Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AHCYL1	0	genome.wustl.edu	37	1	110561048	110561048	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	110561048	110561048	A	C	SNP	AHCYL1	ENST00000369799	human	ensembl	74_37	+1	known	missense	c.1177	p.I393L	1.000	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL1	HGNC	ENSG00000168710				88	0	0	19	3	13.6364
POGZ	0	genome.wustl.edu	37	1	151413529	151413529	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	151413529	151413529	A	T	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.158	p.V53E	1.000	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				74	0	0	36	14	28
POU2F1	0	genome.wustl.edu	37	1	167385178	167385178	+	RNA	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	167385178	167385178	G	A	SNP	POU2F1	ENST00000367865	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.479	-	-	-	no_errors	POU2F1	HGNC	ENSG00000143190				20	0	0	5	4	44.4444
ATP1B1	0	genome.wustl.edu	37	1	169099314	169099314	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	169099314	169099314	C	A	SNP	ATP1B1	ENST00000367815	human	ensembl	74_37	+1	known	missense	c.634	p.Q212K	1.000	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	-	no_errors	ATP1B1	HGNC	ENSG00000143153				106	0	0	36	11	23.4043
CACNA1E	0	genome.wustl.edu	37	1	181546939	181546939	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	181546939	181546939	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.550	p.V184M	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				24	0	0	19	3	13.6364
SLC26A9	0	genome.wustl.edu	37	1	205901913	205901913	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	205901913	205901913	A	T	SNP	SLC26A9	ENST00000340781	human	ensembl	74_37	-1	known	missense	c.293	p.L98H	1.000	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502				98	0	0	54	4	6.89655
TRAF3IP3	0	genome.wustl.edu	37	1	209933473	209933473	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	209933473	209933473	G	A	SNP	TRAF3IP3	ENST00000367024	human	ensembl	74_37	+1	known	missense	c.89	p.R30H	0.989	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790				58	0	0	42	3	6.66667
SLC30A10	0	genome.wustl.edu	37	1	220091652	220091652	+	Silent	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	220091652	220091652	C	T	SNP	SLC30A10	ENST00000366926	human	ensembl	74_37	-1	known	silent	c.903	p.E301	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660				251	0	0	78	7	8.23529
HSPG2	0	genome.wustl.edu	37	1	22199882	22199882	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	22199882	22199882	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3779	p.G1260A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				293	0	0	124	65	34.3915
OBSCN	0	genome.wustl.edu	37	1	228434292	228434292	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	228434292	228434292	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3821	p.A1274G	0.014	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				169	0	0	60	50	45.4545
ARID4B	0	genome.wustl.edu	37	1	235377337	235377337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	235377337	235377337	C	T	SNP	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	missense	c.1588	p.E530K	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				75	0	0	23	10	30.303
ZNF496	0	genome.wustl.edu	37	1	247473461	247473461	+	RNA	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	247473461	247473461	G	A	SNP	ZNF496	ENST00000462139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF496	HGNC	ENSG00000162714				11	0	0	2	4	66.6667
ZSCAN20	0	genome.wustl.edu	37	1	33945121	33945121	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	33945121	33945121	C	T	SNP	ZSCAN20	ENST00000361328	human	ensembl	74_37	+1	known	missense	c.232	p.R78C	0.997	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903				82	0	0	38	6	13.6364
GRIK3	0	genome.wustl.edu	37	1	37319269	37319269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	37319269	37319269	G	A	SNP	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	missense	c.1159	p.R387W	0.999	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873				128	0	0	41	19	31.6667
MACF1	0	genome.wustl.edu	37	1	39776014	39776014	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	39776014	39776014	T	G	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.3029	p.F1010C	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				104	0	0	45	18	28.5714
RPS8	0	genome.wustl.edu	37	1	45244200	45244200	+	RNA	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	45244200	45244200	G	C	SNP	RPS8	ENST00000484599	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPS8	HGNC	ENSG00000142937				111	0	0	34	10	22.7273
GTF2B	0	genome.wustl.edu	37	1	89329732	89329732	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	89329732	89329732	G	C	SNP	GTF2B	ENST00000370500	human	ensembl	74_37	-1	known	missense	c.190	p.P64A	1.000	prints_TFIIB	pfam_TFIIB_cyclin,pfam_Znf_TFIIB,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	GTF2B	HGNC	ENSG00000137947				142	0	0	38	13	25.4902
EBF3	0	genome.wustl.edu	37	10	131665478	131665478	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	10	131665478	131665478	G	A	SNP	EBF3	ENST00000355311	human	ensembl	74_37	-1	known	silent	c.966	p.G322	0.988	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF3	HGNC	ENSG00000108001				91	0	0	21	21	50
TRDMT1	0	genome.wustl.edu	37	10	17216575	17216575	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	10	17216575	17216575	G	T	SNP	TRDMT1	ENST00000377799	human	ensembl	74_37	-1	known	missense	c.149	p.T50K	0.996	pfam_C5_MeTfrase,tigrfam_C5_MeTfrase	pfam_C5_MeTfrase,prints_C5_MeTfrase,tigrfam_C5_MeTfrase	-	no_errors	TRDMT1	HGNC	ENSG00000107614				136	0	0	36	7	16.2791
CCAR1	0	genome.wustl.edu	37	10	70496773	70496773	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	10	70496773	70496773	C	A	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	missense	c.214	p.Q72K	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				68	0	0	33	11	25
CCAR1	0	genome.wustl.edu	37	10	70549535	70549535	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	10	70549535	70549535	G	C	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	missense	c.3256	p.V1086L	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				74	0	0	12	2	14.2857
AIFM2	0	genome.wustl.edu	37	10	71874730	71874730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	10	71874730	71874730	C	T	SNP	AIFM2	ENST00000307864	human	ensembl	74_37	-1	known	missense	c.916	p.V306M	0.997	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2,prints_Rng_hydrolase-like	-	no_errors	AIFM2	HGNC	ENSG00000042286				57	0	0	23	16	41.0256
KIAA1377	0	genome.wustl.edu	37	11	101849101	101849101	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	101849101	101849101	C	T	SNP	KIAA1377	ENST00000263468	human	ensembl	74_37	+1	known	nonsense	c.2869	p.R957*	0.323	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318				389	0	0	81	7	7.95455
