	pfam_Trp_2_3_dOase	-	no_errors	TDO2	HGNC	ENSG00000151790				115	0	0	26	5	16.129
FAM198B	0	genome.wustl.edu	37	4	159092149	159092149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	159092149	159092149	G	A	SNP	FAM198B	ENST00000393807	human	ensembl	74_37	-1	known	missense	c.379	p.P127S	1.000	NULL	NULL	-	no_errors	FAM198B	HGNC	ENSG00000164125				171	0	0	69	26	27.3684
TLL1	0	genome.wustl.edu	37	4	166915670	166915670	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	166915670	166915670	G	A	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.499	p.G167R	1.000	pfam_Peptidase_M12A,smart_Peptidase_Metallo,pirsf_BMP_1/tolloid-like	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				76	0	0	50	11	18.0328
DHX15	0	genome.wustl.edu	37	4	24529428	24529428	+	RNA	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	24529428	24529428	T	A	SNP	DHX15	ENST00000504279	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DHX15	HGNC	ENSG00000109606				14	0	0	10	2	16.6667
DHX15	0	genome.wustl.edu	37	4	24529429	24529429	+	RNA	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	24529429	24529429	T	A	SNP	DHX15	ENST00000504279	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DHX15	HGNC	ENSG00000109606				14	0	0	11	2	15.3846
CCDC149	0	genome.wustl.edu	37	4	24838869	24838869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	24838869	24838869	C	T	SNP	CCDC149	ENST00000504487	human	ensembl	74_37	-1	known	missense	c.643	p.A215T	1.000	pfam_Coiled-coil_dom-contain_pr_149	pfam_Coiled-coil_dom-contain_pr_149	-	no_errors	CCDC149	HGNC	ENSG00000181982				66	0	0	29	4	12.1212
FAM193A	0	genome.wustl.edu	37	4	2696824	2696824	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	2696824	2696824	T	A	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	missense	c.2371	p.C791S	1.000	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				66	0	0	21	5	19.2308
PGM2	0	genome.wustl.edu	37	4	37848854	37848854	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	37848854	37848854	A	G	SNP	PGM2	ENST00000381967	human	ensembl	74_37	+1	known	missense	c.1220	p.N407S	1.000	pfam_A-D-PHexomutase_a/b/a-III,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM2	HGNC	ENSG00000169299				112	0	0	57	11	16.1765
LIAS	0	genome.wustl.edu	37	4	39465194	39465194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	39465194	39465194	G	A	SNP	LIAS	ENST00000261434	human	ensembl	74_37	+1	known	missense	c.362	p.G121E	1.000	pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	pfam_rSAM,smart_Elp3/MiaB/NifB,pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	-	no_errors	LIAS	HGNC	ENSG00000121897				49	0	0	29	3	9.375
GUF1	0	genome.wustl.edu	37	4	44684428	44684428	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	44684428	44684428	G	T	SNP	GUF1	ENST00000281543	human	ensembl	74_37	+1	known	missense	c.585	p.K195N	1.000	pfam_EF_GTP-bd_dom,pfam_Small_GTPase,superfamily_P-loop_NTPase,prints_EF_GTP-bd_dom,tigrfam_EF-4,tigrfam_Small_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_LepA_GTP-bd_C,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,pfam_Small_GTPase,superfamily_P-loop_NTPase,superfamily_EFG_III-V,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_EF-4,tigrfam_Small_GTP-bd_dom	-	no_errors	GUF1	HGNC	ENSG00000151806				115	0	0	72	15	17.2414
GABRA4	0	genome.wustl.edu	37	4	46967014	46967014	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	46967014	46967014	T	C	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	silent	c.1107	p.R369	0.863	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAa4_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				142	0	0	66	9	12
OCIAD1	0	genome.wustl.edu	37	4	48852083	48852083	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	48852083	48852083	C	T	SNP	OCIAD1	ENST00000264312	human	ensembl	74_37	+1	known	nonsense	c.361	p.R121*	0.096	NULL	pfam_OCIA	-	no_errors	OCIAD1	HGNC	ENSG00000109180				125	0	0	63	14	18.1818
LRRC66	0	genome.wustl.edu	37	4	52862042	52862042	+	Silent	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	52862042	52862042	T	G	SNP	LRRC66	ENST00000343457	human	ensembl	74_37	-1	known	silent	c.1146	p.S382	0.078	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993				74	0	0	34	10	22.7273
KIT	0	genome.wustl.edu	37	4	55594223	55594223	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	55594223	55594223	A	C	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	missense	c.1926	p.K642N	0.998	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404				150	0	0	59	8	11.9403
KDR	0	genome.wustl.edu	37	4	55958806	55958806	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	55958806	55958806	A	T	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	missense	c.3047	p.M1016K	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052				105	0	0	49	5	9.25926
CLOCK	0	genome.wustl.edu	37	4	56345861	56345861	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	56345861	56345861	T	G	SNP	CLOCK	ENST00000309964	human	ensembl	74_37	-1	known	missense	c.53	p.D18A	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat	-	no_errors	CLOCK	HGNC	ENSG00000134852				94	0	0	45	11	19.6429
TMPRSS11D	0	genome.wustl.edu	37	4	68693133	68693133	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	68693133	68693133	A	G	SNP	TMPRSS11D	ENST00000283916	human	ensembl	74_37	-1	known	silent	c.798	p.S266	0.000	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_SEA_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SEA_dom,pfscan_Peptidase_S1	-	no_errors	TMPRSS11D	HGNC	ENSG00000153802				75	0	0	51	9	15
SYT14L	0	genome.wustl.edu	37	4	68928301	68928301	+	RNA	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	68928301	68928301	G	A	SNP	SYT14L	ENST00000600441	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-35D5.1	Clone_based_vega_gene	ENSG00000215127				245	0	0	100	17	14.5299
TMPRSS11F	0	genome.wustl.edu	37	4	68930432	68930432	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	68930432	68930432	A	G	SNP	TMPRSS11F	ENST00000356291	human	ensembl	74_37	-1	known	missense	c.986	p.V329A	1.000	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SEA_dom,pfscan_Peptidase_S1	-	no_errors	TMPRSS11F	HGNC	ENSG00000198092				132	0	0	78	8	9.30233
RASSF6	0	genome.wustl.edu	37	4	74453644	74453644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	74453644	74453644	G	A	SNP	RASSF6	ENST00000342081	human	ensembl	74_37	-1	known	missense	c.391	p.R131C	1.000	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF6	HGNC	ENSG00000169435				112	0	0	83	6	6.74157
SCD5	0	genome.wustl.edu	37	4	83719567	83719567	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	83719567	83719567	G	A	SNP	SCD5	ENST00000319540	human	ensembl	74_37	-1	known	missense	c.124	p.R42W	0.981	NULL	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD5	HGNC	ENSG00000145284				94	0	0	22	4	15.3846
SEC31A	0	genome.wustl.edu	37	4	83783724	83783724	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	83783724	83783724	A	G	SNP	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	missense	c.1511	p.I504T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674				61	0	0	49	6	10.9091
LIN54	0	genome.wustl.edu	37	4	83906010	83906010	+	RNA	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	83906010	83906010	G	A	SNP	LIN54	ENST00000509748	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.008	-	-	-	no_errors	LIN54	HGNC	ENSG00000189308				135	0	0	98	20	16.9492
WDFY3	0	genome.wustl.edu	37	4	85781643	85781643	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	85781643	85781643	C	G	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.102	p.E34D	0.994	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				114	0	0	74	18	19.5652
PDHA2	0	genome.wustl.edu	37	4	96761335	96761335	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	96761335	96761335	C	T	SNP	PDHA2	ENST00000295266	human	ensembl	74_37	+1	known	nonsense	c.34	p.R12*	0.001	NULL	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA2	HGNC	ENSG00000163114				68	0	0	39	4	9.30233
CHSY3	0	genome.wustl.edu	37	5	129520970	129520970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	129520970	129520970	C	T	SNP	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	missense	c.2135	p.T712I	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108				189	0	0	65	13	16.6667
LEAP2	0	genome.wustl.edu	37	5	132210178	132210178	+	RNA	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	132210178	132210178	A	T	SNP	LEAP2	ENST00000485457	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.946	-	-	-	no_errors	LEAP2	HGNC	ENSG00000164406				46	0	0	14	8	36.3636
TGFBI	0	genome.wustl.edu	37	5	135383090	135383090	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	135383090	135383090	A	G	SNP	TGFBI	ENST00000305126	human	ensembl	74_37	+1	known	missense	c.752	p.D251G	1.000	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,superfamily_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708				432	0	0	199	13	6.13208
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				220	0	0	54	53	49.5327
DNAH5	0	genome.wustl.edu	37	5	13752383	13752383	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	13752383	13752383	G	C	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.10888	p.H3630D	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				117	1	0.847458	97	15	13.3929
EGR1	0	genome.wustl.edu	37	5	137802687	137802687	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	137802687	137802687	C	T	SNP	EGR1	ENST00000239938	human	ensembl	74_37	+1	known	silent	c.549	p.S183	0.093	pfam_DUF3446	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738				359	0	0	135	31	18.6747
DNAH5	0	genome.wustl.edu	37	5	13845022	13845022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	13845022	13845022	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.5195	p.A1732V	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				168	0	0	108	15	12.1951
DNAH5	0	genome.wustl.edu	37	5	13919307	13919307	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	13919307	13919307	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.953	p.A318V	0.943	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				227	0	0	97	6	5.82524
PCDHA12	0	genome.wustl.edu	37	5	140256667	140256667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140256667	140256667	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	missense	c.1610	p.A537V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				296	0	0	104	27	20.6107
PCDHAC1	0	genome.wustl.edu	37	5	140307999	140307999	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140307999	140307999	A	G	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	missense	c.1522	p.T508A	0.682	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				174	0	0	81	19	19
PCDHB1	0	genome.wustl.edu	37	5	140433387	140433387	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140433387	140433387	T	A	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.2332	p.F778I	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				180	0	0	67	47	41.2281
PCDHB2	0	genome.wustl.edu	37	5	140475706	140475706	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140475706	140475706	C	T	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	silent	c.1332	p.S444	0.993	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				438	1	0.22779	178	26	12.7451
PCDHB2	0	genome.wustl.edu	37	5	140475743	140475743	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140475743	140475743	T	C	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	missense	c.1369	p.S457P	0.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				402	1	0.248139	172	28	14
PCDHB6	0	genome.wustl.edu	37	5	140531705	140531705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140531705	140531705	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.1867	p.R623C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				111	0	0	55	12	17.9104
PCDHB8	0	genome.wustl.edu	37	5	140559252	140559252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140559252	140559252	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.1637	p.A546V	0.953	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				149	0	0	61	10	14.0845
PCDHB13	0	genome.wustl.edu	37	5	140594824	140594824	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140594824	140594824	G	T	SNP	PCDHB13	ENST00000341948	human	ensembl	74_37	+1	known	nonsense	c.1129	p.G377*	0.582	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372				263	0	0	151	17	10.119
PCDHB15	0	genome.wustl.edu	37	5	140625761	140625761	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140625761	140625761	G	T	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.615	p.Q205H	0.991	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				77	0	0	42	8	16
PCDHGB3	0	genome.wustl.edu	37	5	140751508	140751508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140751508	140751508	C	T	SNP	PCDHGB3	ENST00000576222	human	ensembl	74_37	+1	known	missense	c.1547	p.A516V	0.942	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209				134	0	0	57	7	10.9375
PCDHGA6	0	genome.wustl.edu	37	5	140754789	140754789	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140754789	140754789	G	C	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	missense	c.1139	p.G380A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				135	0	0	61	21	25.6098
PCDHGA8	0	genome.wustl.edu	37	5	140772926	140772926	+	Silent	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140772926	140772926	G	T	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	silent	c.546	p.V182	0.017	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767				127	0	0	58	8	12.1212
PCDHGB7	0	genome.wustl.edu	37	5	140798806	140798806	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140798806	140798806	C	T	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	silent	c.1380	p.H460	0.001	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122				167	0	0	50	14	21.875
DIAPH1	0	genome.wustl.edu	37	5	140906001	140906001	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140906001	140906001	A	G	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	missense	c.3304	p.Y1102H	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				135	0	0	44	14	24.1379
