Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SASS6	0	genome.wustl.edu	37	1	100551134	100551134	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	100551134	100551134	T	C	SNP	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	missense	c.1825	p.I609V	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				132	0	0	57	18	24
CDC14A	0	genome.wustl.edu	37	1	100964501	100964501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	100964501	100964501	C	T	SNP	CDC14A	ENST00000361544	human	ensembl	74_37	+1	known	missense	c.1438	p.R480W	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335				89	0	0	29	11	27.5
CDC14A	0	genome.wustl.edu	37	1	100964650	100964650	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	100964650	100964650	T	C	SNP	CDC14A	ENST00000361544	human	ensembl	74_37	+1	known	silent	c.1587	p.P529	0.997	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335				108	0	0	37	23	38.3333
AKNAD1	0	genome.wustl.edu	37	1	109358853	109358853	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	109358853	109358853	A	G	SNP	AKNAD1	ENST00000370001	human	ensembl	74_37	-1	known	silent	c.2451	p.I817	0.175	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641				192	0	0	93	40	30.0752
CELSR2	0	genome.wustl.edu	37	1	109795502	109795502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	109795502	109795502	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.2801	p.S934N	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				175	1	0.568182	89	9	9.18367
MYBPHL	0	genome.wustl.edu	37	1	109849545	109849545	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	109849545	109849545	C	T	SNP	MYBPHL	ENST00000357155	human	ensembl	74_37	-1	known	silent	c.69	p.A23	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPHL	HGNC	ENSG00000221986				87	0	0	30	18	37.5
ATXN7L2	0	genome.wustl.edu	37	1	110031548	110031548	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	110031548	110031548	A	G	SNP	ATXN7L2	ENST00000369870	human	ensembl	74_37	+1	known	missense	c.863	p.N288S	0.537	pfam_SCA7_dom	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650				81	0	0	36	13	26.5306
AHCYL1	0	genome.wustl.edu	37	1	110563414	110563414	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	110563414	110563414	T	C	SNP	AHCYL1	ENST00000369799	human	ensembl	74_37	+1	known	silent	c.1527	p.D509	1.000	pfam_Adenosylhomocysteinase,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL1	HGNC	ENSG00000168710				240	0	0	103	36	25.8993
KCNC4	0	genome.wustl.edu	37	1	110765721	110765721	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	110765721	110765721	C	T	SNP	KCNC4	ENST00000369787	human	ensembl	74_37	+1	known	missense	c.814	p.R272W	0.994	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_K_chnl_volt-dep_Kv3_ID,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.4,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC4	HGNC	ENSG00000116396				243	0	0	77	31	28.7037
CHIA	0	genome.wustl.edu	37	1	111854340	111854340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	111854340	111854340	G	A	SNP	CHIA	ENST00000343320	human	ensembl	74_37	+1	known	missense	c.55	p.G19S	1.000	NULL	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIA	HGNC	ENSG00000134216				264	0	0	97	35	26.5152
KCND3	0	genome.wustl.edu	37	1	112524322	112524322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	112524322	112524322	C	T	SNP	KCND3	ENST00000315987	human	ensembl	74_37	-1	known	missense	c.1027	p.E343K	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385				84	0	0	31	11	26.1905
MOV10	0	genome.wustl.edu	37	1	113232213	113232213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	113232213	113232213	G	A	SNP	MOV10	ENST00000357443	human	ensembl	74_37	+1	known	missense	c.518	p.R173Q	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	MOV10	HGNC	ENSG00000155363				229	0	0	83	26	23.8532
AP4B1	0	genome.wustl.edu	37	1	114439156	114439156	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	114439156	114439156	G	A	SNP	AP4B1	ENST00000462591	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AP4B1	HGNC	ENSG00000134262				72	0	0	34	13	27.6596
NGF	0	genome.wustl.edu	37	1	115829258	115829258	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	115829258	115829258	G	T	SNP	NGF	ENST00000369512	human	ensembl	74_37	-1	known	missense	c.159	p.S53R	0.258	pirsf_Nerve_growth_factor-like,prints_Nerve_growth_factor_bsu_mml	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Nerve_growth_factor_bsu_mml,prints_Nerve_growth_factor_bsu,pfscan_Nerve_growth_factor-rel	-	no_errors	NGF	HGNC	ENSG00000134259				79	0	0	41	16	28.0702
CD58	0	genome.wustl.edu	37	1	117078587	117078587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	117078587	117078587	C	T	SNP	CD58	ENST00000369489	human	ensembl	74_37	-1	known	missense	c.628	p.G210S	0.060	NULL	NULL	-	no_errors	CD58	HGNC	ENSG00000116815				135	0	0	59	29	32.9545
AGTRAP	0	genome.wustl.edu	37	1	11806017	11806017	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	11806017	11806017	C	T	SNP	AGTRAP	ENST00000491346	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AGTRAP	HGNC	ENSG00000177674				40	0	0	30	18	37.5
VPS13D	0	genome.wustl.edu	37	1	12353760	12353760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	12353760	12353760	C	T	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.6032	p.T2011M	1.000	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				45	0	0	16	3	15.7895
CPSF3L	0	genome.wustl.edu	37	1	1248005	1248005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	1248005	1248005	G	A	SNP	CPSF3L	ENST00000540437	human	ensembl	74_37	-1	known	missense	c.1388	p.S463L	0.995	NULL	pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3L	HGNC	ENSG00000127054				80	0	0	28	19	40.4255
GLTPD1	0	genome.wustl.edu	37	1	1262942	1262942	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	1262942	1262942	C	A	SNP	GLTPD1	ENST00000343938	human	ensembl	74_37	+1	known	silent	c.444	p.A148	0.290	pfam_Glycolipid_transfer_prot_dom,superfamily_Glycolipid_transfer_prot_dom	pfam_Glycolipid_transfer_prot_dom,superfamily_Glycolipid_transfer_prot_dom	-	no_errors	GLTPD1	HGNC	ENSG00000224051				16	0	0	13	3	18.75
HNRNPCL1	0	genome.wustl.edu	37	1	12908011	12908011	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	12908011	12908011	C	T	SNP	HNRNPCL1	ENST00000317869	human	ensembl	74_37	-1	known	silent	c.132	p.A44	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPCL1	HGNC	ENSG00000179172				319	0	0	147	16	9.81595
CCNL2	0	genome.wustl.edu	37	1	1326219	1326219	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	1326219	1326219	G	A	SNP	CCNL2	ENST00000400809	human	ensembl	74_37	-1	known	missense	c.686	p.T229I	1.000	pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978				139	0	0	43	15	25.8621
PRDM2	0	genome.wustl.edu	37	1	14108436	14108436	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	14108436	14108436	C	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	silent	c.4146	p.G1382	0.176	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				133	0	0	71	27	27.551
ADAMTSL4	0	genome.wustl.edu	37	1	150529726	150529726	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	150529726	150529726	G	A	SNP	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	silent	c.2031	p.P677	0.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				34	0	0	13	8	38.0952
SETDB1	0	genome.wustl.edu	37	1	150923259	150923259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	150923259	150923259	C	T	SNP	SETDB1	ENST00000271640	human	ensembl	74_37	+1	known	missense	c.1906	p.R636W	1.000	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379				143	0	0	58	18	23.6842
SETDB1	0	genome.wustl.edu	37	1	150931769	150931769	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	150931769	150931769	G	T	SNP	SETDB1	ENST00000271640	human	ensembl	74_37	+1	known	missense	c.2446	p.G816C	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379				178	0	0	69	34	33.0097
PI4KB	0	genome.wustl.edu	37	1	151280093	151280093	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	151280093	151280093	C	T	SNP	PI4KB	ENST00000271657	human	ensembl	74_37	-1	known	missense	c.1175	p.R392H	1.000	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393				81	0	0	23	11	32.3529
NBPF18P	0	genome.wustl.edu	37	1	151994945	151994945	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	151994945	151994945	G	A	SNP	NBPF18P	ENST00000432386	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NBPF18P	HGNC	ENSG00000229021				93	0	0	19	5	20.8333
TCHH	0	genome.wustl.edu	37	1	152083177	152083177	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	152083177	152083177	T	C	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.2516	p.Q839R	0.621	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				127	0	0	80	28	25.9259
HRNR	0	genome.wustl.edu	37	1	152186120	152186120	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	152186120	152186120	A	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.7985	p.L2662S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				47	0	0	21	3	12.5
HRNR	0	genome.wustl.edu	37	1	152190973	152190973	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	152190973	152190973	G	A	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.3132	p.S1044	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				406	1	0.2457	167	92	35.5212
SPRR3	0	genome.wustl.edu	37	1	152975733	152975733	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	152975733	152975733	G	A	SNP	SPRR3	ENST00000295367	human	ensembl	74_37	+1	known	silent	c.237	p.E79	0.965	pfam_Cornifin	pfam_Cornifin	-	no_errors	SPRR3	HGNC	ENSG00000163209				72	0	0	41	16	28.0702
HAX1	0	genome.wustl.edu	37	1	154247469	154247469	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	154247469	154247469	A	G	SNP	HAX1	ENST00000483970	human	ensembl	74_37	+1	known	missense	c.572	p.E191G	1.000	pirsf_HS1--assoc_X-1	pirsf_HS1--assoc_X-1	-	no_errors	HAX1	HGNC	ENSG00000143575				45	0	0	10	4	28.5714
ASH1L	0	genome.wustl.edu	37	1	155491087	155491087	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	155491087	155491087	A	G	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.224	p.V75A	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				366	0	0	180	75	29.4118
GON4L	0	genome.wustl.edu	37	1	155722995	155722995	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	155722995	155722995	C	A	SNP	GON4L	ENST00000271883	human	ensembl	74_37	-1	known	nonsense	c.5842	p.G1948*	0.997	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580				72	0	0	28	18	39.1304
NES	0	genome.wustl.edu	37	1	156645010	156645010	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	156645010	156645010	G	A	SNP	NES	ENST00000368223	human	ensembl	74_37	-1	known	silent	c.906	p.Y302	1.000	pfam_IF	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				102	0	0	46	14	23.3333
FCRL4	0	genome.wustl.edu	37	1	157557085	157557085	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	157557085	157557085	C	T	SNP	FCRL4	ENST00000271532	human	ensembl	74_37	-1	known	silent	c.828	p.S276	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL4	HGNC	ENSG00000163518				319	1	0.3125	150	62	29.2453
OR10R2	0	genome.wustl.edu	37	1	158450149	158450149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	158450149	158450149	G	A	SNP	OR10R2	ENST00000368152	human	ensembl	74_37	+1	known	missense	c.482	p.C161Y	0.976	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10R2	HGNC	ENSG00000198965				198	1	0.502513	131	61	31.7708
OR6K3	0	genome.wustl.edu	37	1	158687866	158687866	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	158687866	158687866	A	T	SNP	OR6K3	ENST00000368146	human	ensembl	74_37	-1	known	missense	c.88	p.F30I	0.381	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757				132	0	0	43	24	35.8209
PYHIN1	0	genome.wustl.edu	37	1	158914700	158914700	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	158914700	158914700	C	T	SNP	PYHIN1	ENST00000368140	human	ensembl	74_37	+1	known	silent	c.1227	p.S409	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564				93	0	0	39	15	27.7778
CADM3	0	genome.wustl.edu	37	1	159163282	159163282	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	159163282	159163282	A	G	SNP	CADM3	ENST00000368124	human	ensembl	74_37	+1	known	missense	c.554	p.N185S	0.626	pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM3	HGNC	ENSG00000162706				114	0	0	46	8	14.8148
DCAF8	0	genome.wustl.edu	37	1	160209863	160209863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	160209863	160209863	C	T	SNP	DCAF8	ENST00000608310	human	ensembl	74_37	-1	known	missense	c.809	p.R270H	0.975	NULL	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716				67	0	0	35	9	20.4545
PLEKHM2	0	genome.wustl.edu	37	1	16060293	16060293	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	16060293	16060293	T	C	SNP	PLEKHM2	ENST00000375799	human	ensembl	74_37	+1	known	missense	c.2924	p.V975A	1.000	NULL	pfam_Run,pfam_Pleckstrin_homology,smart_Run,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Run	-	no_errors	PLEKHM2	HGNC	ENSG00000116786				148	0	0	45	12	21.0526
ARHGAP30	0	genome.wustl.edu	37	1	161018410	161018410	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	161018410	161018410	C	A	SNP	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	nonsense	c.2401	p.G801*	0.001	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				323	0	0	128	51	28.4916
PPOX	0	genome.wustl.edu	37	1	161137954	161137954	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	161137954	161137954	C	T	SNP	PPOX	ENST00000490768	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PPOX	HGNC	ENSG00000143224				57	0	0	28	11	28.2051
TOMM40L	0	genome.wustl.edu	37	1	161196288	161196288	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	161196288	161196288	C	T	SNP	TOMM40L	ENST00000367987	human	ensembl	74_37	+1	known	silent	c.9	p.N3	0.997	NULL	pfam_Porin_Euk/Tom40	-	no_errors	TOMM40L	HGNC	ENSG00000158882				50	0	0	23	9	28.125
HSPA6	0	genome.wustl.edu	37	1	161495033	161495033	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	161495033	161495033	C	T	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	silent	c.585	p.R195	0.997	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				69	0	0	38	5	11.6279
HSPB7	0	genome.wustl.edu	37	1	16344393	16344393	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	16344393	16344393	G	A	SNP	HSPB7	ENST00000487046	human	ensembl	74_37	-1	known	silent	c.66	p.S22	0.343	NULL	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	HSPB7	HGNC	ENSG00000173641				75	0	0	19	8	29.6296
CLCNKB	0	genome.wustl.edu	37	1	16378753	16378753	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	16378753	16378753	A	G	SNP	CLCNKB	ENST00000375679	human	ensembl	74_37	+1	known	missense	c.1469	p.E490G	0.999	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908				136	0	0	47	26	35.6164
EPHA2	0	genome.wustl.edu	37	1	16464408	16464408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	16464408	16464408	C	T	SNP	EPHA2	ENST00000358432	human	ensembl	74_37	-1	known	missense	c.1252	p.V418I	0.998	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627				123	0	0	34	15	30.6122
SZRD1	0	genome.wustl.edu	37	1	16721660	16721660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	16721660	16721660	G	A	SNP	SZRD1	ENST00000375590	human	ensembl	74_37	+1	known	missense	c.374	p.R125H	0.797	NULL	NULL	-	no_errors	SZRD1	HGNC	ENSG00000055070				38	0	0	20	2	9.09091
DCAF6	0	genome.wustl.edu	37	1	167962538	167962538	+	Silent	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	167962538	167962538	A	C	SNP	DCAF6	ENST00000367840	human	ensembl	74_37	+1	known	silent	c.763	p.R255	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164				64	0	0	37	13	26
SELP	0	genome.wustl.edu	37	1	169586506	169586506	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	169586506	169586506	T	C	SNP	SELP	ENST00000263686	human	ensembl	74_37	-1	known	missense	c.241	p.K81E	0.610	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175				263	0	0	118	51	30.1775
ESPNP	0	genome.wustl.edu	37	1	17023338	17023338	+	RNA	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	17023338	17023338	T	G	SNP	ESPNP	ENST00000492551	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ESPNP	HGNC	ENSG00000268869				84	0	0	35	4	10.2564
FMO4	0	genome.wustl.edu	37	1	171300894	171300894	+	Silent	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	171300894	171300894	T	G	SNP	FMO4	ENST00000367749	human	ensembl	74_37	+1	known	silent	c.600	p.A200	0.519	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	-	no_errors	FMO4	HGNC	ENSG00000076258				256	0	0	86	40	31.746
PRRC2C	0	genome.wustl.edu	37	1	171504603	171504603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	171504603	171504603	G	A	SNP	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	missense	c.1910	p.R637H	0.945	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523				109	0	0	46	19	29.2308
PRRC2C	0	genome.wustl.edu	37	1	171560757	171560757	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	171560757	171560757	C	T	SNP	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	missense	c.8468	p.T2823M	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523				114	0	0	44	26	37.1429
ATP13A2	0	genome.wustl.edu	37	1	17313685	17313685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	17313685	17313685	C	T	SNP	ATP13A2	ENST00000326735	human	ensembl	74_37	-1	known	missense	c.2939	p.R980H	0.994	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A2	HGNC	ENSG00000159363				62	0	0	39	5	11.3636
GPR52	0	genome.wustl.edu	37	1	174418046	174418046	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	174418046	174418046	T	G	SNP	GPR52	ENST00000367685	human	ensembl	74_37	+1	known	missense	c.797	p.V266G	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR52	HGNC	ENSG00000203737				159	0	0	99	39	28.2609
TDRD5	0	genome.wustl.edu	37	1	179600006	179600006	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	179600006	179600006	A	G	SNP	TDRD5	ENST00000444136	human	ensembl	74_37	+1	known	silent	c.1077	p.G359	0.998	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782				130	0	0	49	21	30
QSOX1	0	genome.wustl.edu	37	1	180155204	180155204	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	180155204	180155204	G	T	SNP	QSOX1	ENST00000367602	human	ensembl	74_37	+1	known	missense	c.904	p.A302S	1.000	NULL	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260				99	0	0	45	11	19.6429
HMCN1	0	genome.wustl.edu	37	1	186107063	186107063	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	186107063	186107063	A	G	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.13883	p.N4628S	0.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				120	0	0	42	27	39.1304
ZBTB41	0	genome.wustl.edu	37	1	197147552	197147552	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	197147552	197147552	C	T	SNP	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	silent	c.1767	p.S589	0.915	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888				66	0	0	28	13	31.7073
DENND1B	0	genome.wustl.edu	37	1	197704823	197704823	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	197704823	197704823	C	T	SNP	DENND1B	ENST00000477581	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DENND1B	HGNC	ENSG00000213047				55	0	0	20	8	28.5714
PTPRC	0	genome.wustl.edu	37	1	198608465	198608465	+	Splice_Site	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	198608465	198608465	G	A	SNP	PTPRC	ENST00000391970	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.028	-	-	-	no_errors	PTPRC	HGNC	ENSG00000081237				126	0	0	42	26	38.2353
TMCO4	0	genome.wustl.edu	37	1	20020975	20020975	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	20020975	20020975	G	A	SNP	TMCO4	ENST00000294543	human	ensembl	74_37	-1	known	silent	c.1452	p.P484	0.967	pfam_DUF726,pfam_DUF900_hydrolase	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542				152	0	0	55	22	28.5714
IPO9	0	genome.wustl.edu	37	1	201816700	201816700	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	201816700	201816700	A	C	SNP	IPO9	ENST00000361565	human	ensembl	74_37	+1	known	missense	c.246	p.K82N	0.999	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO9	HGNC	ENSG00000198700				104	0	0	36	18	33.3333
ARL8A	0	genome.wustl.edu	37	1	202104870	202104870	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	202104870	202104870	T	C	SNP	ARL8A	ENST00000272217	human	ensembl	74_37	-1	known	missense	c.337	p.N113D	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL8A	HGNC	ENSG00000143862				55	0	0	22	15	40.5405
PTPN7	0	genome.wustl.edu	37	1	202126901	202126901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	202126901	202126901	G	A	SNP	PTPN7	ENST00000496197	human	ensembl	74_37	-1	known	missense	c.304	p.R102C	0.141	NULL	NULL	-	no_errors	PTPN7	HGNC	ENSG00000143851				140	1	0.70922	45	37	45.122
LGR6	0	genome.wustl.edu	37	1	202287836	202287836	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	202287836	202287836	C	A	SNP	LGR6	ENST00000367278	human	ensembl	74_37	+1	known	missense	c.2405	p.P802H	0.978	pfam_GPCR_Rhodpsn	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067				180	0	0	49	27	35.5263
KDM5B	0	genome.wustl.edu	37	1	202715099	202715099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	202715099	202715099	G	A	SNP	KDM5B	ENST00000367264	human	ensembl	74_37	-1	known	missense	c.2318	p.T773M	1.000	pfam_Znf_C5HC2	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139				208	0	0	91	37	28.9062
MYOG	0	genome.wustl.edu	37	1	203054840	203054840	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	203054840	203054840	G	A	SNP	MYOG	ENST00000241651	human	ensembl	74_37	-1	known	missense	c.250	p.R84W	0.998	pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,pfscan_bHLH_dom	pfam_Basic,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYOG	HGNC	ENSG00000122180				135	0	0	53	21	28.3784
OPTC	0	genome.wustl.edu	37	1	203467905	203467905	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	203467905	203467905	C	T	SNP	OPTC	ENST00000367222	human	ensembl	74_37	+1	known	missense	c.467	p.A156V	0.656	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OPTC	HGNC	ENSG00000188770				104	0	0	38	21	35.5932
PIK3C2B	0	genome.wustl.edu	37	1	204438319	204438319	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	204438319	204438319	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	silent	c.612	p.E204	0.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				542	0	0	199	95	32.3129
DSTYK	0	genome.wustl.edu	37	1	205126463	205126463	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	205126463	205126463	C	T	SNP	DSTYK	ENST00000367162	human	ensembl	74_37	-1	known	missense	c.2290	p.G764R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DSTYK	HGNC	ENSG00000133059				114	0	0	34	17	33.3333
SLC26A9	0	genome.wustl.edu	37	1	205892468	205892468	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	205892468	205892468	C	T	SNP	SLC26A9	ENST00000340781	human	ensembl	74_37	-1	known	missense	c.1654	p.A552T	0.994	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502				165	0	0	70	27	27.8351
CD55	0	genome.wustl.edu	37	1	207500173	207500173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	207500173	207500173	G	A	SNP	CD55	ENST00000314754	human	ensembl	74_37	+1	known	missense	c.655	p.E219K	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CD55	HGNC	ENSG00000196352				168	0	0	51	24	32
CR1	0	genome.wustl.edu	37	1	207679429	207679429	+	Splice_Site	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	207679429	207679429	G	A	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	splice_site	c.301+1	e2+1	0.997	-	-	-	no_errors	CR1	HGNC	ENSG00000203710				175	0	0	64	25	28.0899
TRAF3IP3	0	genome.wustl.edu	37	1	209955413	209955413	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	209955413	209955413	C	T	SNP	TRAF3IP3	ENST00000367024	human	ensembl	74_37	+1	known	nonsense	c.1576	p.R526*	0.007	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790				102	0	0	34	10	22.7273
IRF6	0	genome.wustl.edu	37	1	209961990	209961990	+	Splice_Site	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	209961990	209961990	C	A	SNP	IRF6	ENST00000367021	human	ensembl	74_37	-1	known	splice_site	c.1180-1	e7-1	1.000	-	-	-	no_errors	IRF6	HGNC	ENSG00000117595				52	0	0	28	13	31.7073
ATF3	0	genome.wustl.edu	37	1	212788567	212788567	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	212788567	212788567	C	T	SNP	ATF3	ENST00000341491	human	ensembl	74_37	+1	known	silent	c.204	p.S68	1.000	superfamily_TF_DNA-bd	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	ATF3	HGNC	ENSG00000162772				90	0	0	34	21	38.1818
USH2A	0	genome.wustl.edu	37	1	216462723	216462723	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	216462723	216462723	A	G	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.1870	p.F624L	1.000	pfam_EGF_laminin,smart_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				156	0	0	51	27	34.6154
HSPG2	0	genome.wustl.edu	37	1	22177999	22177999	+	RNA	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	22177999	22177999	C	A	SNP	HSPG2	ENST00000493940	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSPG2	HGNC	ENSG00000142798				63	0	0	27	22	44.898
HSPG2	0	genome.wustl.edu	37	1	22178631	22178631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	22178631	22178631	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.6820	p.A2274T	0.983	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				74	0	0	30	13	30.2326
DUSP10	0	genome.wustl.edu	37	1	221879607	221879607	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	221879607	221879607	T	C	SNP	DUSP10	ENST00000366899	human	ensembl	74_37	-1	known	missense	c.1013	p.Q338R	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507				277	0	0	94	38	28.7879
HSPG2	0	genome.wustl.edu	37	1	22199882	22199882	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	22199882	22199882	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3779	p.G1260A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				265	1	0.37594	90	41	31.2977
CELA3A	0	genome.wustl.edu	37	1	22336257	22336257	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	22336257	22336257	T	C	SNP	CELA3A	ENST00000290122	human	ensembl	74_37	+1	known	silent	c.702	p.G234	0.259	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CELA3A	HGNC	ENSG00000142789				96	0	0	32	12	27.2727
ENAH	0	genome.wustl.edu	37	1	225707022	225707022	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	225707022	225707022	T	C	SNP	ENAH	ENST00000366844	human	ensembl	74_37	-1	known	missense	c.680	p.Q227R	0.968	NULL	pfam_WH1/EVH1,pfam_VASP_tetra,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380				292	0	0	121	43	26.2195
TMEM63A	0	genome.wustl.edu	37	1	226053597	226053597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	226053597	226053597	C	T	SNP	TMEM63A	ENST00000366835	human	ensembl	74_37	-1	known	missense	c.746	p.R249Q	1.000	NULL	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187				45	0	0	15	7	31.8182
OBSCN	0	genome.wustl.edu	37	1	228430947	228430947	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	228430947	228430947	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.2993	p.A998G	0.015	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				52	0	0	6	8	57.1429
OBSCN	0	genome.wustl.edu	37	1	228434292	228434292	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	228434292	228434292	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3821	p.A1274G	0.014	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				175	0	0	59	7	10.6061
OBSCN	0	genome.wustl.edu	37	1	228506694	228506694	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	228506694	228506694	T	C	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.14241	p.R4747	0.935	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				8	0	0	2	3	60
OBSCN	0	genome.wustl.edu	37	1	228538616	228538616	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	228538616	228538616	A	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.18391	p.I6131V	0.993	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				80	0	0	21	11	34.375
OBSCN	0	genome.wustl.edu	37	1	228556588	228556588	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	228556588	228556588	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.19933	p.D6645N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				143	0	0	61	30	32.967
C1QA	0	genome.wustl.edu	37	1	22964233	22964233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	22964233	22964233	C	T	SNP	C1QA	ENST00000374642	human	ensembl	74_37	+1	known	missense	c.124	p.R42W	0.274	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QA	HGNC	ENSG00000173372				18	0	0	3	3	50
C1QB	0	genome.wustl.edu	37	1	22987549	22987549	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	22987549	22987549	C	T	SNP	C1QB	ENST00000314933	human	ensembl	74_37	+1	known	silent	c.432	p.H144	0.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QB	HGNC	ENSG00000173369				192	0	0	64	29	31.1828
TTC13	0	genome.wustl.edu	37	1	231061267	231061267	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	231061267	231061267	G	A	SNP	TTC13	ENST00000366661	human	ensembl	74_37	-1	known	silent	c.1584	p.H528	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC13	HGNC	ENSG00000143643				100	0	0	52	27	34.1772
C1orf131	0	genome.wustl.edu	37	1	231362504	231362504	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	231362504	231362504	T	G	SNP	C1orf131	ENST00000366649	human	ensembl	74_37	-1	known	missense	c.674	p.K225T	0.997	NULL	NULL	-	no_errors	C1orf131	HGNC	ENSG00000143633				193	0	0	45	18	28.5714
EPHB2	0	genome.wustl.edu	37	1	23234598	23234598	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	23234598	23234598	G	A	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	silent	c.2289	p.S763	0.984	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				136	0	0	58	25	30.1205
SIPA1L2	0	genome.wustl.edu	37	1	232539885	232539885	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	232539885	232539885	T	C	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.4802	p.H1601R	0.996	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				98	0	0	29	5	14.7059
KDM1A	0	genome.wustl.edu	37	1	23382484	23382484	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	23382484	23382484	C	A	SNP	KDM1A	ENST00000542151	human	ensembl	74_37	+1	known	silent	c.943	p.R315	1.000	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pirsf_Hist_Lys-spec_deMease	pfam_Amino_oxidase,pfam_SWIRM,pfam_FAD-dep_OxRdtase,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pirsf_Hist_Lys-spec_deMease,pfscan_SWIRM	-	no_errors	KDM1A	HGNC	ENSG00000004487				192	0	0	60	22	26.8293
TBCE	0	genome.wustl.edu	37	1	235594095	235594095	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	235594095	235594095	T	G	SNP	TBCE	ENST00000543662	human	ensembl	74_37	+1	known	missense	c.636	p.N212K	0.057	NULL	pfam_CAP-Gly_domain,pfam_Ribosomal_S21e,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	TBCE	HGNC	ENSG00000116957				53	0	0	20	10	33.3333
HEATR1	0	genome.wustl.edu	37	1	236744679	236744679	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	236744679	236744679	G	A	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	silent	c.2598	p.F866	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				157	1	0.632911	60	26	30.2326
