Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CLCC1	0	genome.wustl.edu	37	1	109486496	109486496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	109486496	109486496	C	T	SNP	CLCC1	ENST00000356970	human	ensembl	74_37	-1	known	missense	c.523	p.E175K	1.000	pfam_Chloride_chnl_CLIC-like	pfam_Chloride_chnl_CLIC-like	-	no_errors	CLCC1	HGNC	ENSG00000121940				91	0	0	61	4	6.15385
ATXN7L2	0	genome.wustl.edu	37	1	110030427	110030427	+	Splice_Site	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	110030427	110030427	G	A	SNP	ATXN7L2	ENST00000369870	human	ensembl	74_37	+1	known	splice_site	c.700+1	e5+1	1.000	-	-	-	no_errors	ATXN7L2	HGNC	ENSG00000162650				52	0	0	54	16	22.8571
SPAG17	0	genome.wustl.edu	37	1	118512700	118512700	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	118512700	118512700	T	G	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.6366	p.K2122N	1.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				83	0	0	62	16	20.5128
BCL9	0	genome.wustl.edu	37	1	147090675	147090675	+	Silent	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	147090675	147090675	C	A	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	silent	c.714	p.P238	0.997	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				364	0	0	377	36	8.71671
PI4KB	0	genome.wustl.edu	37	1	151280124	151280124	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	151280124	151280124	G	C	SNP	PI4KB	ENST00000271657	human	ensembl	74_37	-1	known	missense	c.1144	p.P382A	1.000	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393				101	0	0	114	18	13.6364
RPTN	0	genome.wustl.edu	37	1	152127309	152127309	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	152127309	152127309	T	C	SNP	RPTN	ENST00000316073	human	ensembl	74_37	-1	known	missense	c.2266	p.R756G	0.024	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	RPTN	HGNC	ENSG00000215853				751	0	0	560	99	15.0228
LELP1	0	genome.wustl.edu	37	1	153177248	153177248	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	153177248	153177248	A	C	SNP	LELP1	ENST00000368747	human	ensembl	74_37	+1	known	missense	c.65	p.K22T	0.969	NULL	NULL	-	no_errors	LELP1	HGNC	ENSG00000203784				196	0	0	219	13	5.60345
TMEM79	0	genome.wustl.edu	37	1	156255304	156255304	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	156255304	156255304	A	T	SNP	TMEM79	ENST00000295694	human	ensembl	74_37	+1	known	missense	c.287	p.D96V	0.152	NULL	NULL	-	no_errors	TMEM79	HGNC	ENSG00000163472				110	0	0	128	17	11.7241
SH2D2A	0	genome.wustl.edu	37	1	156779164	156779164	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	156779164	156779164	G	T	SNP	SH2D2A	ENST00000392306	human	ensembl	74_37	-1	known	missense	c.863	p.P288H	0.574	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869				308	0	0	426	61	12.5257
IFI16	0	genome.wustl.edu	37	1	159002375	159002375	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	159002375	159002375	A	T	SNP	IFI16	ENST00000295809	human	ensembl	74_37	+1	known	missense	c.1223	p.Q408L	0.199	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565				113	0	0	119	20	14.3885
FCRLB	0	genome.wustl.edu	37	1	161693288	161693288	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	161693288	161693288	T	C	SNP	FCRLB	ENST00000367948	human	ensembl	74_37	+1	known	missense	c.184	p.Y62H	0.999	smart_Ig_sub,pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCRLB	HGNC	ENSG00000162746				230	0	0	229	52	18.5053
LRRC52	0	genome.wustl.edu	37	1	165533027	165533027	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	165533027	165533027	C	T	SNP	LRRC52	ENST00000294818	human	ensembl	74_37	+1	known	missense	c.908	p.T303M	0.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC52	HGNC	ENSG00000162763				159	0	0	39	67	63.2075
TBX19	0	genome.wustl.edu	37	1	168278066	168278066	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	168278066	168278066	A	G	SNP	TBX19	ENST00000367821	human	ensembl	74_37	+1	known	missense	c.1003	p.S335G	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX19	HGNC	ENSG00000143178				193	0	0	115	23	16.6667
LAMB3	0	genome.wustl.edu	37	1	209800302	209800302	+	Silent	SNP	G	G	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	209800302	209800302	G	T	SNP	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	silent	c.1507	p.R503	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878				36	0	0	37	8	17.7778
USH2A	0	genome.wustl.edu	37	1	216062312	216062312	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	216062312	216062312	T	G	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.7679	p.N2560T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				168	0	0	73	27	27
GPATCH2	0	genome.wustl.edu	37	1	217793711	217793711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	217793711	217793711	G	A	SNP	GPATCH2	ENST00000366935	human	ensembl	74_37	-1	known	missense	c.187	p.R63C	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978				211	1	0.471698	85	37	30.3279
OBSCN	0	genome.wustl.edu	37	1	228481873	228481873	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	228481873	228481873	G	C	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.11152	p.E3718Q	0.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				245	0	0	294	36	10.9091
URB2	0	genome.wustl.edu	37	1	229772258	229772258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	229772258	229772258	C	T	SNP	URB2	ENST00000258243	human	ensembl	74_37	+1	known	missense	c.1898	p.P633L	0.015	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763				415	0	0	396	69	14.8387
LYST	0	genome.wustl.edu	37	1	235969870	235969870	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	235969870	235969870	T	C	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.2566	p.T856A	0.001	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				250	0	0	50	178	78.0702
OR2T33	0	genome.wustl.edu	37	1	248437048	248437048	+	Silent	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	248437048	248437048	T	C	SNP	OR2T33	ENST00000318021	human	ensembl	74_37	-1	known	silent	c.69	p.Q23	0.003	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212				153	0	0	130	37	22.1557
MATN1	0	genome.wustl.edu	37	1	31188993	31188993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	31188993	31188993	G	A	SNP	MATN1	ENST00000373765	human	ensembl	74_37	-1	known	missense	c.970	p.R324C	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510				119	1	0.833333	98	22	18.3333
CAMTA1	0	genome.wustl.edu	37	1	7151392	7151392	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	7151392	7151392	A	G	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.263	p.E88G	1.000	pfam_CG-1_dom	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				54	0	0	22	4	15.3846
PKN2	0	genome.wustl.edu	37	1	89250396	89250396	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	89250396	89250396	G	T	SNP	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	missense	c.1060	p.V354F	0.982	superfamily_C2_dom,smart_C2_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243				96	0	0	62	11	15.0685
TMED5	0	genome.wustl.edu	37	1	93622015	93622015	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	1	93622015	93622015	T	C	SNP	TMED5	ENST00000370282	human	ensembl	74_37	-1	known	missense	c.313	p.M105V	1.000	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED5	HGNC	ENSG00000117500				77	0	0	27	17	38.6364
CUEDC2	0	genome.wustl.edu	37	10	104183256	104183256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	10	104183256	104183256	C	T	SNP	CUEDC2	ENST00000369937	human	ensembl	74_37	-1	known	missense	c.791	p.R264Q	1.000	NULL	pfam_CUE,superfamily_UBA-like,pfscan_CUE	-	no_errors	CUEDC2	HGNC	ENSG00000107874				233	0	0	125	60	32.4324
SORCS1	0	genome.wustl.edu	37	10	108380195	108380195	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	10	108380195	108380195	G	A	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	silent	c.2787	p.N929	1.000	superfamily_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				164	0	0	89	43	32.5758
OPTN	0	genome.wustl.edu	37	10	13174190	13174190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	10	13174190	13174190	G	A	SNP	OPTN	ENST00000263036	human	ensembl	74_37	+1	known	missense	c.1525	p.G509R	0.137	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240				144	0	0	89	11	11
PWWP2B	0	genome.wustl.edu	37	10	134218408	134218408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	10	134218408	134218408	C	T	SNP	PWWP2B	ENST00000305233	human	ensembl	74_37	+1	known	missense	c.404	p.T135M	0.999	NULL	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	PWWP2B	HGNC	ENSG00000171813				40	0	0	18	10	35.7143
ZNF25	0	genome.wustl.edu	37	10	38241894	38241894	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	10	38241894	38241894	C	G	SNP	ZNF25	ENST00000302609	human	ensembl	74_37	-1	known	missense	c.532	p.E178Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF25	HGNC	ENSG00000175395				243	0	0	59	21	26.25
FAM13C	0	genome.wustl.edu	37	10	61007424	61007424	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	10	61007424	61007424	T	C	SNP	FAM13C	ENST00000373868	human	ensembl	74_37	-1	known	missense	c.1708	p.R570G	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541				267	0	0	85	36	29.7521
MUC6	0	genome.wustl.edu	37	11	1016404	1016404	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	1016404	1016404	G	A	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.6397	p.P2133S	0.026	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				60	0	0	45	16	26.2295