CASP4	0	genome.wustl.edu	37	11	104819260	104819260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	104819260	104819260	G	A	SNP	CASP4	ENST00000444739	human	ensembl	74_37	-1	known	missense	c.925	p.H309Y	1.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_p10	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP4	HGNC	ENSG00000196954				71	0	0	30	6	16.6667
TMPRSS13	0	genome.wustl.edu	37	11	117780642	117780642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	117780642	117780642	C	T	SNP	TMPRSS13	ENST00000445164	human	ensembl	74_37	-1	known	missense	c.988	p.A330T	0.666	pirsf_Peptidase_S1A_TMPRSS13,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Peptidase_S1A_TMPRSS13,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SRCR,pfscan_Peptidase_S1	-	no_errors	TMPRSS13	HGNC	ENSG00000137747				85	0	0	48	14	22.5806
C11orf63	0	genome.wustl.edu	37	11	122817220	122817220	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	122817220	122817220	C	G	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	missense	c.1649	p.S550C	0.016	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				69	0	0	46	3	6.12245
TMEM45B	0	genome.wustl.edu	37	11	129725628	129725628	+	Silent	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	129725628	129725628	C	T	SNP	TMEM45B	ENST00000281441	human	ensembl	74_37	+1	known	silent	c.411	p.H137	0.000	pfam_DUF716_TMEM45	pfam_DUF716_TMEM45	-	no_errors	TMEM45B	HGNC	ENSG00000151715				229	0	0	135	35	20.5882
KIAA1549L	0	genome.wustl.edu	37	11	33564658	33564658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	33564658	33564658	C	T	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	missense	c.658	p.P220S	0.000	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427				209	0	0	94	5	5.05051
GLYAT	0	genome.wustl.edu	37	11	58477426	58477426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	58477426	58477426	G	A	SNP	GLYAT	ENST00000344743	human	ensembl	74_37	-1	known	missense	c.704	p.P235L	0.586	pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYAT	HGNC	ENSG00000149124				91	0	0	52	11	17.4603
PHRF1	0	genome.wustl.edu	37	11	601629	601629	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	601629	601629	A	T	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.1080	p.K360N	0.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				99	0	0	35	10	22.2222
MARK2	0	genome.wustl.edu	37	11	63666571	63666571	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	63666571	63666571	A	C	SNP	MARK2	ENST00000402010	human	ensembl	74_37	+1	known	missense	c.522	p.R174S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518				214	0	0	105	24	18.6047
EFEMP2	0	genome.wustl.edu	37	11	65635413	65635413	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	65635413	65635413	G	C	SNP	EFEMP2	ENST00000307998	human	ensembl	74_37	-1	known	missense	c.1089	p.I363M	0.997	NULL	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	EFEMP2	HGNC	ENSG00000172638				179	0	0	97	15	13.3929
EFEMP2	0	genome.wustl.edu	37	11	65635426	65635426	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	65635426	65635426	T	C	SNP	EFEMP2	ENST00000307998	human	ensembl	74_37	-1	known	missense	c.1076	p.D359G	1.000	NULL	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	EFEMP2	HGNC	ENSG00000172638				169	1	0.588235	99	14	12.3894
CD248	0	genome.wustl.edu	37	11	66083782	66083782	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	66083782	66083782	G	A	SNP	CD248	ENST00000311330	human	ensembl	74_37	-1	known	silent	c.717	p.N239	0.960	smart_EG-like_dom	pfam_C-type_lectin,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807				58	0	0	33	4	10.8108
PC	0	genome.wustl.edu	37	11	66639309	66639309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	66639309	66639309	G	A	SNP	PC	ENST00000393958	human	ensembl	74_37	-1	known	missense	c.170	p.T57M	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_dom,pirsf_Pyruv_COase,pfscan_Biotin_carboxylation_dom,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599				26	0	0	17	8	32
KCNE3	0	genome.wustl.edu	37	11	74168442	74168442	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	74168442	74168442	T	A	SNP	KCNE3	ENST00000310128	human	ensembl	74_37	-1	known	missense	c.167	p.N56I	1.000	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE3	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE3,prints_K_chnl_volt-dep_bsu_KCNE	-	no_errors	KCNE3	HGNC	ENSG00000175538				78	0	0	71	10	12.3457
TALDO1	0	genome.wustl.edu	37	11	760142	760142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	760142	760142	C	T	SNP	TALDO1	ENST00000319006	human	ensembl	74_37	+1	known	missense	c.350	p.A117V	0.025	pfam_Transaldolase,tigrfam_Transaldolase_1	pfam_Transaldolase,tigrfam_Transaldolase_1	-	no_errors	TALDO1	HGNC	ENSG00000177156				123	1	0.806452	41	5	10.8696
PCF11	0	genome.wustl.edu	37	11	82879823	82879823	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	11	82879823	82879823	G	T	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	missense	c.2446	p.G816W	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				78	0	0	38	3	7.31707
MYBPC1	0	genome.wustl.edu	37	12	102010978	102010978	+	Splice_Site	SNP	A	A	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	12	102010978	102010978	A	C	SNP	MYBPC1	ENST00000361466	human	ensembl	74_37	+1	known	splice_site	c.62-2	e3-2	1.000	-	-	-	no_errors	MYBPC1	HGNC	ENSG00000196091				67	0	0	14	6	30
CERS5	0	genome.wustl.edu	37	12	50561072	50561072	+	Silent	SNP	T	T	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	12	50561072	50561072	T	A	SNP	CERS5	ENST00000317551	human	ensembl	74_37	-1	known	silent	c.9	p.T3	0.957	NULL	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS5	HGNC	ENSG00000139624				44	0	0	54	3	5.26316
OR6C75	0	genome.wustl.edu	37	12	55759444	55759444	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	12	55759444	55759444	C	A	SNP	OR6C75	ENST00000343399	human	ensembl	74_37	+1	known	missense	c.550	p.Q184K	0.947	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C75	HGNC	ENSG00000187857				125	1	0.793651	37	35	48.6111
CNOT2	0	genome.wustl.edu	37	12	70704765	70704765	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	12	70704765	70704765	T	C	SNP	CNOT2	ENST00000229195	human	ensembl	74_37	+1	known	missense	c.139	p.S47P	1.000	NULL	pfam_NOT	-	no_errors	CNOT2	HGNC	ENSG00000111596				128	0	0	98	8	7.54717
COMMD6	0	genome.wustl.edu	37	13	76111694	76111694	+	RNA	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	13	76111694	76111694	G	C	SNP	COMMD6	ENST00000471682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COMMD6	HGNC	ENSG00000188243				22	0	0	6	19	76
IPO5	0	genome.wustl.edu	37	13	98652834	98652834	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	13	98652834	98652834	G	T	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.1097	p.C366F	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				136	0	0	47	43	47.7778
MIR323B	0	genome.wustl.edu	37	14	101522590	101522590	+	RNA	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	14	101522590	101522590	G	A	SNP	MIR323B	ENST00000385269	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.157	-	-	-	no_errors	MIR323B	HGNC	ENSG00000208004				52	0	0	21	4	16