DIAPH1	0	genome.wustl.edu	37	5	140908386	140908386	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	140908386	140908386	T	G	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	missense	c.2904	p.L968F	0.907	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				114	0	0	47	14	22.9508
PCDH12	0	genome.wustl.edu	37	5	141329002	141329002	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	141329002	141329002	C	T	SNP	PCDH12	ENST00000231484	human	ensembl	74_37	-1	known	missense	c.3125	p.S1042N	0.199	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555				359	0	0	142	35	19.774
TRIO	0	genome.wustl.edu	37	5	14369554	14369554	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	14369554	14369554	G	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.3138	p.K1046N	0.997	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				85	0	0	62	9	12.6761
HTR4	0	genome.wustl.edu	37	5	147889351	147889351	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	147889351	147889351	A	G	SNP	HTR4	ENST00000360693	human	ensembl	74_37	-1	known	silent	c.744	p.T248	0.940	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT4_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HTR4	HGNC	ENSG00000164270				87	0	0	39	6	13.3333
SH3TC2	0	genome.wustl.edu	37	5	148406607	148406607	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	148406607	148406607	T	G	SNP	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	missense	c.2688	p.R896S	0.007	NULL	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247				240	0	0	120	29	19.4631
NDST1	0	genome.wustl.edu	37	5	149933039	149933039	+	RNA	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	149933039	149933039	G	T	SNP	NDST1	ENST00000521752	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	NDST1	HGNC	ENSG00000070614				51	0	0	30	5	14.2857
TENM2	0	genome.wustl.edu	37	5	167489185	167489185	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	167489185	167489185	A	G	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	missense	c.1430	p.Q477R	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				120	0	0	61	22	26.506
DOCK2	0	genome.wustl.edu	37	5	169461447	169461447	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	169461447	169461447	T	G	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.3512	p.V1171G	0.999	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				136	0	0	45	10	18.1818
DOCK2	0	genome.wustl.edu	37	5	169506041	169506041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	169506041	169506041	C	T	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.5057	p.P1686L	0.053	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				177	0	0	76	18	19.1489
NKX2-5	0	genome.wustl.edu	37	5	172660043	172660043	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	172660043	172660043	G	A	SNP	NKX2-5	ENST00000329198	human	ensembl	74_37	-1	known	silent	c.504	p.R168	0.997	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-5	HGNC	ENSG00000183072				25	0	0	7	3	30
OR2V1	0	genome.wustl.edu	37	5	180551633	180551633	+	Silent	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	180551633	180551633	C	G	SNP	OR2V1	ENST00000329365	human	ensembl	74_37	-1	known	silent	c.672	p.G224	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2V1	HGNC	ENSG00000185372				83	0	0	22	11	33.3333
PRDM9	0	genome.wustl.edu	37	5	23524462	23524462	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	23524462	23524462	G	A	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.970	p.D324N	0.659	pfscan_SET_dom	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				98	0	0	67	10	12.987
RAD1	0	genome.wustl.edu	37	5	34914837	34914837	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	34914837	34914837	T	C	SNP	RAD1	ENST00000341754	human	ensembl	74_37	-1	known	missense	c.161	p.E54G	1.000	pfam_Rad1_Rec1_Rad17,prints_Rad1_Rec1_Rad17,prints_Cell_cycle_checkpoint_Rad1	pfam_Rad1_Rec1_Rad17,prints_Rad1_Rec1_Rad17,prints_Cell_cycle_checkpoint_Rad1	-	no_errors	RAD1	HGNC	ENSG00000113456				147	0	0	83	17	17
SPEF2	0	genome.wustl.edu	37	5	35700701	35700701	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	35700701	35700701	A	G	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	missense	c.2245	p.T749A	0.000	pfam_Adenylate_kin,superfamily_P-loop_NTPase	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				105	0	0	45	5	10
IL6ST	0	genome.wustl.edu	37	5	55260015	55260015	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	55260015	55260015	T	G	SNP	IL6ST	ENST00000336909	human	ensembl	74_37	-1	known	missense	c.617	p.K206T	0.951	pfam_IL-6_rcpt_alpha-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352				142	0	0	66	5	7.04225
ANKRD55	0	genome.wustl.edu	37	5	55407146	55407146	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	55407146	55407146	G	A	SNP	ANKRD55	ENST00000341048	human	ensembl	74_37	-1	known	nonsense	c.1429	p.Q477*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD55	HGNC	ENSG00000164512				252	1	0.395257	132	24	15.3846
RNF180	0	genome.wustl.edu	37	5	63510031	63510031	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	63510031	63510031	A	G	SNP	RNF180	ENST00000389100	human	ensembl	74_37	+1	known	missense	c.878	p.Q293R	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF180	HGNC	ENSG00000164197				130	0	0	79	8	9.1954
SREK1	0	genome.wustl.edu	37	5	65466589	65466589	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	65466589	65466589	G	C	SNP	SREK1	ENST00000334121	human	ensembl	74_37	+1	known	missense	c.1298	p.R433T	0.668	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SREK1	HGNC	ENSG00000153914				33	0	0	13	2	13.3333
SRD5A1	0	genome.wustl.edu	37	5	6633932	6633932	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	6633932	6633932	C	G	SNP	SRD5A1	ENST00000274192	human	ensembl	74_37	+1	known	missense	c.243	p.S81R	0.005	pirsf_3-oxo-5-alpha-steroid_4-DH	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	SRD5A1	HGNC	ENSG00000145545				108	0	0	45	7	13.4615
PAPD7	0	genome.wustl.edu	37	5	6753132	6753132	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	6753132	6753132	C	T	SNP	PAPD7	ENST00000230859	human	ensembl	74_37	+1	known	silent	c.1416	p.S472	1.000	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD7	HGNC	ENSG00000112941				200	0	0	103	13	11.2069
IQGAP2	0	genome.wustl.edu	37	5	75886244	75886244	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	75886244	75886244	G	T	SNP	IQGAP2	ENST00000274364	human	ensembl	74_37	+1	known	missense	c.652	p.V218F	1.000	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703				173	0	0	62	8	11.4286
ENSG00000250320	0	genome.wustl.edu	37	5	83680326	83680326	+	RNA	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	83680326	83680326	C	T	SNP	ENSG00000250320	ENST00000509406	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	CTD-2269F5.1	Clone_based_vega_gene	ENSG00000250320				9	0	0	7	4	36.3636
TRIP13	0	genome.wustl.edu	37	5	914598	914598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	914598	914598	C	T	SNP	TRIP13	ENST00000166345	human	ensembl	74_37	+1	known	missense	c.1039	p.R347C	0.925	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_ClpA/B	-	no_errors	TRIP13	HGNC	ENSG00000071539				304	0	0	182	26	12.5
RHOBTB3	0	genome.wustl.edu	37	5	95119546	95119546	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	95119546	95119546	A	G	SNP	RHOBTB3	ENST00000379982	human	ensembl	74_37	+1	known	missense	c.1502	p.Y501C	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,superfamily_BTB/POZ_fold,superfamily_P-loop_NTPase,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	RHOBTB3	HGNC	ENSG00000164292				292	0	0	124	25	16.7785
SIM1	0	genome.wustl.edu	37	6	100838323	100838323	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	100838323	100838323	A	T	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.2215	p.F739I	1.000	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				272	0	0	77	14	15.3846
MICAL1	0	genome.wustl.edu	37	6	109770982	109770982	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	109770982	109770982	T	G	SNP	MICAL1	ENST00000368952	human	ensembl	74_37	-1	known	missense	c.1369	p.S457R	1.000	superfamily_CH-domain	pfam_DUF3585,pfam_CH-domain,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL1	HGNC	ENSG00000135596				153	0	0	43	10	18.8679
NEDD9	0	genome.wustl.edu	37	6	11190485	11190485	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	11190485	11190485	G	A	SNP	NEDD9	ENST00000379446	human	ensembl	74_37	-1	known	silent	c.1617	p.P539	0.001	pfam_Serine_rich	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859				230	0	0	109	22	16.7939
TBPL1	0	genome.wustl.edu	37	6	134305583	134305583	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	134305583	134305583	C	A	SNP	TBPL1	ENST00000237264	human	ensembl	74_37	+1	known	missense	c.352	p.P118T	1.000	pfam_TBP,prints_TBP	pfam_TBP,prints_TBP	-	no_errors	TBPL1	HGNC	ENSG00000028839				61	0	0	37	7	15.9091
PEX7	0	genome.wustl.edu	37	6	137187777	137187777	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	137187777	137187777	T	C	SNP	PEX7	ENST00000318471	human	ensembl	74_37	+1	known	missense	c.539	p.L180P	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PEX7	HGNC	ENSG00000112357				89	0	0	40	7	14.8936
SYNE1	0	genome.wustl.edu	37	6	152639292	152639292	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	152639292	152639292	T	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.16496	p.K5499M	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				149	0	0	97	15	13.3929
IPCEF1	0	genome.wustl.edu	37	6	154489165	154489165	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	154489165	154489165	G	A	SNP	IPCEF1	ENST00000367220	human	ensembl	74_37	-1	known	nonsense	c.994	p.R332*	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	IPCEF1	HGNC	ENSG00000074706				313	0	0	194	12	5.82524
JARID2	0	genome.wustl.edu	37	6	15501398	15501398	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	15501398	15501398	C	A	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.2206	p.P736T	1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				310	0	0	165	23	12.234
TFB1M	0	genome.wustl.edu	37	6	155632375	155632375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	155632375	155632375	C	T	SNP	TFB1M	ENST00000367166	human	ensembl	74_37	-1	known	missense	c.232	p.V78I	0.986	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N	-	no_errors	TFB1M	HGNC	ENSG00000029639				139	0	0	69	15	17.8571
TULP4	0	genome.wustl.edu	37	6	158922885	158922885	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	158922885	158922885	T	C	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	silent	c.2190	p.A730	0.001	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				289	0	0	147	24	14.0351
EZR	0	genome.wustl.edu	37	6	159204595	159204595	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	159204595	159204595	C	G	SNP	EZR	ENST00000337147	human	ensembl	74_37	-1	known	missense	c.655	p.G219R	1.000	pirsf_ERM,pfam_FERM_PH-like_C,prints_Ez/rad/moesin_like,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	EZR	HGNC	ENSG00000092820				122	0	0	82	7	7.86517
WTAP	0	genome.wustl.edu	37	6	160164762	160164762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	160164762	160164762	C	T	SNP	WTAP	ENST00000358372	human	ensembl	74_37	+1	known	missense	c.211	p.R71C	1.000	NULL	NULL	-	no_errors	WTAP	HGNC	ENSG00000146457				72	0	0	46	7	13.2075
MAP3K4	0	genome.wustl.edu	37	6	161494549	161494549	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	161494549	161494549	T	C	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	missense	c.2002	p.Y668H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				91	0	0	49	8	14.0351
MAP3K4	0	genome.wustl.edu	37	6	161510388	161510388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	161510388	161510388	C	T	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	missense	c.2858	p.A953V	0.154	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				243	1	0.409836	137	17	11.039
HIST1H2AH	0	genome.wustl.edu	37	6	27114929	27114929	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	27114929	27114929	G	T	SNP	HIST1H2AH	ENST00000377459	human	ensembl	74_37	+1	known	missense	c.22	p.G8C	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AH	HGNC	ENSG00000184825				173	0	0	54	18	25
DDR1	0	genome.wustl.edu	37	6	30865334	30865334	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	30865334	30865334	G	C	SNP	DDR1	ENST00000376575	human	ensembl	74_37	+1	known	missense	c.2194	p.A732P	0.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580				88	0	0	29	5	14.7059
DPCR1	0	genome.wustl.edu	37	6	30919972	30919972	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	30919972	30919972	C	A	SNP	DPCR1	ENST00000304311	human	ensembl	74_37	+1	known	missense	c.257	p.P86H	0.000	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631				176	0	0	81	16	16.4948
ABHD16A	0	genome.wustl.edu	37	6	31655315	31655315	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	31655315	31655315	T	G	SNP	ABHD16A	ENST00000395952	human	ensembl	74_37	-1	known	missense	c.1553	p.D518A	1.000	NULL	pfam_AB_hydrolase_1	-	no_errors	ABHD16A	HGNC	ENSG00000204427				308	0	0	113	24	17.5182
VARS	0	genome.wustl.edu	37	6	31750188	31750188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	31750188	31750188	C	T	SNP	VARS	ENST00000375663	human	ensembl	74_37	-1	known	missense	c.2024	p.R675Q	1.000	pfam_aa-tRNA-synth_Ia,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS	HGNC	ENSG00000204394				33	0	0	15	2	11.7647
TAP1	0	genome.wustl.edu	37	6	32821354	32821354	+	Silent	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	32821354	32821354	G	C	SNP	TAP1	ENST00000354258	human	ensembl	74_37	-1	known	silent	c.240	p.L80	0.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP1	HGNC	ENSG00000168394				95	0	0	22	9	29.0323
MTCH1	0	genome.wustl.edu	37	6	36938383	36938383	+	RNA	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	36938383	36938383	C	T	SNP	MTCH1	ENST00000492754	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTCH1	HGNC	ENSG00000137409				84	0	0	28	4	12.5
MDGA1	0	genome.wustl.edu	37	6	37619916	37619916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	37619916	37619916	C	T	SNP	MDGA1	ENST00000297153	human	ensembl	74_37	-1	known	missense	c.1183	p.A395T	0.996	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA1	HGNC	ENSG00000112139				92	0	0	56	11	16.4179