VWA5A	0	genome.wustl.edu	37	11	123988953	123988953	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	123988953	123988953	G	C	SNP	VWA5A	ENST00000392748	human	ensembl	74_37	+1	known	missense	c.304	p.G102R	1.000	pfam_VIT,smart_VIT	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002				132	0	0	87	17	16.3462
CDON	0	genome.wustl.edu	37	11	125891294	125891294	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	125891294	125891294	T	G	SNP	CDON	ENST00000392693	human	ensembl	74_37	-1	known	missense	c.198	p.K66N	0.048	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CDON	HGNC	ENSG00000064309				143	0	0	85	44	34.1085
C11orf74	0	genome.wustl.edu	37	11	36654982	36654982	+	Silent	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	36654982	36654982	A	G	SNP	C11orf74	ENST00000334307	human	ensembl	74_37	+1	known	silent	c.285	p.E95	1.000	NULL	NULL	-	no_errors	C11orf74	HGNC	ENSG00000166352				65	0	0	31	6	16.2162
FOLH1	0	genome.wustl.edu	37	11	49179550	49179550	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	49179550	49179550	T	C	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	missense	c.1486	p.S496G	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205				111	0	0	54	20	27.027
MS4A14	0	genome.wustl.edu	37	11	60167892	60167892	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	60167892	60167892	T	C	SNP	MS4A14	ENST00000300187	human	ensembl	74_37	+1	known	missense	c.283	p.Y95H	0.336	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928				34	0	0	13	4	23.5294
PHRF1	0	genome.wustl.edu	37	11	611720	611720	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	611720	611720	C	T	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	silent	c.4893	p.R1631	0.852	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				55	0	0	31	29	48.3333
KDM2A	0	genome.wustl.edu	37	11	67015837	67015837	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	67015837	67015837	C	G	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	missense	c.2051	p.A684G	0.999	superfamily_Znf_FYVE_PHD	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				24	0	0	25	3	10.7143
CTTN	0	genome.wustl.edu	37	11	70260669	70260669	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	70260669	70260669	C	T	SNP	CTTN	ENST00000301843	human	ensembl	74_37	+1	known	nonsense	c.313	p.Q105*	1.000	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733				177	0	0	64	107	62.5731
SYT9	0	genome.wustl.edu	37	11	7334732	7334732	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	7334732	7334732	T	G	SNP	SYT9	ENST00000318881	human	ensembl	74_37	+1	known	missense	c.604	p.L202V	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743				133	0	0	92	20	17.8571
SLCO2B1	0	genome.wustl.edu	37	11	74899258	74899258	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	74899258	74899258	C	A	SNP	SLCO2B1	ENST00000289575	human	ensembl	74_37	+1	known	missense	c.1050	p.N350K	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO2B1	HGNC	ENSG00000137491				60	0	0	70	11	13.5802
ALG8	0	genome.wustl.edu	37	11	77835179	77835179	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	77835179	77835179	C	G	SNP	ALG8	ENST00000299626	human	ensembl	74_37	-1	known	missense	c.256	p.D86H	1.000	pfam_Glyco_trans_ALG6/ALG8	pfam_Glyco_trans_ALG6/ALG8	-	no_errors	ALG8	HGNC	ENSG00000159063				222	0	0	177	37	17.2897
FAT3	0	genome.wustl.edu	37	11	92531644	92531644	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	92531644	92531644	A	G	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.5465	p.K1822R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				48	0	0	8	9	52.9412
FOLR4	0	genome.wustl.edu	37	11	94039817	94039817	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	94039817	94039817	G	A	SNP	FOLR4	ENST00000440961	human	ensembl	74_37	+1	novel	missense	c.277	p.A93T	1.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR4	HGNC	ENSG00000183560				190	0	0	42	43	50.5882
KIAA1033	0	genome.wustl.edu	37	12	105553927	105553927	+	Splice_Site	SNP	G	G	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	12	105553927	105553927	G	T	SNP	KIAA1033	ENST00000332180	human	ensembl	74_37	+1	known	splice_site	c.3060+1	e29+1	1.000	-	-	-	no_errors	KIAA1033	HGNC	ENSG00000136051				194	0	0	30	43	58.9041
UBE3B	0	genome.wustl.edu	37	12	109945444	109945444	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	12	109945444	109945444	A	C	SNP	UBE3B	ENST00000342494	human	ensembl	74_37	+1	known	missense	c.1526	p.K509T	0.996	NULL	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148				158	0	0	141	45	24.1935
PTPRO	0	genome.wustl.edu	37	12	15661640	15661640	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	12	15661640	15661640	T	A	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	missense	c.1403	p.V468E	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490				124	0	0	56	32	36.3636
ATF1	0	genome.wustl.edu	37	12	51203290	51203290	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	12	51203290	51203290	C	T	SNP	ATF1	ENST00000262053	human	ensembl	74_37	+1	known	silent	c.246	p.D82	1.000	pfam_Coactivator_CBP_pKID,pfscan_Coactivator_CBP_pKID	pfam_bZIP,pfam_Coactivator_CBP_pKID,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	ATF1	HGNC	ENSG00000123268				140	1	0.70922	71	7	8.97436
ESYT1	0	genome.wustl.edu	37	12	56525074	56525074	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	12	56525074	56525074	T	G	SNP	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	missense	c.688	p.C230G	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641				164	0	0	128	73	36.3184
SMARCC2	0	genome.wustl.edu	37	12	56559402	56559402	+	Silent	SNP	G	G	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	12	56559402	56559402	G	T	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	silent	c.2839	p.R947	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				105	0	0	116	40	25.641
RDH16	0	genome.wustl.edu	37	12	57348835	57348835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	12	57348835	57348835	C	T	SNP	RDH16	ENST00000398138	human	ensembl	74_37	-1	known	missense	c.427	p.D143N	0.972	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH16	HGNC	ENSG00000139547				137	0	0	108	23	17.5573
NCAPD2	0	genome.wustl.edu	37	12	6637165	6637165	+	Silent	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	12	6637165	6637165	C	A	SNP	NCAPD2	ENST00000315579	human	ensembl	74_37	+1	known	silent	c.3051	p.L1017	0.313	superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292				203	0	0	52	151	74.3842
CLEC4D	0	genome.wustl.edu	37	12	8670761	8670761	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	12	8670761	8670761	G	A	SNP	CLEC4D	ENST00000299665	human	ensembl	74_37	+1	known	silent	c.123	p.V41	0.832	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4D	HGNC	ENSG00000166527				28	0	0	19	6	24
EPYC	0	genome.wustl.edu	37	12	91371992	91371992	+	Silent	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	12	91371992	91371992	A	G	SNP	EPYC	ENST00000261172	human	ensembl	74_37	-1	known	silent	c.213	p.T71	0.971	NULL	pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	EPYC	HGNC	ENSG00000083782				155	0	0	64	18	21.9512
ADPRHL1	0	genome.wustl.edu	37	13	114079444	114079444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	13	114079444	114079444	C	T	SNP	ADPRHL1	ENST00000375418	human	ensembl	74_37	-1	known	missense	c.697	p.E233K	1.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	-	no_errors	ADPRHL1	HGNC	ENSG00000153531				178	0	0	75	26	25.7426
RCBTB2	0	genome.wustl.edu	37	13	49089853	49089853	+	Silent	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	13	49089853	49089853	A	G	SNP	RCBTB2	ENST00000430805	human	ensembl	74_37	-1	known	silent	c.82	p.L28	0.113	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB2	HGNC	ENSG00000136161				178	0	0	34	110	76.3889
WARS	0	genome.wustl.edu	37	14	100835430	100835430	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	14	100835430	100835430	C	T	SNP	WARS	ENST00000355338	human	ensembl	74_37	-1	known	silent	c.93	p.A31	0.000	pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS	pfam_aa-tRNA-synth_Ic,pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS	HGNC	ENSG00000140105				52	0	0	31	10	24.3902
SNORD114-19	0	genome.wustl.edu	37	14	101442848	101442848	+	RNA	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	14	101442848	101442848	T	G	SNP	SNORD114-19	ENST00000363072	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD114-19	HGNC	ENSG00000199942				183	0	0	70	24	25.5319
EIF5	0	genome.wustl.edu	37	14	103806804	103806804	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	14	103806804	103806804	T	G	SNP	EIF5	ENST00000216554	human	ensembl	74_37	+1	known	missense	c.1112	p.I371S	1.000	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	pfam_Transl_init_fac_IF2/IF5,pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5,smart_W2_domain	-	no_errors	EIF5	HGNC	ENSG00000100664				390	0	0	136	52	27.6596
JAG2	0	genome.wustl.edu	37	14	105615612	105615612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	14	105615612	105615612	G	A	SNP	JAG2	ENST00000331782	human	ensembl	74_37	-1	known	missense	c.1648	p.R550C	0.019	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	JAG2	HGNC	ENSG00000184916				289	0	0	71	129	64.5
MIS18BP1	0	genome.wustl.edu	37	14	45716149	45716149	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	14	45716149	45716149	A	T	SNP	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	missense	c.341	p.I114K	1.000	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				118	0	0	62	10	13.8889