E2F2	0	genome.wustl.edu	37	1	23845545	23845545	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	23845545	23845545	G	T	SNP	E2F2	ENST00000361729	human	ensembl	74_37	-1	known	missense	c.815	p.P272H	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F2	HGNC	ENSG00000007968				69	0	0	31	14	31.1111
KMO	0	genome.wustl.edu	37	1	241712984	241712984	+	Silent	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	241712984	241712984	A	T	SNP	KMO	ENST00000366559	human	ensembl	74_37	+1	known	silent	c.132	p.R44	0.990	pfam_mOase_FAD-bd	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	-	no_errors	KMO	HGNC	ENSG00000117009				141	0	0	55	14	20.2899
OR2M5	0	genome.wustl.edu	37	1	248309019	248309019	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	248309019	248309019	T	C	SNP	OR2M5	ENST00000366476	human	ensembl	74_37	+1	known	silent	c.570	p.N190	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727				431	0	0	211	88	29.4314
OR2T33	0	genome.wustl.edu	37	1	248436928	248436928	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	248436928	248436928	T	A	SNP	OR2T33	ENST00000318021	human	ensembl	74_37	-1	known	missense	c.189	p.Q63H	0.566	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212				224	0	0	91	35	27.7778
OR2T11	0	genome.wustl.edu	37	1	248790195	248790195	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	248790195	248790195	G	T	SNP	OR2T11	ENST00000330803	human	ensembl	74_37	-1	known	missense	c.235	p.L79M	0.063	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T11	HGNC	ENSG00000183130				88	0	0	39	22	36.0656
ZNF672	0	genome.wustl.edu	37	1	249142338	249142338	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	249142338	249142338	G	A	SNP	ZNF672	ENST00000306562	human	ensembl	74_37	+1	known	missense	c.865	p.G289S	0.982	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF672	HGNC	ENSG00000171161				18	0	0	8	3	27.2727
ZNF692	0	genome.wustl.edu	37	1	249151439	249151439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	249151439	249151439	G	A	SNP	ZNF692	ENST00000451251	human	ensembl	74_37	-1	known	missense	c.484	p.L162F	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF692	HGNC	ENSG00000171163				107	0	0	42	22	34.375
MAN1C1	0	genome.wustl.edu	37	1	26073179	26073179	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	26073179	26073179	G	A	SNP	MAN1C1	ENST00000374332	human	ensembl	74_37	+1	known	missense	c.658	p.V220I	0.019	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1C1	HGNC	ENSG00000117643				57	0	0	16	6	27.2727
AUNIP	0	genome.wustl.edu	37	1	26162205	26162205	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	26162205	26162205	G	T	SNP	AUNIP	ENST00000538789	human	ensembl	74_37	-1	known	missense	c.353	p.P118H	0.921	NULL	NULL	-	no_errors	AUNIP	HGNC	ENSG00000127423				128	0	0	56	23	29.1139
SLC30A2	0	genome.wustl.edu	37	1	26370880	26370880	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	26370880	26370880	A	G	SNP	SLC30A2	ENST00000374276	human	ensembl	74_37	-1	known	silent	c.327	p.T109	0.522	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A2	HGNC	ENSG00000158014				35	0	0	17	5	22.7273
TRIM63	0	genome.wustl.edu	37	1	26385070	26385070	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	26385070	26385070	G	A	SNP	TRIM63	ENST00000374272	human	ensembl	74_37	-1	known	silent	c.642	p.D214	0.005	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM63	HGNC	ENSG00000158022				208	0	0	84	36	30
ZNF683	0	genome.wustl.edu	37	1	26689609	26689609	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	26689609	26689609	G	T	SNP	ZNF683	ENST00000403843	human	ensembl	74_37	-1	known	missense	c.1051	p.Q351K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF683	HGNC	ENSG00000176083				35	0	0	10	4	28.5714
PIGV	0	genome.wustl.edu	37	1	27124087	27124087	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	27124087	27124087	A	G	SNP	PIGV	ENST00000078527	human	ensembl	74_37	+1	known	missense	c.1234	p.I412V	0.932	pfam_GPI_Mannosyltransferase_2	pfam_GPI_Mannosyltransferase_2	-	no_errors	PIGV	HGNC	ENSG00000060642				189	0	0	72	25	25.7732
C1orf172	0	genome.wustl.edu	37	1	27278207	27278207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	27278207	27278207	G	A	SNP	C1orf172	ENST00000320567	human	ensembl	74_37	-1	known	missense	c.665	p.S222L	0.997	NULL	NULL	-	no_errors	C1orf172	HGNC	ENSG00000175707				60	0	0	33	21	38.8889
WDTC1	0	genome.wustl.edu	37	1	27630202	27630202	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	27630202	27630202	G	A	SNP	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	missense	c.1559	p.R520Q	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				209	0	0	58	30	34.0909
SMPDL3B	0	genome.wustl.edu	37	1	28271805	28271805	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	28271805	28271805	T	C	SNP	SMPDL3B	ENST00000373894	human	ensembl	74_37	+1	known	missense	c.124	p.F42L	0.000	pfam_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	pfam_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	-	no_errors	SMPDL3B	HGNC	ENSG00000130768				82	0	0	28	17	37.7778
PTPRU	0	genome.wustl.edu	37	1	29609223	29609223	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	29609223	29609223	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.1904	p.R635Q	0.981	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				54	0	0	30	17	36.1702
PTPRU	0	genome.wustl.edu	37	1	29609286	29609286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	29609286	29609286	C	T	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.1967	p.A656V	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				102	0	0	48	21	30.4348
BAI2	0	genome.wustl.edu	37	1	32205105	32205105	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	32205105	32205105	T	G	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	missense	c.2299	p.S767R	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753				48	0	0	13	9	40.9091
BAI2	0	genome.wustl.edu	37	1	32207266	32207266	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	32207266	32207266	G	A	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	missense	c.1646	p.A549V	1.000	smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753				77	0	0	35	18	33.9623
IQCC	0	genome.wustl.edu	37	1	32672208	32672208	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	32672208	32672208	G	T	SNP	IQCC	ENST00000537469	human	ensembl	74_37	+1	known	missense	c.525	p.E175D	0.016	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCC	HGNC	ENSG00000160051				143	0	0	55	25	31.25
ZNF362	0	genome.wustl.edu	37	1	33745827	33745827	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	33745827	33745827	C	G	SNP	ZNF362	ENST00000373428	human	ensembl	74_37	+1	known	missense	c.452	p.T151S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094				224	0	0	75	15	16.6667
A3GALT2	0	genome.wustl.edu	37	1	33773018	33773018	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	33773018	33773018	C	T	SNP	A3GALT2	ENST00000442999	human	ensembl	74_37	-1	novel	silent	c.372	p.T124	0.155	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	A3GALT2	HGNC	ENSG00000184389				134	0	0	32	11	25.5814
CSMD2	0	genome.wustl.edu	37	1	33985139	33985139	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	33985139	33985139	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	silent	c.10875	p.S3625	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				197	0	0	87	38	30.4
CSMD2	0	genome.wustl.edu	37	1	34117960	34117960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	34117960	34117960	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.4549	p.V1517I	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				188	0	0	41	21	33.871
CSMD2	0	genome.wustl.edu	37	1	34204792	34204792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	34204792	34204792	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.2317	p.V773I	0.908	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				62	0	0	25	13	34.2105
GJB4	0	genome.wustl.edu	37	1	35227553	35227553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	35227553	35227553	C	T	SNP	GJB4	ENST00000339480	human	ensembl	74_37	+1	known	missense	c.698	p.T233M	0.001	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin303	-	no_errors	GJB4	HGNC	ENSG00000189433				79	0	0	25	12	32.4324
CSF3R	0	genome.wustl.edu	37	1	36938264	36938264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	36938264	36938264	G	A	SNP	CSF3R	ENST00000373103	human	ensembl	74_37	-1	known	missense	c.697	p.R233W	0.172	superfamily_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF3R	HGNC	ENSG00000119535				23	0	0	10	11	52.381
EPHA10	0	genome.wustl.edu	37	1	38184382	38184382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	38184382	38184382	C	T	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	missense	c.2863	p.A955T	0.094	pirsf_Tyr_kinase_ephrin_rcpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				63	0	0	17	7	29.1667
KIAA0754	0	genome.wustl.edu	37	1	39877867	39877867	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	39877867	39877867	G	A	SNP	KIAA0754	ENST00000530275	human	ensembl	74_37	+1	known	missense	c.1522	p.E508K	0.012	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103				300	0	0	105	43	29.0541
PPIE	0	genome.wustl.edu	37	1	40219004	40219004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	40219004	40219004	G	A	SNP	PPIE	ENST00000324379	human	ensembl	74_37	+1	known	missense	c.883	p.A295T	0.923	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pirsf_Cyclophilin-type_PPIase_E,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_RRM_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_RRM_dom,pirsf_Cyclophilin-type_PPIase_E,pfscan_RRM_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIE	HGNC	ENSG00000084072				114	0	0	29	12	29.2683
ZFP69B	0	genome.wustl.edu	37	1	40928171	40928171	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	40928171	40928171	T	C	SNP	ZFP69B	ENST00000411995	human	ensembl	74_37	+1	known	missense	c.515	p.M172T	0.200	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZFP69B	HGNC	ENSG00000187801				273	0	0	74	34	31.4815
MPL	0	genome.wustl.edu	37	1	43805156	43805156	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	43805156	43805156	A	G	SNP	MPL	ENST00000372470	human	ensembl	74_37	+1	known	silent	c.606	p.S202	0.158	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	MPL	HGNC	ENSG00000117400				143	0	0	62	25	28.7356
SZT2	0	genome.wustl.edu	37	1	43905354	43905354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	43905354	43905354	C	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	missense	c.6785	p.P2262L	0.994	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				149	0	0	62	32	34.0426
DPH2	0	genome.wustl.edu	37	1	44437851	44437851	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	44437851	44437851	T	C	SNP	DPH2	ENST00000255108	human	ensembl	74_37	+1	known	missense	c.1190	p.L397P	1.000	tigrfam_DHP2_eu	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	-	no_errors	DPH2	HGNC	ENSG00000132768				148	0	0	51	18	26.087
SLC6A9	0	genome.wustl.edu	37	1	44489952	44489952	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	44489952	44489952	C	T	SNP	SLC6A9	ENST00000492434	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC6A9	HGNC	ENSG00000196517				368	1	0.271003	133	61	31.4433
TESK2	0	genome.wustl.edu	37	1	45810847	45810847	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	45810847	45810847	G	T	SNP	TESK2	ENST00000372086	human	ensembl	74_37	-1	known	missense	c.1381	p.P461T	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759				186	0	0	66	41	38.3178
TESK2	0	genome.wustl.edu	37	1	45851582	45851582	+	Splice_Site	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	45851582	45851582	A	G	SNP	TESK2	ENST00000372086	human	ensembl	74_37	-1	known	splice_site	c.393+2	e3+2	1.000	-	-	-	no_errors	TESK2	HGNC	ENSG00000070759				75	0	0	19	19	50
CCDC17	0	genome.wustl.edu	37	1	46086396	46086396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	46086396	46086396	G	A	SNP	CCDC17	ENST00000343901	human	ensembl	74_37	-1	known	missense	c.1613	p.P538L	0.000	NULL	NULL	-	no_errors	CCDC17	HGNC	ENSG00000159588				11	0	0	3	2	40
POMGNT1	0	genome.wustl.edu	37	1	46659402	46659402	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	46659402	46659402	T	C	SNP	POMGNT1	ENST00000477114	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POMGNT1	HGNC	ENSG00000085998				18	0	0	12	5	29.4118
TTC39A	0	genome.wustl.edu	37	1	51760082	51760082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	51760082	51760082	G	A	SNP	TTC39A	ENST00000447632	human	ensembl	74_37	-1	known	missense	c.1355	p.S452L	0.024	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39A	HGNC	ENSG00000085831				69	0	0	27	4	12.9032
NRD1	0	genome.wustl.edu	37	1	52279744	52279744	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	52279744	52279744	C	T	SNP	NRD1	ENST00000354831	human	ensembl	74_37	-1	known	missense	c.1841	p.R614Q	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	NRD1	HGNC	ENSG00000078618				69	0	0	25	5	16.6667
ORC1	0	genome.wustl.edu	37	1	52839017	52839017	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	52839017	52839017	T	G	SNP	ORC1	ENST00000371566	human	ensembl	74_37	-1	known	missense	c.2422	p.M808L	0.967	pfam_Cdc6_C_dom	pfam_BAH_dom,pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,pfam_DUF2075,superfamily_P-loop_NTPase,smart_BAH_dom,smart_AAA+_ATPase,pfscan_BAH_dom	-	no_errors	ORC1	HGNC	ENSG00000085840				90	0	0	49	13	20.9677
DMRTB1	0	genome.wustl.edu	37	1	53930372	53930372	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	53930372	53930372	G	A	SNP	DMRTB1	ENST00000371445	human	ensembl	74_37	+1	known	silent	c.813	p.L271	0.000	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTB1	HGNC	ENSG00000143006				92	0	0	46	17	26.9841
GLIS1	0	genome.wustl.edu	37	1	53986414	53986414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	53986414	53986414	G	A	SNP	GLIS1	ENST00000312233	human	ensembl	74_37	-1	known	missense	c.1094	p.A365V	0.960	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS1	HGNC	ENSG00000174332				15	0	0	9	8	47.0588
FGGY	0	genome.wustl.edu	37	1	60125996	60125996	+	RNA	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	60125996	60125996	A	T	SNP	FGGY	ENST00000485720	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	FGGY	HGNC	ENSG00000172456				54	0	0	25	13	34.2105
INADL	0	genome.wustl.edu	37	1	62330097	62330097	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	62330097	62330097	A	T	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	missense	c.2627	p.Y876F	1.000	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				105	0	0	37	22	37.2881
INADL	0	genome.wustl.edu	37	1	62330117	62330117	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	62330117	62330117	T	G	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	missense	c.2647	p.S883A	0.000	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				124	0	0	49	29	37.1795
EFCAB7	0	genome.wustl.edu	37	1	64022887	64022887	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	64022887	64022887	A	C	SNP	EFCAB7	ENST00000371088	human	ensembl	74_37	+1	known	missense	c.1317	p.K439N	0.995	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB7	HGNC	ENSG00000203965				66	0	0	28	11	28.2051
ESPN	0	genome.wustl.edu	37	1	6504723	6504723	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	6504723	6504723	G	T	SNP	ESPN	ENST00000377828	human	ensembl	74_37	+1	known	missense	c.1173	p.K391N	0.949	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_WH2_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_WH2_dom	-	no_errors	ESPN	HGNC	ENSG00000187017				137	0	0	51	21	29.1667
LRRIQ3	0	genome.wustl.edu	37	1	74492637	74492637	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	74492637	74492637	T	C	SNP	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	missense	c.1735	p.K579E	0.672	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				43	0	0	37	9	19.5652
C1orf173	0	genome.wustl.edu	37	1	75038908	75038908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	75038908	75038908	C	T	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.2486	p.R829K	0.001	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				162	0	0	86	13	13.1313
SLC44A5	0	genome.wustl.edu	37	1	75688134	75688134	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	75688134	75688134	A	G	SNP	SLC44A5	ENST00000370855	human	ensembl	74_37	-1	known	missense	c.997	p.C333R	0.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A5	HGNC	ENSG00000137968				63	0	0	20	12	37.5
CAMTA1	0	genome.wustl.edu	37	1	7724488	7724488	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	7724488	7724488	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	silent	c.1881	p.V627	0.389	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				400	0	0	113	45	28.481
CAMTA1	0	genome.wustl.edu	37	1	7811260	7811260	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	7811260	7811260	A	G	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.4691	p.Y1564C	1.000	superfamily_P-loop_NTPase	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				535	1	0.186567	182	65	26.3158
HS2ST1	0	genome.wustl.edu	37	1	87538643	87538643	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	87538643	87538643	C	T	SNP	HS2ST1	ENST00000370550	human	ensembl	74_37	+1	known	nonsense	c.151	p.R51*	0.990	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS2ST1	HGNC	ENSG00000153936				57	0	0	26	12	31.5789
GPR157	0	genome.wustl.edu	37	1	9165734	9165734	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	9165734	9165734	C	T	SNP	GPR157	ENST00000377411	human	ensembl	74_37	-1	known	silent	c.603	p.T201	0.967	pfam_GPCR_2_secretin-like,pfam_GPCR_Rhodpsn,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_Rhodpsn,pfam_Frizzled,pfscan_GPCR_Rhodpsn_7TM,pfscan_GPCR_2-like,prints_GCR1-cAMP_receptor	-	no_errors	GPR157	HGNC	ENSG00000180758				40	0	0	5	5	50
BRDT	0	genome.wustl.edu	37	1	92442712	92442712	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	92442712	92442712	C	A	SNP	BRDT	ENST00000362005	human	ensembl	74_37	+1	known	missense	c.731	p.P244H	0.042	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948				58	0	0	34	11	24.4444
MTF2	0	genome.wustl.edu	37	1	93602324	93602324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	93602324	93602324	C	T	SNP	MTF2	ENST00000370298	human	ensembl	74_37	+1	known	missense	c.1522	p.L508F	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033				160	0	0	70	36	33.9623
BCAR3	0	genome.wustl.edu	37	1	94054660	94054660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	94054660	94054660	G	A	SNP	BCAR3	ENST00000260502	human	ensembl	74_37	-1	known	missense	c.803	p.T268I	0.005	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936				32	0	0	18	9	33.3333
PIK3CD	0	genome.wustl.edu	37	1	9775947	9775947	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	9775947	9775947	C	T	SNP	PIK3CD	ENST00000536656	human	ensembl	74_37	+1	known	silent	c.411	p.N137	0.691	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608				45	0	0	15	4	21.0526
LPPR4	0	genome.wustl.edu	37	1	99767288	99767288	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	99767288	99767288	C	A	SNP	LPPR4	ENST00000370185	human	ensembl	74_37	+1	known	missense	c.801	p.F267L	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR4	Uniprot_gn	ENSG00000117600				81	0	0	46	21	31.3433
LOXL4	0	genome.wustl.edu	37	10	100013355	100013355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	100013355	100013355	C	T	SNP	LOXL4	ENST00000260702	human	ensembl	74_37	-1	known	missense	c.1790	p.R597H	0.991	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL4	HGNC	ENSG00000138131				94	0	0	39	22	36.0656
SEC31B	0	genome.wustl.edu	37	10	102256140	102256140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	102256140	102256140	G	A	SNP	SEC31B	ENST00000370345	human	ensembl	74_37	-1	known	missense	c.2185	p.R729W	0.747	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826				110	0	0	50	15	23.0769
PITX3	0	genome.wustl.edu	37	10	103990294	103990294	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	103990294	103990294	A	G	SNP	PITX3	ENST00000370002	human	ensembl	74_37	-1	known	missense	c.886	p.Y296H	1.000	pirsf_Homeobox_Pitx/unc30	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PITX3	HGNC	ENSG00000107859				23	0	0	7	4	36.3636
PSD	0	genome.wustl.edu	37	10	104174761	104174761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	104174761	104174761	G	A	SNP	PSD	ENST00000020673	human	ensembl	74_37	-1	known	missense	c.983	p.A328V	0.003	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915				48	0	0	23	13	36.1111
CALHM2	0	genome.wustl.edu	37	10	105207210	105207210	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	105207210	105207210	C	A	SNP	CALHM2	ENST00000260743	human	ensembl	74_37	-1	known	missense	c.671	p.R224L	0.997	NULL	NULL	-	no_errors	CALHM2	HGNC	ENSG00000138172				57	0	0	23	11	32.3529
SORCS1	0	genome.wustl.edu	37	10	108489870	108489870	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	108489870	108489870	G	T	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.962	p.S321Y	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				70	0	0	59	4	6.34921
ADRA2A	0	genome.wustl.edu	37	10	112838476	112838476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	112838476	112838476	G	A	SNP	ADRA2A	ENST00000280155	human	ensembl	74_37	+1	known	missense	c.722	p.R241H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_Musac_Ach_rcpt	-	no_errors	ADRA2A	HGNC	ENSG00000150594				17	0	0	2	3	60
TCF7L2	0	genome.wustl.edu	37	10	114905796	114905796	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	114905796	114905796	C	T	SNP	TCF7L2	ENST00000355995	human	ensembl	74_37	+1	known	missense	c.815	p.T272M	1.000	NULL	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L2	HGNC	ENSG00000148737				268	0	0	92	28	23.3333
PDZD8	0	genome.wustl.edu	37	10	119044515	119044515	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	119044515	119044515	G	A	SNP	PDZD8	ENST00000334464	human	ensembl	74_37	-1	known	nonsense	c.1729	p.Q577*	0.989	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650				188	0	0	101	39	27.8571
PRLHR	0	genome.wustl.edu	37	10	120354633	120354633	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	120354633	120354633	C	T	SNP	PRLHR	ENST00000239032	human	ensembl	74_37	-1	known	missense	c.124	p.A42T	0.000	prints_Prolrel_pep_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prolrel_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PRLHR	HGNC	ENSG00000119973				109	0	0	42	12	22.2222
WDR11	0	genome.wustl.edu	37	10	122660586	122660586	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	122660586	122660586	A	G	SNP	WDR11	ENST00000263461	human	ensembl	74_37	+1	known	missense	c.2663	p.Q888R	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008				59	0	0	36	11	23.4043
MMP21	0	genome.wustl.edu	37	10	127464267	127464267	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	127464267	127464267	G	T	SNP	MMP21	ENST00000368808	human	ensembl	74_37	-1	known	missense	c.124	p.R42S	0.046	pirsf_Pept_M10A_Metazoans	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP21	HGNC	ENSG00000154485				92	0	0	31	18	36.7347
PTPRE	0	genome.wustl.edu	37	10	129870413	129870413	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	129870413	129870413	C	T	SNP	PTPRE	ENST00000254667	human	ensembl	74_37	+1	known	nonsense	c.1399	p.R467*	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRE	HGNC	ENSG00000132334				52	0	0	20	9	31.0345
JAKMIP3	0	genome.wustl.edu	37	10	133963536	133963536	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	133963536	133963536	C	T	SNP	JAKMIP3	ENST00000298622	human	ensembl	74_37	+1	known	silent	c.1998	p.N666	1.000	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385				30	0	0	7	6	46.1538
JAKMIP3	0	genome.wustl.edu	37	10	133976761	133976761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	133976761	133976761	G	A	SNP	JAKMIP3	ENST00000298622	human	ensembl	74_37	+1	known	missense	c.2263	p.A755T	0.821	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385				9	0	0	6	3	33.3333
TTC40	0	genome.wustl.edu	37	10	134752232	134752232	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	134752232	134752232	A	G	SNP	TTC40	ENST00000368582	human	ensembl	74_37	-1	known	missense	c.397	p.S133P	0.385	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811				178	0	0	64	18	21.9512
ZNF511	0	genome.wustl.edu	37	10	135125330	135125330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	135125330	135125330	G	A	SNP	ZNF511	ENST00000368554	human	ensembl	74_37	+1	known	missense	c.470	p.R157Q	0.061	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF511	HGNC	ENSG00000198546				196	1	0.507614	55	23	29.4872
CYP2E1	0	genome.wustl.edu	37	10	135350651	135350651	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	135350651	135350651	A	G	SNP	CYP2E1	ENST00000252945	human	ensembl	74_37	+1	known	missense	c.1052	p.D351G	0.998	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2E-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2E1	HGNC	ENSG00000130649				121	0	0	43	23	34.8485
NSUN6	0	genome.wustl.edu	37	10	18905144	18905144	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	18905144	18905144	G	T	SNP	NSUN6	ENST00000377304	human	ensembl	74_37	-1	known	silent	c.390	p.V130	1.000	pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA,prints_RCMT	-	no_errors	NSUN6	HGNC	ENSG00000241058				84	0	0	38	9	19.1489
ARMC3	0	genome.wustl.edu	37	10	23257331	23257331	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	23257331	23257331	A	T	SNP	ARMC3	ENST00000298032	human	ensembl	74_37	+1	known	nonsense	c.829	p.K277*	0.994	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309				83	0	0	25	10	28.5714
GAD2	0	genome.wustl.edu	37	10	26505771	26505771	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	26505771	26505771	C	T	SNP	GAD2	ENST00000259271	human	ensembl	74_37	+1	known	silent	c.33	p.F11	1.000	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD2	HGNC	ENSG00000136750				118	0	0	35	11	23.913
YME1L1	0	genome.wustl.edu	37	10	27434472	27434472	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	27434472	27434472	T	C	SNP	YME1L1	ENST00000326799	human	ensembl	74_37	-1	known	silent	c.387	p.G129	0.999	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758				151	0	0	49	21	30
SVIL	0	genome.wustl.edu	37	10	29770534	29770534	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	29770534	29770534	G	A	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	silent	c.5079	p.P1693	0.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				580	0	0	174	91	34.3396
GJD4	0	genome.wustl.edu	37	10	35897009	35897009	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	35897009	35897009	C	T	SNP	GJD4	ENST00000321660	human	ensembl	74_37	+1	known	missense	c.568	p.R190W	0.967	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJD4	HGNC	ENSG00000177291				36	0	0	14	6	30
HSD17B7P2	0	genome.wustl.edu	37	10	38647309	38647309	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	38647309	38647309	C	T	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				43	0	0	19	8	29.6296
ALOX5	0	genome.wustl.edu	37	10	45941064	45941064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	45941064	45941064	C	T	SNP	ALOX5	ENST00000374391	human	ensembl	74_37	+1	known	missense	c.1954	p.R652C	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C,pfscan_PLAT/LH2_dom	-	no_errors	ALOX5	HGNC	ENSG00000012779				170	0	0	65	30	31.5789
GPRIN2	0	genome.wustl.edu	37	10	46999285	46999285	+	Silent	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	46999285	46999285	T	G	SNP	GPRIN2	ENST00000374314	human	ensembl	74_37	+1	known	silent	c.405	p.G135	0.000	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175				43	0	0	36	7	16.2791
GPRIN2	0	genome.wustl.edu	37	10	47000142	47000142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	47000142	47000142	C	T	SNP	GPRIN2	ENST00000374314	human	ensembl	74_37	+1	known	missense	c.1262	p.A421V	0.037	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175				52	0	0	37	3	7.5
BMS1P5	0	genome.wustl.edu	37	10	48922709	48922709	+	RNA	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	48922709	48922709	A	C	SNP	BMS1P5	ENST00000436180	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	BMS1P5	HGNC	ENSG00000204164				139	0	0	44	10	18.5185
LRRC18	0	genome.wustl.edu	37	10	50122058	50122058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	50122058	50122058	C	T	SNP	LRRC18	ENST00000374160	human	ensembl	74_37	-1	known	missense	c.143	p.R48H	0.414	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC18	HGNC	ENSG00000165383				100	0	0	38	25	39.6825
SLC18A3	0	genome.wustl.edu	37	10	50820285	50820285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	50820285	50820285	G	A	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	missense	c.1499	p.R500H	0.996	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				134	0	0	63	21	25
CHAT	0	genome.wustl.edu	37	10	50835782	50835782	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	50835782	50835782	G	A	SNP	CHAT	ENST00000337653	human	ensembl	74_37	+1	known	silent	c.1062	p.T354	0.736	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CHAT	HGNC	ENSG00000070748				113	0	0	46	22	32.3529
CSTF2T	0	genome.wustl.edu	37	10	53458192	53458192	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	53458192	53458192	C	T	SNP	CSTF2T	ENST00000331173	human	ensembl	74_37	-1	known	missense	c.1118	p.R373H	0.978	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613				153	0	0	68	36	34.6154
TUBAL3	0	genome.wustl.edu	37	10	5437355	5437355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	5437355	5437355	C	T	SNP	TUBAL3	ENST00000380419	human	ensembl	74_37	-1	known	missense	c.331	p.A111T	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBAL3	HGNC	ENSG00000178462				266	0	0	70	35	33.3333
PFKFB3	0	genome.wustl.edu	37	10	6262768	6262768	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	6262768	6262768	C	T	SNP	PFKFB3	ENST00000540253	human	ensembl	74_37	+1	known	silent	c.813	p.N271	0.940	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB3	HGNC	ENSG00000170525				171	1	0.581395	61	15	19.7368
PFKFB3	0	genome.wustl.edu	37	10	6266162	6266162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	6266162	6266162	C	T	SNP	PFKFB3	ENST00000540253	human	ensembl	74_37	+1	known	missense	c.1369	p.R457W	1.000	pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB3	HGNC	ENSG00000170525				85	0	0	38	10	20.8333
TMEM26	0	genome.wustl.edu	37	10	63191022	63191022	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	63191022	63191022	C	T	SNP	TMEM26	ENST00000399298	human	ensembl	74_37	-1	known	silent	c.339	p.L113	0.000	pfam_Transmembrane_26	pfam_Transmembrane_26	-	no_errors	TMEM26	HGNC	ENSG00000196932				151	0	0	49	16	24.6154
JMJD1C	0	genome.wustl.edu	37	10	64966870	64966870	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	64966870	64966870	C	T	SNP	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	missense	c.4559	p.S1520N	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				172	1	0.578035	88	36	29.0323
CTNNA3	0	genome.wustl.edu	37	10	68138968	68138968	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	68138968	68138968	G	A	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	silent	c.1674	p.Y558	0.923	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				170	0	0	60	18	23.0769