PGC	0	genome.wustl.edu	37	6	41705491	41705491	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	41705491	41705491	G	C	SNP	PGC	ENST00000373025	human	ensembl	74_37	-1	known	missense	c.991	p.P331A	0.811	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	PGC	HGNC	ENSG00000096088				96	0	0	44	4	8.33333
TRERF1	0	genome.wustl.edu	37	6	42227283	42227283	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	42227283	42227283	C	T	SNP	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	missense	c.2123	p.R708H	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496				101	0	0	29	16	35.5556
CUL7	0	genome.wustl.edu	37	6	43013029	43013029	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	43013029	43013029	G	A	SNP	CUL7	ENST00000535468	human	ensembl	74_37	-1	known	missense	c.3226	p.R1076W	0.986	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090				114	0	0	56	6	9.67742
ABCC10	0	genome.wustl.edu	37	6	43415496	43415496	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	43415496	43415496	G	A	SNP	ABCC10	ENST00000372530	human	ensembl	74_37	+1	known	silent	c.3780	p.P1260	0.035	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC10	HGNC	ENSG00000124574				334	0	0	237	36	13.1868
RUNX2	0	genome.wustl.edu	37	6	45296404	45296404	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	45296404	45296404	G	A	SNP	RUNX2	ENST00000352853	human	ensembl	74_37	+1	known	missense	c.145	p.A49T	1.000	NULL	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813				134	0	0	56	8	12.5
PKHD1	0	genome.wustl.edu	37	6	51907739	51907739	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	51907739	51907739	G	A	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	silent	c.3015	p.A1005	0.001	superfamily_Ig_E-set	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				148	0	0	96	19	16.5217
MCM3	0	genome.wustl.edu	37	6	52133966	52133966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	52133966	52133966	G	A	SNP	MCM3	ENST00000596288	human	ensembl	74_37	-1	known	missense	c.2021	p.A674V	1.000	pfam_MCM_DNA-dep_ATPase,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_Mcm3	-	no_errors	MCM3	HGNC	ENSG00000112118				152	1	0.653595	47	16	25.3968
EFHC1	0	genome.wustl.edu	37	6	52329713	52329713	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	52329713	52329713	C	T	SNP	EFHC1	ENST00000371068	human	ensembl	74_37	+1	known	silent	c.937	p.L313	1.000	smart_Uncharacterised_DM10	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_hand_dom	-	no_errors	EFHC1	HGNC	ENSG00000096093				98	0	0	48	6	11.1111
FAM83B	0	genome.wustl.edu	37	6	54805046	54805046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	54805046	54805046	C	T	SNP	FAM83B	ENST00000306858	human	ensembl	74_37	+1	known	missense	c.1277	p.A426V	0.002	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143				120	0	0	63	17	21.25
COL21A1	0	genome.wustl.edu	37	6	56006611	56006611	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	56006611	56006611	T	C	SNP	COL21A1	ENST00000244728	human	ensembl	74_37	-1	known	missense	c.1514	p.K505R	1.000	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL21A1	HGNC	ENSG00000124749				108	0	0	47	10	17.5439
DST	0	genome.wustl.edu	37	6	56468205	56468205	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	56468205	56468205	C	G	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.10856	p.G3619A	1.000	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				71	0	0	35	5	12.5
RREB1	0	genome.wustl.edu	37	6	7226887	7226887	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	7226887	7226887	C	G	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	missense	c.895	p.Q299E	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				128	0	0	109	8	6.83761
EEF1A1	0	genome.wustl.edu	37	6	74228300	74228300	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	74228300	74228300	G	C	SNP	EEF1A1	ENST00000309268	human	ensembl	74_37	-1	known	missense	c.806	p.T269S	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel,tigrfam_Transl_elong_EF1A_euk/arc	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508				103	0	0	66	17	20.4819
SNRNP48	0	genome.wustl.edu	37	6	7601644	7601644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	7601644	7601644	G	A	SNP	SNRNP48	ENST00000342415	human	ensembl	74_37	+1	known	missense	c.482	p.R161H	1.000	NULL	pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	SNRNP48	HGNC	ENSG00000168566				124	0	0	109	7	6.03448
MDN1	0	genome.wustl.edu	37	6	90422432	90422432	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	90422432	90422432	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.7292	p.G2431D	0.992	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				120	0	0	64	7	9.85915
ZAN	0	genome.wustl.edu	37	7	100395212	100395212	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	100395212	100395212	G	T	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	nonsense	c.8104	p.E2702*	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				73	0	0	39	4	9.30233
EPHB4	0	genome.wustl.edu	37	7	100417826	100417826	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	100417826	100417826	C	T	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	missense	c.901	p.V301I	0.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411				291	0	0	124	17	12.0567
TRIP6	0	genome.wustl.edu	37	7	100469250	100469250	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	100469250	100469250	G	C	SNP	TRIP6	ENST00000200457	human	ensembl	74_37	+1	known	missense	c.1085	p.C362S	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TRIP6	HGNC	ENSG00000087077				126	0	0	53	13	19.697
MUC17	0	genome.wustl.edu	37	7	100677233	100677233	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	100677233	100677233	T	C	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.2536	p.S846P	0.002	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				702	0	0	476	97	16.9284
CDHR3	0	genome.wustl.edu	37	7	105615467	105615467	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	105615467	105615467	A	G	SNP	CDHR3	ENST00000317716	human	ensembl	74_37	+1	known	missense	c.224	p.N75S	0.946	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR3	HGNC	ENSG00000128536				226	0	0	98	22	18.3333
PRKAR2B	0	genome.wustl.edu	37	7	106786831	106786831	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	106786831	106786831	C	T	SNP	PRKAR2B	ENST00000265717	human	ensembl	74_37	+1	known	silent	c.666	p.G222	0.026	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2B	HGNC	ENSG00000005249				94	0	0	43	11	20.3704
GPER1	0	genome.wustl.edu	37	7	1131429	1131429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	1131429	1131429	C	T	SNP	GPER1	ENST00000297469	human	ensembl	74_37	+1	known	missense	c.65	p.A22V	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPER1	HGNC	ENSG00000164850				138	0	0	68	7	9.33333
GRM8	0	genome.wustl.edu	37	7	126746611	126746611	+	Silent	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	126746611	126746611	A	C	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	silent	c.666	p.A222	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603				87	0	0	37	12	24.4898
UNCX	0	genome.wustl.edu	37	7	1273168	1273168	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	1273168	1273168	C	A	SNP	UNCX	ENST00000316333	human	ensembl	74_37	+1	known	missense	c.287	p.P96Q	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	UNCX	HGNC	ENSG00000164853				36	0	0	20	5	20
LRRC4	0	genome.wustl.edu	37	7	127668913	127668913	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	127668913	127668913	C	T	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.1781	p.G594E	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				59	0	0	32	4	11.1111
OPN1SW	0	genome.wustl.edu	37	7	128415195	128415195	+	Silent	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	128415195	128415195	T	G	SNP	OPN1SW	ENST00000249389	human	ensembl	74_37	-1	known	silent	c.366	p.G122	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_blue,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1SW	HGNC	ENSG00000128617				60	0	0	26	3	10.3448
ZC3HAV1	0	genome.wustl.edu	37	7	138732366	138732366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	138732366	138732366	C	T	SNP	ZC3HAV1	ENST00000242351	human	ensembl	74_37	-1	known	missense	c.2683	p.E895K	0.498	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939				170	0	0	78	19	19.5876
BRAF	0	genome.wustl.edu	37	7	140434413	140434413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	140434413	140434413	G	A	SNP	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	missense	c.2285	p.A762V	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				548	0	0	326	32	8.93855
GIMAP4	0	genome.wustl.edu	37	7	150269275	150269275	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	150269275	150269275	C	T	SNP	GIMAP4	ENST00000255945	human	ensembl	74_37	+1	known	silent	c.117	p.T39	0.966	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP4	HGNC	ENSG00000133574				105	1	0.943396	60	7	10.4478
GIMAP6	0	genome.wustl.edu	37	7	150325008	150325008	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	150325008	150325008	G	A	SNP	GIMAP6	ENST00000328902	human	ensembl	74_37	-1	known	silent	c.678	p.N226	0.000	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP6	HGNC	ENSG00000133561				292	0	0	173	35	16.8269
CDK5	0	genome.wustl.edu	37	7	150752874	150752874	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	150752874	150752874	C	A	SNP	CDK5	ENST00000485972	human	ensembl	74_37	-1	known	missense	c.374	p.R125M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CDK5	HGNC	ENSG00000164885				41	0	0	18	3	14.2857
SP8	0	genome.wustl.edu	37	7	20825340	20825340	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	20825340	20825340	C	T	SNP	SP8	ENST00000418710	human	ensembl	74_37	-1	known	silent	c.96	p.P32	0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Antifreeze_1	-	no_errors	SP8	HGNC	ENSG00000164651				104	0	0	47	5	9.61538
STK31	0	genome.wustl.edu	37	7	23749937	23749937	+	Silent	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	23749937	23749937	C	G	SNP	STK31	ENST00000355870	human	ensembl	74_37	+1	known	silent	c.33	p.S11	0.001	NULL	pfam_Tudor,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_dom	-	no_errors	STK31	HGNC	ENSG00000196335				121	0	0	33	10	23.2558
HOXA10	0	genome.wustl.edu	37	7	27213459	27213459	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	27213459	27213459	G	C	SNP	HOXA10	ENST00000283921	human	ensembl	74_37	-1	known	missense	c.467	p.S156W	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA10	HGNC	ENSG00000253293				37	0	0	16	3	15.7895
ELMO1	0	genome.wustl.edu	37	7	37264526	37264526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	37264526	37264526	G	A	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.659	p.A220V	1.000	pfam_DUF3361,superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				133	0	0	70	11	13.5802
AMPH	0	genome.wustl.edu	37	7	38424457	38424457	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	38424457	38424457	C	A	SNP	AMPH	ENST00000356264	human	ensembl	74_37	-1	known	missense	c.2050	p.G684C	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Amphiphysin_1,prints_SH3_domain	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053				198	1	0.502513	96	13	11.9266
SDK1	0	genome.wustl.edu	37	7	4088996	4088996	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	4088996	4088996	G	A	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	silent	c.2619	p.P873	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				89	0	0	34	5	12.8205
GLI3	0	genome.wustl.edu	37	7	42005852	42005852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	42005852	42005852	G	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.2819	p.P940L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				54	0	0	24	5	17.2414
URGCP	0	genome.wustl.edu	37	7	43918566	43918566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	43918566	43918566	C	T	SNP	URGCP	ENST00000453200	human	ensembl	74_37	-1	known	missense	c.496	p.A166T	0.028	NULL	superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608				108	0	0	59	12	16.9014
OGDH	0	genome.wustl.edu	37	7	44721400	44721400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	44721400	44721400	C	T	SNP	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	missense	c.1288	p.P430S	1.000	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953				150	0	0	79	16	16.8421
GRB10	0	genome.wustl.edu	37	7	50742167	50742167	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	50742167	50742167	G	A	SNP	GRB10	ENST00000398812	human	ensembl	74_37	-1	known	nonsense	c.328	p.Q110*	1.000	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB10	HGNC	ENSG00000106070				82	0	0	34	4	10.5263
COBL	0	genome.wustl.edu	37	7	51096633	51096633	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	51096633	51096633	G	A	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	silent	c.2406	p.Y802	0.211	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078				86	0	0	69	5	6.75676
POM121L12	0	genome.wustl.edu	37	7	53104122	53104122	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	53104122	53104122	C	A	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	missense	c.758	p.P253H	0.000	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900				126	0	0	52	12	18.75
TNRC18	0	genome.wustl.edu	37	7	5348924	5348924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	5348924	5348924	C	T	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	missense	c.8464	p.G2822R	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				57	0	0	22	3	12
PHKG1	0	genome.wustl.edu	37	7	56149350	56149350	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	56149350	56149350	C	T	SNP	PHKG1	ENST00000452681	human	ensembl	74_37	-1	known	silent	c.987	p.R329	0.172	superfamily_Kinase-like_dom,prints_Phosph_kin_gamma	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Phosph_kin_gamma	-	no_errors	PHKG1	HGNC	ENSG00000164776				94	0	0	35	5	12.5
ZNF479	0	genome.wustl.edu	37	7	57188753	57188753	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	57188753	57188753	T	C	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	silent	c.369	p.L123	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				134	1	0.740741	105	16	13.2231
TYW1	0	genome.wustl.edu	37	7	66563632	66563632	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	66563632	66563632	T	G	SNP	TYW1	ENST00000359626	human	ensembl	74_37	+1	known	missense	c.1489	p.F497V	0.993	pfam_rSAM	pfam_rSAM,pfam_Flavodoxin/NO_synth,pfam_tRNA_wybutosine-synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1	HGNC	ENSG00000198874				94	0	0	56	10	15.1515