AHNAK2	0	genome.wustl.edu	37	14	105417279	105417279	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	14	105417279	105417279	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.4509	p.F1503	0.021	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				164	0	0	111	8	6.72269
HAUS4	0	genome.wustl.edu	37	14	23415837	23415837	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	14	23415837	23415837	A	G	SNP	HAUS4	ENST00000206474	human	ensembl	74_37	-1	known	missense	c.989	p.L330P	0.849	NULL	NULL	-	no_errors	HAUS4	HGNC	ENSG00000092036				63	0	0	30	6	16.6667
ACIN1	0	genome.wustl.edu	37	14	23532239	23532239	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	14	23532239	23532239	T	G	SNP	ACIN1	ENST00000262710	human	ensembl	74_37	-1	known	missense	c.2956	p.K986Q	1.000	NULL	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	ACIN1	HGNC	ENSG00000100813				238	0	0	72	51	41.4634
AKAP6	0	genome.wustl.edu	37	14	33290766	33290766	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	14	33290766	33290766	G	A	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	silent	c.3747	p.L1249	0.994	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				112	0	0	25	7	21.875
SGPP1	0	genome.wustl.edu	37	14	64194098	64194098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	14	64194098	64194098	G	A	SNP	SGPP1	ENST00000247225	human	ensembl	74_37	-1	known	missense	c.565	p.P189S	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	SGPP1	HGNC	ENSG00000126821				155	0	0	50	83	62.406
SYNE2	0	genome.wustl.edu	37	14	64628976	64628976	+	Silent	SNP	A	A	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	14	64628976	64628976	A	C	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	silent	c.16281	p.P5427	0.003	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				139	0	0	94	30	24.1935
KCNK13	0	genome.wustl.edu	37	14	90651236	90651236	+	Silent	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	14	90651236	90651236	C	T	SNP	KCNK13	ENST00000282146	human	ensembl	74_37	+1	known	silent	c.1116	p.N372	0.658	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK13	HGNC	ENSG00000152315				93	0	0	27	14	34.1463
FBLN5	0	genome.wustl.edu	37	14	92343836	92343836	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	14	92343836	92343836	T	C	SNP	FBLN5	ENST00000342058	human	ensembl	74_37	-1	known	missense	c.1180	p.M394V	1.000	NULL	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	FBLN5	HGNC	ENSG00000140092				145	0	0	34	34	50
SERPINA5	0	genome.wustl.edu	37	14	95056501	95056501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	14	95056501	95056501	G	A	SNP	SERPINA5	ENST00000329597	human	ensembl	74_37	+1	known	missense	c.743	p.R248Q	0.001	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488				73	0	0	42	7	14.2857
MKRN3	0	genome.wustl.edu	37	15	23811198	23811198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	23811198	23811198	G	A	SNP	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	missense	c.269	p.R90Q	0.002	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455				86	0	0	34	19	35.8491
MKRN3	0	genome.wustl.edu	37	15	23811962	23811962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	23811962	23811962	C	T	SNP	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	missense	c.1033	p.R345C	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455				158	0	0	43	23	34.8485
SNHG14	0	genome.wustl.edu	37	15	25304861	25304861	+	RNA	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	25304861	25304861	C	T	SNP	SNHG14	ENST00000549804	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				96	0	0	23	28	54.902
GJD2	0	genome.wustl.edu	37	15	35045438	35045438	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	35045438	35045438	G	A	SNP	GJD2	ENST00000290374	human	ensembl	74_37	-1	known	silent	c.207	p.R69	0.998	pfam_Connexin_N,smart_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin36	-	no_errors	GJD2	HGNC	ENSG00000159248				128	0	0	46	17	26.9841
CASC5	0	genome.wustl.edu	37	15	40947114	40947114	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	40947114	40947114	C	A	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	missense	c.6501	p.F2167L	0.557	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				148	0	0	25	7	21.875
DNAJC17	0	genome.wustl.edu	37	15	41067260	41067260	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	41067260	41067260	G	C	SNP	DNAJC17	ENST00000220496	human	ensembl	74_37	-1	known	missense	c.569	p.S190C	1.000	pfam_RRM_dom	pfam_DnaJ_domain,pfam_RRM_dom,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC17	HGNC	ENSG00000104129				98	0	0	24	3	11.1111
DMXL2	0	genome.wustl.edu	37	15	51766637	51766637	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	51766637	51766637	C	A	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.7117	p.A2373S	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				105	0	0	13	20	60.6061
ETFA	0	genome.wustl.edu	37	15	76578041	76578041	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	76578041	76578041	C	A	SNP	ETFA	ENST00000557943	human	ensembl	74_37	-1	known	missense	c.601	p.D201Y	1.000	smart_ETF_a/b_N,pirsf_ETF_a	pfam_ETF_asu_C,pfam_ETF_a/b_N,smart_ETF_a/b_N,pirsf_ETF_a	-	no_errors	ETFA	HGNC	ENSG00000140374				149	0	0	26	9	25.7143
KIAA1199	0	genome.wustl.edu	37	15	81230194	81230194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	81230194	81230194	C	T	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.3281	p.S1094L	1.000	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				138	0	0	59	34	36.5591
IQGAP1	0	genome.wustl.edu	37	15	91037964	91037964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	91037964	91037964	G	A	SNP	IQGAP1	ENST00000268182	human	ensembl	74_37	+1	known	missense	c.4648	p.E1550K	0.990	pfam_RasGAP_C	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_WW_dom,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575				166	0	0	60	10	14.2857
ST8SIA2	0	genome.wustl.edu	37	15	93007503	93007503	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	93007503	93007503	A	G	SNP	ST8SIA2	ENST00000268164	human	ensembl	74_37	+1	known	missense	c.1016	p.Y339C	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA2	HGNC	ENSG00000140557				149	0	0	190	28	12.844
ABCC6	0	genome.wustl.edu	37	16	16255324	16255324	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	16	16255324	16255324	C	G	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	missense	c.3604	p.V1202L	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				62	0	0	23	6	20.6897
ABCC6	0	genome.wustl.edu	37	16	16255325	16255325	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	16	16255325	16255325	G	A	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	silent	c.3603	p.L1201	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				63	0	0	24	6	20