DDX21	0	genome.wustl.edu	37	10	70730038	70730038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	70730038	70730038	C	T	SNP	DDX21	ENST00000354185	human	ensembl	74_37	+1	known	missense	c.1318	p.R440C	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732				78	0	0	32	20	38.4615
SRGN	0	genome.wustl.edu	37	10	70864040	70864040	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	70864040	70864040	A	G	SNP	SRGN	ENST00000462445	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	SRGN	HGNC	ENSG00000122862				12	0	0	8	6	42.8571
TSPAN15	0	genome.wustl.edu	37	10	71243576	71243576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	71243576	71243576	G	A	SNP	TSPAN15	ENST00000373290	human	ensembl	74_37	+1	known	missense	c.226	p.V76I	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN15	HGNC	ENSG00000099282				122	0	0	41	14	25.4545
C10orf35	0	genome.wustl.edu	37	10	71392706	71392706	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	71392706	71392706	T	C	SNP	C10orf35	ENST00000373279	human	ensembl	74_37	+1	known	missense	c.257	p.V86A	0.997	NULL	NULL	-	no_errors	C10orf35	HGNC	ENSG00000171224				122	0	0	57	22	27.8481
UNC5B	0	genome.wustl.edu	37	10	73053236	73053236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	73053236	73053236	G	A	SNP	UNC5B	ENST00000335350	human	ensembl	74_37	+1	known	missense	c.1847	p.R616H	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Ig_I-set,pfam_Death_domain,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5B	HGNC	ENSG00000107731				215	1	0.462963	51	19	27.1429
SLC29A3	0	genome.wustl.edu	37	10	73115851	73115851	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	73115851	73115851	C	T	SNP	SLC29A3	ENST00000373189	human	ensembl	74_37	+1	known	silent	c.624	p.G208	0.050	pfam_Eqnu_transpt,prints_Eqnu_transpt	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246				188	0	0	47	12	20.339
CDH23	0	genome.wustl.edu	37	10	73558151	73558151	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	73558151	73558151	G	A	SNP	CDH23	ENST00000398788	human	ensembl	74_37	+1	known	silent	c.150	p.T50	0.074	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				115	0	0	47	15	24.1935
USP54	0	genome.wustl.edu	37	10	75277357	75277357	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	75277357	75277357	G	T	SNP	USP54	ENST00000339859	human	ensembl	74_37	-1	known	missense	c.2827	p.P943T	0.512	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP54	HGNC	ENSG00000166348				84	0	0	36	16	30.7692
USP54	0	genome.wustl.edu	37	10	75290072	75290072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	75290072	75290072	G	A	SNP	USP54	ENST00000339859	human	ensembl	74_37	-1	known	missense	c.1657	p.R553C	0.009	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP54	HGNC	ENSG00000166348				111	0	0	53	16	23.1884
ZSWIM8	0	genome.wustl.edu	37	10	75557339	75557339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	75557339	75557339	G	A	SNP	ZSWIM8	ENST00000398706	human	ensembl	74_37	+1	known	missense	c.3638	p.R1213Q	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM8	HGNC	ENSG00000214655				107	0	0	42	14	25
KAT6B	0	genome.wustl.edu	37	10	76741753	76741753	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	76741753	76741753	C	T	SNP	KAT6B	ENST00000490365	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	KAT6B	HGNC	ENSG00000156650				25	0	0	11	14	56
KAT6B	0	genome.wustl.edu	37	10	76788343	76788343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	76788343	76788343	G	A	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	missense	c.3761	p.R1254H	0.876	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				171	0	0	55	24	30.3797
KAT6B	0	genome.wustl.edu	37	10	76789861	76789861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	76789861	76789861	C	T	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	missense	c.5279	p.P1760L	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				60	0	0	34	15	30.6122
POLR3A	0	genome.wustl.edu	37	10	79741973	79741973	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	79741973	79741973	C	T	SNP	POLR3A	ENST00000372371	human	ensembl	74_37	-1	known	missense	c.3698	p.R1233Q	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606				84	0	0	44	31	41.3333
CCSER2	0	genome.wustl.edu	37	10	86273259	86273259	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	86273259	86273259	G	T	SNP	CCSER2	ENST00000372088	human	ensembl	74_37	+1	known	nonsense	c.2380	p.G794*	1.000	NULL	NULL	-	no_errors	CCSER2	HGNC	ENSG00000107771				123	0	0	41	13	24.0741
GRID1	0	genome.wustl.edu	37	10	87898668	87898668	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	87898668	87898668	T	A	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	missense	c.634	p.M212L	0.996	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771				301	0	0	100	41	29.078
NUTM2A	0	genome.wustl.edu	37	10	88994221	88994221	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	88994221	88994221	A	G	SNP	NUTM2A	ENST00000381707	human	ensembl	74_37	+1	known	missense	c.2393	p.H798R	0.000	NULL	NULL	-	no_errors	NUTM2A	HGNC	ENSG00000184923				65	0	0	32	14	30.4348
IFIT3	0	genome.wustl.edu	37	10	91098638	91098638	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	91098638	91098638	C	T	SNP	IFIT3	ENST00000371811	human	ensembl	74_37	+1	known	nonsense	c.226	p.Q76*	0.192	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT3	HGNC	ENSG00000119917				128	0	0	62	31	33.3333
TUBB8	0	genome.wustl.edu	37	10	93798	93798	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	93798	93798	G	A	SNP	TUBB8	ENST00000309812	human	ensembl	74_37	-1	known	silent	c.534	p.T178	0.990	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876				205	0	0	61	25	29.0698
EXOC6	0	genome.wustl.edu	37	10	94818016	94818016	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	94818016	94818016	T	C	SNP	EXOC6	ENST00000371547	human	ensembl	74_37	+1	known	silent	c.2367	p.A789	0.994	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190				73	0	0	34	12	26.087
CRTAC1	0	genome.wustl.edu	37	10	99696002	99696002	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	99696002	99696002	C	T	SNP	CRTAC1	ENST00000370597	human	ensembl	74_37	-1	known	missense	c.346	p.G116R	1.000	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	-	no_errors	CRTAC1	HGNC	ENSG00000095713				94	0	0	33	10	23.2558
BIRC3	0	genome.wustl.edu	37	11	102195543	102195543	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	102195543	102195543	C	T	SNP	BIRC3	ENST00000263464	human	ensembl	74_37	+1	known	silent	c.303	p.S101	0.000	NULL	pfam_BIR,pfam_CARD,superfamily_DEATH-like_dom,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC3	HGNC	ENSG00000023445				284	1	0.350877	128	64	33.3333
MMP12	0	genome.wustl.edu	37	11	102736573	102736573	+	RNA	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	102736573	102736573	A	T	SNP	MMP12	ENST00000326227	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MMP12	HGNC	ENSG00000110347				59	0	0	17	10	37.037
MUC6	0	genome.wustl.edu	37	11	1031856	1031856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	1031856	1031856	C	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.313	p.V105I	0.001	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				34	0	0	17	10	37.037
DDI1	0	genome.wustl.edu	37	11	103908557	103908557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	103908557	103908557	G	A	SNP	DDI1	ENST00000302259	human	ensembl	74_37	+1	known	missense	c.1007	p.R336Q	1.000	pfam_Peptidase_aspartic_DDI1-type,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,pfam_Ubiquitin_dom,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967				181	0	0	62	23	27.0588
CASP4	0	genome.wustl.edu	37	11	104820375	104820375	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	104820375	104820375	G	T	SNP	CASP4	ENST00000444739	human	ensembl	74_37	-1	known	missense	c.676	p.P226T	0.037	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP4	HGNC	ENSG00000196954				166	0	0	89	29	24.5763
MUC2	0	genome.wustl.edu	37	11	1078296	1078296	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	1078296	1078296	A	G	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	missense	c.583	p.N195D	1.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				142	0	0	40	15	27.2727
CTR9	0	genome.wustl.edu	37	11	10789974	10789974	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	10789974	10789974	A	T	SNP	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	missense	c.2045	p.D682V	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				94	0	0	44	13	22.807
ALG9	0	genome.wustl.edu	37	11	111657215	111657215	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	111657215	111657215	A	T	SNP	ALG9	ENST00000531154	human	ensembl	74_37	-1	known	missense	c.1250	p.V417D	0.994	NULL	pfam_GPI_mannosylTrfase	-	no_errors	ALG9	HGNC	ENSG00000086848				124	0	0	46	20	30.303
NCAM1	0	genome.wustl.edu	37	11	113075136	113075136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	113075136	113075136	G	A	SNP	NCAM1	ENST00000316851	human	ensembl	74_37	+1	known	missense	c.226	p.A76T	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM1	HGNC	ENSG00000149294				94	0	0	29	13	30.9524
HTR3A	0	genome.wustl.edu	37	11	113860304	113860304	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	113860304	113860304	T	C	SNP	HTR3A	ENST00000355556	human	ensembl	74_37	+1	known	missense	c.1370	p.L457P	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A,prints_5HT3_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	HTR3A	HGNC	ENSG00000166736				151	0	0	57	32	35.9551
ZNF259	0	genome.wustl.edu	37	11	116658284	116658284	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	116658284	116658284	A	C	SNP	ZNF259	ENST00000227322	human	ensembl	74_37	-1	known	missense	c.247	p.C83G	1.000	pfam_Znf_ZPR1,smart_Znf_ZPR1,tigrfam_Znf_ZPR1	pfam_Znf_ZPR1,smart_Znf_ZPR1,tigrfam_Znf_ZPR1	-	no_errors	ZNF259	HGNC	ENSG00000109917				113	0	0	35	16	31.3725
TMPRSS13	0	genome.wustl.edu	37	11	117789464	117789464	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	117789464	117789464	G	T	SNP	TMPRSS13	ENST00000445164	human	ensembl	74_37	-1	known	silent	c.111	p.A37	0.001	pirsf_Peptidase_S1A_TMPRSS13	pirsf_Peptidase_S1A_TMPRSS13,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SRCR,pfscan_Peptidase_S1	-	no_errors	TMPRSS13	HGNC	ENSG00000137747				109	0	0	37	22	37.2881
TRIM29	0	genome.wustl.edu	37	11	119993751	119993751	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	119993751	119993751	C	T	SNP	TRIM29	ENST00000341846	human	ensembl	74_37	-1	known	missense	c.1346	p.R449H	1.000	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699				140	0	0	54	18	25
TRIM29	0	genome.wustl.edu	37	11	119996467	119996467	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	119996467	119996467	C	T	SNP	TRIM29	ENST00000341846	human	ensembl	74_37	-1	known	missense	c.1265	p.R422H	0.998	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699				79	0	0	44	4	8.33333
TRIM29	0	genome.wustl.edu	37	11	120008538	120008538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	120008538	120008538	C	T	SNP	TRIM29	ENST00000341846	human	ensembl	74_37	-1	known	missense	c.202	p.A68T	0.064	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699				286	0	0	100	53	34.6405
TRIM29	0	genome.wustl.edu	37	11	120008669	120008669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	120008669	120008669	C	T	SNP	TRIM29	ENST00000341846	human	ensembl	74_37	-1	known	missense	c.71	p.G24D	0.813	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699				62	0	0	32	16	33.3333
TECTA	0	genome.wustl.edu	37	11	121038848	121038848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	121038848	121038848	C	T	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.5672	p.T1891M	1.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				215	0	0	71	38	34.8624
SORL1	0	genome.wustl.edu	37	11	121495927	121495927	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	121495927	121495927	T	C	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	missense	c.6305	p.L2102P	0.985	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				166	0	0	60	23	27.7108
MUC5AC	0	genome.wustl.edu	37	11	1215389	1215389	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	1215389	1215389	T	C	SNP	MUC5AC	ENST00000358378	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	MUC5AC	HGNC	ENSG00000215182				77	0	0	26	15	36.5854
MICAL2	0	genome.wustl.edu	37	11	12234929	12234929	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	12234929	12234929	A	T	SNP	MICAL2	ENST00000256194	human	ensembl	74_37	+1	known	missense	c.819	p.K273N	0.984	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL2	HGNC	ENSG00000133816				271	0	0	63	32	33.6842
BSX	0	genome.wustl.edu	37	11	122848477	122848477	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	122848477	122848477	G	A	SNP	BSX	ENST00000343035	human	ensembl	74_37	-1	known	silent	c.582	p.A194	0.013	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	BSX	HGNC	ENSG00000188909				49	0	0	14	8	36.3636
GRAMD1B	0	genome.wustl.edu	37	11	123484322	123484322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	123484322	123484322	C	T	SNP	GRAMD1B	ENST00000322282	human	ensembl	74_37	+1	known	missense	c.1754	p.T585M	0.997	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171				61	0	0	23	7	23.3333
OR8B12	0	genome.wustl.edu	37	11	124413368	124413368	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	124413368	124413368	G	A	SNP	OR8B12	ENST00000306842	human	ensembl	74_37	-1	known	silent	c.183	p.F61	1.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B12	HGNC	ENSG00000170953				121	0	0	57	18	24
PUS3	0	genome.wustl.edu	37	11	125763900	125763900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	125763900	125763900	C	T	SNP	PUS3	ENST00000227474	human	ensembl	74_37	-1	known	missense	c.1226	p.R409H	1.000	NULL	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	-	no_errors	PUS3	HGNC	ENSG00000110060				202	0	0	83	37	30.8333
MUC5B	0	genome.wustl.edu	37	11	1265384	1265384	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	1265384	1265384	T	C	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.7283	p.M2428T	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				98	0	0	59	11	15.7143
KCNJ5	0	genome.wustl.edu	37	11	128786370	128786370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	128786370	128786370	C	T	SNP	KCNJ5	ENST00000529694	human	ensembl	74_37	+1	known	missense	c.1004	p.P335L	0.999	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.4	-	no_errors	KCNJ5	HGNC	ENSG00000120457				212	0	0	77	26	25.2427
OPCML	0	genome.wustl.edu	37	11	132306587	132306587	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	132306587	132306587	T	C	SNP	OPCML	ENST00000541867	human	ensembl	74_37	-1	known	missense	c.751	p.M251V	0.011	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	OPCML	HGNC	ENSG00000183715				77	0	0	31	14	31.1111
ARNTL	0	genome.wustl.edu	37	11	13393879	13393879	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	13393879	13393879	C	T	SNP	ARNTL	ENST00000403290	human	ensembl	74_37	+1	known	silent	c.990	p.N330	0.406	smart_PAS	pfam_PAS_fold,pfam_PAS_fold_3,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794				109	1	0.909091	46	24	34.2857
JAM3	0	genome.wustl.edu	37	11	134019044	134019044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	134019044	134019044	G	A	SNP	JAM3	ENST00000529443	human	ensembl	74_37	+1	known	missense	c.1036	p.D346N	0.941	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	JAM3	HGNC	ENSG00000166086				44	0	0	26	7	21.2121
GLB1L3	0	genome.wustl.edu	37	11	134179653	134179653	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	134179653	134179653	C	A	SNP	GLB1L3	ENST00000431683	human	ensembl	74_37	+1	known	missense	c.1095	p.S365R	1.000	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105				28	0	0	10	9	47.3684
PTH	0	genome.wustl.edu	37	11	13514363	13514363	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	13514363	13514363	T	C	SNP	PTH	ENST00000282091	human	ensembl	74_37	-1	known	missense	c.40	p.M14V	1.000	pfam_PTH/PTH-rel,pirsf_PTH	pfam_PTH/PTH-rel,smart_PTH/PTH-rel,pirsf_PTH	-	no_errors	PTH	HGNC	ENSG00000152266				59	0	0	24	13	35.1351
KRTAP5-4	0	genome.wustl.edu	37	11	1643096	1643096	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	1643096	1643096	G	A	SNP	KRTAP5-4	ENST00000399682	human	ensembl	74_37	-1	known	silent	c.228	p.G76	0.274	NULL	NULL	-	no_errors	KRTAP5-4	HGNC	ENSG00000241598				316	1	0.315457	71	18	20.2247
PLEKHA7	0	genome.wustl.edu	37	11	16837793	16837793	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	16837793	16837793	G	A	SNP	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	nonsense	c.1885	p.R629*	1.000	NULL	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689				51	0	0	17	7	29.1667
USH1C	0	genome.wustl.edu	37	11	17531058	17531058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	17531058	17531058	G	A	SNP	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	missense	c.1858	p.R620C	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611				82	0	0	24	12	33.3333
TNNI2	0	genome.wustl.edu	37	11	1861852	1861852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	1861852	1861852	C	T	SNP	TNNI2	ENST00000252898	human	ensembl	74_37	+1	known	missense	c.152	p.P51L	0.770	pfam_Troponin	pfam_Troponin	-	no_errors	TNNI2	HGNC	ENSG00000130598				82	0	0	27	10	27.027
NAV2	0	genome.wustl.edu	37	11	20122554	20122554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	20122554	20122554	G	A	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.6430	p.V2144I	1.000	superfamily_P-loop_NTPase	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				250	0	0	60	26	30.2326
NAV2	0	genome.wustl.edu	37	11	20136150	20136150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	20136150	20136150	C	T	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.7150	p.R2384C	1.000	superfamily_P-loop_NTPase	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				72	0	0	27	7	20.5882
SLC6A5	0	genome.wustl.edu	37	11	20628625	20628625	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	20628625	20628625	T	C	SNP	SLC6A5	ENST00000525748	human	ensembl	74_37	+1	known	missense	c.752	p.L251P	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970				70	0	0	21	15	41.6667
MUC15	0	genome.wustl.edu	37	11	26586992	26586992	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	26586992	26586992	G	A	SNP	MUC15	ENST00000436318	human	ensembl	74_37	-1	known	silent	c.495	p.P165	0.000	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550				215	0	0	82	36	30.5085
LGR4	0	genome.wustl.edu	37	11	27389978	27389978	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	27389978	27389978	C	T	SNP	LGR4	ENST00000379214	human	ensembl	74_37	-1	known	silent	c.2292	p.A764	0.145	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_7TM,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213				180	0	0	69	39	36.1111
LGR4	0	genome.wustl.edu	37	11	27403790	27403790	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	27403790	27403790	T	C	SNP	LGR4	ENST00000379214	human	ensembl	74_37	-1	known	missense	c.703	p.N235D	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_7TM,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213				79	0	0	22	19	46.3415
ATHL1	0	genome.wustl.edu	37	11	292922	292922	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	292922	292922	G	A	SNP	ATHL1	ENST00000409548	human	ensembl	74_37	+1	known	missense	c.1195	p.V399M	0.982	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102				78	0	0	39	12	23.5294
ATHL1	0	genome.wustl.edu	37	11	293077	293077	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	293077	293077	G	A	SNP	ATHL1	ENST00000409479	human	ensembl	74_37	+1	novel	silent	c.1266	p.T422	0.007	superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102				138	0	0	56	27	32.5301
DCDC1	0	genome.wustl.edu	37	11	31327282	31327282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	31327282	31327282	C	T	SNP	DCDC1	ENST00000452803	human	ensembl	74_37	-1	known	missense	c.634	p.A212T	0.866	pfscan_Doublecortin_dom	pfscan_Doublecortin_dom	-	no_errors	DCDC1	HGNC	ENSG00000170959				139	0	0	53	16	23.1884
PAX6	0	genome.wustl.edu	37	11	31822335	31822335	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	31822335	31822335	A	G	SNP	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	missense	c.469	p.Y157H	1.000	NULL	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372				122	0	0	57	18	24
CAT	0	genome.wustl.edu	37	11	34489885	34489885	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	34489885	34489885	G	A	SNP	CAT	ENST00000241052	human	ensembl	74_37	+1	known	silent	c.1377	p.L459	0.999	pfam_Catalase_immune_responsive,superfamily_Catalase-like_dom	pfam_Catalase_core,pfam_Catalase_immune_responsive,superfamily_Catalase-like_dom,prints_Catalase	-	no_errors	CAT	HGNC	ENSG00000121691				203	0	0	70	36	33.9623
EHF	0	genome.wustl.edu	37	11	34668230	34668230	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	34668230	34668230	C	T	SNP	EHF	ENST00000257831	human	ensembl	74_37	+1	known	silent	c.342	p.N114	0.496	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	EHF	HGNC	ENSG00000135373				286	0	0	99	38	27.7372
NUP98	0	genome.wustl.edu	37	11	3697519	3697519	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	3697519	3697519	G	T	SNP	NUP98	ENST00000324932	human	ensembl	74_37	-1	known	missense	c.5273	p.P1758H	0.998	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713				166	0	0	53	22	29.3333
LRRC4C	0	genome.wustl.edu	37	11	40136717	40136717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	40136717	40136717	G	A	SNP	LRRC4C	ENST00000527150	human	ensembl	74_37	-1	known	missense	c.1126	p.R376W	0.998	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	LRRC4C	HGNC	ENSG00000148948				131	0	0	79	18	18.5567
STIM1	0	genome.wustl.edu	37	11	4112898	4112898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	4112898	4112898	G	A	SNP	STIM1	ENST00000300737	human	ensembl	74_37	+1	known	missense	c.1928	p.R643H	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323				141	0	0	51	27	34.6154
HSD17B12	0	genome.wustl.edu	37	11	43861602	43861602	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	43861602	43861602	C	T	SNP	HSD17B12	ENST00000278353	human	ensembl	74_37	+1	known	silent	c.672	p.G224	1.000	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B12	HGNC	ENSG00000149084				88	0	0	36	15	29.4118
TRIM21	0	genome.wustl.edu	37	11	4406849	4406849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	4406849	4406849	C	T	SNP	TRIM21	ENST00000254436	human	ensembl	74_37	-1	known	missense	c.1094	p.R365K	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Ubox_domain,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM21	HGNC	ENSG00000132109				30	0	0	10	3	23.0769
ALX4	0	genome.wustl.edu	37	11	44286458	44286458	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	44286458	44286458	C	T	SNP	ALX4	ENST00000329255	human	ensembl	74_37	-1	known	silent	c.1182	p.A394	0.411	pfam_OAR_dom,pfscan_OAR_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX4	HGNC	ENSG00000052850				66	0	0	25	12	32.4324
PRDM11	0	genome.wustl.edu	37	11	45204538	45204538	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	45204538	45204538	T	C	SNP	PRDM11	ENST00000263765	human	ensembl	74_37	+1	known	missense	c.452	p.M151T	1.000	NULL	pfscan_SET_dom	-	no_errors	PRDM11	HGNC	ENSG00000019485				93	0	0	27	16	37.2093
CHST1	0	genome.wustl.edu	37	11	45672017	45672017	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	45672017	45672017	G	A	SNP	CHST1	ENST00000308064	human	ensembl	74_37	-1	known	missense	c.457	p.R153C	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264				107	0	0	32	20	38.4615
F2	0	genome.wustl.edu	37	11	46749689	46749689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	46749689	46749689	G	A	SNP	F2	ENST00000311907	human	ensembl	74_37	+1	known	missense	c.1274	p.R425H	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Prothrombin/thrombin,pfscan_Peptidase_S1,prints_Prothrombin/thrombin	pfam_Peptidase_S1,pfam_Kringle,pfam_Thrombin_light_chain,pfam_GLA_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,superfamily_GLA_domain,smart_GLA_domain,smart_Kringle,smart_Peptidase_S1,pirsf_Prothrombin/thrombin,pfscan_GLA_domain,pfscan_Kringle,pfscan_Peptidase_S1,prints_Prothrombin/thrombin,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F2	HGNC	ENSG00000180210				19	0	0	7	4	36.3636
C11orf49	0	genome.wustl.edu	37	11	47159253	47159253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	47159253	47159253	C	T	SNP	C11orf49	ENST00000378615	human	ensembl	74_37	+1	known	missense	c.338	p.P113L	0.992	NULL	NULL	-	no_errors	C11orf49	HGNC	ENSG00000149179				105	0	0	40	17	29.8246
MADD	0	genome.wustl.edu	37	11	47308066	47308066	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	47308066	47308066	G	A	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	silent	c.2634	p.T878	0.015	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				179	0	0	67	27	28.7234
CELF1	0	genome.wustl.edu	37	11	47493853	47493853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	47493853	47493853	C	T	SNP	CELF1	ENST00000532048	human	ensembl	74_37	-1	known	missense	c.1468	p.G490S	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF1	HGNC	ENSG00000149187				273	0	0	113	50	30.6748
OR52R1	0	genome.wustl.edu	37	11	4825233	4825233	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	4825233	4825233	G	A	SNP	OR52R1	ENST00000380382	human	ensembl	74_37	-1	known	silent	c.615	p.Y205	0.991	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937				132	0	0	56	36	39.1304
OR52D1	0	genome.wustl.edu	37	11	5510846	5510846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	5510846	5510846	C	T	SNP	OR52D1	ENST00000322641	human	ensembl	74_37	+1	known	missense	c.910	p.R304W	0.001	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52D1	HGNC	ENSG00000181609				110	0	0	31	13	29.5455
OR4A15	0	genome.wustl.edu	37	11	55136189	55136189	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	55136189	55136189	T	A	SNP	OR4A15	ENST00000314706	human	ensembl	74_37	+1	known	nonsense	c.830	p.L277*	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A15	HGNC	ENSG00000181958				296	0	0	178	19	9.64467
OR8K5	0	genome.wustl.edu	37	11	55926924	55926924	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	55926924	55926924	G	C	SNP	OR8K5	ENST00000313447	human	ensembl	74_37	-1	known	nonsense	c.870	p.Y290*	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K5	HGNC	ENSG00000181752				105	0	0	43	15	25.8621
TRIM6	0	genome.wustl.edu	37	11	5632636	5632636	+	RNA	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	5632636	5632636	C	A	SNP	TRIM6	ENST00000481603	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM6	HGNC	ENSG00000121236				68	0	0	44	12	21.4286
CCDC86	0	genome.wustl.edu	37	11	60609936	60609936	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	60609936	60609936	C	T	SNP	CCDC86	ENST00000227520	human	ensembl	74_37	+1	known	silent	c.339	p.S113	0.908	NULL	NULL	-	no_errors	CCDC86	HGNC	ENSG00000110104				168	0	0	60	17	22.0779
MYRF	0	genome.wustl.edu	37	11	61533538	61533538	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	61533538	61533538	A	G	SNP	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	silent	c.243	p.G81	0.995	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				17	0	0	4	7	63.6364
FADS3	0	genome.wustl.edu	37	11	61646235	61646235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	61646235	61646235	C	T	SNP	FADS3	ENST00000278829	human	ensembl	74_37	-1	known	missense	c.607	p.V203M	0.998	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS3	HGNC	ENSG00000221968				76	0	0	25	11	30.5556
EML3	0	genome.wustl.edu	37	11	62376111	62376111	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	62376111	62376111	A	G	SNP	EML3	ENST00000529309	human	ensembl	74_37	-1	known	missense	c.1013	p.V338A	0.999	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_HELP,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML3	HGNC	ENSG00000149499				276	1	0.361011	91	62	40.5229
FAM160A2	0	genome.wustl.edu	37	11	6239917	6239917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	6239917	6239917	C	T	SNP	FAM160A2	ENST00000265978	human	ensembl	74_37	-1	known	missense	c.1348	p.A450T	1.000	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009				188	0	0	72	34	32.0755
FLRT1	0	genome.wustl.edu	37	11	63884684	63884684	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	63884684	63884684	C	T	SNP	FLRT1	ENST00000246841	human	ensembl	74_37	+1	known	silent	c.945	p.D315	0.049	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT1	HGNC	ENSG00000126500				65	0	0	29	7	19.4444
FERMT3	0	genome.wustl.edu	37	11	63987936	63987936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	63987936	63987936	G	A	SNP	FERMT3	ENST00000279227	human	ensembl	74_37	+1	known	missense	c.1352	p.G451D	1.000	pfam_FERM_central,pfam_Pleckstrin_homology,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_FERM_central,pfam_Pleckstrin_homology,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT3	HGNC	ENSG00000149781				23	0	0	30	15	33.3333
NRXN2	0	genome.wustl.edu	37	11	64390437	64390437	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	64390437	64390437	G	T	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.3961	p.L1321M	1.000	pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				27	0	0	12	4	25
NRXN2	0	genome.wustl.edu	37	11	64397897	64397897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	64397897	64397897	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.3734	p.P1245L	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				109	0	0	27	14	34.1463
EHD1	0	genome.wustl.edu	37	11	64622217	64622217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	64622217	64622217	C	T	SNP	EHD1	ENST00000320631	human	ensembl	74_37	-1	known	missense	c.1193	p.R398Q	1.000	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047				378	0	0	136	48	26.087
TRIM3	0	genome.wustl.edu	37	11	6478933	6478933	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	6478933	6478933	G	A	SNP	TRIM3	ENST00000345851	human	ensembl	74_37	-1	known	missense	c.508	p.R170C	1.000	smart_Bbox_C	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM3	HGNC	ENSG00000110171				106	0	0	60	4	6.25
DPF2	0	genome.wustl.edu	37	11	65108459	65108459	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	65108459	65108459	C	T	SNP	DPF2	ENST00000528416	human	ensembl	74_37	+1	known	silent	c.216	p.Y72	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_C2H2-like,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2	-	no_errors	DPF2	HGNC	ENSG00000133884				40	0	0	26	11	29.7297
MALAT1	0	genome.wustl.edu	37	11	65267838	65267838	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	65267838	65267838	T	C	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				68	0	0	23	12	34.2857
LTBP3	0	genome.wustl.edu	37	11	65308389	65308389	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	65308389	65308389	T	C	SNP	LTBP3	ENST00000301873	human	ensembl	74_37	-1	known	missense	c.2930	p.Y977C	1.000	superfamily_TB_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP3	HGNC	ENSG00000168056				43	0	0	16	8	33.3333