WBSCR17	0	genome.wustl.edu	37	7	70886093	70886093	+	Splice_Site	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	70886093	70886093	T	C	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	splice_site	c.962+2	e5+2	0.995	-	-	-	no_errors	WBSCR17	HGNC	ENSG00000185274				51	0	0	44	4	8.33333
RSBN1L	0	genome.wustl.edu	37	7	77407902	77407902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	77407902	77407902	G	A	SNP	RSBN1L	ENST00000334955	human	ensembl	74_37	+1	known	missense	c.1958	p.R653H	1.000	NULL	NULL	-	no_errors	RSBN1L	HGNC	ENSG00000187257				163	0	0	101	21	17.2131
PCLO	0	genome.wustl.edu	37	7	82579563	82579563	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	82579563	82579563	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.10341	p.T3447	0.532	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				126	0	0	79	15	15.9574
PCLO	0	genome.wustl.edu	37	7	82585300	82585300	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	82585300	82585300	C	G	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.4969	p.V1657L	0.044	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				166	0	0	102	25	19.685
ZNF804B	0	genome.wustl.edu	37	7	88963842	88963842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	88963842	88963842	G	A	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.1546	p.V516I	0.999	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				109	0	0	57	17	22.973
FZD1	0	genome.wustl.edu	37	7	90896031	90896031	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	90896031	90896031	C	T	SNP	FZD1	ENST00000287934	human	ensembl	74_37	+1	known	silent	c.1836	p.I612	0.965	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD1	HGNC	ENSG00000157240				99	0	0	60	11	15.493
AKAP9	0	genome.wustl.edu	37	7	91622286	91622286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	91622286	91622286	G	A	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.529	p.A177T	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				95	0	0	39	8	17.0213
CALCR	0	genome.wustl.edu	37	7	93055791	93055791	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	93055791	93055791	C	A	SNP	CALCR	ENST00000359558	human	ensembl	74_37	-1	known	missense	c.1404	p.E468D	0.030	prints_GPCR_2_calcitonin_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCR	HGNC	ENSG00000004948				240	0	0	105	20	16
TRRAP	0	genome.wustl.edu	37	7	98609072	98609072	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	98609072	98609072	G	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	nonsense	c.11209	p.E3737*	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				151	0	0	70	17	19.5402
LOC101927550	0	genome.wustl.edu	37	7	98645597	98645597	+	RNA	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	98645597	98645597	T	A	SNP	LOC101927550	ENST00000468960	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC004893.11	Clone_based_vega_gene	ENSG00000242687				50	0	0	33	4	10.8108
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99023071	99023071	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	99023071	99023071	G	A	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	missense	c.1231	p.R411W	0.000	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919				163	0	0	73	10	12.0482
VPS13B	0	genome.wustl.edu	37	8	100520118	100520118	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	100520118	100520118	T	C	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	silent	c.4278	p.N1426	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				146	0	0	86	9	9.47368
VPS13B	0	genome.wustl.edu	37	8	100844880	100844880	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	100844880	100844880	G	T	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.9689	p.R3230M	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				81	0	0	38	5	11.6279
RGS22	0	genome.wustl.edu	37	8	101075945	101075945	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	101075945	101075945	C	A	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	missense	c.1051	p.V351L	0.054	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				74	0	0	51	12	19.0476
PKHD1L1	0	genome.wustl.edu	37	8	110456117	110456117	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	110456117	110456117	C	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.4777	p.P1593T	0.676	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				134	0	0	79	9	10.2273
PKHD1L1	0	genome.wustl.edu	37	8	110478991	110478991	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	110478991	110478991	C	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	silent	c.8598	p.D2866	1.000	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				33	0	0	24	3	11.1111
CSMD3	0	genome.wustl.edu	37	8	113304872	113304872	+	Silent	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	113304872	113304872	A	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.8682	p.N2894	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				131	0	0	94	13	12.1495
ADCY8	0	genome.wustl.edu	37	8	132051889	132051889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	132051889	132051889	C	T	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.691	p.V231M	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				52	0	0	52	9	14.7541
PHF20L1	0	genome.wustl.edu	37	8	133849991	133849991	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	133849991	133849991	G	T	SNP	PHF20L1	ENST00000220847	human	ensembl	74_37	+1	known	missense	c.287	p.C96F	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	-	no_errors	PHF20L1	HGNC	ENSG00000129292				86	0	0	47	10	17.5439
TG	0	genome.wustl.edu	37	8	133895150	133895150	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	133895150	133895150	G	A	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	silent	c.981	p.A327	0.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				63	0	0	52	5	8.77193
GPR20	0	genome.wustl.edu	37	8	142367096	142367096	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	142367096	142367096	C	A	SNP	GPR20	ENST00000377741	human	ensembl	74_37	-1	known	missense	c.928	p.G310C	0.479	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR20	HGNC	ENSG00000204882				94	0	0	50	6	10.7143
NAPRT1	0	genome.wustl.edu	37	8	144658646	144658646	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	144658646	144658646	C	T	SNP	NAPRT1	ENST00000276844	human	ensembl	74_37	-1	known	silent	c.978	p.Q326	1.000	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB	-	no_errors	NAPRT1	HGNC	ENSG00000147813				40	0	0	24	2	7.69231
CYHR1	0	genome.wustl.edu	37	8	145689685	145689685	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	145689685	145689685	G	T	SNP	CYHR1	ENST00000306145	human	ensembl	74_37	-1	known	missense	c.404	p.A135D	0.409	NULL	NULL	-	no_errors	CYHR1	HGNC	ENSG00000187954				332	0	0	132	22	14.2857
MICU3	0	genome.wustl.edu	37	8	16962959	16962959	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	16962959	16962959	G	C	SNP	MICU3	ENST00000318063	human	ensembl	74_37	+1	known	missense	c.1123	p.E375Q	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU3	HGNC	ENSG00000155970				21	0	0	23	3	11.5385
CSGALNACT1	0	genome.wustl.edu	37	8	19362795	19362795	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	19362795	19362795	A	C	SNP	CSGALNACT1	ENST00000311540	human	ensembl	74_37	-1	known	missense	c.551	p.I184S	0.102	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				127	0	0	41	9	18
LPL	0	genome.wustl.edu	37	8	19809439	19809439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	19809439	19809439	C	T	SNP	LPL	ENST00000311322	human	ensembl	74_37	+1	known	missense	c.409	p.R137W	0.185	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,prints_Lipase,tigrfam_Lipo_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipo_Lipase,prints_Lipase,pfscan_PLAT/LH2_dom,tigrfam_Lipo_Lipase	-	no_errors	LPL	HGNC	ENSG00000175445				126	0	0	51	12	19.0476
NEFM	0	genome.wustl.edu	37	8	24774700	24774700	+	Silent	SNP	C	C	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	24774700	24774700	C	G	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	silent	c.1332	p.P444	1.000	NULL	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				133	0	0	53	9	14.5161
ADAM2	0	genome.wustl.edu	37	8	39613289	39613289	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	39613289	39613289	T	A	SNP	ADAM2	ENST00000265708	human	ensembl	74_37	-1	known	missense	c.1755	p.Q585H	0.000	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM2	HGNC	ENSG00000104755				58	0	0	36	10	21.7391
PRKDC	0	genome.wustl.edu	37	8	48701571	48701571	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	48701571	48701571	G	T	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.10795	p.P3599T	0.001	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				113	0	0	36	7	16.2791
CHD7	0	genome.wustl.edu	37	8	61654080	61654080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	61654080	61654080	C	T	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.89	p.P30L	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				42	0	0	20	4	16.6667
CYP7B1	0	genome.wustl.edu	37	8	65528708	65528708	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	65528708	65528708	T	G	SNP	CYP7B1	ENST00000310193	human	ensembl	74_37	-1	known	missense	c.390	p.K130N	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817				63	0	0	47	15	24.1935
TRIM55	0	genome.wustl.edu	37	8	67066483	67066483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	67066483	67066483	C	T	SNP	TRIM55	ENST00000315962	human	ensembl	74_37	+1	known	missense	c.1438	p.R480W	0.999	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573				105	0	0	46	10	17.8571
C8orf34	0	genome.wustl.edu	37	8	69728125	69728125	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	69728125	69728125	C	T	SNP	C8orf34	ENST00000518698	human	ensembl	74_37	+1	known	silent	c.1554	p.S518	1.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084				164	0	0	48	26	35.1351
HNF4G	0	genome.wustl.edu	37	8	76452273	76452273	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	76452273	76452273	A	G	SNP	HNF4G	ENST00000396423	human	ensembl	74_37	+1	known	missense	c.46	p.T16A	0.999	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4G	HGNC	ENSG00000164749				225	0	0	116	15	11.4504
ZFHX4	0	genome.wustl.edu	37	8	77765876	77765876	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	77765876	77765876	T	G	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.6719	p.V2240G	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				73	0	0	34	21	38.1818
CA13	0	genome.wustl.edu	37	8	86163053	86163053	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	86163053	86163053	A	G	SNP	CA13	ENST00000321764	human	ensembl	74_37	+1	known	missense	c.122	p.Y41C	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA13	HGNC	ENSG00000185015				234	0	0	124	27	17.8808
TMEM67	0	genome.wustl.edu	37	8	94805495	94805495	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	94805495	94805495	C	T	SNP	TMEM67	ENST00000453321	human	ensembl	74_37	+1	known	missense	c.1645	p.R549C	1.000	pfam_Meckelin	pfam_Meckelin,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	TMEM67	HGNC	ENSG00000164953				132	0	0	42	12	22.2222
CPQ	0	genome.wustl.edu	37	8	98155373	98155373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	98155373	98155373	G	A	SNP	CPQ	ENST00000220763	human	ensembl	74_37	+1	known	missense	c.1381	p.V461I	0.985	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	CPQ	HGNC	ENSG00000104324				102	0	0	68	7	9.33333
C8orf47	0	genome.wustl.edu	37	8	99101668	99101668	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	99101668	99101668	G	C	SNP	C8orf47	ENST00000318528	human	ensembl	74_37	+1	known	missense	c.423	p.E141D	0.001	NULL	NULL	-	no_errors	C8orf47	HGNC	ENSG00000177459				104	0	0	42	14	25
NR4A3	0	genome.wustl.edu	37	9	102590532	102590532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	102590532	102590532	G	A	SNP	NR4A3	ENST00000330847	human	ensembl	74_37	+1	known	missense	c.241	p.E81K	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508				162	0	0	58	17	22.6667
FAM206A	0	genome.wustl.edu	37	9	111701922	111701922	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	111701922	111701922	G	T	SNP	FAM206A	ENST00000322940	human	ensembl	74_37	+1	known	nonsense	c.502	p.E168*	1.000	pfam_GCV_H,superfamily_Single_hybrid_motif	pfam_GCV_H,superfamily_Single_hybrid_motif	-	no_errors	FAM206A	HGNC	ENSG00000119328				100	0	0	33	5	13.1579
EPB41L4B	0	genome.wustl.edu	37	9	111956584	111956584	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	111956584	111956584	G	A	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	silent	c.2139	p.S713	0.000	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				212	1	0.469484	55	20	26.6667
SVEP1	0	genome.wustl.edu	37	9	113221306	113221306	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	113221306	113221306	T	G	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.3410	p.K1137T	1.000	pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Growth_fac_rcpt_N_dom	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				185	0	0	85	17	16.6667
TRUB2	0	genome.wustl.edu	37	9	131071975	131071975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	131071975	131071975	G	A	SNP	TRUB2	ENST00000372890	human	ensembl	74_37	-1	known	missense	c.850	p.R284W	0.012	superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom	-	no_errors	TRUB2	HGNC	ENSG00000167112				70	0	0	37	5	11.9048
SLC27A4	0	genome.wustl.edu	37	9	131117771	131117771	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	131117771	131117771	C	T	SNP	SLC27A4	ENST00000300456	human	ensembl	74_37	+1	known	silent	c.1557	p.T519	0.086	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A4	HGNC	ENSG00000167114				79	0	0	42	5	10.6383
SH3GLB2	0	genome.wustl.edu	37	9	131783492	131783492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	131783492	131783492	C	T	SNP	SH3GLB2	ENST00000372554	human	ensembl	74_37	-1	known	missense	c.212	p.R71Q	0.997	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB2	HGNC	ENSG00000148341				28	0	0	13	2	13.3333