RBBP6	0	genome.wustl.edu	37	16	24581590	24581590	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	16	24581590	24581590	G	A	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	silent	c.3579	p.R1193	0.997	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				214	0	0	33	5	13.1579
CHST5	0	genome.wustl.edu	37	16	75564225	75564225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	16	75564225	75564225	C	T	SNP	CHST5	ENST00000541075	human	ensembl	74_37	-1	known	missense	c.76	p.A26T	0.107	pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702				19	0	0	2	3	60
MSLNL	0	genome.wustl.edu	37	16	820288	820288	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	16	820288	820288	G	A	SNP	MSLNL	ENST00000293892	human	ensembl	74_37	-1	known	silent	c.2697	p.S899	0.591	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLNL	HGNC	ENSG00000162006				23	0	0	11	6	35.2941
KLHL36	0	genome.wustl.edu	37	16	84693458	84693458	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	16	84693458	84693458	G	A	SNP	KLHL36	ENST00000564996	human	ensembl	74_37	+1	known	silent	c.1230	p.A410	0.036	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686				127	0	0	39	38	49.3506
IGF2BP1	0	genome.wustl.edu	37	17	47076502	47076502	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	17	47076502	47076502	G	C	SNP	IGF2BP1	ENST00000290341	human	ensembl	74_37	+1	known	missense	c.207	p.E69D	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP1	HGNC	ENSG00000159217				101	0	0	23	3	11.5385
SPATA20	0	genome.wustl.edu	37	17	48628511	48628511	+	Silent	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	17	48628511	48628511	C	A	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	silent	c.1536	p.P512	0.001	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				52	0	0	9	11	55
RNFT1	0	genome.wustl.edu	37	17	58040311	58040311	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	17	58040311	58040311	C	T	SNP	RNFT1	ENST00000305783	human	ensembl	74_37	-1	known	missense	c.391	p.A131T	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNFT1	HGNC	ENSG00000189050				158	0	0	47	17	26.5625
KIF19	0	genome.wustl.edu	37	17	72350362	72350362	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	17	72350362	72350362	G	A	SNP	KIF19	ENST00000389916	human	ensembl	74_37	+1	known	silent	c.2370	p.S790	0.225	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169				119	0	0	42	6	12.5
TP53	0	genome.wustl.edu	37	17	7577094	7577094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	17	7577094	7577094	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.844	p.R282W	0.997	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				63	0	0	12	23	65.7143
AATK	0	genome.wustl.edu	37	17	79095615	79095615	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	17	79095615	79095615	G	A	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	silent	c.2121	p.G707	0.012	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409				16	0	0	9	3	25
ATP9B	0	genome.wustl.edu	37	18	77096644	77096644	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	18	77096644	77096644	G	C	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	missense	c.2045	p.R682P	0.832	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				59	0	0	14	8	36.3636
PPAN-P2RY11	0	genome.wustl.edu	37	19	10224526	10224526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	10224526	10224526	C	T	SNP	PPAN-P2RY11	ENST00000428358	human	ensembl	74_37	+1	novel	missense	c.1559	p.P520L	0.749	NULL	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207				57	0	0	21	4	16
CD97	0	genome.wustl.edu	37	19	14517256	14517256	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	14517256	14517256	C	G	SNP	CD97	ENST00000242786	human	ensembl	74_37	+1	known	missense	c.1935	p.F645L	0.996	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_CD97	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146				12	0	0	6	4	40
ILVBL	0	genome.wustl.edu	37	19	15226970	15226970	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	15226970	15226970	G	A	SNP	ILVBL	ENST00000263383	human	ensembl	74_37	-1	known	silent	c.1464	p.L488	0.002	pfam_TPP_enzyme-bd_C	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_TPP_enzyme-bd_C,pfam_Thiamin_PyroP_enz_cen_dom	-	no_errors	ILVBL	HGNC	ENSG00000105135				103	0	0	50	7	12.2807
NWD1	0	genome.wustl.edu	37	19	16860087	16860087	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	16860087	16860087	G	C	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.634	p.A212P	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				159	1	0.625	45	34	43.038
ENSG00000269025	0	genome.wustl.edu	37	19	22790781	22790781	+	RNA	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	22790781	22790781	C	T	SNP	ENSG00000269025	ENST00000598658	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.122	-	-	-	no_errors	CTC-457E21.5	Clone_based_vega_gene	ENSG00000269025				76	0	0	30	19	38.7755
ZNF536	0	genome.wustl.edu	37	19	30935864	30935864	+	Silent	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	30935864	30935864	G	C	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	silent	c.1395	p.A465	0.151	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				123	0	0	90	8	8.16327
CYP2F1	0	genome.wustl.edu	37	19	41627980	41627980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	41627980	41627980	C	T	SNP	CYP2F1	ENST00000331105	human	ensembl	74_37	+1	known	missense	c.764	p.S255L	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_CYP2_fam,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2F1	HGNC	ENSG00000197446				94	0	0	44	29	39.726
CIC	0	genome.wustl.edu	37	19	42795827	42795827	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	42795827	42795827	G	C	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.2816	p.G939A	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				198	0	0	100	47	31.9728
GPR32	0	genome.wustl.edu	37	19	51273919	51273919	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	51273919	51273919	G	A	SNP	GPR32	ENST00000270590	human	ensembl	74_37	+1	known	missense	c.62	p.R21H	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	GPR32	HGNC	ENSG00000142511				53	0	0	10	7	41.1765
VN1R2	0	genome.wustl.edu	37	19	53762763	53762763	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	53762763	53762763	A	C	SNP	VN1R2	ENST00000341702	human	ensembl	74_37	+1	known	missense	c.1135	p.S379R	0.000	NULL	pfam_Vmron_rcpt_1,pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_Vmron_rcpt_1	-	no_errors	VN1R2	HGNC	ENSG00000196131				205	0	0	42	17	28.8136
TNNT1	0	genome.wustl.edu	37	19	55645256	55645256	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	55645256	55645256	A	C	SNP	TNNT1	ENST00000588981	human	ensembl	74_37	-1	known	missense	c.790	p.F264V	1.000	NULL	pfam_Troponin	-	no_errors	TNNT1	HGNC	ENSG00000105048				123	0	0	26	8	23.5294
PEG3	0	genome.wustl.edu	37	19	57326272	57326272	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	57326272	57326272	C	T	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.3538	p.E1180K	0.775	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				260	0	0	30	38	55.8824