EHBP1L1	0	genome.wustl.edu	37	11	65350555	65350555	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	65350555	65350555	A	G	SNP	EHBP1L1	ENST00000309295	human	ensembl	74_37	+1	known	silent	c.2412	p.S804	0.026	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442				83	0	0	20	10	33.3333
CARNS1	0	genome.wustl.edu	37	11	67191150	67191150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	67191150	67191150	C	T	SNP	CARNS1	ENST00000445895	human	ensembl	74_37	+1	known	missense	c.1931	p.A644V	0.170	pfscan_ATP-grasp	superfamily_PreATP-grasp_dom,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508				12	0	0	8	5	38.4615
FAM86C2P	0	genome.wustl.edu	37	11	67560517	67560517	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	67560517	67560517	T	C	SNP	FAM86C2P	ENST00000528089	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	FAM86C2P	HGNC	ENSG00000160172				15	0	0	18	3	14.2857
ALDH3B1	0	genome.wustl.edu	37	11	67789245	67789245	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	67789245	67789245	T	C	SNP	ALDH3B1	ENST00000007633	human	ensembl	74_37	+1	known	missense	c.851	p.I284T	1.000	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3B1	HGNC	ENSG00000006534				250	0	0	81	32	28.3186
DEAF1	0	genome.wustl.edu	37	11	679801	679801	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	679801	679801	G	A	SNP	DEAF1	ENST00000382409	human	ensembl	74_37	-1	known	missense	c.1013	p.S338L	0.991	NULL	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030				53	0	0	29	14	32.5581
MTL5	0	genome.wustl.edu	37	11	68517988	68517988	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	68517988	68517988	G	A	SNP	MTL5	ENST00000255087	human	ensembl	74_37	-1	known	silent	c.141	p.H47	0.185	NULL	pfam_CRC,superfamily_Thionin	-	no_errors	MTL5	HGNC	ENSG00000132749				22	0	0	4	5	55.5556
OR2D3	0	genome.wustl.edu	37	11	6942872	6942872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	6942872	6942872	G	A	SNP	OR2D3	ENST00000317834	human	ensembl	74_37	+1	known	missense	c.640	p.A214T	0.992	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2D3	HGNC	ENSG00000178358				74	0	0	54	16	22.8571
SHANK2	0	genome.wustl.edu	37	11	70338495	70338495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	70338495	70338495	G	A	SNP	SHANK2	ENST00000338508	human	ensembl	74_37	-1	known	missense	c.2387	p.A796V	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105				75	0	0	29	16	35.5556
DHCR7	0	genome.wustl.edu	37	11	71146749	71146749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	71146749	71146749	C	T	SNP	DHCR7	ENST00000355527	human	ensembl	74_37	-1	known	missense	c.1100	p.R367H	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24	-	no_errors	DHCR7	HGNC	ENSG00000172893				66	0	0	30	7	18.9189
KRTAP5-10	0	genome.wustl.edu	37	11	71276739	71276739	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	71276739	71276739	G	T	SNP	KRTAP5-10	ENST00000398531	human	ensembl	74_37	+1	known	missense	c.106	p.G36W	1.000	NULL	NULL	-	no_errors	KRTAP5-10	HGNC	ENSG00000204572				261	0	0	69	37	34.9057
NUMA1	0	genome.wustl.edu	37	11	71726711	71726711	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	71726711	71726711	T	G	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	missense	c.1838	p.K613T	0.977	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				70	0	0	44	17	27.8689
PDE2A	0	genome.wustl.edu	37	11	72295937	72295937	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	72295937	72295937	G	A	SNP	PDE2A	ENST00000334456	human	ensembl	74_37	-1	known	silent	c.1338	p.D446	0.324	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642				107	0	0	38	8	17.3913
PDE2A	0	genome.wustl.edu	37	11	72385209	72385209	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	72385209	72385209	G	A	SNP	PDE2A	ENST00000334456	human	ensembl	74_37	-1	known	nonsense	c.43	p.Q15*	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642				50	0	0	16	6	27.2727
ARHGEF17	0	genome.wustl.edu	37	11	73020660	73020660	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	73020660	73020660	G	T	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	missense	c.977	p.S326I	0.764	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				198	0	0	64	27	29.6703
ARHGEF17	0	genome.wustl.edu	37	11	73021304	73021304	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	73021304	73021304	C	A	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	missense	c.1621	p.L541M	0.091	superfamily_Vinculin/catenin	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				86	0	0	36	19	34.5455
PPFIBP2	0	genome.wustl.edu	37	11	7663564	7663564	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	7663564	7663564	A	G	SNP	PPFIBP2	ENST00000299492	human	ensembl	74_37	+1	known	missense	c.1553	p.D518G	0.901	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387				63	0	0	29	6	17.1429
CAPN5	0	genome.wustl.edu	37	11	76831837	76831837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	76831837	76831837	G	A	SNP	CAPN5	ENST00000278559	human	ensembl	74_37	+1	known	missense	c.1369	p.V457I	0.999	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,pfam_C2_dom,superfamily_Calpain_domain_III,superfamily_C2_dom,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_C2_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN5	HGNC	ENSG00000149260				277	0	0	88	42	32.3077
FZD4	0	genome.wustl.edu	37	11	86662525	86662525	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	86662525	86662525	T	C	SNP	FZD4	ENST00000531380	human	ensembl	74_37	-1	known	missense	c.1273	p.T425A	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD4	HGNC	ENSG00000174804				215	0	0	88	34	27.8689
TMEM135	0	genome.wustl.edu	37	11	87029231	87029231	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	87029231	87029231	C	T	SNP	TMEM135	ENST00000305494	human	ensembl	74_37	+1	known	missense	c.1130	p.A377V	1.000	NULL	NULL	-	no_errors	TMEM135	HGNC	ENSG00000166575				154	0	0	52	14	21.2121
FAT3	0	genome.wustl.edu	37	11	92531574	92531574	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	92531574	92531574	C	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	silent	c.5395	p.R1799	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				32	0	0	18	8	30.7692
FAT3	0	genome.wustl.edu	37	11	92577235	92577235	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	92577235	92577235	G	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.10702	p.G3568W	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				297	0	0	129	52	28.7293
FAT3	0	genome.wustl.edu	37	11	92623907	92623907	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	92623907	92623907	G	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	silent	c.13398	p.L4466	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				33	0	0	20	5	20
WNK1	0	genome.wustl.edu	37	12	1009685	1009685	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	1009685	1009685	G	A	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	silent	c.7986	p.Q2662	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				264	0	0	140	55	28.2051
SLC5A8	0	genome.wustl.edu	37	12	101588916	101588916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	101588916	101588916	G	A	SNP	SLC5A8	ENST00000536262	human	ensembl	74_37	-1	known	missense	c.494	p.A165V	0.986	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A8	HGNC	ENSG00000256870				67	0	0	32	8	20
MYBPC1	0	genome.wustl.edu	37	12	102041875	102041875	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	102041875	102041875	G	A	SNP	MYBPC1	ENST00000361466	human	ensembl	74_37	+1	known	silent	c.1143	p.G381	0.978	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC1	HGNC	ENSG00000196091				125	0	0	56	19	25.3333
GNPTAB	0	genome.wustl.edu	37	12	102164271	102164271	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	102164271	102164271	C	T	SNP	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	nonsense	c.1026	p.W342*	1.000	pfam_DUF3184	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				56	0	0	33	29	46.7742
STAB2	0	genome.wustl.edu	37	12	104152955	104152955	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	104152955	104152955	C	T	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	silent	c.7152	p.S2384	0.014	superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				179	0	0	93	23	19.8276
GLT8D2	0	genome.wustl.edu	37	12	104388188	104388188	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	104388188	104388188	A	T	SNP	GLT8D2	ENST00000360814	human	ensembl	74_37	-1	known	missense	c.692	p.I231N	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D2	HGNC	ENSG00000120820				79	0	0	43	12	21.8182
SLC41A2	0	genome.wustl.edu	37	12	105321865	105321865	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	105321865	105321865	C	T	SNP	SLC41A2	ENST00000258538	human	ensembl	74_37	-1	known	silent	c.441	p.V147	0.000	NULL	pfam_SLC41_membr_dom	-	no_errors	SLC41A2	HGNC	ENSG00000136052				159	0	0	104	28	21.2121
NUAK1	0	genome.wustl.edu	37	12	106460837	106460837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	106460837	106460837	C	T	SNP	NUAK1	ENST00000261402	human	ensembl	74_37	-1	known	missense	c.1729	p.V577M	0.994	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590				53	0	0	51	13	20.3125
FICD	0	genome.wustl.edu	37	12	108912632	108912632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	108912632	108912632	G	A	SNP	FICD	ENST00000552695	human	ensembl	74_37	+1	known	missense	c.757	p.V253M	1.000	NULL	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855				59	0	0	35	30	46.1538
MYO1H	0	genome.wustl.edu	37	12	109826583	109826583	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	109826583	109826583	C	T	SNP	MYO1H	ENST00000431443	human	ensembl	74_37	+1	known	silent	c.60	p.D20	0.793	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527				412	0	0	134	120	47.2441
MYL2	0	genome.wustl.edu	37	12	111352095	111352095	+	Splice_Site	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	111352095	111352095	C	A	SNP	MYL2	ENST00000228841	human	ensembl	74_37	-1	known	splice_site	c.170-1	e4-1	1.000	-	-	-	no_errors	MYL2	HGNC	ENSG00000111245				61	0	0	33	9	21.4286
TAS2R19	0	genome.wustl.edu	37	12	11174710	11174710	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	11174710	11174710	C	T	SNP	TAS2R19	ENST00000390673	human	ensembl	74_37	-1	known	nonsense	c.461	p.W154*	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R19	HGNC	ENSG00000212124				151	0	0	71	59	45.3846
ACAD10	0	genome.wustl.edu	37	12	112184963	112184963	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	112184963	112184963	C	T	SNP	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	silent	c.2460	p.R820	0.996	superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271				63	0	0	34	14	29.1667
ALDH2	0	genome.wustl.edu	37	12	112221025	112221025	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	112221025	112221025	C	T	SNP	ALDH2	ENST00000261733	human	ensembl	74_37	+1	known	missense	c.283	p.R95C	0.998	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH2	HGNC	ENSG00000111275				219	0	0	104	24	18.75
TRAFD1	0	genome.wustl.edu	37	12	112590274	112590274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	112590274	112590274	G	A	SNP	TRAFD1	ENST00000257604	human	ensembl	74_37	+1	known	missense	c.1663	p.A555T	0.000	NULL	superfamily_TRAF-like	-	no_errors	TRAFD1	HGNC	ENSG00000135148				174	0	0	36	36	50
HECTD4	0	genome.wustl.edu	37	12	112622703	112622703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	112622703	112622703	C	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.9551	p.R3184H	0.998	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				77	0	0	41	12	22.6415
HECTD4	0	genome.wustl.edu	37	12	112688019	112688019	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	112688019	112688019	C	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	silent	c.3363	p.L1121	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				91	0	0	46	27	36.9863
DDX54	0	genome.wustl.edu	37	12	113600758	113600758	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	113600758	113600758	C	A	SNP	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	missense	c.2174	p.R725M	0.986	pfam_DBP10CT	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064				90	0	0	53	6	10.1695
RBM19	0	genome.wustl.edu	37	12	114296674	114296674	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	114296674	114296674	G	A	SNP	RBM19	ENST00000261741	human	ensembl	74_37	-1	known	silent	c.2586	p.R862	0.998	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965				79	0	0	29	12	29.2683
MED13L	0	genome.wustl.edu	37	12	116422119	116422119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	116422119	116422119	C	T	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	missense	c.4397	p.R1466H	0.861	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				68	0	0	40	9	18.3673
CIT	0	genome.wustl.edu	37	12	120189988	120189988	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	120189988	120189988	G	A	SNP	CIT	ENST00000261833	human	ensembl	74_37	-1	known	missense	c.2645	p.S882F	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CIT	HGNC	ENSG00000122966				53	0	0	25	14	35.8974
ANAPC5	0	genome.wustl.edu	37	12	121757618	121757618	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	121757618	121757618	A	G	SNP	ANAPC5	ENST00000261819	human	ensembl	74_37	-1	known	missense	c.1519	p.W507R	1.000	NULL	smart_TPR_repeat	-	no_errors	ANAPC5	HGNC	ENSG00000089053				57	0	0	21	24	53.3333
KDM2B	0	genome.wustl.edu	37	12	121958808	121958808	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	121958808	121958808	C	T	SNP	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	missense	c.1027	p.E343K	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				82	0	0	42	14	25
MORN3	0	genome.wustl.edu	37	12	122107246	122107246	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	122107246	122107246	G	A	SNP	MORN3	ENST00000355329	human	ensembl	74_37	-1	known	silent	c.144	p.H48	0.943	pfam_MORN,smart_MORN	pfam_MORN,smart_MORN	-	no_errors	MORN3	HGNC	ENSG00000139714				145	0	0	104	24	18.75
BCL7A	0	genome.wustl.edu	37	12	122481866	122481866	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	122481866	122481866	G	A	SNP	BCL7A	ENST00000538010	human	ensembl	74_37	+1	known	missense	c.346	p.A116T	0.929	NULL	pfam_BCL7	-	no_errors	BCL7A	HGNC	ENSG00000110987				196	0	0	103	28	21.374
BCL7A	0	genome.wustl.edu	37	12	122492808	122492808	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	122492808	122492808	C	T	SNP	BCL7A	ENST00000538010	human	ensembl	74_37	+1	known	silent	c.537	p.A179	0.000	NULL	pfam_BCL7	-	no_errors	BCL7A	HGNC	ENSG00000110987				208	0	0	104	36	25.7143
IL31	0	genome.wustl.edu	37	12	122658459	122658459	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	122658459	122658459	G	A	SNP	IL31	ENST00000377035	human	ensembl	74_37	-1	known	nonsense	c.97	p.R33*	0.000	NULL	NULL	-	no_errors	IL31	HGNC	ENSG00000204671				135	0	0	60	46	43.3962
CLIP1	0	genome.wustl.edu	37	12	122848546	122848546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	122848546	122848546	C	T	SNP	CLIP1	ENST00000540338	human	ensembl	74_37	-1	known	missense	c.766	p.A256T	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779				62	0	0	33	5	13.1579
HCAR3	0	genome.wustl.edu	37	12	123201180	123201180	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	123201180	123201180	C	T	SNP	HCAR3	ENST00000528880	human	ensembl	74_37	-1	known	silent	c.105	p.G35	0.074	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HCAR3	HGNC	ENSG00000255398				74	0	0	55	17	23.6111
C12orf65	0	genome.wustl.edu	37	12	123738251	123738251	+	Silent	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	123738251	123738251	T	G	SNP	C12orf65	ENST00000253233	human	ensembl	74_37	+1	known	silent	c.30	p.P10	0.000	NULL	pfam_Pep_chain_release_fac_I_II	-	no_errors	C12orf65	HGNC	ENSG00000130921				128	0	0	60	23	27.7108
DDX55	0	genome.wustl.edu	37	12	124102357	124102357	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	124102357	124102357	G	A	SNP	DDX55	ENST00000238146	human	ensembl	74_37	+1	known	missense	c.1102	p.A368T	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX55	HGNC	ENSG00000111364				143	0	0	98	29	22.8346
NCOR2	0	genome.wustl.edu	37	12	124870328	124870328	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	124870328	124870328	T	C	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.1982	p.N661S	1.000	superfamily_Homeodomain-like	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				181	1	0.549451	56	61	52.1368
BRI3BP	0	genome.wustl.edu	37	12	125509729	125509729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	125509729	125509729	G	A	SNP	BRI3BP	ENST00000341446	human	ensembl	74_37	+1	known	missense	c.509	p.C170Y	1.000	NULL	NULL	-	no_errors	BRI3BP	HGNC	ENSG00000184992				144	0	0	84	27	24.3243
TMEM132B	0	genome.wustl.edu	37	12	125834260	125834260	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	125834260	125834260	T	C	SNP	TMEM132B	ENST00000299308	human	ensembl	74_37	+1	known	silent	c.315	p.S105	0.005	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364				214	0	0	140	51	26.7016
SFSWAP	0	genome.wustl.edu	37	12	132211522	132211522	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	132211522	132211522	T	A	SNP	SFSWAP	ENST00000261674	human	ensembl	74_37	+1	known	missense	c.870	p.D290E	0.031	NULL	pfam_SWAP_N_domain,pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	-	no_errors	SFSWAP	HGNC	ENSG00000061936				87	0	0	45	15	25
ULK1	0	genome.wustl.edu	37	12	132398927	132398927	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	132398927	132398927	C	T	SNP	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	silent	c.1278	p.C426	0.050	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169				135	0	0	74	20	21.2766
PUS1	0	genome.wustl.edu	37	12	132416772	132416772	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	132416772	132416772	C	A	SNP	PUS1	ENST00000376649	human	ensembl	74_37	+1	known	missense	c.356	p.A119D	1.000	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	-	no_errors	PUS1	HGNC	ENSG00000177192				48	0	0	33	10	23.2558
PUS1	0	genome.wustl.edu	37	12	132426072	132426072	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	132426072	132426072	C	T	SNP	PUS1	ENST00000376649	human	ensembl	74_37	+1	known	silent	c.780	p.C260	0.190	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	-	no_errors	PUS1	HGNC	ENSG00000177192				110	0	0	56	21	27.2727
EP400	0	genome.wustl.edu	37	12	132504671	132504671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	132504671	132504671	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.4463	p.T1488M	0.994	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				127	0	0	51	30	37.037
NOC4L	0	genome.wustl.edu	37	12	132632496	132632496	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	132632496	132632496	C	T	SNP	NOC4L	ENST00000330579	human	ensembl	74_37	+1	known	silent	c.675	p.T225	0.000	NULL	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	NOC4L	HGNC	ENSG00000184967				23	0	0	20	10	33.3333
GOLGA3	0	genome.wustl.edu	37	12	133360718	133360718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	133360718	133360718	C	T	SNP	GOLGA3	ENST00000545875	human	ensembl	74_37	-1	known	missense	c.3299	p.R1100H	0.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				44	0	0	34	7	17.0732
ZNF10	0	genome.wustl.edu	37	12	133733401	133733401	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	133733401	133733401	C	T	SNP	ZNF10	ENST00000248211	human	ensembl	74_37	+1	known	silent	c.1569	p.G523	0.312	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF10	HGNC	ENSG00000256223				96	0	0	46	44	48.8889
GRIN2B	0	genome.wustl.edu	37	12	13715915	13715915	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	13715915	13715915	C	T	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	silent	c.4257	p.P1419	0.041	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				85	0	0	63	18	22.2222
GRIN2B	0	genome.wustl.edu	37	12	13716141	13716141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	13716141	13716141	G	A	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.4031	p.A1344V	0.995	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				72	0	0	41	41	50
SLCO1C1	0	genome.wustl.edu	37	12	20903684	20903684	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	20903684	20903684	G	T	SNP	SLCO1C1	ENST00000381552	human	ensembl	74_37	+1	known	missense	c.1874	p.G625V	1.000	pfam_OA_transporter,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155				94	0	0	43	33	43.4211
GYS2	0	genome.wustl.edu	37	12	21721877	21721877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	21721877	21721877	C	T	SNP	GYS2	ENST00000261195	human	ensembl	74_37	-1	known	missense	c.745	p.V249I	0.987	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1	-	no_errors	GYS2	HGNC	ENSG00000111713				158	0	0	92	28	23.3333
KRAS	0	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	25398281	25398281	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.38	p.G13D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				23	0	0	10	19	65.5172
OVCH1	0	genome.wustl.edu	37	12	29640731	29640731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	29640731	29640731	C	T	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	missense	c.787	p.A263T	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				30	0	0	18	7	28
OVCH1	0	genome.wustl.edu	37	12	29648250	29648250	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	29648250	29648250	G	A	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	missense	c.422	p.A141V	0.793	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				290	0	0	102	82	44.5652
LRRK2	0	genome.wustl.edu	37	12	40702310	40702310	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	40702310	40702310	G	A	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.4001	p.R1334Q	1.000	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				68	0	0	46	7	13.2075
ADAMTS20	0	genome.wustl.edu	37	12	43822569	43822569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	43822569	43822569	G	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.3523	p.R1175C	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				159	0	0	61	20	24.6914
ADAMTS20	0	genome.wustl.edu	37	12	43925845	43925845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	43925845	43925845	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.607	p.V203M	0.100	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				58	0	0	28	8	22.2222
TMEM117	0	genome.wustl.edu	37	12	44781841	44781841	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	44781841	44781841	G	A	SNP	TMEM117	ENST00000266534	human	ensembl	74_37	+1	known	missense	c.931	p.V311I	1.000	NULL	NULL	-	no_errors	TMEM117	HGNC	ENSG00000139173				51	0	0	21	18	46.1538
FGF23	0	genome.wustl.edu	37	12	4479894	4479894	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	4479894	4479894	T	C	SNP	FGF23	ENST00000237837	human	ensembl	74_37	-1	known	missense	c.371	p.Y124C	0.739	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF23	HGNC	ENSG00000118972				266	0	0	107	21	16.4062
NELL2	0	genome.wustl.edu	37	12	45173705	45173705	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	45173705	45173705	C	A	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	missense	c.586	p.A196S	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613				208	0	0	108	30	21.7391
ARID2	0	genome.wustl.edu	37	12	46123895	46123895	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	46123895	46123895	T	C	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.161	p.V54A	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				70	0	0	40	5	11.1111
RAD51AP1	0	genome.wustl.edu	37	12	4655492	4655492	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	4655492	4655492	A	G	SNP	RAD51AP1	ENST00000228843	human	ensembl	74_37	+1	known	missense	c.278	p.K93R	1.000	NULL	NULL	-	no_errors	RAD51AP1	HGNC	ENSG00000111247				90	0	0	57	14	19.7183
DYRK4	0	genome.wustl.edu	37	12	4705421	4705421	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	4705421	4705421	T	C	SNP	DYRK4	ENST00000010132	human	ensembl	74_37	+1	known	missense	c.389	p.V130A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219				187	0	0	95	26	21.4876
HDAC7	0	genome.wustl.edu	37	12	48179218	48179218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	48179218	48179218	G	A	SNP	HDAC7	ENST00000380610	human	ensembl	74_37	-1	known	missense	c.2794	p.P932S	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC7	HGNC	ENSG00000061273				240	0	0	93	78	45.614
OR8S1	0	genome.wustl.edu	37	12	48921732	48921732	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	48921732	48921732	A	G	SNP	OR8S1	ENST00000310194	human	ensembl	74_37	+1	known	missense	c.926	p.Q309R	0.477	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8S1	HGNC	ENSG00000197376				59	0	0	19	15	44.1176
ASIC1	0	genome.wustl.edu	37	12	50452564	50452564	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	50452564	50452564	C	T	SNP	ASIC1	ENST00000228468	human	ensembl	74_37	+1	known	silent	c.15	p.A5	0.944	NULL	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC1	HGNC	ENSG00000110881				111	1	0.892857	64	18	21.9512
LARP4	0	genome.wustl.edu	37	12	50835413	50835413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	50835413	50835413	G	A	SNP	LARP4	ENST00000429001	human	ensembl	74_37	+1	known	missense	c.809	p.G270D	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4	HGNC	ENSG00000161813				96	0	0	44	10	18.5185
TMPRSS12	0	genome.wustl.edu	37	12	51237698	51237698	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	51237698	51237698	C	T	SNP	TMPRSS12	ENST00000398458	human	ensembl	74_37	+1	known	silent	c.261	p.G87	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS12	HGNC	ENSG00000186452				15	0	0	5	4	44.4444
KRT86	0	genome.wustl.edu	37	12	52695966	52695966	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	52695966	52695966	C	T	SNP	KRT86	ENST00000293525	human	ensembl	74_37	+1	known	missense	c.266	p.T89M	1.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT86	HGNC	ENSG00000170442				8	0	0	10	13	56.5217
KRT75	0	genome.wustl.edu	37	12	52822136	52822136	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	52822136	52822136	C	G	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1286	p.R429P	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				120	0	0	32	41	56.1644
KRT2	0	genome.wustl.edu	37	12	53040721	53040721	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	53040721	53040721	G	A	SNP	KRT2	ENST00000309680	human	ensembl	74_37	-1	known	silent	c.1272	p.I424	0.961	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867				124	0	0	50	55	52.381
OR10P1	0	genome.wustl.edu	37	12	56031165	56031165	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	56031165	56031165	A	G	SNP	OR10P1	ENST00000309675	human	ensembl	74_37	+1	known	missense	c.490	p.I164V	0.967	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10P1	HGNC	ENSG00000175398				121	0	0	71	25	26.0417
ERBB3	0	genome.wustl.edu	37	12	56478854	56478854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	56478854	56478854	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.310	p.V104M	0.994	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				211	0	0	123	28	18.543
ESYT1	0	genome.wustl.edu	37	12	56536104	56536104	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	56536104	56536104	A	G	SNP	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	silent	c.2658	p.L886	0.007	superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641				185	0	0	114	35	23.4899
ANKRD52	0	genome.wustl.edu	37	12	56648052	56648052	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	56648052	56648052	G	T	SNP	ANKRD52	ENST00000267116	human	ensembl	74_37	-1	known	silent	c.705	p.P235	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD52	HGNC	ENSG00000139645				295	0	0	95	55	36.6667
ATP5B	0	genome.wustl.edu	37	12	57033006	57033006	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	57033006	57033006	C	T	SNP	ATP5B	ENST00000262030	human	ensembl	74_37	-1	known	missense	c.1373	p.R458Q	1.000	pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_F1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1_a/bsu_N,smart_AAA+_ATPase,tigrfam_ATPase_F1-cplx_bsu	-	no_errors	ATP5B	HGNC	ENSG00000110955				129	0	0	82	39	32.2314
LRP1	0	genome.wustl.edu	37	12	57535223	57535223	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	57535223	57535223	T	C	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.257	p.V86A	0.888	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				63	0	0	40	20	33.3333
LRP1	0	genome.wustl.edu	37	12	57554890	57554890	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	57554890	57554890	G	T	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.2194	p.D732Y	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				137	0	0	81	39	32.5
LRP1	0	genome.wustl.edu	37	12	57598433	57598433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	57598433	57598433	C	T	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.11095	p.R3699W	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				198	0	0	96	19	16.5217
GLI1	0	genome.wustl.edu	37	12	57859040	57859040	+	Splice_Site	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	57859040	57859040	T	C	SNP	GLI1	ENST00000228682	human	ensembl	74_37	+1	known	splice_site	c.534+2	e4+2	0.996	-	-	-	no_errors	GLI1	HGNC	ENSG00000111087				69	0	0	29	7	19.4444
ANO2	0	genome.wustl.edu	37	12	6031894	6031894	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	6031894	6031894	A	G	SNP	ANO2	ENST00000356134	human	ensembl	74_37	-1	known	silent	c.87	p.H29	0.000	NULL	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617				35	0	0	10	7	41.1765
VWF	0	genome.wustl.edu	37	12	6135070	6135070	+	Splice_Site	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	6135070	6135070	A	G	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	splice_site	c.3108+2	e22+2	0.995	-	-	-	no_errors	VWF	HGNC	ENSG00000110799				132	0	0	70	21	23.0769
ENSG00000255886	0	genome.wustl.edu	37	12	64491284	64491284	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	64491284	64491284	A	G	SNP	ENSG00000255886	ENST00000535594	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.483	-	-	-	no_errors	RP11-196H14.2	Clone_based_vega_gene	ENSG00000255886				9	0	0	6	4	40
SRGAP1	0	genome.wustl.edu	37	12	64519881	64519881	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	64519881	64519881	C	T	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	silent	c.2349	p.G783	0.270	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				108	0	0	65	21	24.4186
TBK1	0	genome.wustl.edu	37	12	64895142	64895142	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	64895142	64895142	G	A	SNP	TBK1	ENST00000331710	human	ensembl	74_37	+1	known	missense	c.2171	p.R724H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TBK1	HGNC	ENSG00000183735				158	0	0	115	7	5.7377
IRAK3	0	genome.wustl.edu	37	12	66620619	66620619	+	Splice_Site	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	66620619	66620619	T	C	SNP	IRAK3	ENST00000261233	human	ensembl	74_37	+1	known	splice_site	c.768+2	e7+2	1.000	-	-	-	no_errors	IRAK3	HGNC	ENSG00000090376				51	0	0	22	25	53.1915