FUBP3	0	genome.wustl.edu	37	9	133506105	133506105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	133506105	133506105	G	A	SNP	FUBP3	ENST00000319725	human	ensembl	74_37	+1	known	missense	c.1208	p.R403Q	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164				77	0	0	35	8	18.6047
GTF3C5	0	genome.wustl.edu	37	9	135929863	135929863	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	135929863	135929863	G	A	SNP	GTF3C5	ENST00000372108	human	ensembl	74_37	+1	known	missense	c.1057	p.V353I	0.202	NULL	pfam_TF_IIIC_su-5	-	no_errors	GTF3C5	HGNC	ENSG00000148308				80	0	0	28	7	20
ADAMTSL2	0	genome.wustl.edu	37	9	136402618	136402618	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	136402618	136402618	G	A	SNP	ADAMTSL2	ENST00000393061	human	ensembl	74_37	+1	known	missense	c.509	p.R170H	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859				127	1	0.78125	40	4	9.09091
SARDH	0	genome.wustl.edu	37	9	136573487	136573487	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	136573487	136573487	G	A	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	silent	c.1392	p.Y464	0.921	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				219	0	0	93	7	7
GLT6D1	0	genome.wustl.edu	37	9	138516492	138516492	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	138516492	138516492	C	T	SNP	GLT6D1	ENST00000371763	human	ensembl	74_37	-1	known	silent	c.282	p.P94	0.000	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GLT6D1	HGNC	ENSG00000204007				137	0	0	65	14	17.7215
PHPT1	0	genome.wustl.edu	37	9	139743963	139743963	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	139743963	139743963	C	T	SNP	PHPT1	ENST00000247665	human	ensembl	74_37	+1	known	silent	c.81	p.V27	0.877	pfam_Ocnus	pfam_Ocnus	-	no_errors	PHPT1	HGNC	ENSG00000054148				173	0	0	46	18	28.125
LCN12	0	genome.wustl.edu	37	9	139847315	139847315	+	RNA	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	139847315	139847315	G	A	SNP	LCN12	ENST00000495410	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LCN12	HGNC	ENSG00000184925				153	0	0	63	19	23.1707
C9orf142	0	genome.wustl.edu	37	9	139888360	139888360	+	RNA	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	139888360	139888360	G	A	SNP	C9orf142	ENST00000463765	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf142	HGNC	ENSG00000148362				14	0	0	7	2	22.2222
CACNA1B	0	genome.wustl.edu	37	9	141016353	141016353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	141016353	141016353	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.6925	p.R2309C	0.982	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				119	1	0.833333	44	4	8.33333
SLC24A2	0	genome.wustl.edu	37	9	19785935	19785935	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	19785935	19785935	C	A	SNP	SLC24A2	ENST00000341998	human	ensembl	74_37	-1	known	missense	c.930	p.K310N	1.000	tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A2	HGNC	ENSG00000155886				131	0	0	50	10	16.6667
FOCAD	0	genome.wustl.edu	37	9	20944775	20944775	+	Splice_Site	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	20944775	20944775	T	C	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	splice_site	c.3555+2	e28+2	1.000	-	-	-	no_errors	FOCAD	HGNC	ENSG00000188352				46	0	0	20	3	13.0435
IFNA7	0	genome.wustl.edu	37	9	21201782	21201782	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	21201782	21201782	C	A	SNP	IFNA7	ENST00000239347	human	ensembl	74_37	-1	known	missense	c.383	p.G128V	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA7	HGNC	ENSG00000214042				362	0	0	185	18	8.867
UNC13B	0	genome.wustl.edu	37	9	35382496	35382496	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	35382496	35382496	A	G	SNP	UNC13B	ENST00000378496	human	ensembl	74_37	+1	known	missense	c.2551	p.N851D	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722				225	0	0	123	24	16.3265
CD72	0	genome.wustl.edu	37	9	35616552	35616552	+	RNA	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	35616552	35616552	G	A	SNP	CD72	ENST00000490239	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD72	HGNC	ENSG00000137101				42	0	0	25	7	21.875
SLC1A1	0	genome.wustl.edu	37	9	4576621	4576621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	4576621	4576621	G	A	SNP	SLC1A1	ENST00000262352	human	ensembl	74_37	+1	known	missense	c.1051	p.D351N	1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A1	HGNC	ENSG00000106688				182	0	0	85	11	11.4583
ERMP1	0	genome.wustl.edu	37	9	5787567	5787567	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	5787567	5787567	G	A	SNP	ERMP1	ENST00000339450	human	ensembl	74_37	-1	known	nonsense	c.2413	p.R805*	0.990	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219				162	0	0	76	13	14.6067
TRPM6	0	genome.wustl.edu	37	9	77403574	77403574	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	77403574	77403574	C	A	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.2623	p.V875F	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				190	1	0.52356	59	17	22.3684
PCSK5	0	genome.wustl.edu	37	9	78686713	78686713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	78686713	78686713	G	A	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	missense	c.793	p.V265M	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				317	0	0	118	20	14.4928
PRUNE2	0	genome.wustl.edu	37	9	79322985	79322985	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	79322985	79322985	T	C	SNP	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	missense	c.3128	p.E1043G	0.014	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				68	0	0	40	12	23.0769
AGTPBP1	0	genome.wustl.edu	37	9	88200433	88200433	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	88200433	88200433	C	T	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	nonsense	c.3146	p.W1049*	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049				211	0	0	109	23	17.4242
DAPK1	0	genome.wustl.edu	37	9	90321379	90321379	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	90321379	90321379	C	T	SNP	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	silent	c.3468	p.I1156	0.043	NULL	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				69	0	0	24	3	11.1111
MORF4L2	0	genome.wustl.edu	37	X	102931372	102931372	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	102931372	102931372	C	A	SNP	MORF4L2	ENST00000360458	human	ensembl	74_37	-1	known	missense	c.584	p.G195V	1.000	pfam_MRG_dom	pfam_MRG_dom,superfamily_Chromodomain-like	-	no_errors	MORF4L2	HGNC	ENSG00000123562				80	0	0	35	12	25.5319
LRCH2	0	genome.wustl.edu	37	X	114357666	114357666	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	114357666	114357666	C	A	SNP	LRCH2	ENST00000317135	human	ensembl	74_37	-1	known	nonsense	c.1939	p.E647*	1.000	superfamily_CH-domain,pfscan_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224				28	0	0	8	6	42.8571
MAP7D3	0	genome.wustl.edu	37	X	135313820	135313820	+	Silent	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	135313820	135313820	C	A	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	silent	c.1242	p.G414	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				92	0	0	40	30	42.8571
GPM6B	0	genome.wustl.edu	37	X	13795513	13795513	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	13795513	13795513	T	G	SNP	GPM6B	ENST00000316715	human	ensembl	74_37	-1	known	missense	c.729	p.K243N	0.998	pfam_Myelin_PLP,smart_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6B	HGNC	ENSG00000046653				50	0	0	15	6	28.5714
MAGEC1	0	genome.wustl.edu	37	X	140994648	140994648	+	Silent	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	140994648	140994648	C	A	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	silent	c.1458	p.S486	0.119	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				252	0	0	99	52	34.4371
IDS	0	genome.wustl.edu	37	X	148577905	148577905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	148577905	148577905	G	A	SNP	IDS	ENST00000340855	human	ensembl	74_37	-1	known	missense	c.851	p.P284L	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404				104	0	0	21	20	48.7805
CD99L2	0	genome.wustl.edu	37	X	149938842	149938842	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	149938842	149938842	T	A	SNP	CD99L2	ENST00000370377	human	ensembl	74_37	-1	known	missense	c.656	p.Q219L	1.000	pfam_CD99L2	pfam_CD99L2	-	no_errors	CD99L2	HGNC	ENSG00000102181				34	0	0	25	3	10.7143
PASD1	0	genome.wustl.edu	37	X	150817162	150817162	+	Silent	SNP	T	T	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	150817162	150817162	T	A	SNP	PASD1	ENST00000370357	human	ensembl	74_37	+1	known	silent	c.705	p.A235	0.044	NULL	superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049				100	0	0	36	24	40
CNGA2	0	genome.wustl.edu	37	X	150912810	150912810	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	150912810	150912810	A	G	SNP	CNGA2	ENST00000329903	human	ensembl	74_37	+1	known	missense	c.1835	p.Y612C	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862				167	0	0	68	8	10.5263
HCFC1	0	genome.wustl.edu	37	X	153228859	153228859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	153228859	153228859	C	T	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	missense	c.529	p.E177K	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				44	0	0	13	12	48
FLNA	0	genome.wustl.edu	37	X	153588107	153588107	+	Silent	SNP	G	G	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	153588107	153588107	G	A	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	silent	c.3972	p.Y1324	0.821	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				65	0	0	20	10	33.3333
ENSG00000270726	0	genome.wustl.edu	37	X	155254981	155254981	+	RNA	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	155254981	155254981	C	A	SNP	ENSG00000270726	ENST00000285718	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	AJ271736.10	Clone_based_vega_gene	ENSG00000270726				48	0	0	23	3	11.5385
CDKL5	0	genome.wustl.edu	37	X	18598025	18598025	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	18598025	18598025	A	G	SNP	CDKL5	ENST00000379989	human	ensembl	74_37	+1	known	missense	c.340	p.S114G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086				69	0	0	31	10	24.3902
WAS	0	genome.wustl.edu	37	X	48545268	48545268	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	48545268	48545268	C	A	SNP	WAS	ENST00000376701	human	ensembl	74_37	+1	known	missense	c.658	p.P220T	0.058	NULL	pfam_WH1/EVH1,pfam_CRIB_dom,pfam_WH2_dom,superfamily_WASP_C,smart_WH1/EVH1,smart_CRIB_dom,smart_WH2_dom,pfscan_CRIB_dom,pfscan_WH1/EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285				42	0	0	16	5	23.8095
SHROOM4	0	genome.wustl.edu	37	X	50378091	50378091	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	50378091	50378091	G	T	SNP	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	missense	c.982	p.L328I	0.912	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352				46	0	0	10	3	23.0769
GSPT2	0	genome.wustl.edu	37	X	51487718	51487718	+	Silent	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	51487718	51487718	T	C	SNP	GSPT2	ENST00000340438	human	ensembl	74_37	+1	known	silent	c.996	p.H332	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom	-	no_errors	GSPT2	HGNC	ENSG00000189369				169	0	0	44	12	21.4286
MAGED1	0	genome.wustl.edu	37	X	51640096	51640096	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	51640096	51640096	C	T	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	missense	c.1513	p.R505C	0.224	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222				45	0	0	13	2	13.3333
TSPYL2	0	genome.wustl.edu	37	X	53113997	53113997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	53113997	53113997	C	T	SNP	TSPYL2	ENST00000375442	human	ensembl	74_37	+1	known	missense	c.946	p.P316S	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL2	HGNC	ENSG00000184205				68	0	0	32	4	11.1111
XIST	0	genome.wustl.edu	37	X	73069973	73069973	+	RNA	SNP	T	T	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	73069973	73069973	T	G	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				51	0	0	18	12	40
MAGEE2	0	genome.wustl.edu	37	X	75004886	75004886	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	75004886	75004886	T	C	SNP	MAGEE2	ENST00000373359	human	ensembl	74_37	-1	known	missense	c.1	p.M1V	1.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675				48	0	0	7	5	41.6667
USP9Y	0	genome.wustl.edu	37	Y	14848463	14848463	+	Silent	SNP	C	C	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	Y	14848463	14848463	C	T	SNP	USP9Y	ENST00000338981	human	ensembl	74_37	+1	known	silent	c.1144	p.L382	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,superfamily_Glycoside_hydrolase_SF,pfscan_Peptidase_C19/C67	-	no_errors	USP9Y	HGNC	ENSG00000114374				45	0	0	10	7	41.1765
GDAP2	0	genome.wustl.edu	37	1	118413059	118413059	+	RNA	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	118413059	118413059	A	-	DEL	GDAP2	ENST00000491626	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GDAP2	HGNC	ENSG00000196505				30	0	0	14	5	26.3158
ADAM30	0	genome.wustl.edu	37	1	120438116	120438116	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	120438116	120438116	T	-	DEL	ADAM30	ENST00000369400	human	ensembl	74_37	-1	known	frame_shift_del	c.844	p.S282fs	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249				100	0	0	49	9	15.5172
CD84	0	genome.wustl.edu	37	1	160520869	160520869	+	RNA	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	160520869	160520869	T	-	DEL	CD84	ENST00000466767	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD84	HGNC	ENSG00000066294				95	0	0	75	16	17.5824
PPOX	0	genome.wustl.edu	37	1	161137804	161137804	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	161137804	161137804	C	-	DEL	PPOX	ENST00000352210	human	ensembl	74_37	+1	known	frame_shift_del	c.358	p.F122fs	1.000	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	-	no_errors	PPOX	HGNC	ENSG00000143224				196	0	0	122	15	10.9489
SCYL3	0	genome.wustl.edu	37	1	169823472	169823472	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	169823472	169823472	T	-	DEL	SCYL3	ENST00000367770	human	ensembl	74_37	-1	known	frame_shift_del	c.2108	p.K703fs	0.001	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457				150	0	0	81	17	17.3469
PRG4	0	genome.wustl.edu	37	1	186277935	186277936	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	186277935	186277936	-	A	INS	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	frame_shift_ins	c.3084_3085	p.P1030fs	0.399:0.367	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				251	0	0	67	13	16.25