ZSCAN18	0	genome.wustl.edu	37	19	58600105	58600105	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	58600105	58600105	C	G	SNP	ZSCAN18	ENST00000600404	human	ensembl	74_37	-1	known	missense	c.671	p.S224T	0.023	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN18	HGNC	ENSG00000121413				86	0	0	14	12	46.1538
CAPS	0	genome.wustl.edu	37	19	5914470	5914470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	19	5914470	5914470	G	A	SNP	CAPS	ENST00000222125	human	ensembl	74_37	+1	known	missense	c.53	p.R18H	0.375	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CAPS	HGNC	ENSG00000105519				114	0	0	43	5	10.4167
NEB	0	genome.wustl.edu	37	2	152483704	152483704	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	152483704	152483704	C	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.10159	p.D3387H	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				122	0	0	12	29	70.7317
LRP2	0	genome.wustl.edu	37	2	170072858	170072858	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	170072858	170072858	T	C	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.5731	p.K1911E	0.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				125	0	0	25	20	44.4444
TTN	0	genome.wustl.edu	37	2	179419223	179419223	+	Silent	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	179419223	179419223	G	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.81147	p.G27049	0.244	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				54	0	0	12	10	45.4545
MYO1B	0	genome.wustl.edu	37	2	192246260	192246260	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	192246260	192246260	C	A	SNP	MYO1B	ENST00000304164	human	ensembl	74_37	+1	known	missense	c.1258	p.L420I	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1B	HGNC	ENSG00000128641				111	0	0	18	7	28
DNAH7	0	genome.wustl.edu	37	2	196729342	196729342	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	196729342	196729342	C	G	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.7037	p.G2346A	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				124	0	0	62	6	8.82353
CCNYL1	0	genome.wustl.edu	37	2	208611776	208611776	+	Silent	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	208611776	208611776	C	T	SNP	CCNYL1	ENST00000295414	human	ensembl	74_37	+1	known	silent	c.645	p.Y215	1.000	pfam_Cyclin_N,pfam_Cyclin_PHO80-like,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_Y	pfam_Cyclin_N,pfam_Cyclin_PHO80-like,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_Y	-	no_errors	CCNYL1	HGNC	ENSG00000163249				128	0	0	36	13	26.5306
BIRC6	0	genome.wustl.edu	37	2	32740755	32740755	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	32740755	32740755	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.11267	p.R3756H	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				93	0	0	48	3	5.88235
PNPT1	0	genome.wustl.edu	37	2	55874501	55874501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	55874501	55874501	C	T	SNP	PNPT1	ENST00000415374	human	ensembl	74_37	-1	known	missense	c.1583	p.R528H	1.000	pfam_ExoRNase_PH_dom2,superfamily_ExoRNase_PH_dom2,pirsf_PNPase,tigrfam_PNPase	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,pfam_PNPase_PH_RNA-bd_bac/org-type,pfam_KH_dom_type_1,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2,superfamily_PNPase_PH_RNA-bd_bac/org-type,superfamily_NA-bd_OB-fold,smart_KH_dom,smart_RNA-binding_domain_S1,pirsf_PNPase,pfscan_KH_dom_type_1,pfscan_Rbsml_prot_S1_RNA-bd_dom,tigrfam_PNPase	-	no_errors	PNPT1	HGNC	ENSG00000138035				168	0	0	47	6	11.3208
RETSAT	0	genome.wustl.edu	37	2	85571127	85571127	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	85571127	85571127	C	A	SNP	RETSAT	ENST00000295802	human	ensembl	74_37	-1	known	missense	c.1528	p.G510W	1.000	NULL	pfam_Amino_oxidase,pfam_FAD_bind_dom,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_mOase_FAD-bd	-	no_errors	RETSAT	HGNC	ENSG00000042445				226	0	0	101	59	36.875
ANKRD36BP2	0	genome.wustl.edu	37	2	89084389	89084389	+	RNA	SNP	G	G	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	89084389	89084389	G	T	SNP	ANKRD36BP2	ENST00000393515	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	ANKRD36BP2	HGNC	ENSG00000230006				8	0	0	3	2	40
SIRPD	0	genome.wustl.edu	37	20	1517875	1517875	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	20	1517875	1517875	G	A	SNP	SIRPD	ENST00000381623	human	ensembl	74_37	-1	known	missense	c.503	p.S168L	0.002	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SIRPD	HGNC	ENSG00000125900				151	0	0	231	14	5.71429
PTPN1	0	genome.wustl.edu	37	20	49197803	49197803	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	20	49197803	49197803	A	G	SNP	PTPN1	ENST00000371621	human	ensembl	74_37	+1	known	missense	c.1090	p.M364V	0.981	pirsf_Ptpn1/Ptpn2	pirsf_Ptpn1/Ptpn2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN1	HGNC	ENSG00000196396				83	0	0	92	5	5.15464
DIDO1	0	genome.wustl.edu	37	20	61542508	61542508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	20	61542508	61542508	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.457	p.D153N	0.923	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				111	0	0	41	40	49.3827
KCNQ2	0	genome.wustl.edu	37	20	62046361	62046361	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	20	62046361	62046361	C	G	SNP	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	missense	c.1336	p.E446Q	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043				85	0	0	65	10	13.3333
NCAM2	0	genome.wustl.edu	37	21	22656515	22656515	+	Silent	SNP	G	G	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	21	22656515	22656515	G	T	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	silent	c.132	p.A44	0.974	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_Neural_cell_adh	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				116	0	0	18	11	37.931
ENSG00000161103	0	genome.wustl.edu	37	22	18844888	18844888	+	RNA	SNP	A	A	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	22	18844888	18844888	A	G	SNP	ENSG00000161103	ENST00000412938	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC008132.13	Clone_based_vega_gene	ENSG00000161103				73	0	0	57	12	17.3913
CSF2RB	0	genome.wustl.edu	37	22	37328890	37328890	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	22	37328890	37328890	G	A	SNP	CSF2RB	ENST00000262825	human	ensembl	74_37	+1	known	missense	c.1114	p.E372K	0.000	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368				71	0	0	20	7	25.9259
KCNJ4	0	genome.wustl.edu	37	22	38823136	38823136	+	Silent	SNP	T	T	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	22	38823136	38823136	T	C	SNP	KCNJ4	ENST00000303592	human	ensembl	74_37	-1	known	silent	c.1002	p.S334	0.090	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.3	-	no_errors	KCNJ4	HGNC	ENSG00000168135				66	0	0	31	4	11.4286
ADSL	0	genome.wustl.edu	37	22	40754925	40754925	+	Silent	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	22	40754925	40754925	C	T	SNP	ADSL	ENST00000454266	human	ensembl	74_37	+1	known	silent	c.582	p.C194	1.000	pfam_Fumarate_lyase_N,superfamily_L-Aspartase-like,tigrfam_Pur_lyase	pfam_Fumarate_lyase_N,pfam_AdenyloSucc_lyase_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Pur_lyase	-	no_errors	ADSL	HGNC	ENSG00000239900				130	0	0	29	29	50