SERPINA10	0	genome.wustl.edu	37	14	94754710	94754710	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	14	94754710	94754710	A	G	SNP	SERPINA10	ENST00000261994	human	ensembl	74_37	-1	known	missense	c.905	p.L302P	0.804	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA10	HGNC	ENSG00000140093				120	0	0	53	26	32.9114
KLF13	0	genome.wustl.edu	37	15	31664287	31664287	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	15	31664287	31664287	T	C	SNP	KLF13	ENST00000307145	human	ensembl	74_37	+1	known	missense	c.652	p.Y218H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF13	HGNC	ENSG00000169926				55	0	0	18	19	51.3514
AQR	0	genome.wustl.edu	37	15	35219320	35219320	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	15	35219320	35219320	A	G	SNP	AQR	ENST00000156471	human	ensembl	74_37	-1	known	missense	c.1034	p.F345S	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	AQR	HGNC	ENSG00000021776				64	0	0	34	4	10.5263
SNAP23	0	genome.wustl.edu	37	15	42823723	42823723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	15	42823723	42823723	C	T	SNP	SNAP23	ENST00000564153	human	ensembl	74_37	+1	putative	missense	c.379	p.P127S	0.969	NULL	smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	SNAP23	HGNC	ENSG00000092531				79	0	0	58	8	12.1212
TLN2	0	genome.wustl.edu	37	15	63014609	63014609	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	15	63014609	63014609	G	C	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.3049	p.A1017P	1.000	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				52	0	0	39	10	20.4082
NOX5	0	genome.wustl.edu	37	15	69348915	69348915	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	15	69348915	69348915	A	C	SNP	NOX5	ENST00000388866	human	ensembl	74_37	+1	known	missense	c.2177	p.K726T	0.994	pfam_Fe_red_NAD-bd_6	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NOX5	HGNC	ENSG00000255346				153	0	0	99	29	22.6562
RASGRF1	0	genome.wustl.edu	37	15	79284095	79284095	+	Silent	SNP	G	G	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	15	79284095	79284095	G	C	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	silent	c.3117	p.A1039	0.995	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				137	0	0	120	25	17.2414
ACAN	0	genome.wustl.edu	37	15	89400224	89400224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	15	89400224	89400224	C	T	SNP	ACAN	ENST00000439576	human	ensembl	74_37	+1	known	missense	c.4408	p.L1470F	0.794	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766				290	0	0	150	42	21.875
IQGAP1	0	genome.wustl.edu	37	15	90996055	90996055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	15	90996055	90996055	C	T	SNP	IQGAP1	ENST00000268182	human	ensembl	74_37	+1	known	missense	c.1211	p.A404V	0.993	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_WW_dom,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575				143	0	0	63	53	45.6897
TELO2	0	genome.wustl.edu	37	16	1544428	1544428	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	16	1544428	1544428	G	A	SNP	TELO2	ENST00000262319	human	ensembl	74_37	+1	known	missense	c.146	p.R49K	0.001	NULL	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726				377	0	0	273	77	22
IRX6	0	genome.wustl.edu	37	16	55361536	55361536	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	16	55361536	55361536	A	C	SNP	IRX6	ENST00000290552	human	ensembl	74_37	+1	known	missense	c.452	p.K151T	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX6	HGNC	ENSG00000159387				59	0	0	40	16	28.5714
ADAMTS18	0	genome.wustl.edu	37	16	77387681	77387681	+	Silent	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	16	77387681	77387681	A	G	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	silent	c.1563	p.C521	1.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				179	0	0	68	35	33.9806
MYH4	0	genome.wustl.edu	37	17	10366495	10366495	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	10366495	10366495	C	T	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	silent	c.816	p.E272	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424				73	0	0	28	12	30
NCOR1	0	genome.wustl.edu	37	17	15974752	15974752	+	Silent	SNP	G	G	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	15974752	15974752	G	T	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	silent	c.4123	p.R1375	0.844	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				272	0	0	98	32	24.6154
PLD6	0	genome.wustl.edu	37	17	17106258	17106258	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	17106258	17106258	G	A	SNP	PLD6	ENST00000321560	human	ensembl	74_37	-1	known	silent	c.582	p.Y194	0.344	NULL	smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD6	HGNC	ENSG00000179598				182	0	0	74	33	30.8411
TNFAIP1	0	genome.wustl.edu	37	17	26667426	26667426	+	Silent	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	26667426	26667426	A	G	SNP	TNFAIP1	ENST00000226225	human	ensembl	74_37	+1	known	silent	c.297	p.Q99	0.999	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	TNFAIP1	HGNC	ENSG00000109079				185	0	0	174	10	5.43478
BLMH	0	genome.wustl.edu	37	17	28614874	28614874	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	28614874	28614874	A	T	SNP	BLMH	ENST00000261714	human	ensembl	74_37	-1	known	missense	c.413	p.M138K	0.908	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	-	no_errors	BLMH	HGNC	ENSG00000108578				118	0	0	31	39	55.7143
ASIC2	0	genome.wustl.edu	37	17	31352970	31352970	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	31352970	31352970	T	C	SNP	ASIC2	ENST00000225823	human	ensembl	74_37	-1	known	missense	c.1169	p.H390R	1.000	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC2	HGNC	ENSG00000108684				77	0	0	58	18	23.6842
TMEM132E	0	genome.wustl.edu	37	17	32953187	32953187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	32953187	32953187	C	T	SNP	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	missense	c.109	p.P37S	0.002	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				14	0	0	5	6	54.5455
MED1	0	genome.wustl.edu	37	17	37564790	37564790	+	Silent	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	37564790	37564790	A	G	SNP	MED1	ENST00000300651	human	ensembl	74_37	-1	known	silent	c.3684	p.G1228	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				121	0	0	108	28	20.5882
KRT40	0	genome.wustl.edu	37	17	39137394	39137394	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	39137394	39137394	A	C	SNP	KRT40	ENST00000377755	human	ensembl	74_37	-1	known	missense	c.697	p.L233V	0.000	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT40	HGNC	ENSG00000204889				166	0	0	104	9	7.9646
KRTAP9-4	0	genome.wustl.edu	37	17	39406137	39406137	+	Silent	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	39406137	39406137	T	G	SNP	KRTAP9-4	ENST00000334109	human	ensembl	74_37	+1	known	silent	c.165	p.T55	0.054	NULL	NULL	-	no_errors	KRTAP9-4	HGNC	ENSG00000241595				172	0	0	127	111	46.6387
CNTNAP1	0	genome.wustl.edu	37	17	40839790	40839790	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	40839790	40839790	G	A	SNP	CNTNAP1	ENST00000264638	human	ensembl	74_37	+1	known	missense	c.1097	p.G366E	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797				166	0	0	187	57	23.3607
C17orf64	0	genome.wustl.edu	37	17	58506848	58506848	+	Silent	SNP	C	C	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	58506848	58506848	C	G	SNP	C17orf64	ENST00000269127	human	ensembl	74_37	+1	known	silent	c.555	p.S185	1.000	NULL	NULL	-	no_errors	C17orf64	HGNC	ENSG00000141371				95	0	0	104	16	13.3333
DNAH17	0	genome.wustl.edu	37	17	76455190	76455190	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	76455190	76455190	A	T	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	missense	c.9712	p.Y3238N	1.000	superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				448	0	0	228	190	45.4545
CTC1	0	genome.wustl.edu	37	17	8136252	8136252	+	Silent	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	8136252	8136252	A	G	SNP	CTC1	ENST00000315684	human	ensembl	74_37	-1	known	silent	c.1917	p.S639	0.000	NULL	NULL	-	no_errors	CTC1	HGNC	ENSG00000178971				411	0	0	163	74	31.2236
ANKRD30B	0	genome.wustl.edu	37	18	14851674	14851674	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	18	14851674	14851674	A	G	SNP	ANKRD30B	ENST00000358984	human	ensembl	74_37	+1	known	missense	c.3374	p.E1125G	0.742	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30B	HGNC	ENSG00000180777				112	0	0	118	18	13.2353
CHST9	0	genome.wustl.edu	37	18	24496464	24496464	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	18	24496464	24496464	T	C	SNP	CHST9	ENST00000284224	human	ensembl	74_37	-1	known	missense	c.1091	p.Y364C	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080				191	0	0	78	37	32.1739
PSTPIP2	0	genome.wustl.edu	37	18	43568704	43568704	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	18	43568704	43568704	A	C	SNP	PSTPIP2	ENST00000409746	human	ensembl	74_37	-1	known	missense	c.977	p.V326G	0.002	NULL	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	PSTPIP2	HGNC	ENSG00000152229				88	0	0	24	10	29.4118
PTPRM	0	genome.wustl.edu	37	18	8376569	8376569	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	18	8376569	8376569	C	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.3439	p.R1147W	0.940	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				101	0	0	116	122	51.2605