TROVE2	0	genome.wustl.edu	37	1	193045113	193045115	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	193045113	193045115	AGA	-	DEL	TROVE2	ENST00000367441	human	ensembl	74_37	+1	known	in_frame_del	c.744_746	p.E250in_frame_del	1.000:1.000:1.000	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfscan_TROVE	-	no_errors	TROVE2	HGNC	ENSG00000116747				140	0	0	44	9	16.9811
PPP1R12B	0	genome.wustl.edu	37	1	202407190	202407190	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	202407190	202407190	T	-	DEL	PPP1R12B	ENST00000480184	human	ensembl	74_37	+1	novel	frame_shift_del	c.1496	p.F502fs	0.041	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				72	0	0	34	8	19.0476
PLEKHA6	0	genome.wustl.edu	37	1	204226851	204226851	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	204226851	204226851	G	-	DEL	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	frame_shift_del	c.1154	p.P385fs	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				24	0	0	10	5	33.3333
CENPF	0	genome.wustl.edu	37	1	214791998	214791999	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	214791998	214791999	-	T	INS	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	frame_shift_ins	c.442_443	p.T150fs	0.099:0.018	pfam_Centromere_CenpF_N	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				119	0	0	62	9	12.6761
ZNF124	0	genome.wustl.edu	37	1	247319909	247319909	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	247319909	247319909	T	-	DEL	ZNF124	ENST00000543802	human	ensembl	74_37	-1	known	frame_shift_del	c.1015	p.T339fs	0.935	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF124	HGNC	ENSG00000196418				92	0	0	74	8	9.7561
AHDC1	0	genome.wustl.edu	37	1	27876869	27876869	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	27876869	27876869	T	-	DEL	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	frame_shift_del	c.1758	p.K586fs	0.415	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705				178	0	0	53	14	20.8955
CLSPN	0	genome.wustl.edu	37	1	36226252	36226252	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	36226252	36226252	C	-	DEL	CLSPN	ENST00000318121	human	ensembl	74_37	-1	known	frame_shift_del	c.1270	p.D424fs	0.001	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853				267	0	0	132	10	7.04225
PPCS	0	genome.wustl.edu	37	1	42925658	42925658	+	RNA	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	42925658	42925658	A	-	DEL	PPCS	ENST00000469615	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	PPCS	HGNC	ENSG00000127125				24	0	0	20	7	25.9259
FAAH	0	genome.wustl.edu	37	1	46871370	46871370	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	46871370	46871370	C	-	DEL	FAAH	ENST00000243167	human	ensembl	74_37	+1	known	frame_shift_del	c.689	p.L232fs	1.000	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480				214	1	0.465116	81	23	22.1154
JAK1	0	genome.wustl.edu	37	1	65306997	65306997	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	65306997	65306997	T	-	DEL	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	frame_shift_del	c.2580	p.K860fs	0.055	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				180	0	0	87	13	13
JAK1	0	genome.wustl.edu	37	1	65330630	65330630	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	65330630	65330630	T	-	DEL	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	frame_shift_del	c.1016	p.N339fs	0.934	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				73	0	0	29	6	17.1429
LRRC8C	0	genome.wustl.edu	37	1	90180340	90180340	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	1	90180340	90180340	A	-	DEL	LRRC8C	ENST00000370454	human	ensembl	74_37	+1	known	frame_shift_del	c.2211	p.N739fs	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488				100	0	0	54	8	12.9032
TACC2	0	genome.wustl.edu	37	10	123970379	123970380	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	123970379	123970380	-	C	INS	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	frame_shift_ins	c.6439_6440	p.V2150fs	0.905:0.908	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				473	0	0	153	29	15.9341
INPP5A	0	genome.wustl.edu	37	10	134503931	134503931	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	134503931	134503931	A	-	DEL	INPP5A	ENST00000368594	human	ensembl	74_37	+1	known	frame_shift_del	c.342	p.N116fs	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5A	HGNC	ENSG00000068383				189	0	0	98	14	12.5
MASTL	0	genome.wustl.edu	37	10	27459272	27459272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	27459272	27459272	A	-	DEL	MASTL	ENST00000375940	human	ensembl	74_37	+1	known	frame_shift_del	c.1384	p.T464fs	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MASTL	HGNC	ENSG00000120539				94	0	0	49	9	15.5172
MPP7	0	genome.wustl.edu	37	10	28348538	28348538	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	28348538	28348538	A	-	DEL	MPP7	ENST00000496637	human	ensembl	74_37	-1	known	frame_shift_del	c.1339	p.Y447fs	0.021	NULL	pfam_L27_C,pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,superfamily_P-loop_NTPase,smart_L27,smart_PDZ,smart_SH3_domain,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_SH3_domain	-	no_errors	MPP7	HGNC	ENSG00000150054				50	0	0	31	4	11.4286
SFMBT2	0	genome.wustl.edu	37	10	7214605	7214605	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	7214605	7214605	C	-	DEL	SFMBT2	ENST00000361972	human	ensembl	74_37	-1	known	frame_shift_del	c.2003	p.R668fs	1.000	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879				113	0	0	28	9	24.3243
KCNMA1	0	genome.wustl.edu	37	10	78771741	78771741	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	10	78771741	78771741	T	-	DEL	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	frame_shift_del	c.2088	p.K696fs	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				207	1	0.480769	72	11	13.253
CTSD	0	genome.wustl.edu	37	11	1780829	1780830	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	1780829	1780830	-	G	INS	CTSD	ENST00000236671	human	ensembl	74_37	-1	known	frame_shift_ins	c.269_268	p.Q90fs	1.000:0.999	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	CTSD	HGNC	ENSG00000117984				101	0	0	47	6	11.3208
TRIM51HP	0	genome.wustl.edu	37	11	55065032	55065032	+	RNA	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	55065032	55065032	T	-	DEL	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007				92	0	0	50	9	15.2542
UBQLN3	0	genome.wustl.edu	37	11	5529644	5529644	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	5529644	5529644	G	-	DEL	UBQLN3	ENST00000311659	human	ensembl	74_37	-1	known	frame_shift_del	c.1145	p.P382fs	0.499	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520				313	1	0.318471	110	16	12.6984
PPP2R5B	0	genome.wustl.edu	37	11	64699297	64699297	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	64699297	64699297	T	-	DEL	PPP2R5B	ENST00000164133	human	ensembl	74_37	+1	known	frame_shift_del	c.1073	p.F359fs	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5B	HGNC	ENSG00000068971				166	0	0	52	13	20
SPDYC	0	genome.wustl.edu	37	11	64940287	64940288	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	11	64940287	64940288	-	C	INS	SPDYC	ENST00000377185	human	ensembl	74_37	+1	known	frame_shift_ins	c.649_650	p.C219fs	0.960:0.967	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYC	HGNC	ENSG00000204710				146	0	0	54	12	18.1818
UTP20	0	genome.wustl.edu	37	12	101680156	101680157	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	101680156	101680157	-	T	INS	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	frame_shift_ins	c.384_385	p.L130fs	0.834:1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				438	0	0	189	26	12.093
APPL2	0	genome.wustl.edu	37	12	105597552	105597552	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	105597552	105597552	A	-	DEL	APPL2	ENST00000551662	human	ensembl	74_37	-1	known	frame_shift_del	c.651	p.F217fs	0.999	NULL	pfam_PTB/PI_dom,pfam_Pleckstrin_homology,pfam_PTB,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom	-	no_errors	APPL2	HGNC	ENSG00000136044				278	0	0	89	17	16.0377
TAS2R8	0	genome.wustl.edu	37	12	10959538	10959544	+	Frame_Shift_Del	DEL	AGTTATT	AGTTATT	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	AGTTATT	AGTTATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	10959538	10959544	AGTTATT	-	DEL	TAS2R8	ENST00000240615	human	ensembl	74_37	-1	known	frame_shift_del	c.42_36	p.I13fs	0.010:0.009:0.010:0.003:0.002:0.001:0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAS2R8	HGNC	ENSG00000121314				172	0	0	80	8	9.09091
OAS2	0	genome.wustl.edu	37	12	113436174	113436174	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	113436174	113436174	A	-	DEL	OAS2	ENST00000342315	human	ensembl	74_37	+1	known	frame_shift_del	c.967	p.N323fs	0.000	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335				247	0	0	91	14	13.3333
KNTC1	0	genome.wustl.edu	37	12	123087620	123087620	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	123087620	123087620	A	-	DEL	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	frame_shift_del	c.4931	p.K1646fs	1.000	pfam_RZZ-complex_KNTC1/ROD_C	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				66	0	0	21	4	16
PCED1B	0	genome.wustl.edu	37	12	47628998	47628998	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	47628998	47628998	G	-	DEL	PCED1B	ENST00000432328	human	ensembl	74_37	+1	known	frame_shift_del	c.152	p.E53fs	1.000	NULL	NULL	-	no_errors	PCED1B	HGNC	ENSG00000179715				85	0	0	46	8	14.8148
ENSG00000257913	0	genome.wustl.edu	37	12	49412460	49412461	+	RNA	INS	-	-	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	49412460	49412461	-	G	INS	ENSG00000257913	ENST00000547395	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.113:0.377	-	-	-	no_errors	RP11-386G11.5	Clone_based_vega_gene	ENSG00000257913				192	0	0	75	12	13.7931
VWF	0	genome.wustl.edu	37	12	6153589	6153589	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	6153589	6153589	G	-	DEL	VWF	ENST00000261405	human	ensembl	74_37	-1	known	frame_shift_del	c.2310	p.M771fs	1.000	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				61	0	0	39	6	13.3333
TMBIM4	0	genome.wustl.edu	37	12	66531937	66531937	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	66531937	66531937	A	-	DEL	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	frame_shift_del	c.520	p.Y174fs	0.028	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				81	0	0	60	10	14.2857
TMTC3	0	genome.wustl.edu	37	12	88553917	88553917	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	12	88553917	88553917	T	-	DEL	TMTC3	ENST00000266712	human	ensembl	74_37	+1	known	frame_shift_del	c.535	p.L180fs	0.739	NULL	pfam_TPR_2,pfam_TPR_1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324				325	0	0	104	25	19.3798
FNDC3A	0	genome.wustl.edu	37	13	49710541	49710542	+	In_Frame_Ins	INS	-	-	AAATTG			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	49710541	49710542	-	AAATTG	INS	FNDC3A	ENST00000492622	human	ensembl	74_37	+1	known	in_frame_ins	c.564_565	p.191in_frame_insLK	0.997:1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531				95	0	0	73	7	8.75
RBM26	0	genome.wustl.edu	37	13	79918807	79918807	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	79918807	79918807	T	-	DEL	RBM26	ENST00000438724	human	ensembl	74_37	-1	known	frame_shift_del	c.2109	p.K703fs	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746				71	0	0	34	7	17.0732
PTMAP5	0	genome.wustl.edu	37	13	82265134	82265134	+	RNA	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	13	82265134	82265134	T	-	DEL	PTMAP5	ENST00000607242	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	PTMAP5	HGNC	ENSG00000214182				79	0	0	14	10	41.6667
CDH24	0	genome.wustl.edu	37	14	23517514	23517514	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	23517514	23517514	G	-	DEL	CDH24	ENST00000267383	human	ensembl	74_37	-1	known	frame_shift_del	c.2135	p.P712fs	0.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880				153	1	0.649351	39	13	25
AP1G2	0	genome.wustl.edu	37	14	24029053	24029053	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	24029053	24029053	G	-	DEL	AP1G2	ENST00000308724	human	ensembl	74_37	-1	known	frame_shift_del	c.2263	p.L755fs	0.891	pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983				46	0	0	34	3	8.10811
SNX6	0	genome.wustl.edu	37	14	35037080	35037081	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	35037080	35037081	-	T	INS	SNX6	ENST00000362031	human	ensembl	74_37	-1	known	frame_shift_ins	c.1097_1096	p.I366fs	1.000:1.000	pfam_Vps5_C,pfam_BAR_dom,pirsf_Snx5_Snx6	pfam_Phox,pfam_Vps5_C,pfam_BAR_dom,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX6	HGNC	ENSG00000129515				82	0	0	65	12	15.5844
GALNT16	0	genome.wustl.edu	37	14	69800299	69800300	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	14	69800299	69800300	-	G	INS	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	frame_shift_ins	c.949_950	p.E320fs	1.000:1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626				88	0	0	45	9	16.6667
DUOX2	0	genome.wustl.edu	37	15	45392986	45392986	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	45392986	45392986	C	-	DEL	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	frame_shift_del	c.2972	p.G991fs	0.055	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				217	0	0	82	16	16.3265
TRIP4	0	genome.wustl.edu	37	15	64689829	64689831	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	64689829	64689831	AAG	-	DEL	TRIP4	ENST00000261884	human	ensembl	74_37	+1	known	in_frame_del	c.430_432	p.K146in_frame_del	1.000:1.000:1.000	NULL	pfam_ASCH_domain,pfam_Znf_C2HC5,superfamily_PUA-like_domain	-	no_errors	TRIP4	HGNC	ENSG00000103671				125	0	0	58	10	14.7059
PLEKHO2	0	genome.wustl.edu	37	15	65157548	65157548	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	15	65157548	65157548	C	-	DEL	PLEKHO2	ENST00000323544	human	ensembl	74_37	+1	known	frame_shift_del	c.934	p.P313fs	0.992	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHO2	HGNC	ENSG00000241839				147	0	0	67	8	10.6667
VWA3A	0	genome.wustl.edu	37	16	22137564	22137565	+	In_Frame_Ins	INS	-	-	GCG			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	22137564	22137565	-	GCG	INS	VWA3A	ENST00000389398	human	ensembl	74_37	+1	known	in_frame_ins	c.1598_1599	p.535in_frame_insR	1.000:0.999	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267				184	0	0	85	11	11.4583