PLXNB2	0	genome.wustl.edu	37	22	50717049	50717049	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	22	50717049	50717049	G	A	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	silent	c.4623	p.R1541	0.984	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				39	0	0	15	11	42.3077
FAM86HP	0	genome.wustl.edu	37	3	129821679	129821679	+	RNA	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	3	129821679	129821679	G	A	SNP	FAM86HP	ENST00000511564	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.107	-	-	-	no_errors	FAM86HP	HGNC	ENSG00000253540				159	0	0	54	5	8.47458
TSC22D2	0	genome.wustl.edu	37	3	150127812	150127812	+	Silent	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	3	150127812	150127812	G	C	SNP	TSC22D2	ENST00000361875	human	ensembl	74_37	+1	known	silent	c.675	p.V225	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D2	HGNC	ENSG00000196428				161	0	0	67	6	8.21918
GMPS	0	genome.wustl.edu	37	3	155649637	155649637	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	3	155649637	155649637	G	C	SNP	GMPS	ENST00000496455	human	ensembl	74_37	+1	known	missense	c.1644	p.R548S	1.000	pfam_GMP_synth_C	pfam_GATASE,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655				294	0	0	48	24	33.3333
LINC00969	0	genome.wustl.edu	37	3	195404649	195404649	+	RNA	SNP	A	A	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	3	195404649	195404649	A	G	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				52	0	0	37	3	7.5
LIMD1	0	genome.wustl.edu	37	3	45677682	45677682	+	Silent	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	3	45677682	45677682	C	G	SNP	LIMD1	ENST00000273317	human	ensembl	74_37	+1	known	silent	c.1449	p.G483	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMD1	HGNC	ENSG00000144791				479	0	0	193	36	15.7205
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				251	0	0	62	33	34.7368
CRIPAK	0	genome.wustl.edu	37	4	1388392	1388392	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	4	1388392	1388392	G	A	SNP	CRIPAK	ENST00000324803	human	ensembl	74_37	+1	known	silent	c.93	p.E31	0.327	NULL	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979				561	0	0	463	46	9.03733
PI4K2B	0	genome.wustl.edu	37	4	25256828	25256828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	4	25256828	25256828	G	A	SNP	PI4K2B	ENST00000264864	human	ensembl	74_37	+1	known	missense	c.565	p.E189K	1.000	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2B	HGNC	ENSG00000038210				113	0	0	15	35	70
FER	0	genome.wustl.edu	37	5	108134020	108134020	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	5	108134020	108134020	T	A	SNP	FER	ENST00000281092	human	ensembl	74_37	+1	known	nonsense	c.137	p.L46*	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FER	HGNC	ENSG00000151422				118	0	0	21	4	16
BRD8	0	genome.wustl.edu	37	5	137503737	137503737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	5	137503737	137503737	C	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.673	p.G225C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				205	0	0	53	30	36.1446
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				205	0	0	51	47	47.9592
PCDHA11	0	genome.wustl.edu	37	5	140250469	140250469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	5	140250469	140250469	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.1781	p.R594H	0.390	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				244	0	0	119	18	13.1387
AGXT2	0	genome.wustl.edu	37	5	35035360	35035360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	5	35035360	35035360	G	A	SNP	AGXT2	ENST00000231420	human	ensembl	74_37	-1	known	missense	c.548	p.A183V	0.898	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AGXT2	HGNC	ENSG00000113492				193	0	0	81	108	57.1429
SPEF2	0	genome.wustl.edu	37	5	35806993	35806993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	5	35806993	35806993	G	A	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	missense	c.5195	p.S1732N	0.010	pfam_HATC_dom_C	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				115	0	0	47	7	12.963
UGT3A2	0	genome.wustl.edu	37	5	36037997	36037997	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	5	36037997	36037997	G	A	SNP	UGT3A2	ENST00000282507	human	ensembl	74_37	-1	known	silent	c.1197	p.V399	0.003	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A2	HGNC	ENSG00000168671				226	0	0	189	12	5.97015
CDC20B	0	genome.wustl.edu	37	5	54415675	54415675	+	Silent	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	5	54415675	54415675	C	A	SNP	CDC20B	ENST00000296733	human	ensembl	74_37	-1	known	silent	c.1413	p.V471	0.036	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC20B	HGNC	ENSG00000164287				178	0	0	63	13	17.1053
ZNF366	0	genome.wustl.edu	37	5	71757315	71757315	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	5	71757315	71757315	C	G	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	missense	c.9	p.K3N	0.303	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				126	0	0	33	22	40
GPR98	0	genome.wustl.edu	37	5	90024493	90024493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	5	90024493	90024493	G	A	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.10169	p.R3390K	0.533	pfscan_EAR	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				308	0	0	65	26	28.5714
RGMB	0	genome.wustl.edu	37	5	98115642	98115642	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	5	98115642	98115642	G	T	SNP	RGMB	ENST00000308234	human	ensembl	74_37	+1	known	missense	c.618	p.L206F	1.000	pfam_RGM_N	pfam_RGM_C,pfam_RGM_N	-	no_errors	RGMB	HGNC	ENSG00000174136				61	0	0	15	7	31.8182
REV3L	0	genome.wustl.edu	37	6	111631175	111631175	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	6	111631175	111631175	C	A	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.8923	p.D2975Y	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				158	0	0	46	5	9.80392
NCOA7	0	genome.wustl.edu	37	6	126176272	126176272	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	6	126176272	126176272	G	C	SNP	NCOA7	ENST00000368357	human	ensembl	74_37	+1	known	missense	c.157	p.D53H	1.000	NULL	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912				444	0	0	35	28	44.4444
DNAH8	0	genome.wustl.edu	37	6	38840773	38840773	+	Silent	SNP	G	G	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	6	38840773	38840773	G	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.6678	p.T2226	0.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				160	0	0	76	4	5
CDYL	0	genome.wustl.edu	37	6	4937947	4937947	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	6	4937947	4937947	G	T	SNP	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	missense	c.1259	p.S420I	1.000	pfam_Crotonase_core_superfam	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046				129	0	0	28	13	31.7073