CNOT2	0	genome.wustl.edu	37	12	70732481	70732481	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	70732481	70732481	G	T	SNP	CNOT2	ENST00000229195	human	ensembl	74_37	+1	known	missense	c.1057	p.D353Y	1.000	NULL	pfam_NOT	-	no_errors	CNOT2	HGNC	ENSG00000111596				107	0	0	70	18	20.4545
CD163L1	0	genome.wustl.edu	37	12	7522059	7522059	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	7522059	7522059	A	G	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	silent	c.3933	p.D1311	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				208	0	0	110	32	22.5352
ENSG00000257434	0	genome.wustl.edu	37	12	75437092	75437092	+	RNA	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	75437092	75437092	G	T	SNP	ENSG00000257434	ENST00000547040	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	RP11-81K13.1	Clone_based_vega_gene	ENSG00000257434				26	0	0	22	4	15.3846
SYT1	0	genome.wustl.edu	37	12	79689885	79689885	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	79689885	79689885	G	A	SNP	SYT1	ENST00000261205	human	ensembl	74_37	+1	known	missense	c.511	p.A171T	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT1	HGNC	ENSG00000067715				103	0	0	49	21	30
METTL25	0	genome.wustl.edu	37	12	82872739	82872739	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	82872739	82872739	A	G	SNP	METTL25	ENST00000248306	human	ensembl	74_37	+1	known	missense	c.1748	p.K583R	1.000	NULL	NULL	-	no_errors	METTL25	HGNC	ENSG00000127720				106	0	0	56	19	25.3333
PHC1	0	genome.wustl.edu	37	12	9083041	9083041	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	9083041	9083041	T	C	SNP	PHC1	ENST00000543824	human	ensembl	74_37	+1	known	missense	c.623	p.L208S	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_Znf_MYM,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC1	HGNC	ENSG00000111752				33	0	0	8	4	33.3333
EEA1	0	genome.wustl.edu	37	12	93251100	93251100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	93251100	93251100	G	A	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	missense	c.317	p.S106L	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189				54	0	0	46	14	23.3333
TMPO	0	genome.wustl.edu	37	12	98909808	98909808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	98909808	98909808	G	A	SNP	TMPO	ENST00000266732	human	ensembl	74_37	+1	known	missense	c.163	p.A55T	1.000	superfamily_LEM/LEM-like_dom	pfam_LAP2alpha,pfam_LEM-like_dom,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom,pfscan_LEM-like_dom	-	no_errors	TMPO	HGNC	ENSG00000120802				44	0	0	10	11	52.381
ZIC5	0	genome.wustl.edu	37	13	100622673	100622673	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	100622673	100622673	C	T	SNP	ZIC5	ENST00000267294	human	ensembl	74_37	-1	known	silent	c.1257	p.P419	0.157	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC5	HGNC	ENSG00000139800				14	0	0	11	4	26.6667
ZIC2	0	genome.wustl.edu	37	13	100637592	100637592	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	100637592	100637592	C	A	SNP	ZIC2	ENST00000376335	human	ensembl	74_37	+1	known	missense	c.1255	p.P419T	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC2	HGNC	ENSG00000043355				55	0	0	31	7	18.4211
PCCA	0	genome.wustl.edu	37	13	100909900	100909900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	100909900	100909900	G	A	SNP	PCCA	ENST00000376285	human	ensembl	74_37	+1	known	missense	c.689	p.R230H	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198				58	0	0	25	6	19.3548
LIG4	0	genome.wustl.edu	37	13	108861786	108861786	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	108861786	108861786	C	T	SNP	LIG4	ENST00000356922	human	ensembl	74_37	-1	known	missense	c.1831	p.A611T	1.000	NULL	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_IV,pfam_BRCT_dom,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG4	HGNC	ENSG00000174405				118	0	0	83	21	20.1923
MCF2L	0	genome.wustl.edu	37	13	113719271	113719271	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	113719271	113719271	A	G	SNP	MCF2L	ENST00000375604	human	ensembl	74_37	+1	known	missense	c.799	p.M267V	0.996	NULL	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217				75	0	0	32	15	31.9149
MCF2L	0	genome.wustl.edu	37	13	113750894	113750894	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	113750894	113750894	G	C	SNP	MCF2L	ENST00000375604	human	ensembl	74_37	+1	known	missense	c.3390	p.E1130D	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217				28	0	0	14	2	12.5
PCID2	0	genome.wustl.edu	37	13	113835535	113835535	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	113835535	113835535	T	C	SNP	PCID2	ENST00000246505	human	ensembl	74_37	-1	known	missense	c.857	p.Y286C	1.000	smart_PAM	pfam_PCI_dom,smart_PAM	-	no_errors	PCID2	HGNC	ENSG00000126226				90	0	0	58	14	19.4444
GAS6-AS1	0	genome.wustl.edu	37	13	114537699	114537699	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	114537699	114537699	C	T	SNP	GAS6-AS1	ENST00000458001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GAS6-AS1	HGNC	ENSG00000233695				72	0	0	24	6	20
RASA3	0	genome.wustl.edu	37	13	114776705	114776705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	114776705	114776705	G	A	SNP	RASA3	ENST00000334062	human	ensembl	74_37	-1	known	missense	c.1532	p.T511M	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA3	HGNC	ENSG00000185989				58	0	0	9	8	47.0588
USPL1	0	genome.wustl.edu	37	13	31233355	31233355	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	31233355	31233355	C	T	SNP	USPL1	ENST00000255304	human	ensembl	74_37	+1	known	silent	c.3141	p.C1047	0.000	NULL	pfscan_Peptidase_C19/C67	-	no_errors	USPL1	HGNC	ENSG00000132952				150	0	0	91	30	24.7934
USPL1	0	genome.wustl.edu	37	13	31233466	31233466	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	31233466	31233466	C	T	SNP	USPL1	ENST00000255304	human	ensembl	74_37	+1	known	silent	c.3252	p.F1084	0.989	NULL	pfscan_Peptidase_C19/C67	-	no_errors	USPL1	HGNC	ENSG00000132952				91	0	0	59	10	14.4928
MEDAG	0	genome.wustl.edu	37	13	31480912	31480912	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	31480912	31480912	T	G	SNP	MEDAG	ENST00000380482	human	ensembl	74_37	+1	known	missense	c.260	p.L87R	1.000	NULL	NULL	-	no_errors	MEDAG	HGNC	ENSG00000102802				14	0	0	9	5	35.7143
KL	0	genome.wustl.edu	37	13	33590827	33590827	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	33590827	33590827	C	T	SNP	KL	ENST00000380099	human	ensembl	74_37	+1	known	silent	c.249	p.H83	0.999	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116				24	0	0	17	12	41.3793
KL	0	genome.wustl.edu	37	13	33591260	33591260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	33591260	33591260	G	A	SNP	KL	ENST00000380099	human	ensembl	74_37	+1	known	missense	c.682	p.G228S	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116				54	0	0	31	9	22.5
EXOSC8	0	genome.wustl.edu	37	13	37582924	37582924	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	37582924	37582924	A	C	SNP	EXOSC8	ENST00000389704	human	ensembl	74_37	+1	known	missense	c.667	p.T223P	1.000	pfam_ExoRNase_PH_dom2,superfamily_ExoRNase_PH_dom2	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC8	HGNC	ENSG00000120699				50	0	0	45	15	25
FREM2	0	genome.wustl.edu	37	13	39435611	39435611	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	39435611	39435611	G	A	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	silent	c.7563	p.P2521	0.003	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				67	0	0	56	20	26.3158
LHFP	0	genome.wustl.edu	37	13	40175215	40175215	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	40175215	40175215	A	G	SNP	LHFP	ENST00000379589	human	ensembl	74_37	-1	known	missense	c.139	p.F47L	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFP	HGNC	ENSG00000183722				364	0	0	171	34	16.5854
SUGT1P3	0	genome.wustl.edu	37	13	41486766	41486766	+	RNA	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	41486766	41486766	C	A	SNP	SUGT1P3	ENST00000304932	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.712	-	-	-	no_errors	SUGT1P3	HGNC	ENSG00000239827				28	0	0	17	4	19.0476
VWA8	0	genome.wustl.edu	37	13	42407530	42407530	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	42407530	42407530	C	T	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	silent	c.1563	p.A521	0.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				58	0	0	33	9	21.4286
AKAP11	0	genome.wustl.edu	37	13	42877676	42877676	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	42877676	42877676	C	T	SNP	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	silent	c.4794	p.C1598	0.897	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				195	0	0	149	40	21.164
TSC22D1	0	genome.wustl.edu	37	13	45149774	45149774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	45149774	45149774	G	A	SNP	TSC22D1	ENST00000458659	human	ensembl	74_37	-1	known	missense	c.437	p.T146M	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804				110	0	0	59	28	32.1839
COG3	0	genome.wustl.edu	37	13	46103989	46103989	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	46103989	46103989	T	C	SNP	COG3	ENST00000349995	human	ensembl	74_37	+1	known	missense	c.2294	p.L765S	0.999	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152				142	0	0	101	34	25.1852
SERPINE3	0	genome.wustl.edu	37	13	51935996	51935996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	51935996	51935996	C	T	SNP	SERPINE3	ENST00000521255	human	ensembl	74_37	+1	known	missense	c.1138	p.P380S	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINE3	HGNC	ENSG00000253309				64	0	0	43	12	21.8182
THSD1	0	genome.wustl.edu	37	13	52960256	52960256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	52960256	52960256	G	A	SNP	THSD1	ENST00000258613	human	ensembl	74_37	-1	known	missense	c.1087	p.R363C	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114				188	0	0	78	29	27.1028
THSD1	0	genome.wustl.edu	37	13	52960305	52960305	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	52960305	52960305	C	T	SNP	THSD1	ENST00000258613	human	ensembl	74_37	-1	known	nonsense	c.1038	p.W346*	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114				206	1	0.483092	86	32	27.1186
THSD1	0	genome.wustl.edu	37	13	52971604	52971604	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	52971604	52971604	G	A	SNP	THSD1	ENST00000258613	human	ensembl	74_37	-1	known	missense	c.784	p.P262S	0.982	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114				98	0	0	60	22	26.8293
PCDH8	0	genome.wustl.edu	37	13	53420351	53420351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	53420351	53420351	C	T	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	missense	c.2221	p.G741R	0.922	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				66	0	0	20	10	33.3333
PCDH17	0	genome.wustl.edu	37	13	58207290	58207290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	58207290	58207290	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.610	p.E204K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				44	0	0	33	13	28.2609
PCDH17	0	genome.wustl.edu	37	13	58207934	58207934	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	58207934	58207934	C	T	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.1254	p.Y418	0.985	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				39	0	0	19	6	24
PCDH17	0	genome.wustl.edu	37	13	58208012	58208012	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	58208012	58208012	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.1332	p.A444	0.969	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				72	0	0	43	11	20.3704
PCDH17	0	genome.wustl.edu	37	13	58208351	58208351	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	58208351	58208351	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.1671	p.S557	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				100	1	0.990099	39	16	29.0909
NDFIP2	0	genome.wustl.edu	37	13	80125185	80125185	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	80125185	80125185	A	T	SNP	NDFIP2	ENST00000218652	human	ensembl	74_37	+1	known	missense	c.941	p.Y314F	1.000	pfam_NEDD4/BSD2	pfam_NEDD4/BSD2	-	no_errors	NDFIP2	HGNC	ENSG00000102471				332	0	0	195	12	5.7971
SLITRK6	0	genome.wustl.edu	37	13	86369595	86369595	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	86369595	86369595	C	T	SNP	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	missense	c.1049	p.R350H	0.957	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564				147	0	0	95	25	20.8333
DZIP1	0	genome.wustl.edu	37	13	96242593	96242593	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	96242593	96242593	G	A	SNP	DZIP1	ENST00000347108	human	ensembl	74_37	-1	known	nonsense	c.1783	p.R595*	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DZIP1	HGNC	ENSG00000134874				169	0	0	76	32	29.6296
RNF113B	0	genome.wustl.edu	37	13	98829062	98829062	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	98829062	98829062	G	A	SNP	RNF113B	ENST00000267291	human	ensembl	74_37	-1	known	silent	c.429	p.H143	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113B	HGNC	ENSG00000139797				88	0	0	50	17	25.3731
DOCK9	0	genome.wustl.edu	37	13	99515771	99515771	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	99515771	99515771	C	T	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	silent	c.3321	p.E1107	0.984	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				43	0	0	53	11	17.1875
YY1	0	genome.wustl.edu	37	14	100706003	100706003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	100706003	100706003	G	A	SNP	YY1	ENST00000262238	human	ensembl	74_37	+1	known	missense	c.422	p.G141D	0.984	pirsf_TF_Yin_yang	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY1	HGNC	ENSG00000100811				52	0	0	61	24	28.2353
MIR323A	0	genome.wustl.edu	37	14	101492130	101492130	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	101492130	101492130	G	A	SNP	MIR323A	ENST00000362199	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR323A	HGNC	ENSG00000199069				119	1	0.833333	57	19	25
DYNC1H1	0	genome.wustl.edu	37	14	102471550	102471550	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	102471550	102471550	C	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	nonsense	c.5410	p.R1804*	0.985	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				94	0	0	26	18	40.9091
BAG5	0	genome.wustl.edu	37	14	104026839	104026839	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	104026839	104026839	C	T	SNP	BAG5	ENST00000337322	human	ensembl	74_37	-1	known	silent	c.786	p.S262	0.754	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG5	HGNC	ENSG00000166170				149	0	0	53	31	36.9048
AHNAK2	0	genome.wustl.edu	37	14	105406489	105406489	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	105406489	105406489	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.15299	p.A5100V	0.233	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				189	0	0	74	21	22.1053
PACS2	0	genome.wustl.edu	37	14	105843234	105843234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	105843234	105843234	G	A	SNP	PACS2	ENST00000458164	human	ensembl	74_37	+1	known	missense	c.931	p.V311I	0.999	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364				132	1	0.75188	33	17	34
ENSG00000244306	0	genome.wustl.edu	37	14	19856897	19856897	+	RNA	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	19856897	19856897	T	G	SNP	ENSG00000244306	ENST00000551334	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTD-2314B22.3	Clone_based_vega_gene	ENSG00000244306				82	0	0	42	7	14.2857
OR4N5	0	genome.wustl.edu	37	14	20612565	20612565	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	20612565	20612565	G	A	SNP	OR4N5	ENST00000333629	human	ensembl	74_37	+1	known	missense	c.671	p.R224H	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4N5	HGNC	ENSG00000184394				163	0	0	105	39	27.0833
RNASE6	0	genome.wustl.edu	37	14	21250189	21250189	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	21250189	21250189	T	C	SNP	RNASE6	ENST00000304677	human	ensembl	74_37	+1	known	missense	c.331	p.Y111H	0.031	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE6	HGNC	ENSG00000169413				232	0	0	106	47	30.719
LOC101929718	0	genome.wustl.edu	37	14	21464482	21464482	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	21464482	21464482	C	T	SNP	LOC101929718	ENST00000557335	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.042	-	-	-	no_errors	RP11-84C10.4	Clone_based_vega_gene	ENSG00000258471				168	0	0	99	48	32.6531
AJUBA	0	genome.wustl.edu	37	14	23443287	23443287	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	23443287	23443287	C	T	SNP	AJUBA	ENST00000262713	human	ensembl	74_37	-1	known	missense	c.1460	p.R487Q	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	AJUBA	HGNC	ENSG00000129474				338	0	0	89	35	28.2258
MYH6	0	genome.wustl.edu	37	14	23870060	23870060	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	23870060	23870060	T	C	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.1268	p.Y423C	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				142	1	0.699301	65	22	25.2874
MYH7	0	genome.wustl.edu	37	14	23891463	23891463	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	23891463	23891463	G	A	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	silent	c.3171	p.G1057	0.001	superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				104	0	0	45	18	28.5714
GZMH	0	genome.wustl.edu	37	14	25076614	25076614	+	Splice_Site	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	25076614	25076614	T	G	SNP	GZMH	ENST00000216338	human	ensembl	74_37	-1	known	splice_site	c.340-2	e4-2	0.995	-	-	-	no_errors	GZMH	HGNC	ENSG00000100450				55	0	0	33	15	31.25
FOXG1	0	genome.wustl.edu	37	14	29237333	29237333	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	29237333	29237333	A	G	SNP	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	missense	c.848	p.K283R	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165				79	0	0	55	19	25.6757
G2E3	0	genome.wustl.edu	37	14	31084704	31084704	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	31084704	31084704	A	G	SNP	G2E3	ENST00000206595	human	ensembl	74_37	+1	known	missense	c.1823	p.K608R	0.296	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_HECT,pfscan_HECT	-	no_errors	G2E3	HGNC	ENSG00000092140				156	0	0	64	41	39.0476
HEATR5A	0	genome.wustl.edu	37	14	31785042	31785042	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	31785042	31785042	T	C	SNP	HEATR5A	ENST00000389961	human	ensembl	74_37	-1	known	silent	c.4134	p.L1378	0.001	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493				33	0	0	13	4	23.5294
BAZ1A	0	genome.wustl.edu	37	14	35276669	35276669	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	35276669	35276669	G	A	SNP	BAZ1A	ENST00000360310	human	ensembl	74_37	-1	known	silent	c.714	p.V238	1.000	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604				47	0	0	17	11	39.2857
PSMA6	0	genome.wustl.edu	37	14	35782126	35782126	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	35782126	35782126	A	G	SNP	PSMA6	ENST00000261479	human	ensembl	74_37	+1	known	missense	c.449	p.Q150R	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA6	HGNC	ENSG00000100902				256	0	0	79	44	35.7724
KLHL28	0	genome.wustl.edu	37	14	45414707	45414707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	45414707	45414707	C	T	SNP	KLHL28	ENST00000396128	human	ensembl	74_37	-1	known	missense	c.425	p.R142H	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454				106	0	0	45	24	34.7826
FANCM	0	genome.wustl.edu	37	14	45642364	45642364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	45642364	45642364	G	A	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.2267	p.R756H	0.988	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				148	0	0	57	18	24
RPL10L	0	genome.wustl.edu	37	14	47120511	47120511	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	47120511	47120511	C	A	SNP	RPL10L	ENST00000298283	human	ensembl	74_37	-1	known	missense	c.429	p.Q143H	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10L	HGNC	ENSG00000165496				129	0	0	57	37	39.3617
NEMF	0	genome.wustl.edu	37	14	50298924	50298924	+	Splice_Site	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	50298924	50298924	C	T	SNP	NEMF	ENST00000298310	human	ensembl	74_37	-1	known	splice_site	c.806+1	e9+1	1.000	-	-	-	no_errors	NEMF	HGNC	ENSG00000165525				107	0	0	44	11	20
GPR137C	0	genome.wustl.edu	37	14	53100600	53100600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	53100600	53100600	G	A	SNP	GPR137C	ENST00000321662	human	ensembl	74_37	+1	known	missense	c.1048	p.D350N	1.000	NULL	NULL	-	no_errors	GPR137C	HGNC	ENSG00000180998				135	0	0	46	14	23.3333
L3HYPDH	0	genome.wustl.edu	37	14	59950879	59950879	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	59950879	59950879	G	T	SNP	L3HYPDH	ENST00000247194	human	ensembl	74_37	-1	known	silent	c.156	p.R52	1.000	pfam_Pro_racemase_fam,pirsf_Pro_racemase_fam	pfam_Pro_racemase_fam,pirsf_Pro_racemase_fam	-	no_errors	L3HYPDH	HGNC	ENSG00000126790				29	0	0	9	6	40
C14orf39	0	genome.wustl.edu	37	14	60928227	60928227	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	60928227	60928227	T	C	SNP	C14orf39	ENST00000321731	human	ensembl	74_37	-1	known	missense	c.1057	p.R353G	1.000	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008				53	0	0	22	8	26.6667
PLEKHG3	0	genome.wustl.edu	37	14	65198119	65198119	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	65198119	65198119	T	C	SNP	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	missense	c.890	p.L297P	1.000	pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822				76	0	0	32	11	25.5814
FUT8	0	genome.wustl.edu	37	14	66209057	66209057	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	66209057	66209057	T	C	SNP	FUT8	ENST00000360689	human	ensembl	74_37	+1	known	missense	c.1657	p.Y553H	0.998	superfamily_SH3_domain,smart_SH3_domain,pirsf_Alpha1_6FUT_euk	superfamily_SH3_domain,smart_SH3_domain,pirsf_Alpha1_6FUT_euk	-	no_errors	FUT8	HGNC	ENSG00000033170				119	0	0	53	23	30.2632
GPHN	0	genome.wustl.edu	37	14	67647553	67647553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	67647553	67647553	C	T	SNP	GPHN	ENST00000478722	human	ensembl	74_37	+1	known	missense	c.2209	p.R737C	1.000	pfam_MoeA_C_domain_IV,superfamily_MoeA_C_domain_IV	pfam_Mopterin-bd_dom,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd_dom,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd_dom,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723				46	0	0	27	14	34.1463
SLC8A3	0	genome.wustl.edu	37	14	70518795	70518795	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	70518795	70518795	T	C	SNP	SLC8A3	ENST00000381269	human	ensembl	74_37	-1	known	missense	c.1943	p.E648G	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678				154	0	0	34	20	37.037
MED6	0	genome.wustl.edu	37	14	71059641	71059641	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	71059641	71059641	G	T	SNP	MED6	ENST00000256379	human	ensembl	74_37	-1	known	missense	c.422	p.P141H	1.000	pfam_Mediator_Med6,pirsf_Mediator_Med6_met/pln	pfam_Mediator_Med6,pirsf_Mediator_Med6_met/pln	-	no_errors	MED6	HGNC	ENSG00000133997				177	0	0	73	35	32.4074
C14orf169	0	genome.wustl.edu	37	14	73959945	73959945	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	73959945	73959945	A	G	SNP	C14orf169	ENST00000531973	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C14orf169	HGNC	ENSG00000255242				29	0	0	11	13	54.1667
YLPM1	0	genome.wustl.edu	37	14	75283784	75283784	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	75283784	75283784	A	G	SNP	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	missense	c.5836	p.S1946G	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				32	0	0	8	7	46.6667
TMED10	0	genome.wustl.edu	37	14	75601704	75601704	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	75601704	75601704	T	C	SNP	TMED10	ENST00000303575	human	ensembl	74_37	-1	known	missense	c.544	p.T182A	1.000	pfam_GOLD,pfscan_GOLD	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED10	HGNC	ENSG00000170348				127	0	0	40	13	24.5283
TTLL5	0	genome.wustl.edu	37	14	76238150	76238150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	76238150	76238150	G	A	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	missense	c.2089	p.G697S	0.948	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				207	0	0	89	41	31.5385
NRXN3	0	genome.wustl.edu	37	14	79175877	79175877	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	79175877	79175877	C	T	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	silent	c.1533	p.L511	0.006	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				250	0	0	72	29	28.7129
NRXN3	0	genome.wustl.edu	37	14	79746819	79746819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	79746819	79746819	G	A	SNP	NRXN3	ENST00000428277	human	ensembl	74_37	+1	known	missense	c.185	p.S62N	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Neurexin-like,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				234	0	0	84	36	30
PTPN21	0	genome.wustl.edu	37	14	88945374	88945374	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	88945374	88945374	G	T	SNP	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	missense	c.2401	p.L801I	1.000	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778				107	0	0	40	20	33.3333
TRIP11	0	genome.wustl.edu	37	14	92487911	92487911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	92487911	92487911	G	A	SNP	TRIP11	ENST00000267622	human	ensembl	74_37	-1	known	missense	c.577	p.H193Y	0.972	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815				58	0	0	28	8	22.2222
CPSF2	0	genome.wustl.edu	37	14	92608661	92608661	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	92608661	92608661	T	C	SNP	CPSF2	ENST00000298875	human	ensembl	74_37	+1	known	missense	c.815	p.V272A	1.000	pfam_Beta_Casp	pfam_Beta_Casp,pfam_RMMBL,pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	CPSF2	HGNC	ENSG00000165934				281	0	0	110	56	33.7349
RIN3	0	genome.wustl.edu	37	14	93118854	93118854	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	93118854	93118854	C	T	SNP	RIN3	ENST00000216487	human	ensembl	74_37	+1	known	missense	c.1460	p.A487V	0.000	NULL	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599				190	0	0	52	26	33.3333
RIN3	0	genome.wustl.edu	37	14	93154577	93154577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	93154577	93154577	C	T	SNP	RIN3	ENST00000216487	human	ensembl	74_37	+1	known	missense	c.2938	p.R980W	0.717	NULL	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599				27	0	0	12	5	29.4118
BTBD7	0	genome.wustl.edu	37	14	93761188	93761188	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	93761188	93761188	T	C	SNP	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	missense	c.178	p.T60A	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114				267	0	0	88	46	34.3284
COX8C	0	genome.wustl.edu	37	14	93813633	93813633	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	93813633	93813633	C	T	SNP	COX8C	ENST00000342144	human	ensembl	74_37	+1	known	missense	c.19	p.R7C	0.000	NULL	pfam_Cyt_c_oxidase_su8,superfamily_Cyt_c_oxidase_su8	-	no_errors	COX8C	HGNC	ENSG00000187581				52	0	0	24	11	31.4286
SETD3	0	genome.wustl.edu	37	14	99865332	99865332	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	99865332	99865332	C	T	SNP	SETD3	ENST00000331768	human	ensembl	74_37	-1	known	missense	c.1469	p.R490H	0.082	superfamily_Rubisco_LSMT_subst-bd	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,superfamily_Rubisco_LSMT_subst-bd	-	no_errors	SETD3	HGNC	ENSG00000183576				233	0	0	86	51	37.2263
DNM1P46	0	genome.wustl.edu	37	15	100331400	100331400	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	100331400	100331400	G	A	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				44	0	0	15	6	28.5714
LRRK1	0	genome.wustl.edu	37	15	101606847	101606847	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	101606847	101606847	G	A	SNP	LRRK1	ENST00000388948	human	ensembl	74_37	+1	known	missense	c.5771	p.R1924H	0.475	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237				345	1	0.289017	110	40	26.6667
HERC2P3	0	genome.wustl.edu	37	15	20663149	20663149	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	20663149	20663149	G	A	SNP	HERC2P3	ENST00000428453	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				40	0	0	23	7	23.3333
HERC2P2	0	genome.wustl.edu	37	15	23335601	23335601	+	RNA	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	23335601	23335601	A	T	SNP	HERC2P2	ENST00000560464	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P2	HGNC	ENSG00000140181				45	0	0	36	5	12.1951
TJP1	0	genome.wustl.edu	37	15	30024733	30024733	+	Splice_Site	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	30024733	30024733	C	T	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	splice_site	c.1922-1	e15-1	1.000	-	-	-	no_errors	TJP1	HGNC	ENSG00000104067				104	0	0	60	23	27.7108
TRPM1	0	genome.wustl.edu	37	15	31362235	31362235	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	31362235	31362235	A	G	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.329	p.M110T	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				693	1	0.144092	269	105	28.0749
OTUD7A	0	genome.wustl.edu	37	15	31947326	31947326	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	31947326	31947326	G	A	SNP	OTUD7A	ENST00000382902	human	ensembl	74_37	-1	known	missense	c.124	p.P42S	1.000	superfamily_UBA-like	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918				25	0	0	10	6	37.5
BUB1B	0	genome.wustl.edu	37	15	40494810	40494810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	40494810	40494810	G	A	SNP	BUB1B	ENST00000412359	human	ensembl	74_37	+1	known	missense	c.1691	p.R564Q	0.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970				269	0	0	95	46	32.6241
PLCB2	0	genome.wustl.edu	37	15	40581555	40581555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	40581555	40581555	G	A	SNP	PLCB2	ENST00000260402	human	ensembl	74_37	-1	known	missense	c.3272	p.T1091M	0.992	pirsf_PLC-beta,pfam_PLC-beta_C	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841				134	0	0	51	24	32
IVD	0	genome.wustl.edu	37	15	40699905	40699905	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	40699905	40699905	C	T	SNP	IVD	ENST00000487418	human	ensembl	74_37	+1	known	silent	c.222	p.S74	0.110	pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	IVD	HGNC	ENSG00000128928				153	0	0	64	20	23.8095
EXD1	0	genome.wustl.edu	37	15	41507974	41507974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	41507974	41507974	G	A	SNP	EXD1	ENST00000314992	human	ensembl	74_37	-1	known	missense	c.272	p.A91V	0.991	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD1	HGNC	ENSG00000178997				197	0	0	72	33	31.4286
ENSG00000258461	0	genome.wustl.edu	37	15	42694455	42694455	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	42694455	42694455	C	T	SNP	ENSG00000258461	ENST00000483208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-164J13.1	Clone_based_vega_gene	ENSG00000258461				41	0	0	24	12	33.3333
TGM5	0	genome.wustl.edu	37	15	43531014	43531014	+	Splice_Site	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	43531014	43531014	C	A	SNP	TGM5	ENST00000220420	human	ensembl	74_37	-1	known	splice_site	c.1345+1	e9+1	1.000	-	-	-	no_errors	TGM5	HGNC	ENSG00000104055				25	0	0	16	3	15.7895
TGM5	0	genome.wustl.edu	37	15	43552730	43552730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	43552730	43552730	G	A	SNP	TGM5	ENST00000220420	human	ensembl	74_37	-1	known	missense	c.58	p.R20W	0.000	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055				201	0	0	50	20	28.5714