RGL3	0	genome.wustl.edu	37	19	11515827	11515827	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	11515827	11515827	A	G	SNP	RGL3	ENST00000393423	human	ensembl	74_37	-1	known	missense	c.1181	p.F394S	0.192	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517				307	0	0	142	49	25.6545
ZNF439	0	genome.wustl.edu	37	19	11978372	11978372	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	11978372	11978372	C	T	SNP	ZNF439	ENST00000304030	human	ensembl	74_37	+1	known	missense	c.488	p.P163L	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF439	HGNC	ENSG00000171291				382	0	0	136	8	5.55556
SYDE1	0	genome.wustl.edu	37	19	15222474	15222474	+	Silent	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	15222474	15222474	C	A	SNP	SYDE1	ENST00000342784	human	ensembl	74_37	+1	known	silent	c.1449	p.P483	0.847	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137				148	0	0	89	5	5.31915
RAB3A	0	genome.wustl.edu	37	19	18313419	18313419	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	18313419	18313419	G	A	SNP	RAB3A	ENST00000222256	human	ensembl	74_37	-1	known	silent	c.132	p.D44	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3A	HGNC	ENSG00000105649				347	0	0	87	150	63.2911
ZNF208	0	genome.wustl.edu	37	19	22156960	22156960	+	Silent	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	22156960	22156960	T	C	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	silent	c.876	p.K292	0.014	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				88	0	0	32	15	31.9149
ZNF208	0	genome.wustl.edu	37	19	22171703	22171703	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	22171703	22171703	C	T	SNP	ZNF208	ENST00000599916	human	ensembl	74_37	-1	putative	silent	c.12	p.L4	0.165	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				282	0	0	129	7	5.14706
DMKN	0	genome.wustl.edu	37	19	36004180	36004180	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	36004180	36004180	T	G	SNP	DMKN	ENST00000339686	human	ensembl	74_37	-1	known	missense	c.198	p.K66N	0.021	NULL	NULL	-	no_errors	DMKN	HGNC	ENSG00000161249				190	0	0	108	49	31.2102
CATSPERG	0	genome.wustl.edu	37	19	38855535	38855535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	38855535	38855535	C	T	SNP	CATSPERG	ENST00000409235	human	ensembl	74_37	+1	known	missense	c.2480	p.T827M	0.004	NULL	NULL	-	no_errors	CATSPERG	HGNC	ENSG00000099338				154	0	0	66	19	22.3529
CD3EAP	0	genome.wustl.edu	37	19	45912143	45912143	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	45912143	45912143	C	A	SNP	CD3EAP	ENST00000589804	human	ensembl	74_37	+1	known	missense	c.923	p.T308K	0.000	NULL	pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	CD3EAP	HGNC	ENSG00000117877				248	0	0	186	16	7.92079
CEACAM18	0	genome.wustl.edu	37	19	51981912	51981912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	51981912	51981912	C	T	SNP	CEACAM18	ENST00000451626	human	ensembl	74_37	+1	known	missense	c.199	p.P67S	0.001	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM18	HGNC	ENSG00000213822				45	0	0	22	8	26.6667
ZNF534	0	genome.wustl.edu	37	19	52937309	52937309	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	52937309	52937309	G	A	SNP	ZNF534	ENST00000332323	human	ensembl	74_37	+1	known	silent	c.117	p.E39	0.750	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633				169	0	0	70	22	23.913
ZNF701	0	genome.wustl.edu	37	19	53085474	53085474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	53085474	53085474	G	A	SNP	ZNF701	ENST00000301093	human	ensembl	74_37	+1	known	missense	c.360	p.M120I	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562				132	0	0	49	11	18.3333
SAFB2	0	genome.wustl.edu	37	19	5587356	5587356	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	5587356	5587356	G	A	SNP	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	silent	c.2760	p.G920	0.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				31	0	0	14	16	53.3333
LPPR3	0	genome.wustl.edu	37	19	815823	815823	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	815823	815823	G	T	SNP	LPPR3	ENST00000359894	human	ensembl	74_37	-1	known	missense	c.104	p.S35Y	1.000	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR3	Uniprot_gn	ENSG00000129951				85	0	0	27	68	71.5789
MUC16	0	genome.wustl.edu	37	19	9070244	9070244	+	Silent	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	9070244	9070244	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.17202	p.S5734	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				175	0	0	65	32	32.9897
MUC16	0	genome.wustl.edu	37	19	9085239	9085239	+	Silent	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	9085239	9085239	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.6576	p.V2192	0.009	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				49	0	0	34	15	30.6122
MUC16	0	genome.wustl.edu	37	19	9086391	9086391	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	19	9086391	9086391	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.5424	p.K1808N	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				137	0	0	50	32	39.0244
RRM2	0	genome.wustl.edu	37	2	10269026	10269026	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	10269026	10269026	C	G	SNP	RRM2	ENST00000360566	human	ensembl	74_37	+1	known	missense	c.1030	p.P344A	1.000	pfam_RNR_small,superfamily_Ferritin-like_SF	pfam_RNR_small,superfamily_Ferritin-like_SF	-	no_errors	RRM2	HGNC	ENSG00000171848				77	0	0	32	12	27.2727
PAX8	0	genome.wustl.edu	37	2	114004419	114004419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	114004419	114004419	C	T	SNP	PAX8	ENST00000429538	human	ensembl	74_37	-1	known	missense	c.103	p.V35I	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX8	HGNC	ENSG00000125618				65	0	0	70	20	22.2222
DDX18	0	genome.wustl.edu	37	2	118582244	118582244	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	118582244	118582244	A	C	SNP	DDX18	ENST00000263239	human	ensembl	74_37	+1	known	missense	c.1166	p.D389A	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX18	HGNC	ENSG00000088205				320	0	0	164	54	24.7706
CNTNAP5	0	genome.wustl.edu	37	2	125405355	125405355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	125405355	125405355	G	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.1894	p.V632M	0.974	superfamily_Fibrinogen_a/b/g_C_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				35	0	0	37	6	13.9535
TRIB2	0	genome.wustl.edu	37	2	12880833	12880833	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	12880833	12880833	G	A	SNP	TRIB2	ENST00000155926	human	ensembl	74_37	+1	known	silent	c.945	p.S315	0.735	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575				127	0	0	32	14	30.4348
NCKAP5	0	genome.wustl.edu	37	2	133541340	133541340	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	133541340	133541340	A	G	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.3044	p.V1015A	0.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				30	0	0	42	9	17.6471
NCKAP5	0	genome.wustl.edu	37	2	133541966	133541966	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	133541966	133541966	C	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.2418	p.R806S	0.729	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				420	1	0.23753	152	146	48.9933
NXPH2	0	genome.wustl.edu	37	2	139428996	139428996	+	Silent	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	139428996	139428996	A	G	SNP	NXPH2	ENST00000272641	human	ensembl	74_37	-1	known	silent	c.291	p.T97	1.000	pfam_NXPH/NXPE,pirsf_Neurexophilin	pfam_NXPH/NXPE,pirsf_Neurexophilin	-	no_errors	NXPH2	HGNC	ENSG00000144227				116	0	0	74	19	20.4301
TANC1	0	genome.wustl.edu	37	2	160035442	160035442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	160035442	160035442	G	A	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	missense	c.2278	p.V760M	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				406	0	0	253	93	26.8786
TTN	0	genome.wustl.edu	37	2	179647007	179647007	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	179647007	179647007	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.3312	p.Q1104H	0.919	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				146	0	0	99	28	22.0472
ASNSD1	0	genome.wustl.edu	37	2	190531620	190531620	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	190531620	190531620	G	A	SNP	ASNSD1	ENST00000260952	human	ensembl	74_37	+1	known	silent	c.762	p.E254	0.000	NULL	pfam_Asn_synthase	-	no_errors	ASNSD1	HGNC	ENSG00000138381				171	0	0	108	22	16.9231
CXCR2P1	0	genome.wustl.edu	37	2	218925585	218925585	+	RNA	SNP	A	A	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	218925585	218925585	A	T	SNP	CXCR2P1	ENST00000439871	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CXCR2P1	HGNC	ENSG00000229754				56	0	0	65	11	14.4737
SLC11A1	0	genome.wustl.edu	37	2	219247696	219247696	+	Silent	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	219247696	219247696	C	A	SNP	SLC11A1	ENST00000233202	human	ensembl	74_37	+1	known	silent	c.21	p.P7	0.058	NULL	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	-	no_errors	SLC11A1	HGNC	ENSG00000018280				145	0	0	193	25	11.4679
INHA	0	genome.wustl.edu	37	2	220437172	220437172	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	220437172	220437172	C	T	SNP	INHA	ENST00000243786	human	ensembl	74_37	+1	known	missense	c.76	p.R26W	0.999	pirsf_Inhibin_asu_subgr	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999				83	0	0	54	17	23.9437