SNAP91	0	genome.wustl.edu	37	6	84371281	84371281	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	6	84371281	84371281	A	C	SNP	SNAP91	ENST00000369694	human	ensembl	74_37	-1	known	missense	c.392	p.L131W	1.000	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609				90	0	0	8	4	33.3333
DUS4L	0	genome.wustl.edu	37	7	107214184	107214184	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	7	107214184	107214184	G	A	SNP	DUS4L	ENST00000265720	human	ensembl	74_37	+1	known	missense	c.274	p.D92N	1.000	pfam_tRNA_hU_synthase,pirsf_tRNA_hU_synthase	pfam_tRNA_hU_synthase,pfam_OxRdtase_FMN_N,pirsf_tRNA_hU_synthase	-	no_errors	DUS4L	HGNC	ENSG00000105865				381	1	0.26178	75	25	25
MKLN1	0	genome.wustl.edu	37	7	131128350	131128350	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	7	131128350	131128350	G	T	SNP	MKLN1	ENST00000352689	human	ensembl	74_37	+1	known	missense	c.1284	p.L428F	0.879	NULL	pfam_Muskelin_N,pfam_Kelch_1,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_LisH_dimerisation,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MKLN1	HGNC	ENSG00000128585				132	1	0.75188	48	18	27.2727
CLCN1	0	genome.wustl.edu	37	7	143027909	143027909	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	7	143027909	143027909	C	T	SNP	CLCN1	ENST00000343257	human	ensembl	74_37	+1	known	missense	c.898	p.R300W	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl_channel-1	-	no_errors	CLCN1	HGNC	ENSG00000188037				119	0	0	36	11	23.4043
KCNH2	0	genome.wustl.edu	37	7	150648871	150648871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	7	150648871	150648871	C	T	SNP	KCNH2	ENST00000262186	human	ensembl	74_37	-1	known	missense	c.1610	p.R537Q	0.995	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118				64	0	0	34	7	17.0732
GALNT11	0	genome.wustl.edu	37	7	151805280	151805280	+	Silent	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	7	151805280	151805280	C	T	SNP	GALNT11	ENST00000320311	human	ensembl	74_37	+1	known	silent	c.870	p.V290	0.429	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234				137	0	0	92	5	5.15464
KMT2C	0	genome.wustl.edu	37	7	151970951	151970951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	7	151970951	151970951	C	T	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.851	p.R284Q	1.000	smart_Znf_PHD	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				143	1	0.694444	77	9	10.4651
INMT	0	genome.wustl.edu	37	7	30795204	30795204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	7	30795204	30795204	C	T	SNP	INMT	ENST00000013222	human	ensembl	74_37	+1	known	missense	c.529	p.R177C	0.520	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	INMT	HGNC	ENSG00000241644				194	0	0	254	32	11.1888
GCK	0	genome.wustl.edu	37	7	44191983	44191983	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	7	44191983	44191983	A	C	SNP	GCK	ENST00000345378	human	ensembl	74_37	-1	known	missense	c.253	p.F85V	1.000	pfam_Hexokinase_N,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	GCK	HGNC	ENSG00000106633				218	0	0	160	15	8.57143
PON2	0	genome.wustl.edu	37	7	95035535	95035535	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	7	95035535	95035535	C	G	SNP	PON2	ENST00000536183	human	ensembl	74_37	-1	known	missense	c.865	p.D289H	1.000	pfam_SGL,prints_Arylesterase	pfam_Arylesterase,pfam_SGL,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON2	HGNC	ENSG00000105854				189	0	0	55	4	6.77966
ZFPM2	0	genome.wustl.edu	37	8	106815129	106815129	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	8	106815129	106815129	A	G	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	missense	c.2819	p.Q940R	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				44	0	0	26	4	13.3333
ZNF572	0	genome.wustl.edu	37	8	125990059	125990059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	8	125990059	125990059	C	T	SNP	ZNF572	ENST00000319286	human	ensembl	74_37	+1	known	missense	c.1549	p.P517S	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938				110	0	0	86	7	7.52688
DLC1	0	genome.wustl.edu	37	8	12957702	12957702	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	8	12957702	12957702	T	C	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.2144	p.E715G	1.000	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				91	0	0	45	11	19.6429
GPT	0	genome.wustl.edu	37	8	145731400	145731400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	8	145731400	145731400	C	T	SNP	GPT	ENST00000394955	human	ensembl	74_37	+1	known	missense	c.842	p.A281V	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GPT	HGNC	ENSG00000167701				56	0	0	55	19	25.6757
TUSC3	0	genome.wustl.edu	37	8	15397991	15397991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	8	15397991	15397991	C	T	SNP	TUSC3	ENST00000503731	human	ensembl	74_37	+1	known	missense	c.52	p.R18W	0.940	NULL	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723				47	0	0	8	12	60
UNC5D	0	genome.wustl.edu	37	8	35541183	35541183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	8	35541183	35541183	C	T	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.689	p.T230I	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				96	0	0	25	8	24.2424
MRPL15	0	genome.wustl.edu	37	8	55060008	55060008	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	8	55060008	55060008	C	T	SNP	MRPL15	ENST00000260102	human	ensembl	74_37	+1	known	missense	c.620	p.P207L	0.973	NULL	pfam_Ribosomal_L18e/L15P,superfamily_Ribosomal_L18e/L15P	-	no_errors	MRPL15	HGNC	ENSG00000137547				111	0	0	71	26	26.8041
CA3	0	genome.wustl.edu	37	8	86360349	86360349	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	8	86360349	86360349	C	G	SNP	CA3	ENST00000285381	human	ensembl	74_37	+1	known	missense	c.750	p.I250M	0.996	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA3	HGNC	ENSG00000164879				45	0	0	52	7	11.8644
NECAB1	0	genome.wustl.edu	37	8	91940518	91940518	+	Silent	SNP	G	G	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	8	91940518	91940518	G	T	SNP	NECAB1	ENST00000417640	human	ensembl	74_37	+1	known	silent	c.684	p.L228	1.000	NULL	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NECAB1	HGNC	ENSG00000123119				138	0	0	55	13	19.1176
SETX	0	genome.wustl.edu	37	9	135202659	135202659	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	9	135202659	135202659	A	C	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.4326	p.C1442W	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				222	0	0	90	6	6.25
SETX	0	genome.wustl.edu	37	9	135202660	135202660	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	9	135202660	135202660	C	T	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.4325	p.C1442Y	0.003	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				225	0	0	88	7	7.36842
FOXD4L5	0	genome.wustl.edu	37	9	70177544	70177544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	9	70177544	70177544	C	T	SNP	FOXD4L5	ENST00000377420	human	ensembl	74_37	-1	known	missense	c.440	p.R147H	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L5	HGNC	ENSG00000204779				44	0	0	41	13	24.0741