TGM7	0	genome.wustl.edu	37	15	43585153	43585153	+	Splice_Site	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	43585153	43585153	C	A	SNP	TGM7	ENST00000452443	human	ensembl	74_37	-1	known	splice_site	c.194-1	e3-1	1.000	-	-	-	no_errors	TGM7	HGNC	ENSG00000159495				299	0	0	101	58	36.478
ENSG00000260406	0	genome.wustl.edu	37	15	43594352	43594352	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	43594352	43594352	G	A	SNP	ENSG00000260406	ENST00000564058	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-402F9.3	Clone_based_vega_gene	ENSG00000260406				48	0	0	24	3	11.1111
STRC	0	genome.wustl.edu	37	15	43897020	43897020	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	43897020	43897020	C	A	SNP	STRC	ENST00000450892	human	ensembl	74_37	-1	known	missense	c.3955	p.G1319W	0.869	NULL	NULL	-	no_errors	STRC	HGNC	ENSG00000242866				29	0	0	26	9	25.7143
C15orf43	0	genome.wustl.edu	37	15	45253731	45253731	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	45253731	45253731	A	G	SNP	C15orf43	ENST00000340827	human	ensembl	74_37	+1	known	silent	c.297	p.R99	1.000	NULL	NULL	-	no_errors	C15orf43	HGNC	ENSG00000167014				71	0	0	24	14	36.8421
DUOXA2	0	genome.wustl.edu	37	15	45408763	45408763	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	45408763	45408763	C	T	SNP	DUOXA2	ENST00000323030	human	ensembl	74_37	+1	known	silent	c.390	p.F130	0.992	pfam_Dual_oxidase_maturation_fac	pfam_Dual_oxidase_maturation_fac	-	no_errors	DUOXA2	HGNC	ENSG00000140274				148	1	0.671141	53	12	18.4615
BLOC1S6	0	genome.wustl.edu	37	15	45898872	45898872	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	45898872	45898872	C	T	SNP	BLOC1S6	ENST00000563160	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BLOC1S6	HGNC	ENSG00000104164				26	0	0	10	9	47.3684
FBN1	0	genome.wustl.edu	37	15	48796031	48796031	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	48796031	48796031	T	G	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.2066	p.E689A	1.000	pfam_TB_dom,superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				140	0	0	41	17	29.3103
TRPM7	0	genome.wustl.edu	37	15	50905919	50905919	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	50905919	50905919	C	T	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	silent	c.1755	p.Q585	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				30	0	0	11	8	42.1053
DMXL2	0	genome.wustl.edu	37	15	51766637	51766637	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	51766637	51766637	C	A	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.7117	p.A2373S	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				102	0	0	39	19	32.7586
UNC13C	0	genome.wustl.edu	37	15	54307549	54307549	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	54307549	54307549	C	T	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	nonsense	c.2449	p.Q817*	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				97	0	0	36	11	23.4043
LDHAL6B	0	genome.wustl.edu	37	15	59499278	59499278	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	59499278	59499278	G	A	SNP	LDHAL6B	ENST00000307144	human	ensembl	74_37	+1	known	missense	c.139	p.V47M	0.002	NULL	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHAL6B	HGNC	ENSG00000171989				97	0	0	55	18	24.6575
LDHAL6B	0	genome.wustl.edu	37	15	59499291	59499291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	59499291	59499291	C	T	SNP	LDHAL6B	ENST00000307144	human	ensembl	74_37	+1	known	missense	c.152	p.A51V	0.837	NULL	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHAL6B	HGNC	ENSG00000171989				105	0	0	55	22	28.5714
RORA	0	genome.wustl.edu	37	15	60803702	60803702	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	60803702	60803702	C	T	SNP	RORA	ENST00000261523	human	ensembl	74_37	-1	known	silent	c.642	p.P214	0.996	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORA	HGNC	ENSG00000069667				142	0	0	64	33	34.0206
HERC1	0	genome.wustl.edu	37	15	64045263	64045263	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	64045263	64045263	G	C	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.1796	p.T599S	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				63	0	0	32	17	34.6939
PIAS1	0	genome.wustl.edu	37	15	68479948	68479948	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	68479948	68479948	G	A	SNP	PIAS1	ENST00000249636	human	ensembl	74_37	+1	known	silent	c.1731	p.S577	0.995	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS1	HGNC	ENSG00000033800				105	0	0	44	14	24.1379
THSD4	0	genome.wustl.edu	37	15	71535347	71535347	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	71535347	71535347	G	C	SNP	THSD4	ENST00000261862	human	ensembl	74_37	+1	known	missense	c.824	p.G275A	0.001	pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720				122	0	0	39	18	31.5789
SNX33	0	genome.wustl.edu	37	15	75949395	75949395	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	75949395	75949395	G	A	SNP	SNX33	ENST00000308527	human	ensembl	74_37	+1	known	missense	c.1564	p.V522M	0.991	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX33	HGNC	ENSG00000173548				85	0	0	56	23	29.1139
C15orf27	0	genome.wustl.edu	37	15	76496111	76496111	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	76496111	76496111	A	G	SNP	C15orf27	ENST00000388942	human	ensembl	74_37	+1	known	missense	c.1051	p.M351V	0.959	NULL	NULL	-	no_errors	C15orf27	HGNC	ENSG00000169758				240	0	0	76	48	38.7097
LOC645752	0	genome.wustl.edu	37	15	78212618	78212618	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	78212618	78212618	A	G	SNP	LOC645752	ENST00000567226	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	RP11-114H24.2	Clone_based_vega_gene	ENSG00000260776				66	0	0	52	6	10.3448
TMC3	0	genome.wustl.edu	37	15	81636343	81636343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	81636343	81636343	G	A	SNP	TMC3	ENST00000359440	human	ensembl	74_37	-1	known	missense	c.1562	p.A521V	1.000	pfam_TMC	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869				70	0	0	23	9	28.125
LOC283692	0	genome.wustl.edu	37	15	83360829	83360829	+	RNA	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	83360829	83360829	C	A	SNP	LOC283692	ENST00000560650	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.895	-	-	-	no_errors	RP11-752G15.3	Clone_based_vega_gene	ENSG00000259462				81	0	0	30	15	33.3333
ALPK3	0	genome.wustl.edu	37	15	85382261	85382261	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	85382261	85382261	C	T	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	missense	c.961	p.R321C	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				32	0	0	10	5	33.3333
ALPK3	0	genome.wustl.edu	37	15	85405990	85405990	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	85405990	85405990	T	C	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	silent	c.4860	p.C1620	0.001	superfamily_Kinase-like_dom,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				54	0	0	23	13	36.1111
AKAP13	0	genome.wustl.edu	37	15	86227881	86227881	+	RNA	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	86227881	86227881	T	G	SNP	AKAP13	ENST00000558092	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	AKAP13	HGNC	ENSG00000170776				24	0	0	13	6	31.5789
ZNF774	0	genome.wustl.edu	37	15	90904288	90904288	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	90904288	90904288	G	T	SNP	ZNF774	ENST00000354377	human	ensembl	74_37	+1	known	missense	c.1225	p.G409W	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF774	HGNC	ENSG00000196391				84	0	0	31	15	32.6087
CRTC3	0	genome.wustl.edu	37	15	91181743	91181743	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	91181743	91181743	G	A	SNP	CRTC3	ENST00000268184	human	ensembl	74_37	+1	known	silent	c.1332	p.P444	0.007	NULL	NULL	-	no_errors	CRTC3	HGNC	ENSG00000140577				141	0	0	48	15	23.8095
CRTC3	0	genome.wustl.edu	37	15	91185178	91185178	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	91185178	91185178	A	G	SNP	CRTC3	ENST00000268184	human	ensembl	74_37	+1	known	missense	c.1666	p.S556G	1.000	NULL	NULL	-	no_errors	CRTC3	HGNC	ENSG00000140577				194	0	0	45	13	22.4138
CHD2	0	genome.wustl.edu	37	15	93521592	93521592	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	93521592	93521592	T	C	SNP	CHD2	ENST00000557381	human	ensembl	74_37	+1	putative	silent	c.2706	p.H902	0.990	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575				115	0	0	44	25	36.2319
ARRDC4	0	genome.wustl.edu	37	15	98512505	98512505	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	98512505	98512505	G	A	SNP	ARRDC4	ENST00000268042	human	ensembl	74_37	+1	known	missense	c.778	p.A260T	0.996	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC4	HGNC	ENSG00000140450				68	0	0	35	10	22.2222
SSTR5	0	genome.wustl.edu	37	16	1129867	1129867	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	1129867	1129867	G	A	SNP	SSTR5	ENST00000293897	human	ensembl	74_37	+1	known	silent	c.999	p.T333	0.000	prints_Somatstn_rcpt_5	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt_5,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	-	no_errors	SSTR5	HGNC	ENSG00000162009				25	0	0	12	7	36.8421
KIAA0430	0	genome.wustl.edu	37	16	15704908	15704908	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	15704908	15704908	G	A	SNP	KIAA0430	ENST00000396368	human	ensembl	74_37	-1	known	silent	c.3675	p.I1225	0.001	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783				131	0	0	74	27	26.7327
ABCC6	0	genome.wustl.edu	37	16	16244559	16244559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	16244559	16244559	C	T	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	missense	c.4279	p.E1427K	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				46	0	0	14	3	17.6471
XYLT1	0	genome.wustl.edu	37	16	17235115	17235115	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	17235115	17235115	G	C	SNP	XYLT1	ENST00000261381	human	ensembl	74_37	-1	known	missense	c.1482	p.D494E	0.940	pfam_Glyco_trans_14	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT1	HGNC	ENSG00000103489				255	0	0	120	8	6.25
SMG1	0	genome.wustl.edu	37	16	18887699	18887699	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	18887699	18887699	T	C	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	missense	c.1637	p.H546R	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				25	0	0	27	3	10
DNAH3	0	genome.wustl.edu	37	16	20990771	20990771	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	20990771	20990771	A	G	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.7957	p.S2653P	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				120	0	0	38	29	43.2836
HS3ST2	0	genome.wustl.edu	37	16	22926453	22926453	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	22926453	22926453	T	A	SNP	HS3ST2	ENST00000261374	human	ensembl	74_37	+1	known	missense	c.674	p.I225N	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST2	HGNC	ENSG00000122254				193	0	0	81	34	29.5652
AMDHD2	0	genome.wustl.edu	37	16	2570787	2570787	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	2570787	2570787	G	T	SNP	AMDHD2	ENST00000413459	human	ensembl	74_37	+1	known	missense	c.101	p.R34L	0.997	superfamily_Metal-dep_hydrolase_composite	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite	-	no_errors	AMDHD2	HGNC	ENSG00000162066				26	0	0	20	6	23.0769
SRRM2	0	genome.wustl.edu	37	16	2818141	2818141	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	2818141	2818141	T	C	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	missense	c.7612	p.S2538P	0.022	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				48	0	0	31	4	11.4286
APOBR	0	genome.wustl.edu	37	16	28507606	28507606	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	28507606	28507606	A	G	SNP	APOBR	ENST00000564831	human	ensembl	74_37	+1	known	missense	c.1244	p.E415G	0.156	NULL	NULL	-	no_errors	APOBR	HGNC	ENSG00000184730				65	0	0	20	6	23.0769
LOC101928215	0	genome.wustl.edu	37	16	29115615	29115615	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	29115615	29115615	A	G	SNP	LOC101928215	ENST00000562618	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.345	-	-	-	no_errors	CTB-134H23.3	Clone_based_vega_gene	ENSG00000260908				14	0	0	8	12	60
SNX29P2	0	genome.wustl.edu	37	16	29323800	29323800	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	29323800	29323800	C	T	SNP	SNX29P2	ENST00000398878	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNX29P2	HGNC	ENSG00000198106				18	0	0	9	7	43.75
SPN	0	genome.wustl.edu	37	16	29675887	29675887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	29675887	29675887	C	T	SNP	SPN	ENST00000360121	human	ensembl	74_37	+1	known	missense	c.838	p.R280W	0.003	NULL	NULL	-	no_errors	SPN	HGNC	ENSG00000197471				33	0	0	15	12	44.4444
PKMYT1	0	genome.wustl.edu	37	16	3024375	3024375	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	3024375	3024375	C	T	SNP	PKMYT1	ENST00000262300	human	ensembl	74_37	-1	known	silent	c.1023	p.E341	0.981	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr/Thr_kinase_Cdc2_inhib,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr/Thr_kinase_Cdc2_inhib,pfscan_Prot_kinase_dom	-	no_errors	PKMYT1	HGNC	ENSG00000127564				25	0	0	14	3	17.6471
ZNF629	0	genome.wustl.edu	37	16	30794413	30794413	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	30794413	30794413	G	A	SNP	ZNF629	ENST00000262525	human	ensembl	74_37	-1	known	silent	c.1236	p.S412	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870				80	0	0	36	12	25
SETD1A	0	genome.wustl.edu	37	16	30976311	30976311	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	30976311	30976311	G	A	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	silent	c.1248	p.E416	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				165	0	0	65	26	28.5714
HSD3B7	0	genome.wustl.edu	37	16	30998198	30998198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	30998198	30998198	G	A	SNP	HSD3B7	ENST00000297679	human	ensembl	74_37	+1	known	missense	c.569	p.R190H	1.000	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,pfam_dTDP_dehydrorham_reduct,pfam_NmrA	-	no_errors	HSD3B7	HGNC	ENSG00000099377				95	0	0	34	8	19.0476
ZNF668	0	genome.wustl.edu	37	16	31072541	31072541	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	31072541	31072541	G	A	SNP	ZNF668	ENST00000426488	human	ensembl	74_37	-1	known	missense	c.1777	p.R593C	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394				178	0	0	64	8	11.1111
ZNF646	0	genome.wustl.edu	37	16	31088810	31088810	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	31088810	31088810	C	A	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.1165	p.L389I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				29	0	0	15	9	37.5
ITGAX	0	genome.wustl.edu	37	16	31373508	31373508	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	31373508	31373508	T	C	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	missense	c.1199	p.M400T	0.998	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678				182	0	0	62	32	34.0426
RGS11	0	genome.wustl.edu	37	16	320824	320824	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	320824	320824	T	G	SNP	RGS11	ENST00000397770	human	ensembl	74_37	-1	known	missense	c.986	p.N329T	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS11	HGNC	ENSG00000076344				31	0	0	11	3	21.4286
OR1F1	0	genome.wustl.edu	37	16	3254534	3254534	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	3254534	3254534	C	T	SNP	OR1F1	ENST00000304646	human	ensembl	74_37	+1	known	silent	c.288	p.G96	0.437	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1F1	HGNC	ENSG00000168124				283	0	0	112	52	31.7073
SLC6A10P	0	genome.wustl.edu	37	16	32893940	32893940	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	32893940	32893940	G	A	SNP	SLC6A10P	ENST00000330048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617				415	0	0	154	25	13.9665
TMEM8A	0	genome.wustl.edu	37	16	424064	424064	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	424064	424064	C	A	SNP	TMEM8A	ENST00000431232	human	ensembl	74_37	-1	known	missense	c.1843	p.G615W	0.980	pfam_DUF3522	pfam_DUF3522,pfscan_EG-like_dom	-	no_errors	TMEM8A	HGNC	ENSG00000129925				55	0	0	13	9	40.9091
NETO2	0	genome.wustl.edu	37	16	47162394	47162394	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	47162394	47162394	C	T	SNP	NETO2	ENST00000562435	human	ensembl	74_37	-1	known	missense	c.323	p.R108Q	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO2	HGNC	ENSG00000171208				352	2	0.564972	134	60	30.9278
PHKB	0	genome.wustl.edu	37	16	47533705	47533705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	47533705	47533705	G	A	SNP	PHKB	ENST00000299167	human	ensembl	74_37	+1	known	missense	c.205	p.G69S	1.000	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKB	HGNC	ENSG00000102893				187	0	0	106	6	5.35714
CBLN1	0	genome.wustl.edu	37	16	49315156	49315156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	49315156	49315156	G	A	SNP	CBLN1	ENST00000219197	human	ensembl	74_37	-1	known	missense	c.221	p.P74L	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN1	HGNC	ENSG00000102924				109	0	0	34	18	34.6154
PAPD5	0	genome.wustl.edu	37	16	50263343	50263343	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	50263343	50263343	C	T	SNP	PAPD5	ENST00000573002	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.978	-	-	-	no_errors	PAPD5	HGNC	ENSG00000121274				21	0	0	11	8	42.1053
BRD7	0	genome.wustl.edu	37	16	50357600	50357600	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	50357600	50357600	C	T	SNP	BRD7	ENST00000394689	human	ensembl	74_37	-1	known	silent	c.1341	p.E447	1.000	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164				61	0	0	32	11	25.5814
CYLD	0	genome.wustl.edu	37	16	50813911	50813911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	50813911	50813911	G	A	SNP	CYLD	ENST00000311559	human	ensembl	74_37	+1	known	missense	c.1474	p.G492S	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Peptidase_C19/C67,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19/C67	-	no_errors	CYLD	HGNC	ENSG00000083799				112	0	0	49	13	20.9677
FAM86A	0	genome.wustl.edu	37	16	5141836	5141836	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	5141836	5141836	T	C	SNP	FAM86A	ENST00000427587	human	ensembl	74_37	-1	known	missense	c.301	p.M101V	0.006	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86A	HGNC	ENSG00000118894				82	0	0	30	12	28.5714
RBL2	0	genome.wustl.edu	37	16	53493431	53493431	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	53493431	53493431	G	A	SNP	RBL2	ENST00000262133	human	ensembl	74_37	+1	known	silent	c.1248	p.V416	1.000	NULL	pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL2	HGNC	ENSG00000103479				70	0	0	20	11	35.4839
RPGRIP1L	0	genome.wustl.edu	37	16	53683005	53683005	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	53683005	53683005	A	T	SNP	RPGRIP1L	ENST00000379925	human	ensembl	74_37	-1	known	missense	c.2175	p.N725K	0.422	pfam_DUF3250	pfam_DUF3250,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494				130	0	0	53	30	36.1446
SLC12A3	0	genome.wustl.edu	37	16	56912999	56912999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	56912999	56912999	C	T	SNP	SLC12A3	ENST00000438926	human	ensembl	74_37	+1	known	missense	c.1195	p.R399C	0.871	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915				21	0	0	10	5	33.3333
NLRC5	0	genome.wustl.edu	37	16	57110758	57110758	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	57110758	57110758	C	T	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	silent	c.4779	p.V1593	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				129	0	0	37	13	26
POLR2C	0	genome.wustl.edu	37	16	57503194	57503194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	57503194	57503194	C	T	SNP	POLR2C	ENST00000219252	human	ensembl	74_37	+1	known	missense	c.376	p.R126W	1.000	pfam_DNA-dir_RNA_pol_insert,pfam_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	pfam_DNA-dir_RNA_pol_insert,pfam_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR2C	HGNC	ENSG00000102978				73	0	0	30	17	36.1702
CNGB1	0	genome.wustl.edu	37	16	57996884	57996884	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	57996884	57996884	C	T	SNP	CNGB1	ENST00000251102	human	ensembl	74_37	-1	known	silent	c.375	p.P125	0.000	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729				79	0	0	33	15	31.25
MMP15	0	genome.wustl.edu	37	16	58075662	58075662	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	58075662	58075662	G	C	SNP	MMP15	ENST00000219271	human	ensembl	74_37	+1	known	missense	c.1052	p.G351A	0.983	pirsf_Pept_M10A_Metazoans	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP15	HGNC	ENSG00000102996				18	0	0	10	5	33.3333
PRSS54	0	genome.wustl.edu	37	16	58314324	58314324	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	58314324	58314324	T	C	SNP	PRSS54	ENST00000219301	human	ensembl	74_37	-1	known	missense	c.992	p.D331G	0.000	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	-	no_errors	PRSS54	HGNC	ENSG00000103023				118	0	0	47	33	41.25
CNOT1	0	genome.wustl.edu	37	16	58608623	58608623	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	58608623	58608623	C	T	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	silent	c.1869	p.R623	0.998	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				95	0	0	60	4	6.25
PIGQ	0	genome.wustl.edu	37	16	628430	628430	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	628430	628430	G	A	SNP	PIGQ	ENST00000026218	human	ensembl	74_37	+1	known	missense	c.994	p.A332T	0.999	pfam_GlcNAc_Gpi1	pfam_GlcNAc_Gpi1	-	no_errors	PIGQ	HGNC	ENSG00000007541				61	0	0	28	9	24.3243
SLC12A4	0	genome.wustl.edu	37	16	67980239	67980239	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	67980239	67980239	G	T	SNP	SLC12A4	ENST00000338335	human	ensembl	74_37	-1	known	missense	c.2246	p.P749Q	0.867	NULL	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,prints_K/Cl_cotranspt1	-	no_errors	SLC12A4	HGNC	ENSG00000124067				90	0	0	42	24	36.3636
WWP2	0	genome.wustl.edu	37	16	69963383	69963383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	69963383	69963383	G	A	SNP	WWP2	ENST00000356003	human	ensembl	74_37	+1	known	missense	c.1267	p.V423M	1.000	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	WWP2	HGNC	ENSG00000198373				105	0	0	23	12	34.2857
ZFHX3	0	genome.wustl.edu	37	16	72822729	72822729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	72822729	72822729	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.9446	p.P3149L	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				225	0	0	64	31	32.6316
ZFHX3	0	genome.wustl.edu	37	16	72991721	72991721	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	72991721	72991721	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.2324	p.A775V	0.973	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				106	0	0	49	19	27.9412
CHST6	0	genome.wustl.edu	37	16	75512632	75512632	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	75512632	75512632	G	A	SNP	CHST6	ENST00000332272	human	ensembl	74_37	-1	known	silent	c.1095	p.D365	0.003	pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST6	HGNC	ENSG00000183196				118	1	0.840336	29	9	23.6842
CDYL2	0	genome.wustl.edu	37	16	80667008	80667008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	80667008	80667008	G	A	SNP	CDYL2	ENST00000570137	human	ensembl	74_37	-1	known	missense	c.742	p.R248W	1.000	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446				168	0	0	58	26	30.9524
CDYL2	0	genome.wustl.edu	37	16	80718567	80718567	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	80718567	80718567	C	T	SNP	CDYL2	ENST00000570137	human	ensembl	74_37	-1	known	missense	c.484	p.G162S	0.000	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446				160	1	0.621118	59	26	30.5882
ZFPM1	0	genome.wustl.edu	37	16	88598420	88598420	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	88598420	88598420	C	T	SNP	ZFPM1	ENST00000319555	human	ensembl	74_37	+1	known	silent	c.723	p.F241	0.999	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM1	HGNC	ENSG00000179588				125	0	0	41	16	28.0702
ZFPM1	0	genome.wustl.edu	37	16	88599306	88599306	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	88599306	88599306	G	A	SNP	ZFPM1	ENST00000319555	human	ensembl	74_37	+1	known	silent	c.1152	p.S384	0.012	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM1	HGNC	ENSG00000179588				75	0	0	43	17	28.3333
ZNF778	0	genome.wustl.edu	37	16	89293501	89293501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	89293501	89293501	G	A	SNP	ZNF778	ENST00000433976	human	ensembl	74_37	+1	known	missense	c.721	p.A241T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF778	HGNC	ENSG00000170100				186	0	0	64	26	28.8889
ZNF778	0	genome.wustl.edu	37	16	89294007	89294007	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	89294007	89294007	T	C	SNP	ZNF778	ENST00000433976	human	ensembl	74_37	+1	known	silent	c.1227	p.T409	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF778	HGNC	ENSG00000170100				130	0	0	55	25	31.25
MC1R	0	genome.wustl.edu	37	16	89985930	89985930	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	89985930	89985930	C	T	SNP	MC1R	ENST00000555147	human	ensembl	74_37	+1	known	silent	c.264	p.S88	0.017	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MSH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC1R	HGNC	ENSG00000258839				97	0	0	29	12	29.2683
GAS7	0	genome.wustl.edu	37	17	10101644	10101644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	10101644	10101644	G	A	SNP	GAS7	ENST00000432992	human	ensembl	74_37	-1	known	missense	c.64	p.R22C	0.994	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_FCH_dom,pfam_WW_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_WW_dom,smart_SH3_domain,smart_WW_dom,smart_FCH_dom,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_WW_dom	-	no_errors	GAS7	HGNC	ENSG00000007237				43	0	0	15	8	34.7826
MYH2	0	genome.wustl.edu	37	17	10441138	10441138	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	10441138	10441138	C	A	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.1431	p.E477D	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				203	0	0	70	47	40.1709
ZNF18	0	genome.wustl.edu	37	17	11886718	11886718	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	11886718	11886718	A	G	SNP	ZNF18	ENST00000322748	human	ensembl	74_37	-1	known	missense	c.758	p.I253T	1.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF18	HGNC	ENSG00000154957				104	0	0	36	21	36.8421
MYO1C	0	genome.wustl.edu	37	17	1387489	1387489	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	1387489	1387489	C	T	SNP	MYO1C	ENST00000359786	human	ensembl	74_37	-1	known	missense	c.184	p.A62T	0.999	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1C	HGNC	ENSG00000197879				53	0	0	19	5	20.8333
TEKT3	0	genome.wustl.edu	37	17	15212064	15212064	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	15212064	15212064	G	A	SNP	TEKT3	ENST00000338696	human	ensembl	74_37	-1	known	silent	c.1173	p.A391	0.989	pfam_Tektin,prints_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT3	HGNC	ENSG00000125409				135	0	0	60	21	25.9259
ZNF286A	0	genome.wustl.edu	37	17	15620464	15620464	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	15620464	15620464	A	G	SNP	ZNF286A	ENST00000413242	human	ensembl	74_37	+1	known	missense	c.1426	p.I476V	0.972	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF286A	HGNC	ENSG00000255104				61	0	0	25	9	26.4706
WDR81	0	genome.wustl.edu	37	17	1636825	1636825	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	1636825	1636825	C	T	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	silent	c.4494	p.D1498	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				283	0	0	92	41	30.8271
ZNF624	0	genome.wustl.edu	37	17	16526577	16526577	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	16526577	16526577	T	C	SNP	ZNF624	ENST00000311331	human	ensembl	74_37	-1	known	silent	c.1623	p.S541	0.852	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566				137	0	0	76	25	24.7525
KRT17P1	0	genome.wustl.edu	37	17	16748802	16748802	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	16748802	16748802	C	T	SNP	KRT17P1	ENST00000580363	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KRT17P1	HGNC	ENSG00000131885				27	0	0	31	8	20.5128
RPH3AL	0	genome.wustl.edu	37	17	171135	171135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	171135	171135	G	A	SNP	RPH3AL	ENST00000331302	human	ensembl	74_37	-1	known	missense	c.149	p.A50V	0.001	pfam_Znf_FYVE-typ,superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	pfam_Znf_FYVE-typ,superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RPH3AL	HGNC	ENSG00000181031				123	0	0	36	12	25
ATPAF2	0	genome.wustl.edu	37	17	17931621	17931621	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	17931621	17931621	G	A	SNP	ATPAF2	ENST00000474627	human	ensembl	74_37	-1	known	silent	c.249	p.S83	0.350	pfam_ATP12_ATPase-F1F0-assembly	pfam_ATP12_ATPase-F1F0-assembly	-	no_errors	ATPAF2	HGNC	ENSG00000171953				66	0	0	41	15	26.7857
ALKBH5	0	genome.wustl.edu	37	17	18111551	18111551	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	18111551	18111551	G	T	SNP	ALKBH5	ENST00000399138	human	ensembl	74_37	+1	known	missense	c.1026	p.M342I	1.000	NULL	NULL	-	no_errors	ALKBH5	HGNC	ENSG00000091542				163	0	0	62	36	36.7347
TMEM11	0	genome.wustl.edu	37	17	21101693	21101693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	21101693	21101693	C	T	SNP	TMEM11	ENST00000317635	human	ensembl	74_37	-1	known	missense	c.523	p.A175T	1.000	NULL	NULL	-	no_errors	TMEM11	HGNC	ENSG00000178307				225	0	0	118	7	5.6
SGSM2	0	genome.wustl.edu	37	17	2266394	2266394	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	2266394	2266394	G	A	SNP	SGSM2	ENST00000268989	human	ensembl	74_37	+1	known	missense	c.638	p.R213H	0.988	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258				23	0	0	13	14	51.8519
TNFAIP1	0	genome.wustl.edu	37	17	26666694	26666694	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	26666694	26666694	C	T	SNP	TNFAIP1	ENST00000226225	human	ensembl	74_37	+1	known	silent	c.147	p.H49	0.823	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	TNFAIP1	HGNC	ENSG00000109079				157	1	0.632911	45	29	39.1892
TLCD1	0	genome.wustl.edu	37	17	27052964	27052964	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	27052964	27052964	G	C	SNP	TLCD1	ENST00000292090	human	ensembl	74_37	-1	known	missense	c.152	p.S51C	1.000	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	TLCD1	HGNC	ENSG00000160606				46	0	0	19	7	26.9231
TLCD1	0	genome.wustl.edu	37	17	27053070	27053070	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	27053070	27053070	T	C	SNP	TLCD1	ENST00000292090	human	ensembl	74_37	-1	known	missense	c.46	p.T16A	1.000	NULL	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	TLCD1	HGNC	ENSG00000160606				9	0	0	5	3	37.5
MYO18A	0	genome.wustl.edu	37	17	27446421	27446421	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	27446421	27446421	C	T	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	silent	c.1761	p.R587	0.914	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,pfscan_RecA_monomer-monomer_interface	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				43	0	0	10	5	33.3333
ZNF207	0	genome.wustl.edu	37	17	30687715	30687715	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	30687715	30687715	C	T	SNP	ZNF207	ENST00000394670	human	ensembl	74_37	+1	known	nonsense	c.406	p.Q136*	1.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF207	HGNC	ENSG00000010244				77	0	0	33	8	19.5122