APOBR	0	genome.wustl.edu	37	16	28509223	28509223	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	28509223	28509223	C	-	DEL	APOBR	ENST00000564831	human	ensembl	74_37	+1	known	frame_shift_del	c.2861	p.P955fs	0.000	NULL	NULL	-	no_errors	APOBR	HGNC	ENSG00000184730				43	0	0	14	3	17.6471
ATXN2L	0	genome.wustl.edu	37	16	28844622	28844622	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	28844622	28844622	C	-	DEL	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	frame_shift_del	c.1902	p.P636fs	0.999	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				173	0	0	91	7	7.14286
CYLD	0	genome.wustl.edu	37	16	50825519	50825519	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	50825519	50825519	A	-	DEL	CYLD	ENST00000311559	human	ensembl	74_37	+1	known	frame_shift_del	c.2159	p.N722fs	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_CAP-Gly_domain,pfam_Peptidase_C19/C67,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19/C67	-	no_errors	CYLD	HGNC	ENSG00000083799				104	0	0	66	10	13.1579
TERF2	0	genome.wustl.edu	37	16	69391425	69391425	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	69391425	69391425	T	-	DEL	TERF2	ENST00000254942	human	ensembl	74_37	-1	known	frame_shift_del	c.1466	p.K489fs	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	pfam_Telomere_rpt-bd_fac_dimer_dom,pfam_SANT/Myb,superfamily_Telomere_rpt-bd_fac_dimer_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	-	no_errors	TERF2	HGNC	ENSG00000132604				172	0	0	76	12	13.6364
HPR	0	genome.wustl.edu	37	16	72107693	72107694	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	72107693	72107694	GT	-	DEL	HPR	ENST00000228226	human	ensembl	74_37	+1	known	frame_shift_del	c.19_20	p.C10fs	0.010:0.011	NULL	pirsf_Haptoglobin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	HPR	HGNC	ENSG00000261701				39	0	0	31	8	20.5128
HAGHL	0	genome.wustl.edu	37	16	784641	784641	+	RNA	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	784641	784641	C	-	DEL	HAGHL	ENST00000569604	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	HAGHL	HGNC	ENSG00000103253				127	0	0	60	11	15.493
CDH15	0	genome.wustl.edu	37	16	89260261	89260261	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	16	89260261	89260261	C	-	DEL	CDH15	ENST00000289746	human	ensembl	74_37	+1	known	frame_shift_del	c.2091	p.Q699fs	0.033	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910				78	0	0	17	4	19.0476
FLCN	0	genome.wustl.edu	37	17	17119708	17119709	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	17119708	17119709	-	G	INS	FLCN	ENST00000285071	human	ensembl	74_37	-1	known	frame_shift_ins	c.1286_1285	p.H429fs	1.000:1.000	NULL	pfam_Folliculin	-	no_errors	FLCN	HGNC	ENSG00000154803				47	0	0	17	6	26.087
SYNGR2	0	genome.wustl.edu	37	17	76167865	76167867	+	In_Frame_Del	DEL	GAC	GAC	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	17	76167865	76167867	GAC	-	DEL	SYNGR2	ENST00000225777	human	ensembl	74_37	+1	known	in_frame_del	c.523_525	p.D176in_frame_del	0.859:0.841:0.014	pirsf_Synaptogyrin	pfam_Marvel,pirsf_Synaptogyrin	-	no_errors	SYNGR2	HGNC	ENSG00000108639				194	0	0	78	13	14.2857
COLEC12	0	genome.wustl.edu	37	18	331763	331763	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	18	331763	331763	T	-	DEL	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	frame_shift_del	c.1968	p.K656fs	0.873	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				63	0	0	37	7	15.9091
C19orf26	0	genome.wustl.edu	37	19	1231197	1231197	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	1231197	1231197	G	-	DEL	C19orf26	ENST00000382477	human	ensembl	74_37	-1	known	frame_shift_del	c.1117	p.Q373fs	0.957	NULL	NULL	-	no_errors	C19orf26	HGNC	ENSG00000099625				170	0	0	49	7	12.5
GIPC1	0	genome.wustl.edu	37	19	14593698	14593698	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	14593698	14593698	C	-	DEL	GIPC1	ENST00000345425	human	ensembl	74_37	-1	known	frame_shift_del	c.91	p.E31fs	0.977	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC1	HGNC	ENSG00000123159				9	0	0	5	3	37.5
RGS9BP	0	genome.wustl.edu	37	19	33167776	33167776	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	33167776	33167776	G	-	DEL	RGS9BP	ENST00000334176	human	ensembl	74_37	+1	known	frame_shift_del	c.607	p.G205fs	0.000	NULL	NULL	-	no_errors	RGS9BP	HGNC	ENSG00000186326				34	0	0	8	3	27.2727
ARHGAP33	0	genome.wustl.edu	37	19	36278843	36278843	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	36278843	36278843	C	-	DEL	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	frame_shift_del	c.3376	p.P1127fs	0.997	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777				46	0	0	24	4	14.2857
SIPA1L3	0	genome.wustl.edu	37	19	38572957	38572958	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	38572957	38572958	-	G	INS	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	frame_shift_ins	c.752_753	p.G254fs	0.040:0.042	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				65	0	0	33	5	13.1579
ZNF701	0	genome.wustl.edu	37	19	53086002	53086002	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	53086002	53086002	A	-	DEL	ZNF701	ENST00000301093	human	ensembl	74_37	+1	known	frame_shift_del	c.888	p.K298fs	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562				142	0	0	65	9	12.1622
NLRP4	0	genome.wustl.edu	37	19	56370249	56370249	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	56370249	56370249	T	-	DEL	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	frame_shift_del	c.1490	p.L499fs	0.006	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				218	0	0	84	17	16.8317
ZIM3	0	genome.wustl.edu	37	19	57646555	57646555	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	19	57646555	57646555	T	-	DEL	ZIM3	ENST00000269834	human	ensembl	74_37	-1	known	frame_shift_del	c.1150	p.I384fs	0.890	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946				262	0	0	157	19	10.7955
ACVR2A	0	genome.wustl.edu	37	2	148683727	148683728	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	148683727	148683728	-	G	INS	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_ins	c.1344_1345	p.A448fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				180	0	0	83	32	27.8261
PLA2R1	0	genome.wustl.edu	37	2	160873180	160873181	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	160873180	160873181	-	A	INS	PLA2R1	ENST00000283243	human	ensembl	74_37	-1	known	frame_shift_ins	c.1496_1495	p.Y499fs	0.318:0.335	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246				153	0	0	113	12	9.6
PSMD14	0	genome.wustl.edu	37	2	162227710	162227710	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	162227710	162227710	C	-	DEL	PSMD14	ENST00000409682	human	ensembl	74_37	+1	known	frame_shift_del	c.339	p.H113fs	1.000	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	PSMD14	HGNC	ENSG00000115233				47	0	0	22	4	15.3846
TTN-AS1	0	genome.wustl.edu	37	2	179392051	179392052	+	RNA	INS	-	-	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	179392051	179392052	-	A	INS	TTN-AS1	ENST00000587576	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006:0.007	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				46	0	0	32	9	21.9512
TFPI	0	genome.wustl.edu	37	2	188361620	188361620	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	188361620	188361620	T	-	DEL	TFPI	ENST00000233156	human	ensembl	74_37	-1	known	frame_shift_del	c.307	p.M103fs	0.000	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI	HGNC	ENSG00000003436				129	0	0	58	12	17.1429
CASP8	0	genome.wustl.edu	37	2	202137437	202137438	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	202137437	202137438	TC	-	DEL	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	frame_shift_del	c.665_666	p.A224fs	0.949:0.989	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012				321	0	0	116	12	9.375
UGT1A4	0	genome.wustl.edu	37	2	234627977	234627977	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	234627977	234627977	T	-	DEL	UGT1A4	ENST00000373409	human	ensembl	74_37	+1	known	frame_shift_del	c.511	p.W173fs	0.388	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474				330	0	0	136	33	19.5266
MAPRE3	0	genome.wustl.edu	37	2	27248517	27248517	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	27248517	27248517	C	-	DEL	MAPRE3	ENST00000233121	human	ensembl	74_37	+1	known	frame_shift_del	c.536	p.C182fs	1.000	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,superfamily_EB1_C,pfscan_CH-domain	-	no_errors	MAPRE3	HGNC	ENSG00000084764				123	1	0.806452	62	11	15.0685
CLIP4	0	genome.wustl.edu	37	2	29379233	29379233	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	29379233	29379233	A	-	DEL	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	frame_shift_del	c.1179	p.D396fs	0.787	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295				91	0	0	41	9	18
PSME4	0	genome.wustl.edu	37	2	54093345	54093345	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	54093345	54093345	T	-	DEL	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	frame_shift_del	c.5413	p.T1805fs	1.000	pfam_DUF3437,superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				182	1	0.546448	96	27	21.9512
BCL11A	0	genome.wustl.edu	37	2	60689254	60689254	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	60689254	60689254	G	-	DEL	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	frame_shift_del	c.793	p.L265fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				78	0	0	59	8	11.9403
B3GNT2	0	genome.wustl.edu	37	2	62449455	62449456	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	62449455	62449456	-	A	INS	B3GNT2	ENST00000301998	human	ensembl	74_37	+1	known	frame_shift_ins	c.100_101	p.N36fs	1.000:1.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GNT2	HGNC	ENSG00000170340				199	0	0	137	28	16.9697
KRCC1	0	genome.wustl.edu	37	2	88327536	88327536	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	2	88327536	88327536	T	-	DEL	KRCC1	ENST00000347055	human	ensembl	74_37	-1	known	frame_shift_del	c.547	p.S183fs	0.005	NULL	NULL	-	no_errors	KRCC1	HGNC	ENSG00000172086				167	0	0	100	24	19.3548
NINL	0	genome.wustl.edu	37	20	25485604	25485604	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	25485604	25485604	C	-	DEL	NINL	ENST00000278886	human	ensembl	74_37	-1	known	frame_shift_del	c.628	p.V210fs	0.308	smart_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				79	0	0	37	6	13.9535
PLAGL2	0	genome.wustl.edu	37	20	30789952	30789952	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	30789952	30789952	G	-	DEL	PLAGL2	ENST00000246229	human	ensembl	74_37	-1	known	frame_shift_del	c.30	p.W11fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL2	HGNC	ENSG00000126003				92	0	0	56	7	11.1111
RBL1	0	genome.wustl.edu	37	20	35696449	35696449	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	35696449	35696449	A	-	DEL	RBL1	ENST00000373664	human	ensembl	74_37	-1	known	frame_shift_del	c.431	p.L144fs	1.000	pfam_RB_N	pfam_RB_A,pfam_RB_B,pfam_RB_N,pfam_RB_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839				134	0	0	67	8	10.6667
CTNNBL1	0	genome.wustl.edu	37	20	36361416	36361416	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	36361416	36361416	A	-	DEL	CTNNBL1	ENST00000405275	human	ensembl	74_37	+1	known	frame_shift_del	c.85	p.R31fs	1.000	pfam_CTNNBL1_N	pfam_CTNNBL1_N,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792				78	0	0	20	5	20
ZNF831	0	genome.wustl.edu	37	20	57766219	57766220	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	57766219	57766220	-	C	INS	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	frame_shift_ins	c.145_146	p.T52fs	0.658:0.643	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				89	0	0	40	5	11.1111
SYCP2	0	genome.wustl.edu	37	20	58467047	58467047	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	20	58467047	58467047	T	-	DEL	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_del	c.2362	p.M788fs	0.029	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				63	0	0	40	9	18.3673
H1F0	0	genome.wustl.edu	37	22	38202023	38202023	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	38202023	38202023	A	-	DEL	H1F0	ENST00000340857	human	ensembl	74_37	+1	known	frame_shift_del	c.472	p.K159fs	1.000	prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	H1F0	HGNC	ENSG00000189060				171	0	0	54	9	14.2857
WBP2NL	0	genome.wustl.edu	37	22	42423016	42423016	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	42423016	42423016	C	-	DEL	WBP2NL	ENST00000328823	human	ensembl	74_37	+1	known	frame_shift_del	c.761	p.P255fs	0.000	NULL	pfam_WW-domain-binding,pfam_GRAM	-	no_errors	WBP2NL	HGNC	ENSG00000183066				740	0	0	253	52	17.0492
RABL2B	0	genome.wustl.edu	37	22	51208039	51208039	+	RNA	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	22	51208039	51208039	G	-	DEL	RABL2B	ENST00000465063	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RABL2B	HGNC	ENSG00000079974				95	0	0	33	6	15.3846
NR2C2	0	genome.wustl.edu	37	3	15062405	15062406	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	15062405	15062406	-	A	INS	NR2C2	ENST00000323373	human	ensembl	74_37	+1	known	frame_shift_ins	c.579_580	p.C195fs	0.986:1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C2	HGNC	ENSG00000177463				149	0	0	63	16	20.2532
IQCJ-SCHIP1	0	genome.wustl.edu	37	3	159605580	159605595	+	Frame_Shift_Del	DEL	GCAAAAGAAATTGCAA	GCAAAAGAAATTGCAA	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	GCAAAAGAAATTGCAA	GCAAAAGAAATTGCAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	159605580	159605595	GCAAAAGAAATTGCAA	-	DEL	IQCJ-SCHIP1	ENST00000485419	human	ensembl	74_37	+1	known	frame_shift_del	c.1308_1323	p.Q437fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.994:0.995:1.000:1.000:1.000:1.000:1.000	pfam_SCHIP_1	pfam_SCHIP_1	-	no_errors	IQCJ-SCHIP1	HGNC	ENSG00000250588				218	0	0	138	15	9.80392
TTC14	0	genome.wustl.edu	37	3	180328072	180328073	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	180328072	180328073	-	A	INS	TTC14	ENST00000296015	human	ensembl	74_37	+1	known	frame_shift_ins	c.2055_2056	p.Y687fs	0.161:0.730	NULL	pfam_TPR_1,superfamily_NA-bd_OB-fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	TTC14	HGNC	ENSG00000163728				119	0	0	62	12	16.2162
HES1	0	genome.wustl.edu	37	3	193854469	193854469	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	193854469	193854469	A	-	DEL	HES1	ENST00000232424	human	ensembl	74_37	+1	known	frame_shift_del	c.172	p.T59fs	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_Orange,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,smart_Orange_subgr,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	HES1	HGNC	ENSG00000114315				115	0	0	25	2	7.40741