SP140	0	genome.wustl.edu	37	2	231109728	231109728	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	231109728	231109728	G	C	SNP	SP140	ENST00000392045	human	ensembl	74_37	+1	known	missense	c.597	p.Q199H	0.000	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263				116	0	0	74	10	11.9048
SP140	0	genome.wustl.edu	37	2	231112742	231112742	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	231112742	231112742	A	T	SNP	SP140	ENST00000392045	human	ensembl	74_37	+1	known	missense	c.854	p.K285M	0.012	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263				137	0	0	83	16	16.1616
CCDC121	0	genome.wustl.edu	37	2	27850634	27850634	+	Silent	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	27850634	27850634	A	G	SNP	CCDC121	ENST00000394775	human	ensembl	74_37	-1	known	silent	c.519	p.A173	0.000	NULL	NULL	-	no_errors	CCDC121	HGNC	ENSG00000176714				311	0	0	127	26	16.9935
XDH	0	genome.wustl.edu	37	2	31625920	31625920	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	31625920	31625920	T	C	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	missense	c.191	p.K64R	0.608	pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125				139	0	0	83	37	30.8333
SRD5A2	0	genome.wustl.edu	37	2	31805911	31805911	+	RNA	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	31805911	31805911	A	C	SNP	SRD5A2	ENST00000233139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SRD5A2	HGNC	ENSG00000049319				78	0	0	35	14	28.5714
NDUFAF7	0	genome.wustl.edu	37	2	37473231	37473231	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	37473231	37473231	G	A	SNP	NDUFAF7	ENST00000002125	human	ensembl	74_37	+1	known	missense	c.829	p.D277N	1.000	pfam_MidA	pfam_MidA	-	no_errors	NDUFAF7	HGNC	ENSG00000003509				75	0	0	21	6	22.2222
VWA3B	0	genome.wustl.edu	37	2	98809371	98809371	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	2	98809371	98809371	C	G	SNP	VWA3B	ENST00000477737	human	ensembl	74_37	+1	known	missense	c.1477	p.L493V	1.000	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658				135	0	0	59	19	24.359
BTBD3	0	genome.wustl.edu	37	20	11904024	11904024	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	20	11904024	11904024	G	T	SNP	BTBD3	ENST00000378226	human	ensembl	74_37	+1	known	nonsense	c.1279	p.E427*	1.000	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640				147	0	0	124	12	8.82353
SCP2D1	0	genome.wustl.edu	37	20	18794654	18794654	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	20	18794654	18794654	A	C	SNP	SCP2D1	ENST00000377428	human	ensembl	74_37	+1	known	missense	c.195	p.K65N	1.000	pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom	pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom	-	no_errors	SCP2D1	HGNC	ENSG00000132631				110	1	0.900901	104	18	14.7541
MYLK2	0	genome.wustl.edu	37	20	30414609	30414609	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	20	30414609	30414609	C	T	SNP	MYLK2	ENST00000375985	human	ensembl	74_37	+1	known	silent	c.1092	p.G364	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306				44	0	0	63	4	5.97015
ZNF341	0	genome.wustl.edu	37	20	32378892	32378892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	20	32378892	32378892	C	T	SNP	ZNF341	ENST00000375200	human	ensembl	74_37	+1	known	missense	c.2134	p.R712C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF341	HGNC	ENSG00000131061				89	0	0	94	15	13.7615
TTI1	0	genome.wustl.edu	37	20	36625324	36625324	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	20	36625324	36625324	T	C	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	missense	c.2825	p.D942G	1.000	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				151	0	0	137	71	34.1346
KIAA1755	0	genome.wustl.edu	37	20	36870174	36870174	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	20	36870174	36870174	A	G	SNP	KIAA1755	ENST00000279024	human	ensembl	74_37	-1	known	missense	c.359	p.M120T	0.900	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633				185	0	0	207	45	17.8571
TRIB3	0	genome.wustl.edu	37	20	372101	372101	+	Silent	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	20	372101	372101	C	A	SNP	TRIB3	ENST00000422053	human	ensembl	74_37	+1	known	silent	c.543	p.I181	0.049	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	TRIB3	HGNC	ENSG00000101255				48	0	0	92	8	8
CHD6	0	genome.wustl.edu	37	20	40143545	40143545	+	Silent	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	20	40143545	40143545	T	G	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	silent	c.601	p.R201	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				103	0	0	93	20	17.6991
SEMG1	0	genome.wustl.edu	37	20	43836128	43836128	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	20	43836128	43836128	T	C	SNP	SEMG1	ENST00000372781	human	ensembl	74_37	+1	known	missense	c.190	p.S64P	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG1	HGNC	ENSG00000124233				202	0	0	170	11	6.07735
NFATC2	0	genome.wustl.edu	37	20	50140514	50140514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	20	50140514	50140514	G	A	SNP	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	missense	c.266	p.P89L	0.999	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096				161	0	0	139	35	20.1149
TAF4	0	genome.wustl.edu	37	20	60575623	60575623	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	20	60575623	60575623	T	C	SNP	TAF4	ENST00000252996	human	ensembl	74_37	-1	known	missense	c.2641	p.R881G	0.993	pfam_TAF4,superfamily_Histone-fold	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4	HGNC	ENSG00000130699				159	0	0	91	48	34.5324
UMODL1	0	genome.wustl.edu	37	21	43557706	43557706	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	21	43557706	43557706	C	T	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	silent	c.4317	p.F1439	0.979	NULL	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				151	0	0	85	24	22.0183
DIP2A	0	genome.wustl.edu	37	21	47931405	47931405	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	21	47931405	47931405	C	T	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	missense	c.983	p.A328V	0.045	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305				34	0	0	33	13	28.2609
CCT8L2	0	genome.wustl.edu	37	22	17072063	17072063	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	22	17072063	17072063	C	G	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	missense	c.1378	p.V460L	0.002	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				228	0	0	88	40	31.25
CECR1	0	genome.wustl.edu	37	22	17662401	17662401	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	22	17662401	17662401	T	A	SNP	CECR1	ENST00000262607	human	ensembl	74_37	-1	known	missense	c.1508	p.K503M	0.935	tigrfam_Ad_deam-like	pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like	-	no_errors	CECR1	HGNC	ENSG00000093072				526	0	0	92	145	61.1814
SPECC1L	0	genome.wustl.edu	37	22	24726243	24726243	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	22	24726243	24726243	G	T	SNP	SPECC1L	ENST00000314328	human	ensembl	74_37	+1	known	missense	c.2240	p.R747L	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_bHLH_dom,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1L	HGNC	ENSG00000100014				343	1	0.290698	202	59	22.6054
CSF2RB	0	genome.wustl.edu	37	22	37334080	37334080	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	22	37334080	37334080	T	G	SNP	CSF2RB	ENST00000262825	human	ensembl	74_37	+1	known	missense	c.2248	p.L750V	0.000	pirsf_IL3_rcpt_beta	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368				116	0	0	81	21	20.5882
GPR156	0	genome.wustl.edu	37	3	119887179	119887179	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	119887179	119887179	T	G	SNP	GPR156	ENST00000315843	human	ensembl	74_37	-1	known	missense	c.1145	p.K382T	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GPR156	HGNC	ENSG00000175697				135	0	0	51	42	45.1613
TOPBP1	0	genome.wustl.edu	37	3	133341985	133341985	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	133341985	133341985	T	C	SNP	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	missense	c.3128	p.N1043S	0.001	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781				68	0	0	30	5	14.2857
CPB1	0	genome.wustl.edu	37	3	148575294	148575294	+	Silent	SNP	C	C	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	148575294	148575294	C	G	SNP	CPB1	ENST00000282957	human	ensembl	74_37	+1	known	silent	c.1032	p.T344	0.932	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB1	HGNC	ENSG00000153002				97	0	0	111	10	8.26446
HLTF	0	genome.wustl.edu	37	3	148763879	148763879	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	148763879	148763879	G	C	SNP	HLTF	ENST00000310053	human	ensembl	74_37	-1	known	missense	c.2060	p.A687G	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HLTF	HGNC	ENSG00000071794				48	0	0	52	36	40.9091
CP	0	genome.wustl.edu	37	3	148917637	148917637	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	148917637	148917637	C	T	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	missense	c.1363	p.A455T	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457				98	0	0	150	12	7.40741
C3orf33	0	genome.wustl.edu	37	3	155485298	155485298	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	155485298	155485298	C	T	SNP	C3orf33	ENST00000340171	human	ensembl	74_37	-1	known	silent	c.483	p.K161	0.998	superfamily_Staphylococal_nuclease_OB-fold	superfamily_Staphylococal_nuclease_OB-fold	-	no_errors	C3orf33	HGNC	ENSG00000174928				25	0	0	26	3	10.3448
MYNN	0	genome.wustl.edu	37	3	169496663	169496663	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	169496663	169496663	C	A	SNP	MYNN	ENST00000349841	human	ensembl	74_37	+1	known	missense	c.374	p.S125Y	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274				112	0	0	123	16	11.5108