GAS2L2	0	genome.wustl.edu	37	17	34074249	34074249	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	34074249	34074249	G	T	SNP	GAS2L2	ENST00000254466	human	ensembl	74_37	-1	known	missense	c.871	p.P291T	0.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139				318	1	0.31348	118	33	21.8543
GAS2L2	0	genome.wustl.edu	37	17	34079505	34079505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	34079505	34079505	C	T	SNP	GAS2L2	ENST00000254466	human	ensembl	74_37	-1	known	missense	c.365	p.R122Q	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139				292	0	0	88	44	33.3333
PCGF2	0	genome.wustl.edu	37	17	36891730	36891730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	36891730	36891730	C	T	SNP	PCGF2	ENST00000360797	human	ensembl	74_37	-1	known	missense	c.781	p.D261N	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF2	HGNC	ENSG00000056661				13	0	0	4	4	50
STARD3	0	genome.wustl.edu	37	17	37809936	37809936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	37809936	37809936	G	A	SNP	STARD3	ENST00000336308	human	ensembl	74_37	+1	known	missense	c.152	p.R51H	1.000	pfam_MENTAL	pfam_MENTAL,pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,prints_StAR	-	no_errors	STARD3	HGNC	ENSG00000131748				106	0	0	33	12	26.6667
MED24	0	genome.wustl.edu	37	17	38175815	38175815	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	38175815	38175815	G	A	SNP	MED24	ENST00000394128	human	ensembl	74_37	-1	known	silent	c.2937	p.R979	1.000	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838				105	0	0	53	20	27.3973
MED24	0	genome.wustl.edu	37	17	38176148	38176148	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	38176148	38176148	G	A	SNP	MED24	ENST00000394128	human	ensembl	74_37	-1	known	missense	c.2743	p.R915C	0.839	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838				13	0	0	8	4	33.3333
KRT27	0	genome.wustl.edu	37	17	38936017	38936017	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	38936017	38936017	G	A	SNP	KRT27	ENST00000301656	human	ensembl	74_37	-1	known	nonsense	c.781	p.R261*	1.000	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT27	HGNC	ENSG00000171446				82	0	0	35	16	31.3725
KRT39	0	genome.wustl.edu	37	17	39115014	39115014	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	39115014	39115014	A	C	SNP	KRT39	ENST00000355612	human	ensembl	74_37	-1	known	missense	c.1315	p.S439A	0.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT39	HGNC	ENSG00000196859				108	0	0	43	23	34.8485
ZZEF1	0	genome.wustl.edu	37	17	3967836	3967836	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	3967836	3967836	C	T	SNP	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	missense	c.4537	p.A1513T	0.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				107	0	0	48	17	26.1538
KRT9	0	genome.wustl.edu	37	17	39728024	39728024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	39728024	39728024	C	T	SNP	KRT9	ENST00000246662	human	ensembl	74_37	-1	known	missense	c.221	p.G74D	0.006	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403				52	0	0	10	8	44.4444
KRT16	0	genome.wustl.edu	37	17	39767948	39767948	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	39767948	39767948	G	A	SNP	KRT16	ENST00000301653	human	ensembl	74_37	-1	known	missense	c.557	p.A186V	0.649	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT16	HGNC	ENSG00000186832				39	0	0	16	6	27.2727
AOC4P	0	genome.wustl.edu	37	17	41026210	41026210	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	41026210	41026210	C	T	SNP	AOC4P	ENST00000570207	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.839	-	-	-	no_errors	AOC4P	HGNC	ENSG00000260105				159	0	0	70	27	27.8351
DHX8	0	genome.wustl.edu	37	17	41577385	41577385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	41577385	41577385	G	A	SNP	DHX8	ENST00000262415	human	ensembl	74_37	+1	known	missense	c.1460	p.R487Q	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596				445	1	0.224215	145	77	34.6847
GRN	0	genome.wustl.edu	37	17	42430031	42430031	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	42430031	42430031	C	T	SNP	GRN	ENST00000053867	human	ensembl	74_37	+1	known	silent	c.1647	p.G549	0.000	pfam_Granulin,smart_Granulin	pfam_Granulin,smart_Granulin	-	no_errors	GRN	HGNC	ENSG00000030582				160	0	0	41	21	33.871
CRHR1	0	genome.wustl.edu	37	17	43911993	43911993	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	43911993	43911993	C	T	SNP	CRHR1	ENST00000398285	human	ensembl	74_37	+1	known	missense	c.1198	p.R400C	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF1_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR1	HGNC	ENSG00000120088				50	0	0	21	8	27.5862
MAPT	0	genome.wustl.edu	37	17	44073996	44073996	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	44073996	44073996	C	A	SNP	MAPT	ENST00000344290	human	ensembl	74_37	+1	known	missense	c.1793	p.T598N	0.994	pfam_MAP_tubulin-bd_rpt	pfam_MAP_tubulin-bd_rpt,prints_Tau	-	no_errors	MAPT	HGNC	ENSG00000186868				73	0	0	21	4	16
ITGB3	0	genome.wustl.edu	37	17	45369787	45369787	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	45369787	45369787	C	T	SNP	ITGB3	ENST00000559488	human	ensembl	74_37	+1	known	missense	c.1543	p.R515W	0.705	pirsf_Integrin_bsu,pfam_EGF_extracell	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB3	HGNC	ENSG00000259207				159	0	0	59	5	7.8125
PELP1	0	genome.wustl.edu	37	17	4607430	4607430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	4607430	4607430	C	T	SNP	PELP1	ENST00000572293	human	ensembl	74_37	-1	putative	missense	c.127	p.A43T	1.000	NULL	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456				31	0	0	7	3	30
HOXB1	0	genome.wustl.edu	37	17	46608130	46608130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	46608130	46608130	C	T	SNP	HOXB1	ENST00000239174	human	ensembl	74_37	-1	known	missense	c.137	p.G46D	0.675	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB1	HGNC	ENSG00000120094				129	0	0	39	25	39.0625
VMO1	0	genome.wustl.edu	37	17	4688833	4688833	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	4688833	4688833	G	A	SNP	VMO1	ENST00000328739	human	ensembl	74_37	-1	known	missense	c.433	p.R145C	1.000	pfam_VOMI,superfamily_VOMI	pfam_VOMI,superfamily_VOMI	-	no_errors	VMO1	HGNC	ENSG00000182853				111	0	0	27	19	41.3043
PLD2	0	genome.wustl.edu	37	17	4718006	4718006	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	4718006	4718006	G	A	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	silent	c.1173	p.A391	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				57	0	0	16	4	20
COL1A1	0	genome.wustl.edu	37	17	48275526	48275526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	48275526	48275526	G	A	SNP	COL1A1	ENST00000225964	human	ensembl	74_37	-1	known	missense	c.584	p.A195V	0.979	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821				159	0	0	44	22	33.3333
SPATA20	0	genome.wustl.edu	37	17	48628511	48628511	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	48628511	48628511	C	A	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	silent	c.1536	p.P512	0.001	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				64	0	0	12	12	50
SPATA20	0	genome.wustl.edu	37	17	48632978	48632978	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	48632978	48632978	G	A	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	silent	c.2364	p.V788	0.992	NULL	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				85	0	0	36	10	21.7391
USP6	0	genome.wustl.edu	37	17	5036240	5036240	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	5036240	5036240	G	C	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	missense	c.231	p.W77C	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				312	0	0	116	28	19.4444
ZNF594	0	genome.wustl.edu	37	17	5087271	5087271	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	5087271	5087271	G	A	SNP	ZNF594	ENST00000399604	human	ensembl	74_37	-1	known	missense	c.281	p.A94V	0.019	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626				110	0	0	57	24	29.6296
NUP88	0	genome.wustl.edu	37	17	5290124	5290124	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	5290124	5290124	T	C	SNP	NUP88	ENST00000573584	human	ensembl	74_37	-1	known	missense	c.2066	p.Q689R	0.985	pfam_Nucleoporin_Nup88	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559				148	0	0	78	5	6.0241
LPO	0	genome.wustl.edu	37	17	56344879	56344879	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	56344879	56344879	G	T	SNP	LPO	ENST00000262290	human	ensembl	74_37	+1	known	missense	c.1863	p.R621S	0.015	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419				83	0	0	16	11	40.7407
SEPT4	0	genome.wustl.edu	37	17	56604333	56604333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	56604333	56604333	G	A	SNP	SEPT4	ENST00000457347	human	ensembl	74_37	-1	known	missense	c.112	p.R38C	0.999	NULL	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	-	no_errors	SEPT4	HGNC	ENSG00000108387				126	0	0	31	24	43.6364
VMP1	0	genome.wustl.edu	37	17	57808851	57808851	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	57808851	57808851	T	C	SNP	VMP1	ENST00000262291	human	ensembl	74_37	+1	known	missense	c.44	p.M15T	1.000	NULL	NULL	-	no_errors	VMP1	HGNC	ENSG00000062716				101	0	0	31	8	20.5128
TUBD1	0	genome.wustl.edu	37	17	57944024	57944024	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	57944024	57944024	A	G	SNP	TUBD1	ENST00000325752	human	ensembl	74_37	-1	known	missense	c.1021	p.S341P	1.000	superfamily_Tub_FtsZ_C	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,prints_Delta_tubulin,prints_Tubulin,prints_Epsilon_tubulin	-	no_errors	TUBD1	HGNC	ENSG00000108423				109	0	0	30	13	30.2326
MRC2	0	genome.wustl.edu	37	17	60767425	60767425	+	Splice_Site	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	60767425	60767425	T	C	SNP	MRC2	ENST00000303375	human	ensembl	74_37	+1	known	splice_site	c.3742+2	e25+2	1.000	-	-	-	no_errors	MRC2	HGNC	ENSG00000011028				68	0	0	14	6	30
MARCH10	0	genome.wustl.edu	37	17	60813653	60813653	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	60813653	60813653	C	T	SNP	MARCH10	ENST00000311269	human	ensembl	74_37	-1	known	missense	c.1576	p.E526K	0.087	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838				164	0	0	75	38	33.6283
ACE	0	genome.wustl.edu	37	17	61570796	61570796	+	Splice_Site	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	61570796	61570796	G	A	SNP	ACE	ENST00000290866	human	ensembl	74_37	+1	known	splice_site	c.2913-1	e20-1	1.000	-	-	-	no_errors	ACE	HGNC	ENSG00000159640				118	0	0	45	15	25
SMARCD2	0	genome.wustl.edu	37	17	61912828	61912828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	61912828	61912828	C	T	SNP	SMARCD2	ENST00000448276	human	ensembl	74_37	-1	known	missense	c.667	p.A223T	0.971	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD2	HGNC	ENSG00000108604				97	0	0	29	19	39.5833
TEX2	0	genome.wustl.edu	37	17	62291159	62291159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	62291159	62291159	G	A	SNP	TEX2	ENST00000258991	human	ensembl	74_37	-1	known	missense	c.419	p.S140L	0.005	NULL	pfam_DUF2404	-	no_errors	TEX2	HGNC	ENSG00000136478				182	0	0	78	33	29.7297
AXIN2	0	genome.wustl.edu	37	17	63545650	63545650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	63545650	63545650	G	A	SNP	AXIN2	ENST00000307078	human	ensembl	74_37	-1	known	missense	c.944	p.T315M	1.000	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN2	HGNC	ENSG00000168646				35	0	0	16	4	20
PITPNM3	0	genome.wustl.edu	37	17	6371625	6371625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	6371625	6371625	C	T	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	missense	c.1810	p.A604T	0.051	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				129	0	0	42	13	23.6364
CACNG5	0	genome.wustl.edu	37	17	64880684	64880684	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	64880684	64880684	A	C	SNP	CACNG5	ENST00000169565	human	ensembl	74_37	+1	known	missense	c.476	p.E159A	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g5su	-	no_errors	CACNG5	HGNC	ENSG00000075429				91	0	0	44	22	33.3333
NOL11	0	genome.wustl.edu	37	17	65720242	65720242	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	65720242	65720242	C	T	SNP	NOL11	ENST00000253247	human	ensembl	74_37	+1	known	silent	c.597	p.D199	0.998	NULL	pfam_NUC205	-	no_errors	NOL11	HGNC	ENSG00000130935				50	0	0	27	18	40
RNMTL1	0	genome.wustl.edu	37	17	695114	695114	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	695114	695114	C	A	SNP	RNMTL1	ENST00000304478	human	ensembl	74_37	+1	known	silent	c.1068	p.G356	0.238	pfam_SpoU_MeTrfase	pfam_SpoU_MeTrfase,pfam_SpoU_subst-bd,smart_SpoU_subst-bd	-	no_errors	RNMTL1	HGNC	ENSG00000171861				137	0	0	53	22	29.3333
PHF23	0	genome.wustl.edu	37	17	7139475	7139475	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	7139475	7139475	T	C	SNP	PHF23	ENST00000320316	human	ensembl	74_37	-1	known	silent	c.771	p.E257	0.033	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF23	HGNC	ENSG00000040633				151	0	0	80	44	35.4839
CD300C	0	genome.wustl.edu	37	17	72540750	72540750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	72540750	72540750	G	A	SNP	CD300C	ENST00000330793	human	ensembl	74_37	-1	known	missense	c.398	p.P133L	0.999	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300C	HGNC	ENSG00000167850				93	0	0	37	11	22.9167
GGA3	0	genome.wustl.edu	37	17	73235069	73235069	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	73235069	73235069	C	G	SNP	GGA3	ENST00000245541	human	ensembl	74_37	-1	known	missense	c.1876	p.V626L	1.000	pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA3	HGNC	ENSG00000125447				94	0	0	34	14	29.1667
GGA3	0	genome.wustl.edu	37	17	73236985	73236985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	73236985	73236985	C	T	SNP	GGA3	ENST00000245541	human	ensembl	74_37	-1	known	missense	c.1100	p.R367Q	0.937	NULL	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA3	HGNC	ENSG00000125447				60	0	0	26	17	39.5349
EXOC7	0	genome.wustl.edu	37	17	74084972	74084972	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	74084972	74084972	C	A	SNP	EXOC7	ENST00000335146	human	ensembl	74_37	-1	known	missense	c.1233	p.E411D	1.000	pfam_Exo70,superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473				89	0	0	25	25	50
FOXJ1	0	genome.wustl.edu	37	17	74134113	74134113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	74134113	74134113	C	T	SNP	FOXJ1	ENST00000322957	human	ensembl	74_37	-1	known	missense	c.587	p.R196H	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ1	HGNC	ENSG00000129654				40	0	0	22	10	31.25
SENP3	0	genome.wustl.edu	37	17	7466636	7466636	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	7466636	7466636	G	A	SNP	SENP3	ENST00000429205	human	ensembl	74_37	+1	known	silent	c.243	p.E81	0.992	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP3	HGNC	ENSG00000161956				8	0	0	1	3	75
MGAT5B	0	genome.wustl.edu	37	17	74902116	74902116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	74902116	74902116	G	A	SNP	MGAT5B	ENST00000428789	human	ensembl	74_37	+1	known	missense	c.905	p.G302D	1.000	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MGAT5B	HGNC	ENSG00000167889				129	0	0	43	12	21.8182
MGAT5B	0	genome.wustl.edu	37	17	74942514	74942514	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	74942514	74942514	C	T	SNP	MGAT5B	ENST00000428789	human	ensembl	74_37	+1	known	silent	c.1932	p.H644	0.953	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MGAT5B	HGNC	ENSG00000167889				56	0	0	12	5	29.4118
ATP1B2	0	genome.wustl.edu	37	17	7559161	7559161	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	7559161	7559161	G	A	SNP	ATP1B2	ENST00000250111	human	ensembl	74_37	+1	known	missense	c.821	p.R274Q	1.000	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	-	no_errors	ATP1B2	HGNC	ENSG00000129244				100	0	0	45	14	23.7288
WRAP53	0	genome.wustl.edu	37	17	7606723	7606723	+	Silent	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	7606723	7606723	G	C	SNP	WRAP53	ENST00000316024	human	ensembl	74_37	+1	known	silent	c.1566	p.A522	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499				110	0	0	27	18	40
TMC6	0	genome.wustl.edu	37	17	76117721	76117721	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	76117721	76117721	C	T	SNP	TMC6	ENST00000322914	human	ensembl	74_37	-1	known	silent	c.1299	p.V433	0.003	NULL	pfam_TMC	-	no_errors	TMC6	HGNC	ENSG00000141524				42	0	0	7	3	30
USP36	0	genome.wustl.edu	37	17	76825015	76825015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	76825015	76825015	C	T	SNP	USP36	ENST00000312010	human	ensembl	74_37	-1	known	missense	c.550	p.A184T	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP36	HGNC	ENSG00000055483				87	0	0	21	8	27.5862
ENGASE	0	genome.wustl.edu	37	17	77075659	77075659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	77075659	77075659	G	A	SNP	ENGASE	ENST00000579016	human	ensembl	74_37	+1	known	missense	c.505	p.V169I	0.988	pfam_Glyco_hydro_85	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280				218	0	0	98	34	25.7576
RNF213	0	genome.wustl.edu	37	17	78320825	78320825	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	78320825	78320825	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.8690	p.G2897D	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				56	0	0	20	10	33.3333
TRAPPC1	0	genome.wustl.edu	37	17	7834015	7834015	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	7834015	7834015	G	A	SNP	TRAPPC1	ENST00000303731	human	ensembl	74_37	-1	known	missense	c.347	p.P116L	0.060	pfam_Sybindin,superfamily_Longin-like_dom	pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC1	HGNC	ENSG00000170043				75	0	0	31	15	32.6087
RNF213	0	genome.wustl.edu	37	17	78346918	78346918	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	78346918	78346918	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.12895	p.G4299S	0.096	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				65	0	0	23	14	37.8378
ALOXE3	0	genome.wustl.edu	37	17	8013440	8013440	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	8013440	8013440	G	T	SNP	ALOXE3	ENST00000318227	human	ensembl	74_37	-1	known	silent	c.1671	p.R557	0.902	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148				35	0	0	23	4	14.8148
RAB40B	0	genome.wustl.edu	37	17	80616484	80616484	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	80616484	80616484	C	T	SNP	RAB40B	ENST00000571995	human	ensembl	74_37	-1	known	missense	c.448	p.V150M	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,pfscan_SOCS_C,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40B	HGNC	ENSG00000141542				108	0	0	32	20	38.4615
TBCD	0	genome.wustl.edu	37	17	80885144	80885144	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	80885144	80885144	C	A	SNP	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	missense	c.2554	p.L852M	0.223	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556				42	0	0	25	6	19.3548
RNMT	0	genome.wustl.edu	37	18	13731813	13731813	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	13731813	13731813	A	C	SNP	RNMT	ENST00000262173	human	ensembl	74_37	+1	known	missense	c.297	p.E99D	0.399	pirsf_mRNA_G-N7_MeTrfase	pfam_mRNA_G-N7_MeTrfase_dom,pfam_Methyltransf_11,pirsf_mRNA_G-N7_MeTrfase	-	no_errors	RNMT	HGNC	ENSG00000101654				141	0	0	57	27	32.1429
ZNF519	0	genome.wustl.edu	37	18	14105975	14105975	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	14105975	14105975	T	C	SNP	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	silent	c.564	p.K188	0.184	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322				51	0	0	28	15	34.8837
CXADRP3	0	genome.wustl.edu	37	18	14478622	14478622	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	14478622	14478622	T	C	SNP	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.407	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766				21	0	0	16	6	27.2727
CTAGE1	0	genome.wustl.edu	37	18	19995559	19995559	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	19995559	19995559	A	G	SNP	CTAGE1	ENST00000391403	human	ensembl	74_37	-1	known	missense	c.2216	p.F739S	0.000	NULL	NULL	-	no_errors	CTAGE1	HGNC	ENSG00000212710				53	0	0	27	14	34.1463
IMPACT	0	genome.wustl.edu	37	18	22008870	22008870	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	22008870	22008870	C	A	SNP	IMPACT	ENST00000284202	human	ensembl	74_37	+1	known	missense	c.203	p.P68H	1.000	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	pfam_Impact_N,pfam_RWD-domain,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	-	no_errors	IMPACT	HGNC	ENSG00000154059				62	0	0	21	5	19.2308
ZNF521	0	genome.wustl.edu	37	18	22804319	22804319	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	22804319	22804319	T	C	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.3563	p.Q1188R	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				122	0	0	51	28	35.443
KLHL14	0	genome.wustl.edu	37	18	30257165	30257165	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	30257165	30257165	A	G	SNP	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	missense	c.1717	p.Y573H	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				277	0	0	100	29	22.4806
SLC39A6	0	genome.wustl.edu	37	18	33694127	33694127	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	33694127	33694127	G	A	SNP	SLC39A6	ENST00000269187	human	ensembl	74_37	-1	known	silent	c.1776	p.V592	0.866	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424				109	0	0	40	13	24.5283
FHOD3	0	genome.wustl.edu	37	18	34349297	34349297	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	34349297	34349297	T	A	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.4145	p.I1382N	1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				116	0	0	43	12	21.8182
PIK3C3	0	genome.wustl.edu	37	18	39637886	39637886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	39637886	39637886	G	A	SNP	PIK3C3	ENST00000262039	human	ensembl	74_37	+1	known	missense	c.2303	p.R768Q	0.999	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142				93	0	0	42	19	31.1475
SLC14A2	0	genome.wustl.edu	37	18	43207012	43207012	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	43207012	43207012	A	G	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	missense	c.421	p.I141V	1.000	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				189	0	0	59	37	38.5417
CCDC11	0	genome.wustl.edu	37	18	47777861	47777861	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	47777861	47777861	G	A	SNP	CCDC11	ENST00000398545	human	ensembl	74_37	-1	known	missense	c.767	p.A256V	0.881	NULL	NULL	-	no_errors	CCDC11	HGNC	ENSG00000172361				106	0	0	68	26	27.6596
EPB41L3	0	genome.wustl.edu	37	18	5415928	5415928	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	5415928	5415928	G	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	silent	c.1956	p.Y652	0.916	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				118	0	0	44	14	24.1379
NEDD4L	0	genome.wustl.edu	37	18	56008369	56008369	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	56008369	56008369	C	T	SNP	NEDD4L	ENST00000400345	human	ensembl	74_37	+1	known	nonsense	c.1225	p.R409*	1.000	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759				39	0	0	9	5	35.7143
TMEM200C	0	genome.wustl.edu	37	18	5891837	5891837	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	5891837	5891837	G	T	SNP	TMEM200C	ENST00000383490	human	ensembl	74_37	-1	known	missense	c.226	p.P76T	1.000	pfam_DUF2371_TMEM200	pfam_DUF2371_TMEM200	-	no_errors	TMEM200C	HGNC	ENSG00000206432				55	0	0	12	11	47.8261
CDH20	0	genome.wustl.edu	37	18	59158026	59158026	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	59158026	59158026	C	T	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	silent	c.240	p.V80	0.344	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				162	0	0	67	17	20.2381
RTTN	0	genome.wustl.edu	37	18	67869182	67869182	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	67869182	67869182	A	G	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	silent	c.435	p.F145	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				58	0	0	21	9	30
LAMA1	0	genome.wustl.edu	37	18	7037643	7037643	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	7037643	7037643	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.1671	p.T557	0.001	pfscan_Laminin_B_type_IV	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				105	0	0	39	18	31.5789
NETO1	0	genome.wustl.edu	37	18	70417577	70417577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	70417577	70417577	G	A	SNP	NETO1	ENST00000327305	human	ensembl	74_37	-1	known	missense	c.1261	p.R421W	1.000	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342				66	0	0	39	17	30.3571
CNDP2	0	genome.wustl.edu	37	18	72185805	72185805	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	72185805	72185805	C	T	SNP	CNDP2	ENST00000324262	human	ensembl	74_37	+1	known	silent	c.1140	p.H380	0.654	pfam_Peptidase_M20,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP2	HGNC	ENSG00000133313				172	0	0	52	25	32.4675
SALL3	0	genome.wustl.edu	37	18	76753717	76753717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	76753717	76753717	G	A	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.1726	p.G576S	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				25	0	0	16	7	30.4348
ATP9B	0	genome.wustl.edu	37	18	77090075	77090075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	77090075	77090075	G	A	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	missense	c.1999	p.V667M	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				106	0	0	34	12	26.087
ADNP2	0	genome.wustl.edu	37	18	77895658	77895658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	77895658	77895658	C	T	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	missense	c.2362	p.H788Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				198	0	0	115	9	7.25806
COL5A3	0	genome.wustl.edu	37	19	10077289	10077289	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	10077289	10077289	C	T	SNP	COL5A3	ENST00000264828	human	ensembl	74_37	-1	known	missense	c.4592	p.R1531Q	0.142	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573				8	0	0	2	5	71.4286
ENSG00000267650	0	genome.wustl.edu	37	19	10107025	10107025	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	10107025	10107025	C	T	SNP	ENSG00000267650	ENST00000592332	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CTD-2553C6.1	Clone_based_vega_gene	ENSG00000267650				21	0	0	15	5	25
CDC37	0	genome.wustl.edu	37	19	10504054	10504054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	10504054	10504054	G	A	SNP	CDC37	ENST00000222005	human	ensembl	74_37	-1	known	missense	c.790	p.R264W	1.000	pfam_Cdc37_Hsp90-bd	pfam_Cdc37_Hsp90-bd,pfam_Cdc37_N_dom,pfam_Cdc37_C	-	no_errors	CDC37	HGNC	ENSG00000105401				138	0	0	38	16	29.6296
ABCA7	0	genome.wustl.edu	37	19	1056183	1056183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	1056183	1056183	C	T	SNP	ABCA7	ENST00000263094	human	ensembl	74_37	+1	known	missense	c.4357	p.R1453C	0.372	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687				58	0	0	22	14	38.8889
SMARCA4	0	genome.wustl.edu	37	19	11169473	11169473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	11169473	11169473	C	T	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.4639	p.R1547C	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				83	0	0	29	6	17.1429
LDLR	0	genome.wustl.edu	37	19	11213391	11213391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	11213391	11213391	G	A	SNP	LDLR	ENST00000558518	human	ensembl	74_37	+1	known	missense	c.242	p.R81H	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164				236	0	0	98	31	24.031
RAB3D	0	genome.wustl.edu	37	19	11447929	11447929	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	11447929	11447929	G	A	SNP	RAB3D	ENST00000222120	human	ensembl	74_37	-1	known	silent	c.147	p.P49	0.337	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3D	HGNC	ENSG00000105514				489	0	0	197	14	6.63507
CNN1	0	genome.wustl.edu	37	19	11660584	11660584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	11660584	11660584	G	A	SNP	CNN1	ENST00000252456	human	ensembl	74_37	+1	known	missense	c.868	p.A290T	0.009	NULL	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN1	HGNC	ENSG00000130176				146	0	0	78	6	7.14286
ZNF844	0	genome.wustl.edu	37	19	12187210	12187210	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	12187210	12187210	A	G	SNP	ZNF844	ENST00000439326	human	ensembl	74_37	+1	known	silent	c.1275	p.V425	0.970	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF844	HGNC	ENSG00000223547				89	0	0	69	6	8
MIDN	0	genome.wustl.edu	37	19	1257111	1257111	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	1257111	1257111	A	G	SNP	MIDN	ENST00000300952	human	ensembl	74_37	+1	known	missense	c.1247	p.Y416C	1.000	NULL	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	MIDN	HGNC	ENSG00000167470				57	0	0	25	12	32.4324
FBXW9	0	genome.wustl.edu	37	19	12805508	12805508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	12805508	12805508	C	T	SNP	FBXW9	ENST00000380339	human	ensembl	74_37	-1	known	missense	c.578	p.R193Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW9	HGNC	ENSG00000132004				79	0	0	37	16	30.1887
HOOK2	0	genome.wustl.edu	37	19	12882099	12882099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	12882099	12882099	G	A	SNP	HOOK2	ENST00000397668	human	ensembl	74_37	-1	known	missense	c.635	p.A212V	0.122	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_UBA-like	-	no_errors	HOOK2	HGNC	ENSG00000095066				15	0	0	7	3	30
EFNA2	0	genome.wustl.edu	37	19	1299833	1299833	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	1299833	1299833	G	A	SNP	EFNA2	ENST00000215368	human	ensembl	74_37	+1	known	silent	c.531	p.L177	1.000	superfamily_Cupredoxin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA2	HGNC	ENSG00000099617				22	0	0	3	5	62.5
CACNA1A	0	genome.wustl.edu	37	19	13368350	13368350	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	13368350	13368350	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	silent	c.4404	p.S1468	0.135	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				9	0	0	14	3	17.6471
CACNA1A	0	genome.wustl.edu	37	19	13565925	13565925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	13565925	13565925	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.395	p.R132Q	0.933	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				228	0	0	56	38	40.4255
MUM1	0	genome.wustl.edu	37	19	1376668	1376668	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	1376668	1376668	C	T	SNP	MUM1	ENST00000586067	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MUM1	HGNC	ENSG00000160953				26	0	0	20	10	33.3333
ZSWIM4	0	genome.wustl.edu	37	19	13941742	13941742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	13941742	13941742	C	T	SNP	ZSWIM4	ENST00000254323	human	ensembl	74_37	+1	known	missense	c.2848	p.R950W	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003				99	0	0	36	21	36.8421
C19orf57	0	genome.wustl.edu	37	19	14000612	14000612	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	14000612	14000612	C	T	SNP	C19orf57	ENST00000454313	human	ensembl	74_37	-1	known	missense	c.1057	p.A353T	0.001	NULL	NULL	-	no_errors	C19orf57	HGNC	ENSG00000132016				80	0	0	25	12	32.4324