CPN2	0	genome.wustl.edu	37	3	194062035	194062035	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	194062035	194062035	C	-	DEL	CPN2	ENST00000323830	human	ensembl	74_37	-1	known	frame_shift_del	c.1397	p.G466fs	0.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CPN2	HGNC	ENSG00000178772				220	0	0	82	9	9.89011
DOCK3	0	genome.wustl.edu	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	51417604	51417604	C	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549	p.P1852fs	0.115	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				110	0	0	29	3	9.375
WDR82	0	genome.wustl.edu	37	3	52292655	52292656	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	52292655	52292656	CT	-	DEL	WDR82	ENST00000296490	human	ensembl	74_37	-1	known	frame_shift_del	c.809_808	p.S270fs	1.000:1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR82	HGNC	ENSG00000164091				202	0	0	101	16	13.6752
FLNB	0	genome.wustl.edu	37	3	58089788	58089788	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	58089788	58089788	G	-	DEL	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	frame_shift_del	c.1586	p.G531fs	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				132	0	0	46	7	13.2075
CNTN3	0	genome.wustl.edu	37	3	74548856	74548856	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	3	74548856	74548856	T	-	DEL	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	frame_shift_del	c.136	p.I46fs	0.956	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				149	0	0	71	11	13.4146
TDO2	0	genome.wustl.edu	37	4	156830081	156830090	+	Frame_Shift_Del	DEL	CACCGAGTGT	CACCGAGTGT	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	CACCGAGTGT	CACCGAGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	156830081	156830090	CACCGAGTGT	-	DEL	TDO2	ENST00000536354	human	ensembl	74_37	+1	known	frame_shift_del	c.346_355	p.H116fs	1.000:1.000:0.995:1.000:1.000:0.978:0.986:0.986:0.030:0.003	pfam_Trp_2_3_dOase	pfam_Trp_2_3_dOase	-	no_errors	TDO2	HGNC	ENSG00000151790				98	0	0	56	15	21.1268
ZCCHC4	0	genome.wustl.edu	37	4	25353254	25353254	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	25353254	25353254	T	-	DEL	ZCCHC4	ENST00000302874	human	ensembl	74_37	+1	known	frame_shift_del	c.954	p.F320fs	1.000	NULL	pfam_Znf_GRF,pfam_N6_adenine_Mtase-rel_euk,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZCCHC4	HGNC	ENSG00000168228				211	0	0	75	15	16.6667
MFSD10	0	genome.wustl.edu	37	4	2934405	2934406	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	2934405	2934406	-	C	INS	MFSD10	ENST00000329687	human	ensembl	74_37	-1	known	frame_shift_ins	c.453_452	p.I152fs	1.000:1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD10	HGNC	ENSG00000109736				194	0	0	55	12	17.9104
FRYL	0	genome.wustl.edu	37	4	48604082	48604083	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	48604082	48604083	-	A	INS	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	frame_shift_ins	c.990_989	p.L330fs	1.000:1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				122	1	0.813008	50	9	15.2542
POLR2B	0	genome.wustl.edu	37	4	57888355	57888355	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	57888355	57888355	A	-	DEL	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	frame_shift_del	c.2458	p.G822fs	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				90	0	0	34	10	22.7273
C4orf40	0	genome.wustl.edu	37	4	71024317	71024318	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	4	71024317	71024318	-	T	INS	C4orf40	ENST00000344526	human	ensembl	74_37	+1	known	frame_shift_ins	c.348_349	p.S118fs	0.000:0.000	NULL	NULL	-	no_errors	C4orf40	HGNC	ENSG00000187533				331	0	0	210	17	7.48899
SH3TC2	0	genome.wustl.edu	37	5	148406600	148406605	+	In_Frame_Del	DEL	GATAGT	GATAGT	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	GATAGT	GATAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	148406600	148406605	GATAGT	-	DEL	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	in_frame_del	c.2695_2690	p.NYL897in_frame_delI	0.948:0.949:0.983:0.995:0.981:0.001	NULL	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247				258	0	0	123	29	19.0789
NIPBL	0	genome.wustl.edu	37	5	37064899	37064899	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	37064899	37064899	A	-	DEL	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	frame_shift_del	c.8320	p.I2776fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				97	0	0	49	12	19.6721
LYSMD3	0	genome.wustl.edu	37	5	89815015	89815016	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	89815015	89815016	-	TC	INS	LYSMD3	ENST00000315948	human	ensembl	74_37	-1	known	frame_shift_ins	c.542_541	p.N181fs	1.000:1.000	NULL	pfam_LysM_dom,smart_LysM_dom	-	no_errors	LYSMD3	HGNC	ENSG00000176018				119	0	0	82	12	12.766
ARRDC3	0	genome.wustl.edu	37	5	90678675	90678677	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	90678675	90678677	CTT	-	DEL	ARRDC3	ENST00000265138	human	ensembl	74_37	-1	known	in_frame_del	c.235_233	p.E78in_frame_del	1.000:1.000:1.000	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC3	HGNC	ENSG00000113369				228	0	0	117	15	11.3636
ERAP1	0	genome.wustl.edu	37	5	96126242	96126243	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	5	96126242	96126243	-	T	INS	ERAP1	ENST00000296754	human	ensembl	74_37	-1	known	frame_shift_ins	c.1425_1424	p.N475fs	0.988:1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307				316	0	0	148	22	12.9412
PHACTR1	0	genome.wustl.edu	37	6	13206135	13206135	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	13206135	13206135	G	-	DEL	PHACTR1	ENST00000379350	human	ensembl	74_37	+1	known	frame_shift_del	c.753	p.P254fs	0.087	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137				174	0	0	101	11	9.82143
FAM8A1	0	genome.wustl.edu	37	6	17608495	17608496	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	17608495	17608496	-	T	INS	FAM8A1	ENST00000259963	human	ensembl	74_37	+1	known	frame_shift_ins	c.1167_1168	p.Q391fs	0.998:1.000	pfam_RDD	pfam_RDD	-	no_errors	FAM8A1	HGNC	ENSG00000137414				182	1	0.546448	97	75	43.6047
BAG6	0	genome.wustl.edu	37	6	31617055	31617055	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	31617055	31617055	G	-	DEL	BAG6	ENST00000404765	human	ensembl	74_37	-1	known	frame_shift_del	c.344	p.P115fs	0.993	NULL	pfam_DUF3538,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	BAG6	HGNC	ENSG00000204463				242	0	0	102	16	13.5593
FKBPL	0	genome.wustl.edu	37	6	32096678	32096678	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	32096678	32096678	C	-	DEL	FKBPL	ENST00000375156	human	ensembl	74_37	-1	known	frame_shift_del	c.880	p.V294fs	1.000	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FKBPL	HGNC	ENSG00000204315				229	0	0	115	17	12.8788
FILIP1	0	genome.wustl.edu	37	6	76063371	76063376	+	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	CAGCAA	CAGCAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	6	76063371	76063376	CAGCAA	-	DEL	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	in_frame_del	c.513_508	p.LL170in_frame_del	1.000:1.000:0.997:0.995:1.000:1.000	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407				147	0	0	68	8	10.5263
COG5	0	genome.wustl.edu	37	7	106924081	106924081	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	106924081	106924081	A	-	DEL	COG5	ENST00000297135	human	ensembl	74_37	-1	known	frame_shift_del	c.1503	p.P503fs	0.925	NULL	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597				210	0	0	87	15	14.7059
TAS2R16	0	genome.wustl.edu	37	7	122635598	122635616	+	Frame_Shift_Del	DEL	CTGCAACAATTAGGCTGCT	CTGCAACAATTAGGCTGCT	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	CTGCAACAATTAGGCTGCT	CTGCAACAATTAGGCTGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	122635598	122635616	CTGCAACAATTAGGCTGCT	-	DEL	TAS2R16	ENST00000249284	human	ensembl	74_37	-1	known	frame_shift_del	c.91_73	p.S25fs	0.029:0.004:0.005:0.020:0.040:0.034:0.001:0.000:0.000:0.000:0.000:0.006:0.006:0.035:0.072:0.072:0.102:0.582:0.767	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519				95	0	0	57	9	13.6364
AOC1	0	genome.wustl.edu	37	7	150554028	150554035	+	Frame_Shift_Del	DEL	AAGCCACC	AAGCCACC	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	AAGCCACC	AAGCCACC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	150554028	150554035	AAGCCACC	-	DEL	AOC1	ENST00000416793	human	ensembl	74_37	+1	known	frame_shift_del	c.470_477	p.T159fs	0.005:0.003:0.177:0.196:0.204:0.199:0.044:0.001	pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_N-reg	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC1	HGNC	ENSG00000002726				188	0	0	85	7	7.6087
DNAH11	0	genome.wustl.edu	37	7	21609806	21609806	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	21609806	21609806	A	-	DEL	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	frame_shift_del	c.1314	p.K440fs	0.008	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				148	0	0	80	9	10.1124
ANLN	0	genome.wustl.edu	37	7	36455394	36455394	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	36455394	36455394	A	-	DEL	ANLN	ENST00000265748	human	ensembl	74_37	+1	known	frame_shift_del	c.1423	p.K476fs	0.936	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426				407	1	0.245098	178	22	11
OGDH	0	genome.wustl.edu	37	7	44747227	44747228	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	44747227	44747228	-	C	INS	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	frame_shift_ins	c.2843_2844	p.N950fs	1.000:1.000	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953				238	0	0	127	18	12.4138
TBL2	0	genome.wustl.edu	37	7	72985158	72985158	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	72985158	72985158	G	-	DEL	TBL2	ENST00000305632	human	ensembl	74_37	-1	known	frame_shift_del	c.1023	p.N342fs	0.702	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL2	HGNC	ENSG00000106638				218	0	0	102	25	19.685
PHTF2	0	genome.wustl.edu	37	7	77579112	77579112	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	7	77579112	77579112	A	-	DEL	PHTF2	ENST00000248550	human	ensembl	74_37	+1	known	frame_shift_del	c.2077	p.K694fs	1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF2	HGNC	ENSG00000006576				11	0	0	9	4	30.7692
VPS13B	0	genome.wustl.edu	37	8	100847792	100847793	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	100847792	100847793	-	A	INS	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	frame_shift_ins	c.9843_9844	p.I3283fs	1.000:1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				106	0	0	64	11	14.6667
ATAD2	0	genome.wustl.edu	37	8	124371882	124371882	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	124371882	124371882	A	-	DEL	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	frame_shift_del	c.1201	p.Y401fs	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				95	0	0	57	7	10.9375
MTUS1	0	genome.wustl.edu	37	8	17504627	17504627	+	RNA	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	17504627	17504627	A	-	DEL	MTUS1	ENST00000518889	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MTUS1	HGNC	ENSG00000129422				46	0	0	24	6	20
MYOM2	0	genome.wustl.edu	37	8	2092844	2092844	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	2092844	2092844	C	-	DEL	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	frame_shift_del	c.4337	p.P1447fs	0.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				132	0	0	41	6	12.766
CCAR2	0	genome.wustl.edu	37	8	22472975	22472975	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	22472975	22472975	C	-	DEL	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	frame_shift_del	c.1243	p.R417fs	1.000	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				298	0	0	110	11	9.09091
KCNB2	0	genome.wustl.edu	37	8	73480397	73480397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	73480397	73480397	A	-	DEL	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	frame_shift_del	c.428	p.E146fs	1.000	prints_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				236	1	0.421941	87	14	13.8614
POP1	0	genome.wustl.edu	37	8	99168468	99168468	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	8	99168468	99168468	A	-	DEL	POP1	ENST00000349693	human	ensembl	74_37	+1	known	frame_shift_del	c.2248	p.T752fs	0.001	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				168	0	0	96	24	20
GSN	0	genome.wustl.edu	37	9	124074857	124074857	+	RNA	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	124074857	124074857	A	-	DEL	GSN	ENST00000485767	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GSN	HGNC	ENSG00000148180				12	0	0	9	5	35.7143
KIAA2026	0	genome.wustl.edu	37	9	5968162	5968162	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	5968162	5968162	T	-	DEL	KIAA2026	ENST00000399933	human	ensembl	74_37	-1	novel	frame_shift_del	c.2069	p.K690fs	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354				27	0	0	19	3	13.6364
SMC5	0	genome.wustl.edu	37	9	72961550	72961552	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	72961550	72961552	CTC	-	DEL	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	in_frame_del	c.2553_2555	p.S853in_frame_del	1.000:1.000:1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887				365	0	0	158	23	12.7072
IARS	0	genome.wustl.edu	37	9	95003101	95003101	+	RNA	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	9	95003101	95003101	A	-	DEL	IARS	ENST00000473915	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	IARS	HGNC	ENSG00000196305				16	0	0	17	4	19.0476
ATG4A	0	genome.wustl.edu	37	X	107395166	107395166	+	RNA	DEL	A	A	-			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	107395166	107395166	A	-	DEL	ATG4A	ENST00000474825	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG4A	HGNC	ENSG00000101844				47	0	0	31	7	18.4211
CASK	0	genome.wustl.edu	37	X	41394005	41394006	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8059-01A-11D-2340-08	TCGA-BR-8059-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	157892e9-83f4-44a9-9ad0-4d309678f251	ffe6b1c1-61fa-4e09-9e32-2784a0b4719e	X	41394005	41394006	-	T	INS	CASK	ENST00000378163	human	ensembl	74_37	-1	known	frame_shift_ins	c.2271_2270	p.N757fs	1.000:1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_Prot_kinase_dom,pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Guanylate_kin-like	-	no_errors	CASK	HGNC	ENSG00000147044				102	0	0	34	7	17.0732