GPR160	0	genome.wustl.edu	37	3	169802121	169802121	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	169802121	169802121	T	A	SNP	GPR160	ENST00000355897	human	ensembl	74_37	+1	known	missense	c.361	p.C121S	0.829	pfscan_GPCR_Rhodpsn_7TM	pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR160	HGNC	ENSG00000173890				50	0	0	44	6	12
GPR160	0	genome.wustl.edu	37	3	169802572	169802572	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	169802572	169802572	C	A	SNP	GPR160	ENST00000355897	human	ensembl	74_37	+1	known	missense	c.812	p.A271E	0.860	pfscan_GPCR_Rhodpsn_7TM	pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR160	HGNC	ENSG00000173890				150	0	0	103	19	15.5738
EFHB	0	genome.wustl.edu	37	3	19974904	19974904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	19974904	19974904	C	T	SNP	EFHB	ENST00000295824	human	ensembl	74_37	-1	known	missense	c.607	p.D203N	0.000	NULL	pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFHB	HGNC	ENSG00000163576				135	0	0	78	29	27.1028
WDR6	0	genome.wustl.edu	37	3	49050374	49050374	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	49050374	49050374	C	T	SNP	WDR6	ENST00000395474	human	ensembl	74_37	+1	known	silent	c.1497	p.A499	0.000	superfamily_Quino_amine_DH_bsu	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252				70	0	0	47	16	25.3968
QARS	0	genome.wustl.edu	37	3	49138789	49138789	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	49138789	49138789	T	G	SNP	QARS	ENST00000306125	human	ensembl	74_37	-1	known	missense	c.875	p.K292T	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,prints_Glu/Gln-tRNA-synth,tigrfam_Gln-tRNA-synth	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth,tigrfam_Gln-tRNA-synth	-	no_errors	QARS	HGNC	ENSG00000172053				91	0	0	63	25	28.4091
TCTA	0	genome.wustl.edu	37	3	49450044	49450044	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	49450044	49450044	A	C	SNP	TCTA	ENST00000273590	human	ensembl	74_37	+1	known	missense	c.185	p.N62T	1.000	pirsf_TCTA	pirsf_TCTA	-	no_errors	TCTA	HGNC	ENSG00000145022				221	0	0	306	132	30.137
BSN	0	genome.wustl.edu	37	3	49680221	49680221	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	49680221	49680221	A	C	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.1154	p.K385T	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				116	0	0	171	22	11.399
GNAI2	0	genome.wustl.edu	37	3	50289850	50289850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	50289850	50289850	C	T	SNP	GNAI2	ENST00000446079	human	ensembl	74_37	+1	known	missense	c.259	p.L87F	1.000	NULL	NULL	-	no_errors	GNAI2	HGNC	ENSG00000114353				112	0	0	59	45	43.2692
MTMR14	0	genome.wustl.edu	37	3	9711163	9711163	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	9711163	9711163	G	C	SNP	MTMR14	ENST00000296003	human	ensembl	74_37	+1	known	missense	c.541	p.D181H	1.000	NULL	NULL	-	no_errors	MTMR14	HGNC	ENSG00000163719				98	0	0	83	13	13.5417
JAGN1	0	genome.wustl.edu	37	3	9934635	9934635	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	9934635	9934635	C	G	SNP	JAGN1	ENST00000307768	human	ensembl	74_37	+1	known	nonsense	c.126	p.Y42*	1.000	pfam_Jagunal	pfam_Jagunal	-	no_errors	JAGN1	HGNC	ENSG00000171135				85	0	0	64	23	26.4368
ADH1A	0	genome.wustl.edu	37	4	100205900	100205900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	4	100205900	100205900	G	A	SNP	ADH1A	ENST00000209668	human	ensembl	74_37	-1	known	missense	c.320	p.P107L	0.994	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH1A	HGNC	ENSG00000187758				98	0	0	53	9	14.5161
CENPE	0	genome.wustl.edu	37	4	104065688	104065688	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	4	104065688	104065688	A	T	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.4945	p.L1649M	0.009	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				86	0	0	34	11	24.4444
ANK2	0	genome.wustl.edu	37	4	114161712	114161712	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	4	114161712	114161712	G	A	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	silent	c.765	p.R255	0.985	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				146	0	0	107	22	17.0543
SYNPO2	0	genome.wustl.edu	37	4	119947892	119947892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	4	119947892	119947892	C	T	SNP	SYNPO2	ENST00000307142	human	ensembl	74_37	+1	known	missense	c.368	p.A123V	0.701	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403				140	0	0	56	51	47.6636
PCDH10	0	genome.wustl.edu	37	4	134072302	134072302	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	4	134072302	134072302	A	T	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.1007	p.N336I	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				222	0	0	157	34	17.801
ADAM29	0	genome.wustl.edu	37	4	175897095	175897095	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	4	175897095	175897095	C	T	SNP	ADAM29	ENST00000359240	human	ensembl	74_37	+1	known	missense	c.419	p.A140V	0.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594				145	0	0	28	29	50.8772
PDE6B	0	genome.wustl.edu	37	4	654272	654272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	4	654272	654272	G	A	SNP	PDE6B	ENST00000496514	human	ensembl	74_37	+1	known	missense	c.1484	p.G495E	0.491	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256				74	0	0	34	27	44.2623
AFF1	0	genome.wustl.edu	37	4	88055782	88055782	+	Silent	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	4	88055782	88055782	A	G	SNP	AFF1	ENST00000395146	human	ensembl	74_37	+1	known	silent	c.3471	p.T1157	0.907	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493				290	0	0	240	71	22.8296
IBSP	0	genome.wustl.edu	37	4	88731868	88731868	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	4	88731868	88731868	G	A	SNP	IBSP	ENST00000226284	human	ensembl	74_37	+1	known	silent	c.357	p.T119	0.001	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559				202	0	0	129	39	23.2143
GRID2	0	genome.wustl.edu	37	4	94006175	94006175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	4	94006175	94006175	G	A	SNP	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	missense	c.274	p.A92T	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208				88	0	0	76	4	5
DCP2	0	genome.wustl.edu	37	5	112327904	112327904	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	112327904	112327904	C	A	SNP	DCP2	ENST00000389063	human	ensembl	74_37	+1	known	missense	c.292	p.P98T	1.000	superfamily_NUDIX_hydrolase_dom-like	pfam_mRNA_decapping_BoxA,pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	DCP2	HGNC	ENSG00000172795				197	0	0	56	42	42.8571
FEM1C	0	genome.wustl.edu	37	5	114878977	114878977	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	114878977	114878977	C	A	SNP	FEM1C	ENST00000274457	human	ensembl	74_37	-1	known	missense	c.214	p.G72C	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1C	HGNC	ENSG00000145780				61	0	0	55	11	16.6667
DNAH5	0	genome.wustl.edu	37	5	13735305	13735305	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	13735305	13735305	A	C	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.11696	p.L3899R	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				115	0	0	123	16	11.5108
PCDHA3	0	genome.wustl.edu	37	5	140182103	140182103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	140182103	140182103	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.1321	p.V441M	0.956	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				276	0	0	245	71	22.4684
PCDHB1	0	genome.wustl.edu	37	5	140432258	140432258	+	Silent	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	140432258	140432258	T	G	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	silent	c.1203	p.S401	0.129	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				156	0	0	103	28	21.374
PCDHGB6	0	genome.wustl.edu	37	5	140788957	140788957	+	Silent	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	140788957	140788957	T	G	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	silent	c.1188	p.S396	0.576	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				82	0	0	64	22	25.5814
PCDHGA12	0	genome.wustl.edu	37	5	140812194	140812194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	140812194	140812194	C	T	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.1868	p.T623M	0.840	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				170	0	0	109	78	41.7112
TRIO	0	genome.wustl.edu	37	5	14359545	14359545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	14359545	14359545	G	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.2296	p.E766K	1.000	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				124	0	0	214	23	9.70464
TENM2	0	genome.wustl.edu	37	5	167645910	167645910	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	167645910	167645910	A	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	missense	c.5014	p.T1672S	0.994	superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				258	0	0	227	28	10.9804
SDHA	0	genome.wustl.edu	37	5	218486	218486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	218486	218486	G	A	SNP	SDHA	ENST00000264932	human	ensembl	74_37	+1	known	missense	c.16	p.G6S	0.000	NULL	pfam_FAD_bind_dom,pfam_Fum_Rdtase/Succ_DH_flav-like_C,superfamily_Succ_DH/fumarate_Rdtase_cat,superfamily_Fum_Rdtase/Succ_DH_flav-like_C,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	-	no_errors	SDHA	HGNC	ENSG00000073578				41	0	0	42	8	16