COL4A6	0	genome.wustl.edu	37	X	107412759	107412759	+	Silent	SNP	C	C	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	107412759	107412759	C	A	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	silent	c.3660	p.G1220	0.006	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565				105	0	0	71	38	34.8624
HTR2C	0	genome.wustl.edu	37	X	114141785	114141785	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	114141785	114141785	T	A	SNP	HTR2C	ENST00000276198	human	ensembl	74_37	+1	known	missense	c.1184	p.V395D	0.003	prints_5HT2C_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2C_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246				248	0	0	83	86	50.8876
DCAF12L2	0	genome.wustl.edu	37	X	125299259	125299259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	125299259	125299259	C	T	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	missense	c.649	p.V217M	0.217	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354				126	0	0	38	41	51.8987
MOSPD1	0	genome.wustl.edu	37	X	134025640	134025640	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	134025640	134025640	A	G	SNP	MOSPD1	ENST00000370777	human	ensembl	74_37	-1	known	missense	c.482	p.L161S	1.000	NULL	pfam_MSP_dom,superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	MOSPD1	HGNC	ENSG00000101928				176	0	0	57	26	31.3253
MAP7D3	0	genome.wustl.edu	37	X	135314089	135314089	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	135314089	135314089	C	T	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	missense	c.973	p.V325M	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				259	0	0	156	25	13.8122
MAGEA10	0	genome.wustl.edu	37	X	151303170	151303170	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	151303170	151303170	T	G	SNP	MAGEA10	ENST00000244096	human	ensembl	74_37	-1	known	missense	c.923	p.K308T	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA10	HGNC	ENSG00000124260				324	0	0	111	33	22.9167
SLC10A3	0	genome.wustl.edu	37	X	153716440	153716440	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	153716440	153716440	G	A	SNP	SLC10A3	ENST00000263512	human	ensembl	74_37	-1	known	silent	c.840	p.D280	0.341	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903				147	0	0	60	23	27.7108
USP11	0	genome.wustl.edu	37	X	47092439	47092439	+	Silent	SNP	G	G	A			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	47092439	47092439	G	A	SNP	USP11	ENST00000218348	human	ensembl	74_37	+1	known	silent	c.126	p.T42	0.001	NULL	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67	-	no_errors	USP11	HGNC	ENSG00000102226				60	0	0	14	18	56.25
AR	0	genome.wustl.edu	37	X	66765885	66765885	+	Silent	SNP	A	A	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	66765885	66765885	A	T	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	silent	c.897	p.A299	0.000	pfam_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				96	0	0	29	29	50
P2RY4	0	genome.wustl.edu	37	X	69478801	69478801	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	69478801	69478801	C	G	SNP	P2RY4	ENST00000374519	human	ensembl	74_37	-1	known	missense	c.674	p.R225P	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y4_rcpt,prints_GPCR_Rhodpsn,prints_P2Y2_rcpt	-	no_errors	P2RY4	HGNC	ENSG00000186912				82	0	0	32	19	37.2549
CYSLTR1	0	genome.wustl.edu	37	X	77529219	77529219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	77529219	77529219	C	T	SNP	CYSLTR1	ENST00000373304	human	ensembl	74_37	-1	known	missense	c.25	p.V9I	0.171	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	CYSLTR1	HGNC	ENSG00000173198				143	0	0	72	4	5.26316
PCDH11X	0	genome.wustl.edu	37	X	91131997	91131997	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	X	91131997	91131997	A	C	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.758	p.E253A	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				183	0	0	81	5	5.81395
BCAN	0	genome.wustl.edu	37	1	156616753	156616756	+	Frame_Shift_Del	DEL	GGGC	GGGC	-			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	GGGC	GGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	1	156616753	156616756	GGGC	-	DEL	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	frame_shift_del	c.252_255	p.E87fs	0.912:0.967:0.892:0.701	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				62	0	0	23	3	11.5385
A2ML1	0	genome.wustl.edu	37	12	9009920	9009920	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	12	9009920	9009920	G	-	DEL	A2ML1	ENST00000299698	human	ensembl	74_37	+1	known	frame_shift_del	c.3009	p.G1004fs	0.009	superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535				280	0	0	135	10	6.89655
TMEM121	0	genome.wustl.edu	37	14	105996050	105996052	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	14	105996050	105996052	GCC	-	DEL	TMEM121	ENST00000392519	human	ensembl	74_37	+1	known	in_frame_del	c.879_881	p.P297in_frame_del	0.404:0.938:0.989	NULL	NULL	-	no_errors	TMEM121	HGNC	ENSG00000184986				8	0	0	3	2	40
SNORD115-6	0	genome.wustl.edu	37	15	25425692	25425692	+	RNA	DEL	A	A	-			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	15	25425692	25425692	A	-	DEL	SNORD115-6	ENST00000363942	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.215	-	-	-	no_errors	SNORD115-6	HGNC	ENSG00000200812				844	0	0	298	31	9.42249
MYH10	0	genome.wustl.edu	37	17	8398465	8398466	+	In_Frame_Ins	INS	-	-	GTA			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	17	8398465	8398466	-	GTA	INS	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	in_frame_ins	c.4016_4015	p.1339in_frame_insL	1.000:1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				162	0	0	23	12	34.2857
SLC4A3	0	genome.wustl.edu	37	2	220494110	220494111	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	220494110	220494111	-	C	INS	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	frame_shift_ins	c.462_463	p.H156fs	0.015:0.049	prints_Anion_exchange_3	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				35	0	0	11	2	15.3846
SRBD1	0	genome.wustl.edu	37	2	45620206	45620207	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	2	45620206	45620207	-	T	INS	SRBD1	ENST00000263736	human	ensembl	74_37	-1	known	frame_shift_ins	c.2576_2575	p.I859fs	1.000:1.000	NULL	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784				119	0	0	30	24	44.4444
DYNC1LI1	0	genome.wustl.edu	37	3	32571050	32571050	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	3	32571050	32571050	T	-	DEL	DYNC1LI1	ENST00000273130	human	ensembl	74_37	-1	known	frame_shift_del	c.1288	p.I430fs	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	-	no_errors	DYNC1LI1	HGNC	ENSG00000144635				22	0	0	13	2	13.3333
HRCT1	0	genome.wustl.edu	37	9	35906348	35906350	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-BR-8077-01A-11D-2340-08	TCGA-BR-8077-10A-01D-2340-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	141af187-b767-4e25-8b46-dfa8618b1794	4ff305bd-6a6a-4583-a89c-ddab140a042d	9	35906348	35906350	CTG	-	DEL	HRCT1	ENST00000354323	human	ensembl	74_37	+1	known	in_frame_del	c.64_66	p.L25in_frame_del	0.168:0.493:0.516	NULL	NULL	-	no_errors	HRCT1	HGNC	ENSG00000196196				29	0	0	13	3	18.75