IRX2	0	genome.wustl.edu	37	5	2748519	2748519	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	2748519	2748519	C	T	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	missense	c.1303	p.G435S	0.376	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				18	0	0	2	3	60
UGT3A1	0	genome.wustl.edu	37	5	35957327	35957327	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	35957327	35957327	C	T	SNP	UGT3A1	ENST00000274278	human	ensembl	74_37	-1	known	silent	c.1038	p.V346	0.995	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A1	HGNC	ENSG00000145626				80	0	0	82	8	8.88889
PAIP1	0	genome.wustl.edu	37	5	43535034	43535034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	43535034	43535034	C	T	SNP	PAIP1	ENST00000306846	human	ensembl	74_37	-1	known	missense	c.1118	p.R373Q	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Ataxin-2_C,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	PAIP1	HGNC	ENSG00000172239				121	0	0	109	13	10.6557
DDX4	0	genome.wustl.edu	37	5	55083777	55083777	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	55083777	55083777	C	A	SNP	DDX4	ENST00000505374	human	ensembl	74_37	+1	known	missense	c.1121	p.T374N	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX4	HGNC	ENSG00000152670				117	0	0	46	4	8
GPR98	0	genome.wustl.edu	37	5	89981640	89981640	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	5	89981640	89981640	G	A	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	silent	c.6318	p.A2106	0.815	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				71	0	0	15	8	34.7826
MAK	0	genome.wustl.edu	37	6	10775584	10775584	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	6	10775584	10775584	A	G	SNP	MAK	ENST00000313243	human	ensembl	74_37	-1	known	missense	c.1574	p.L525P	0.136	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAK	HGNC	ENSG00000111837				397	0	0	210	67	24.1877
TPD52L1	0	genome.wustl.edu	37	6	125584086	125584086	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	6	125584086	125584086	A	C	SNP	TPD52L1	ENST00000534000	human	ensembl	74_37	+1	known	missense	c.593	p.K198T	0.021	NULL	pfam_TPD52	-	no_errors	TPD52L1	HGNC	ENSG00000111907				59	0	0	49	4	7.54717
HIVEP2	0	genome.wustl.edu	37	6	143095786	143095786	+	Silent	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	6	143095786	143095786	T	C	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	silent	c.90	p.Q30	0.977	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				321	0	0	171	99	36.6667
SLC17A4	0	genome.wustl.edu	37	6	25777168	25777168	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	6	25777168	25777168	T	G	SNP	SLC17A4	ENST00000377905	human	ensembl	74_37	+1	known	missense	c.1249	p.F417V	0.992	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A4	HGNC	ENSG00000146039				158	0	0	107	26	19.5489
HIST1H4G	0	genome.wustl.edu	37	6	26247001	26247001	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	6	26247001	26247001	A	G	SNP	HIST1H4G	ENST00000244537	human	ensembl	74_37	-1	known	missense	c.205	p.Y69H	0.998	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,prints_Histone_H4	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,prints_Histone_H4	-	no_errors	HIST1H4G	HGNC	ENSG00000124578				85	0	0	50	18	26.4706
ZNF184	0	genome.wustl.edu	37	6	27419677	27419677	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	6	27419677	27419677	C	T	SNP	ZNF184	ENST00000211936	human	ensembl	74_37	-1	known	missense	c.1661	p.G554E	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF184	HGNC	ENSG00000096654				97	0	0	48	7	12.7273
OR5V1	0	genome.wustl.edu	37	6	29323204	29323204	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	6	29323204	29323204	A	C	SNP	OR5V1	ENST00000377154	human	ensembl	74_37	-1	known	missense	c.769	p.F257V	0.005	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5V1	HGNC	ENSG00000243729				178	0	0	92	32	25.8065
PKHD1	0	genome.wustl.edu	37	6	51524277	51524277	+	Silent	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	6	51524277	51524277	T	C	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	silent	c.10647	p.G3549	0.998	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				98	0	0	43	14	24.5614
DST	0	genome.wustl.edu	37	6	56362252	56362252	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	6	56362252	56362252	C	T	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.20055	p.T6685	0.049	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				83	0	0	32	32	50
BAI3	0	genome.wustl.edu	37	6	70064133	70064133	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	6	70064133	70064133	T	A	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.3468	p.D1156E	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				188	0	0	113	9	7.37705
RIMS1	0	genome.wustl.edu	37	6	73108716	73108716	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	6	73108716	73108716	A	G	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.4780	p.R1594G	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				104	0	0	43	23	34.8485
MUC17	0	genome.wustl.edu	37	7	100682331	100682331	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	7	100682331	100682331	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.7634	p.P2545L	0.005	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				695	0	0	306	268	46.6899
ORAI2	0	genome.wustl.edu	37	7	102079535	102079535	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	7	102079535	102079535	G	A	SNP	ORAI2	ENST00000356387	human	ensembl	74_37	+1	known	silent	c.132	p.S44	0.000	pfam_CRAC_channel	pfam_CRAC_channel	-	no_errors	ORAI2	HGNC	ENSG00000160991				170	0	0	128	32	20
SRPK2	0	genome.wustl.edu	37	7	104782887	104782887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	7	104782887	104782887	C	T	SNP	SRPK2	ENST00000393651	human	ensembl	74_37	-1	known	missense	c.1111	p.E371K	0.999	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250				142	0	0	76	17	18.2796
PNPLA8	0	genome.wustl.edu	37	7	108119793	108119793	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	7	108119793	108119793	C	T	SNP	PNPLA8	ENST00000257694	human	ensembl	74_37	-1	known	missense	c.1909	p.A637T	1.000	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_ARM-type_fold	-	no_errors	PNPLA8	HGNC	ENSG00000135241				106	0	0	25	30	54.5455
NME8	0	genome.wustl.edu	37	7	37890031	37890031	+	Silent	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	7	37890031	37890031	T	C	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	silent	c.85	p.L29	0.887	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288				203	0	0	108	46	29.8701
INHBA	0	genome.wustl.edu	37	7	41729891	41729891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	7	41729891	41729891	G	A	SNP	INHBA	ENST00000242208	human	ensembl	74_37	-1	known	missense	c.638	p.A213V	0.997	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641				79	0	0	30	40	57.1429
GTF2IRD1	0	genome.wustl.edu	37	7	73927245	73927245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	7	73927245	73927245	G	A	SNP	GTF2IRD1	ENST00000265755	human	ensembl	74_37	+1	known	missense	c.209	p.G70E	0.999	pirsf_TF_II-I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704				113	0	0	130	29	18.239
CDK14	0	genome.wustl.edu	37	7	90613530	90613530	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	7	90613530	90613530	C	G	SNP	CDK14	ENST00000380050	human	ensembl	74_37	+1	known	missense	c.1015	p.Q339E	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK14	HGNC	ENSG00000058091				168	1	0.591716	55	13	19.1176
PON3	0	genome.wustl.edu	37	7	94989405	94989405	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	7	94989405	94989405	C	T	SNP	PON3	ENST00000427422	human	ensembl	74_37	-1	putative	missense	c.734	p.G245E	0.004	NULL	pfam_Arylesterase,prints_Arylesterase	-	no_errors	PON3	HGNC	ENSG00000105852				156	0	0	82	27	24.7706
TRRAP	0	genome.wustl.edu	37	7	98491433	98491433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	7	98491433	98491433	G	A	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.379	p.E127K	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				107	0	0	50	6	10.7143
RIMS2	0	genome.wustl.edu	37	8	104934010	104934010	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	8	104934010	104934010	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.2194	p.S732A	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				80	0	0	30	10	25
CSGALNACT1	0	genome.wustl.edu	37	8	19362710	19362710	+	Splice_Site	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	8	19362710	19362710	A	G	SNP	CSGALNACT1	ENST00000311540	human	ensembl	74_37	-1	known	splice_site	c.634+2	e1+2	0.997	-	-	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				122	0	0	46	29	38.6667
CHRNA2	0	genome.wustl.edu	37	8	27319266	27319266	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	8	27319266	27319266	C	T	SNP	CHRNA2	ENST00000407991	human	ensembl	74_37	-1	known	silent	c.1470	p.K490	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA2	HGNC	ENSG00000120903				240	0	0	170	52	23.4234
TEX15	0	genome.wustl.edu	37	8	30700514	30700514	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	8	30700514	30700514	A	G	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.6020	p.L2007P	0.885	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				70	0	0	20	12	37.5
UNC5D	0	genome.wustl.edu	37	8	35631942	35631942	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	8	35631942	35631942	C	T	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	silent	c.2604	p.P868	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				99	0	0	50	11	18.0328
PRKDC	0	genome.wustl.edu	37	8	48815352	48815352	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	8	48815352	48815352	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.3046	p.G1016R	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				61	0	0	12	10	45.4545
AGPAT5	0	genome.wustl.edu	37	8	6599219	6599219	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	8	6599219	6599219	A	G	SNP	AGPAT5	ENST00000285518	human	ensembl	74_37	+1	known	missense	c.533	p.N178S	1.000	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT5	HGNC	ENSG00000155189				231	0	0	89	33	27.0492
OR13C4	0	genome.wustl.edu	37	9	107288534	107288534	+	Silent	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	9	107288534	107288534	T	C	SNP	OR13C4	ENST00000277216	human	ensembl	74_37	-1	known	silent	c.957	p.*319	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C4	HGNC	ENSG00000148136				154	0	0	64	53	45.2991
COL5A1	0	genome.wustl.edu	37	9	137687112	137687112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	9	137687112	137687112	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.2750	p.P917L	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				182	0	0	108	49	31.2102
COL5A1	0	genome.wustl.edu	37	9	137704501	137704501	+	Silent	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	9	137704501	137704501	T	G	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	silent	c.3795	p.A1265	0.944	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				21	0	0	18	7	28
FCN2	0	genome.wustl.edu	37	9	137775149	137775149	+	Silent	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	9	137775149	137775149	A	G	SNP	FCN2	ENST00000291744	human	ensembl	74_37	+1	known	silent	c.216	p.G72	0.607	pfam_Collagen	pfam_Fibrinogen_a/b/g_C_dom,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FCN2	HGNC	ENSG00000160339				113	0	0	60	28	31.8182
EXD3	0	genome.wustl.edu	37	9	140242576	140242576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	9	140242576	140242576	C	T	SNP	EXD3	ENST00000340951	human	ensembl	74_37	-1	known	missense	c.1945	p.G649S	0.974	pfam_Mut7-C_RNAse_dom	pfam_Mut7-C_RNAse_dom,pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD3	HGNC	ENSG00000187609				57	0	0	41	22	34.9206
FREM1	0	genome.wustl.edu	37	9	14747262	14747262	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	9	14747262	14747262	C	A	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.6012	p.Q2004H	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				268	0	0	105	43	29.0541
SLC24A2	0	genome.wustl.edu	37	9	19786705	19786705	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	9	19786705	19786705	A	C	SNP	SLC24A2	ENST00000341998	human	ensembl	74_37	-1	known	missense	c.160	p.F54V	0.919	NULL	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A2	HGNC	ENSG00000155886				172	0	0	97	7	6.73077
AQP7	0	genome.wustl.edu	37	9	33386446	33386446	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	9	33386446	33386446	A	G	SNP	AQP7	ENST00000297988	human	ensembl	74_37	-1	known	missense	c.362	p.L121P	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_MIP	-	no_errors	AQP7	HGNC	ENSG00000165269				36	0	0	19	6	24
C9orf131	0	genome.wustl.edu	37	9	35043516	35043516	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	9	35043516	35043516	G	C	SNP	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	missense	c.890	p.G297A	0.000	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				250	0	0	109	59	35.119
GDA	0	genome.wustl.edu	37	9	74840638	74840638	+	Silent	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	9	74840638	74840638	T	C	SNP	GDA	ENST00000238018	human	ensembl	74_37	+1	known	silent	c.760	p.L254	0.008	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	-	no_errors	GDA	HGNC	ENSG00000119125				216	0	0	467	32	6.41283
TSC22D3	0	genome.wustl.edu	37	X	106957906	106957906	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	X	106957906	106957906	A	T	SNP	TSC22D3	ENST00000315660	human	ensembl	74_37	-1	known	missense	c.446	p.L149Q	1.000	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC	ENSG00000157514				393	0	0	78	162	67.5
RAB9A	0	genome.wustl.edu	37	X	13726919	13726919	+	Silent	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	X	13726919	13726919	T	G	SNP	RAB9A	ENST00000464506	human	ensembl	74_37	+1	known	silent	c.54	p.V18	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB9A	HGNC	ENSG00000123595				256	0	0	115	36	23.8411
GPR50	0	genome.wustl.edu	37	X	150349066	150349066	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	X	150349066	150349066	C	T	SNP	GPR50	ENST00000218316	human	ensembl	74_37	+1	known	silent	c.1011	p.R337	0.026	prints_Mel_rcpt_1X	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mel_rcpt_1X,prints_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195				296	0	0	71	121	63.0208
ARSD	0	genome.wustl.edu	37	X	2825510	2825510	+	Silent	SNP	G	G	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	X	2825510	2825510	G	T	SNP	ARSD	ENST00000381154	human	ensembl	74_37	-1	known	silent	c.1584	p.P528	0.326	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSD	HGNC	ENSG00000006756				38	0	0	11	25	69.4444
IL1RAPL1	0	genome.wustl.edu	37	X	29414374	29414374	+	Splice_Site	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	X	29414374	29414374	G	A	SNP	IL1RAPL1	ENST00000302196	human	ensembl	74_37	+1	known	splice_site	c.363-1	e3-1	1.000	-	-	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306				56	0	0	20	5	20
TAB3	0	genome.wustl.edu	37	X	30870904	30870904	+	Silent	SNP	C	C	T			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	X	30870904	30870904	C	T	SNP	TAB3	ENST00000288422	human	ensembl	74_37	-1	known	silent	c.1701	p.A567	0.001	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625				106	0	0	25	37	59.6774
WDR45	0	genome.wustl.edu	37	X	48934166	48934166	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	X	48934166	48934166	T	C	SNP	WDR45	ENST00000322995	human	ensembl	74_37	-1	known	missense	c.359	p.K120R	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR45	HGNC	ENSG00000196998				274	0	0	124	50	28.7356
CCNB3	0	genome.wustl.edu	37	X	50090653	50090653	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	X	50090653	50090653	C	A	SNP	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	missense	c.3839	p.T1280N	1.000	pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				114	0	0	60	20	25
P2RY10	0	genome.wustl.edu	37	X	78216599	78216599	+	Silent	SNP	G	G	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	X	78216599	78216599	G	A	SNP	P2RY10	ENST00000171757	human	ensembl	74_37	+1	known	silent	c.582	p.A194	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	P2RY10	HGNC	ENSG00000078589				118	0	0	19	37	66.0714
NAP1L3	0	genome.wustl.edu	37	X	92927241	92927241	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	X	92927241	92927241	T	G	SNP	NAP1L3	ENST00000373079	human	ensembl	74_37	-1	known	missense	c.1063	p.S355R	0.271	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310				124	0	0	30	27	47.3684
MUC5B	0	genome.wustl.edu	37	11	1265770	1265771	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	11	1265770	1265771	-	A	INS	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	frame_shift_ins	c.7669_7670	p.T2558fs	0.041:0.030	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				630	0	0	572	64	10.0629
MED1	0	genome.wustl.edu	37	17	37564657	37564659	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	37564657	37564659	AGG	-	DEL	MED1	ENST00000300651	human	ensembl	74_37	-1	known	in_frame_del	c.3817_3815	p.S1272in_frame_del	1.000:1.000:1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				150	0	0	151	33	17.9348
MED1	0	genome.wustl.edu	37	17	37565976	37565976	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	37565976	37565976	T	-	DEL	MED1	ENST00000300651	human	ensembl	74_37	-1	known	frame_shift_del	c.2498	p.N833fs	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				135	0	0	135	47	25.8242
TP53	0	genome.wustl.edu	37	17	7578275	7578277	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	17	7578275	7578277	GAG	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	in_frame_del	c.574_572	p.P191in_frame_del	0.998:0.977:0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				100	0	0	30	28	48.2759
GMPPB	0	genome.wustl.edu	37	3	49759702	49759719	+	In_Frame_Del	DEL	GCCGCTCAGGCTGCTTCT	GCCGCTCAGGCTGCTTCT	-			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	GCCGCTCAGGCTGCTTCT	GCCGCTCAGGCTGCTTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	3	49759702	49759719	GCCGCTCAGGCTGCTTCT	-	DEL	GMPPB	ENST00000308375	human	ensembl	74_37	-1	known	in_frame_del	c.730_713	p.QKQPER238in_frame_del	0.980:0.939:0.956:0.964:0.997:1.000:1.000:0.994:1.000:1.000:0.852:0.999:1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_NTP_transferase,pfam_Hexapep_transf	-	no_errors	GMPPB	HGNC	ENSG00000173540				154	0	0	227	37	14.0152
PODXL	0	genome.wustl.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-			TCGA-BR-8060-01A-11D-2340-08	TCGA-BR-8060-10A-01D-2340-08	GGCGAC	GGCGAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	193578c4-5619-42bf-834d-a73723a5e7f3	6d72fc1f-d9ec-4c34-9357-a9f71f33b834	7	131241030	131241035	GGCGAC	-	DEL	PODXL	ENST00000541194	human	ensembl	74_37	-1	known	in_frame_del	c.89_84	p.PS30in_frame_del	0.003:0.005:0.005:0.006:0.006:0.006	pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567				9	0	0	8	3	27.2727