LPHN1	0	genome.wustl.edu	37	19	14269241	14269241	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	14269241	14269241	A	C	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.2288	p.V763G	1.000	pfam_DUF3497	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				78	0	0	38	17	30.9091
CD97	0	genome.wustl.edu	37	19	14507207	14507207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	14507207	14507207	G	A	SNP	CD97	ENST00000242786	human	ensembl	74_37	+1	known	missense	c.400	p.V134I	0.001	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146				167	0	0	72	18	20
OR7C1	0	genome.wustl.edu	37	19	14910543	14910543	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	14910543	14910543	T	C	SNP	OR7C1	ENST00000248073	human	ensembl	74_37	-1	known	missense	c.406	p.M136V	0.965	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7C1	HGNC	ENSG00000127530				156	0	0	83	29	25.8929
CYP4F22	0	genome.wustl.edu	37	19	15636167	15636167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	15636167	15636167	G	A	SNP	CYP4F22	ENST00000269703	human	ensembl	74_37	+1	known	missense	c.20	p.R7H	0.000	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F22	HGNC	ENSG00000171954				44	0	0	13	12	48
MBD3	0	genome.wustl.edu	37	19	1581146	1581146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	1581146	1581146	G	A	SNP	MBD3	ENST00000156825	human	ensembl	74_37	-1	known	missense	c.622	p.L208F	1.000	superfamily_ARM-type_fold	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655				60	0	0	13	9	40.9091
CYP4F11	0	genome.wustl.edu	37	19	16045144	16045144	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	16045144	16045144	A	G	SNP	CYP4F11	ENST00000248041	human	ensembl	74_37	-1	known	silent	c.75	p.V25	0.001	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903				110	0	0	20	15	42.8571
TCF3	0	genome.wustl.edu	37	19	1612308	1612308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	1612308	1612308	G	A	SNP	TCF3	ENST00000344749	human	ensembl	74_37	-1	known	missense	c.1711	p.R571C	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF3	HGNC	ENSG00000071564				107	0	0	36	16	30.7692
USHBP1	0	genome.wustl.edu	37	19	17373608	17373608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	17373608	17373608	G	A	SNP	USHBP1	ENST00000252597	human	ensembl	74_37	-1	known	missense	c.395	p.A132V	0.004	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307				128	0	0	44	30	40.5405
SLC27A1	0	genome.wustl.edu	37	19	17612144	17612144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	17612144	17612144	G	A	SNP	SLC27A1	ENST00000252595	human	ensembl	74_37	+1	known	missense	c.1699	p.A567T	0.139	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A1	HGNC	ENSG00000130304				66	0	0	38	10	20.8333
UNC13A	0	genome.wustl.edu	37	19	17743609	17743609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	17743609	17743609	C	T	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	missense	c.3674	p.R1225H	0.940	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477				110	0	0	31	18	36.7347
MAP1S	0	genome.wustl.edu	37	19	17845108	17845108	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	17845108	17845108	G	A	SNP	MAP1S	ENST00000324096	human	ensembl	74_37	+1	known	silent	c.3051	p.S1017	0.002	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479				47	0	0	21	5	19.2308
ENSG00000268032	0	genome.wustl.edu	37	19	18142008	18142008	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	18142008	18142008	C	T	SNP	ENSG00000268032	ENST00000594957	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTB-52I2.4	Clone_based_vega_gene	ENSG00000268032				98	0	0	48	13	21.3115
PDE4C	0	genome.wustl.edu	37	19	18327613	18327613	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	18327613	18327613	C	A	SNP	PDE4C	ENST00000355502	human	ensembl	74_37	-1	known	missense	c.1423	p.D475Y	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650				174	0	0	55	18	24.6575
CRLF1	0	genome.wustl.edu	37	19	18709685	18709685	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	18709685	18709685	T	C	SNP	CRLF1	ENST00000392386	human	ensembl	74_37	-1	known	missense	c.424	p.S142G	1.000	pfam_Growth/epo_recpt_lig-bind,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Growth/epo_recpt_lig-bind,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CRLF1	HGNC	ENSG00000006016				126	0	0	44	17	27.8689
TM6SF2	0	genome.wustl.edu	37	19	19381886	19381886	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	19381886	19381886	G	A	SNP	TM6SF2	ENST00000389363	human	ensembl	74_37	-1	known	silent	c.144	p.F48	0.001	NULL	pfam_Transmembrane_6/97	-	no_errors	TM6SF2	HGNC	ENSG00000213996				189	0	0	62	15	19.4805
PBX4	0	genome.wustl.edu	37	19	19675819	19675819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	19675819	19675819	G	A	SNP	PBX4	ENST00000251203	human	ensembl	74_37	-1	known	missense	c.848	p.T283M	0.198	NULL	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX4	HGNC	ENSG00000105717				438	0	0	153	66	30.137
GMIP	0	genome.wustl.edu	37	19	19749285	19749285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	19749285	19749285	C	T	SNP	GMIP	ENST00000203556	human	ensembl	74_37	-1	known	missense	c.544	p.A182T	0.576	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639				46	0	0	18	4	18.1818
IZUMO4	0	genome.wustl.edu	37	19	2099002	2099002	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	2099002	2099002	T	C	SNP	IZUMO4	ENST00000395301	human	ensembl	74_37	+1	known	silent	c.582	p.P194	0.001	NULL	NULL	-	no_errors	IZUMO4	HGNC	ENSG00000099840				199	0	0	80	22	21.5686
ZNF708	0	genome.wustl.edu	37	19	21493361	21493361	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	21493361	21493361	T	C	SNP	ZNF708	ENST00000356929	human	ensembl	74_37	-1	known	silent	c.72	p.A24	0.029	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF708	HGNC	ENSG00000182141				219	0	0	76	33	30.2752
ZNF728	0	genome.wustl.edu	37	19	23159500	23159500	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	23159500	23159500	G	T	SNP	ZNF728	ENST00000594710	human	ensembl	74_37	-1	novel	silent	c.639	p.S213	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF728	HGNC	ENSG00000269067				62	0	0	36	12	25
ZNF507	0	genome.wustl.edu	37	19	32845552	32845552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	32845552	32845552	G	A	SNP	ZNF507	ENST00000311921	human	ensembl	74_37	+1	known	missense	c.1816	p.D606N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF507	HGNC	ENSG00000168813				67	0	0	72	6	7.69231
RHPN2	0	genome.wustl.edu	37	19	33482773	33482773	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	33482773	33482773	C	T	SNP	RHPN2	ENST00000254260	human	ensembl	74_37	-1	known	missense	c.1600	p.A534T	0.052	superfamily_PDZ,smart_PDZ	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941				100	0	0	53	5	8.62069
CHST8	0	genome.wustl.edu	37	19	34263827	34263827	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	34263827	34263827	G	A	SNP	CHST8	ENST00000262622	human	ensembl	74_37	+1	known	silent	c.1134	p.S378	0.378	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST8	HGNC	ENSG00000124302				59	0	0	31	13	29.5455
PDCD2L	0	genome.wustl.edu	37	19	34916951	34916951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	34916951	34916951	C	T	SNP	PDCD2L	ENST00000246535	human	ensembl	74_37	+1	known	missense	c.1003	p.P335S	0.997	pfam_PDCD2_C	pfam_PDCD2_C	-	no_errors	PDCD2L	HGNC	ENSG00000126249				115	0	0	41	11	21.1538
FAM187B	0	genome.wustl.edu	37	19	35719208	35719208	+	Silent	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	35719208	35719208	T	G	SNP	FAM187B	ENST00000324675	human	ensembl	74_37	-1	known	silent	c.376	p.R126	0.000	NULL	NULL	-	no_errors	FAM187B	HGNC	ENSG00000177558				194	0	0	69	35	33.6538
MAG	0	genome.wustl.edu	37	19	35801066	35801066	+	Splice_Site	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	35801066	35801066	T	C	SNP	MAG	ENST00000392213	human	ensembl	74_37	+1	known	splice_site	c.1519+2	e6+2	1.000	-	-	-	no_errors	MAG	HGNC	ENSG00000105695				57	0	0	23	8	25.8065
RBM42	0	genome.wustl.edu	37	19	36128120	36128120	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	36128120	36128120	G	A	SNP	RBM42	ENST00000262633	human	ensembl	74_37	+1	known	missense	c.1196	p.R399H	0.996	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254				61	0	0	31	4	11.4286
WDR62	0	genome.wustl.edu	37	19	36558217	36558217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	36558217	36558217	G	A	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	missense	c.571	p.V191I	0.203	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				105	0	0	43	17	28.3333
MATK	0	genome.wustl.edu	37	19	3779589	3779589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	3779589	3779589	C	T	SNP	MATK	ENST00000395045	human	ensembl	74_37	-1	known	missense	c.872	p.R291H	0.919	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	MATK	HGNC	ENSG00000007264				35	0	0	19	6	24
ZNF607	0	genome.wustl.edu	37	19	38200708	38200708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	38200708	38200708	C	T	SNP	ZNF607	ENST00000355202	human	ensembl	74_37	-1	known	missense	c.25	p.G9R	0.334	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182				85	0	0	22	20	47.619
ZNF573	0	genome.wustl.edu	37	19	38230302	38230302	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	38230302	38230302	A	G	SNP	ZNF573	ENST00000590414	human	ensembl	74_37	-1	known	silent	c.1089	p.C363	0.965	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF573	HGNC	ENSG00000189144				120	1	0.826446	63	31	32.9787
SIPA1L3	0	genome.wustl.edu	37	19	38572684	38572684	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	38572684	38572684	G	A	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.479	p.G160D	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				185	0	0	47	23	32.8571
ACTN4	0	genome.wustl.edu	37	19	39218595	39218595	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	39218595	39218595	G	A	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	missense	c.2347	p.G783R	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN4	HGNC	ENSG00000130402				41	0	0	8	4	33.3333
PLEKHG2	0	genome.wustl.edu	37	19	39914556	39914556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	39914556	39914556	C	T	SNP	PLEKHG2	ENST00000409794	human	ensembl	74_37	+1	known	missense	c.2783	p.P928L	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924				118	1	0.840336	57	21	26.9231
PLEKHG2	0	genome.wustl.edu	37	19	39914847	39914847	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	39914847	39914847	A	C	SNP	PLEKHG2	ENST00000409794	human	ensembl	74_37	+1	known	missense	c.3074	p.E1025A	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924				186	0	0	74	34	31.4815
SUPT5H	0	genome.wustl.edu	37	19	39955492	39955492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	39955492	39955492	G	A	SNP	SUPT5H	ENST00000432763	human	ensembl	74_37	+1	known	missense	c.679	p.V227M	1.000	pfam_TF_Spt5_NGN-domain,smart_Transcrpt_antiterm_NusG_N_dom,pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N_dom,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235				128	0	0	46	25	35.2113
TIMM50	0	genome.wustl.edu	37	19	39971319	39971319	+	Silent	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	39971319	39971319	G	C	SNP	TIMM50	ENST00000314349	human	ensembl	74_37	+1	known	silent	c.135	p.G45	0.001	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	-	no_errors	TIMM50	HGNC	ENSG00000105197				75	0	0	38	9	19.1489
DLL3	0	genome.wustl.edu	37	19	39998592	39998592	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	39998592	39998592	G	A	SNP	DLL3	ENST00000205143	human	ensembl	74_37	+1	known	missense	c.1796	p.R599H	0.000	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DLL3	HGNC	ENSG00000090932				47	0	0	22	13	37.1429
HIPK4	0	genome.wustl.edu	37	19	40889761	40889761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	40889761	40889761	G	A	SNP	HIPK4	ENST00000291823	human	ensembl	74_37	-1	known	missense	c.751	p.R251C	0.998	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK4	HGNC	ENSG00000160396				126	1	0.787402	47	13	21.6667
SPTBN4	0	genome.wustl.edu	37	19	40993659	40993659	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	40993659	40993659	C	T	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	silent	c.225	p.L75	0.998	pirsf_Spectrin_bsu,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				82	0	0	58	12	17.1429
HNRNPUL1	0	genome.wustl.edu	37	19	41811718	41811718	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	41811718	41811718	G	A	SNP	HNRNPUL1	ENST00000392006	human	ensembl	74_37	+1	known	silent	c.2400	p.P800	0.016	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323				98	0	0	55	13	19.1176
CIC	0	genome.wustl.edu	37	19	42795827	42795827	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	42795827	42795827	G	C	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.2816	p.G939A	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				192	0	0	91	48	34.5324
TMEM145	0	genome.wustl.edu	37	19	42828932	42828932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	42828932	42828932	G	A	SNP	TMEM145	ENST00000301204	human	ensembl	74_37	+1	known	missense	c.1445	p.R482H	0.997	NULL	pfam_Intimal_thickness-rel_rcpt	-	no_errors	TMEM145	HGNC	ENSG00000167619				31	0	0	6	7	53.8462
LIPE	0	genome.wustl.edu	37	19	42914870	42914870	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	42914870	42914870	G	A	SNP	LIPE	ENST00000244289	human	ensembl	74_37	-1	known	silent	c.1008	p.G336	0.000	pfam_HSL_N	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435				57	0	0	20	30	60
TMIGD2	0	genome.wustl.edu	37	19	4298063	4298063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	4298063	4298063	G	A	SNP	TMIGD2	ENST00000301272	human	ensembl	74_37	-1	known	missense	c.326	p.A109V	0.000	smart_Ig_sub,pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	TMIGD2	HGNC	ENSG00000167664				213	0	0	92	11	10.6796
ZNF404	0	genome.wustl.edu	37	19	44377220	44377220	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	44377220	44377220	T	C	SNP	ZNF404	ENST00000587539	human	ensembl	74_37	-1	known	silent	c.1146	p.P382	0.331	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF404	HGNC	ENSG00000176222				33	0	0	42	9	17.6471
ZNF224	0	genome.wustl.edu	37	19	44611764	44611764	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	44611764	44611764	T	C	SNP	ZNF224	ENST00000336976	human	ensembl	74_37	+1	known	missense	c.1451	p.F484S	0.098	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF224	HGNC	ENSG00000267680				161	0	0	118	27	18.6207
TOMM40	0	genome.wustl.edu	37	19	45406424	45406424	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	45406424	45406424	T	C	SNP	TOMM40	ENST00000252487	human	ensembl	74_37	+1	known	nonstop	c.1084	p.*362R	1.000	NULL	pfam_Porin_Euk/Tom40	-	no_errors	TOMM40	HGNC	ENSG00000130204				112	0	0	66	7	9.58904
MARK4	0	genome.wustl.edu	37	19	45762390	45762390	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	45762390	45762390	T	C	SNP	MARK4	ENST00000262891	human	ensembl	74_37	+1	known	silent	c.195	p.I65	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	MARK4	HGNC	ENSG00000007047				66	0	0	18	20	52.6316
GIPR	0	genome.wustl.edu	37	19	46180362	46180362	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	46180362	46180362	C	A	SNP	GIPR	ENST00000590918	human	ensembl	74_37	+1	known	silent	c.789	p.G263	1.000	pfam_GPCR_2_secretin-like,prints_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,prints_GPCR_2_GIP_rcpt,prints_GPCR_2_secretin-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	GIPR	HGNC	ENSG00000010310				70	0	0	14	10	41.6667
FBXO46	0	genome.wustl.edu	37	19	46215278	46215278	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	46215278	46215278	C	T	SNP	FBXO46	ENST00000317683	human	ensembl	74_37	-1	known	silent	c.1476	p.A492	1.000	superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO46	HGNC	ENSG00000177051				36	0	0	14	4	22.2222
SYMPK	0	genome.wustl.edu	37	19	46330880	46330880	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	46330880	46330880	C	T	SNP	SYMPK	ENST00000245934	human	ensembl	74_37	-1	known	missense	c.2069	p.S690N	1.000	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755				55	0	0	21	12	36.3636
CCDC61	0	genome.wustl.edu	37	19	46519581	46519581	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	46519581	46519581	C	T	SNP	CCDC61	ENST00000263284	human	ensembl	74_37	+1	known	missense	c.1078	p.R360C	1.000	NULL	NULL	-	no_errors	CCDC61	HGNC	ENSG00000104983				75	0	0	26	3	10.3448
DPP9	0	genome.wustl.edu	37	19	4703929	4703929	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	4703929	4703929	G	A	SNP	DPP9	ENST00000262960	human	ensembl	74_37	-1	known	silent	c.738	p.G246	0.858	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP9	HGNC	ENSG00000142002				18	0	0	11	6	35.2941
CCDC9	0	genome.wustl.edu	37	19	47768157	47768157	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	47768157	47768157	G	C	SNP	CCDC9	ENST00000221922	human	ensembl	74_37	+1	known	missense	c.674	p.G225A	0.976	NULL	NULL	-	no_errors	CCDC9	HGNC	ENSG00000105321				11	0	0	1	3	75
DHX34	0	genome.wustl.edu	37	19	47880430	47880430	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	47880430	47880430	C	T	SNP	DHX34	ENST00000328771	human	ensembl	74_37	+1	known	silent	c.2673	p.Y891	1.000	pfam_DUF1605	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815				60	0	0	14	10	41.6667
ELSPBP1	0	genome.wustl.edu	37	19	48519210	48519210	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	48519210	48519210	C	A	SNP	ELSPBP1	ENST00000339841	human	ensembl	74_37	+1	known	missense	c.269	p.S90Y	0.262	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	ELSPBP1	HGNC	ENSG00000169393				103	0	0	62	23	27.0588
LIG1	0	genome.wustl.edu	37	19	48660365	48660365	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	48660365	48660365	C	T	SNP	LIG1	ENST00000263274	human	ensembl	74_37	-1	known	silent	c.276	p.P92	0.001	NULL	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_ATP-dep_C,superfamily_DNA_ligase_ATP-dep_N,superfamily_NA-bd_OB-fold,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG1	HGNC	ENSG00000105486				200	0	0	69	58	45.6693
UHRF1	0	genome.wustl.edu	37	19	4932935	4932935	+	RNA	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	4932935	4932935	C	A	SNP	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063				43	0	0	24	9	27.2727
HRC	0	genome.wustl.edu	37	19	49656780	49656780	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	49656780	49656780	T	C	SNP	HRC	ENST00000252825	human	ensembl	74_37	-1	known	missense	c.1715	p.E572G	0.726	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528				28	0	0	24	5	17.2414
SLC17A7	0	genome.wustl.edu	37	19	49938077	49938077	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	49938077	49938077	C	T	SNP	SLC17A7	ENST00000221485	human	ensembl	74_37	-1	known	missense	c.497	p.R166H	0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A7	HGNC	ENSG00000104888				52	0	0	34	6	15
BCL2L12	0	genome.wustl.edu	37	19	50173481	50173481	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	50173481	50173481	G	A	SNP	BCL2L12	ENST00000246785	human	ensembl	74_37	+1	known	silent	c.690	p.S230	0.874	NULL	NULL	-	no_errors	BCL2L12	HGNC	ENSG00000126453				47	0	0	19	10	34.4828
TSKS	0	genome.wustl.edu	37	19	50266482	50266482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	50266482	50266482	G	A	SNP	TSKS	ENST00000246801	human	ensembl	74_37	-1	known	missense	c.23	p.T8M	0.985	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467				132	0	0	53	49	48.0392
AP2A1	0	genome.wustl.edu	37	19	50270389	50270389	+	RNA	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	50270389	50270389	T	G	SNP	AP2A1	ENST00000600199	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AP2A1	HGNC	ENSG00000196961				72	0	0	27	3	10
KDM4B	0	genome.wustl.edu	37	19	5144107	5144107	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	5144107	5144107	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.2680	p.D894N	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				138	0	0	39	22	36.0656
KDM4B	0	genome.wustl.edu	37	19	5144277	5144277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	5144277	5144277	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.2755	p.V919M	0.955	smart_Tudor	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				13	0	0	7	6	46.1538
SIGLEC10	0	genome.wustl.edu	37	19	51918574	51918574	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	51918574	51918574	C	A	SNP	SIGLEC10	ENST00000339313	human	ensembl	74_37	-1	known	missense	c.1191	p.Q397H	0.001	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC10	HGNC	ENSG00000142512				94	0	0	78	17	17.8947
PTPRS	0	genome.wustl.edu	37	19	5222849	5222849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	5222849	5222849	G	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.2957	p.A986V	0.796	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				36	0	0	11	4	26.6667
PTPRS	0	genome.wustl.edu	37	19	5244269	5244269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	5244269	5244269	C	T	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.1216	p.V406I	0.969	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				80	0	0	36	11	23.4043
ZNF350	0	genome.wustl.edu	37	19	52468751	52468751	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	52468751	52468751	T	C	SNP	ZNF350	ENST00000243644	human	ensembl	74_37	-1	known	missense	c.955	p.I319V	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF350	HGNC	ENSG00000256683				150	0	0	121	25	17.1233
ZNF610	0	genome.wustl.edu	37	19	52869533	52869533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	52869533	52869533	C	T	SNP	ZNF610	ENST00000321287	human	ensembl	74_37	+1	known	missense	c.902	p.S301L	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554				70	0	0	68	13	16.0494
ZNF347	0	genome.wustl.edu	37	19	53644231	53644231	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	53644231	53644231	C	A	SNP	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	missense	c.1853	p.R618L	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937				183	1	0.543478	86	92	51.6854
ZNF765	0	genome.wustl.edu	37	19	53911306	53911306	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	53911306	53911306	G	A	SNP	ZNF765	ENST00000396408	human	ensembl	74_37	+1	known	silent	c.498	p.K166	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF765	HGNC	ENSG00000196417				172	0	0	90	30	25
NLRP12	0	genome.wustl.edu	37	19	54299272	54299272	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	54299272	54299272	C	A	SNP	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	missense	c.2939	p.C980F	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405				55	0	0	49	13	20.9677
NLRP12	0	genome.wustl.edu	37	19	54313572	54313572	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	54313572	54313572	C	T	SNP	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	silent	c.1341	p.P447	0.058	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405				204	0	0	99	103	50.9901
PRKCG	0	genome.wustl.edu	37	19	54394937	54394937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	54394937	54394937	C	T	SNP	PRKCG	ENST00000540413	human	ensembl	74_37	+1	known	missense	c.539	p.A180V	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583				243	0	0	92	93	50.2703
PRKCG	0	genome.wustl.edu	37	19	54401306	54401306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	54401306	54401306	C	T	SNP	PRKCG	ENST00000540413	human	ensembl	74_37	+1	known	missense	c.1033	p.R345C	1.000	pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583				106	0	0	50	79	61.2403
ZNRF4	0	genome.wustl.edu	37	19	5456563	5456563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	5456563	5456563	C	T	SNP	ZNRF4	ENST00000222033	human	ensembl	74_37	+1	known	missense	c.1061	p.S354L	0.689	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428				144	0	0	66	19	22.3529
TMC4	0	genome.wustl.edu	37	19	54667579	54667579	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	54667579	54667579	C	A	SNP	TMC4	ENST00000301187	human	ensembl	74_37	-1	known	missense	c.1154	p.G385V	0.036	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608				130	0	0	49	55	52.8846
RDH13	0	genome.wustl.edu	37	19	55556595	55556595	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	55556595	55556595	C	T	SNP	RDH13	ENST00000415061	human	ensembl	74_37	-1	known	silent	c.843	p.A281	0.965	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH13	HGNC	ENSG00000160439				171	0	0	119	9	7.03125
EPS8L1	0	genome.wustl.edu	37	19	55592649	55592649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	55592649	55592649	C	T	SNP	EPS8L1	ENST00000201647	human	ensembl	74_37	+1	known	missense	c.563	p.P188L	0.993	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037				12	0	0	3	3	50
BRSK1	0	genome.wustl.edu	37	19	55812995	55812995	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	55812995	55812995	T	C	SNP	BRSK1	ENST00000590333	human	ensembl	74_37	+1	known	missense	c.842	p.M281T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	BRSK1	HGNC	ENSG00000160469				28	0	0	34	10	22.7273
TMEM190	0	genome.wustl.edu	37	19	55889366	55889366	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	55889366	55889366	T	C	SNP	TMEM190	ENST00000291934	human	ensembl	74_37	+1	known	missense	c.329	p.L110P	0.957	NULL	superfamily_P_trefoil	-	no_errors	TMEM190	HGNC	ENSG00000160472				70	0	0	61	6	8.95522
ISOC2	0	genome.wustl.edu	37	19	55966406	55966406	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	55966406	55966406	C	A	SNP	ISOC2	ENST00000085068	human	ensembl	74_37	-1	known	missense	c.535	p.G179W	0.996	superfamily_Isochorismatase-like	pfam_Isochorismatase-like,superfamily_Isochorismatase-like	-	no_errors	ISOC2	HGNC	ENSG00000063241				79	0	0	37	52	58.427
FIZ1	0	genome.wustl.edu	37	19	56103953	56103953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	56103953	56103953	G	A	SNP	FIZ1	ENST00000221665	human	ensembl	74_37	-1	known	missense	c.1354	p.R452C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FIZ1	HGNC	ENSG00000179943				23	0	0	23	5	17.8571
ZNF581	0	genome.wustl.edu	37	19	56156448	56156448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	56156448	56156448	C	T	SNP	ZNF581	ENST00000270451	human	ensembl	74_37	+1	known	missense	c.511	p.R171C	0.993	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF581	HGNC	ENSG00000171425				195	0	0	58	79	57.6642
NLRP9	0	genome.wustl.edu	37	19	56235376	56235376	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	56235376	56235376	T	C	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	missense	c.2129	p.K710R	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				130	0	0	96	24	20
ZNF71	0	genome.wustl.edu	37	19	57133862	57133862	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	57133862	57133862	G	A	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	missense	c.1207	p.V403M	0.069	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				124	0	0	54	88	61.9718
ZNF543	0	genome.wustl.edu	37	19	57838089	57838089	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	57838089	57838089	C	A	SNP	ZNF543	ENST00000321545	human	ensembl	74_37	+1	known	silent	c.234	p.S78	0.001	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229				45	0	0	27	57	67.8571
ZNF772	0	genome.wustl.edu	37	19	57984642	57984642	+	Nonstop_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	57984642	57984642	C	A	SNP	ZNF772	ENST00000343280	human	ensembl	74_37	-1	known	nonstop	c.1470	p.*490Y	0.014	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF772	HGNC	ENSG00000197128				53	0	0	55	10	15.3846
ZNF132	0	genome.wustl.edu	37	19	58945229	58945229	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	58945229	58945229	A	G	SNP	ZNF132	ENST00000254166	human	ensembl	74_37	-1	known	missense	c.1582	p.S528P	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF132	HGNC	ENSG00000131849				104	0	0	84	18	17.6471
MZF1	0	genome.wustl.edu	37	19	59073500	59073500	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	59073500	59073500	C	T	SNP	MZF1	ENST00000215057	human	ensembl	74_37	-1	known	missense	c.2144	p.G715D	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	MZF1	HGNC	ENSG00000099326				14	0	0	5	5	50
SLC25A41	0	genome.wustl.edu	37	19	6427487	6427487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	6427487	6427487	C	T	SNP	SLC25A41	ENST00000321510	human	ensembl	74_37	-1	known	missense	c.650	p.R217H	0.915	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A41	HGNC	ENSG00000181240				14	0	0	9	4	30.7692
ARHGEF18	0	genome.wustl.edu	37	19	7527040	7527040	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	7527040	7527040	C	T	SNP	ARHGEF18	ENST00000359920	human	ensembl	74_37	+1	known	missense	c.1891	p.R631W	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880				254	0	0	65	32	32.9897
MISP	0	genome.wustl.edu	37	19	761663	761663	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	761663	761663	G	T	SNP	MISP	ENST00000215582	human	ensembl	74_37	+1	known	missense	c.1950	p.E650D	1.000	NULL	NULL	-	no_errors	MISP	HGNC	ENSG00000099812				65	0	0	27	8	22.8571
XAB2	0	genome.wustl.edu	37	19	7692672	7692672	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	7692672	7692672	T	G	SNP	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	missense	c.266	p.D89A	1.000	NULL	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				213	1	0.46729	73	30	29.1262
ELAVL1	0	genome.wustl.edu	37	19	8046031	8046031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	8046031	8046031	G	A	SNP	ELAVL1	ENST00000351593	human	ensembl	74_37	-1	known	missense	c.293	p.A98V	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044				94	0	0	47	19	28.7879
PTBP1	0	genome.wustl.edu	37	19	807901	807901	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	807901	807901	C	T	SNP	PTBP1	ENST00000356948	human	ensembl	74_37	+1	known	silent	c.1152	p.F384	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP1	HGNC	ENSG00000011304				186	0	0	65	18	21.6867
FBN3	0	genome.wustl.edu	37	19	8171112	8171112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	8171112	8171112	C	T	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.4693	p.D1565N	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				59	0	0	23	9	28.125
ADAMTS10	0	genome.wustl.edu	37	19	8656952	8656952	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	8656952	8656952	C	T	SNP	ADAMTS10	ENST00000593826	human	ensembl	74_37	-1	known	missense	c.95	p.R32H	0.302	NULL	NULL	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				86	0	0	27	9	25
MUC16	0	genome.wustl.edu	37	19	9069345	9069345	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	9069345	9069345	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.18101	p.Q6034R	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				283	0	0	106	37	25.8741
OR7D4	0	genome.wustl.edu	37	19	9324906	9324906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	9324906	9324906	G	A	SNP	OR7D4	ENST00000308682	human	ensembl	74_37	-1	known	missense	c.608	p.T203M	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667				163	0	0	65	5	7.14286
WDR18	0	genome.wustl.edu	37	19	990308	990308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	990308	990308	G	A	SNP	WDR18	ENST00000251289	human	ensembl	74_37	+1	known	missense	c.541	p.G181S	0.999	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR18	HGNC	ENSG00000065268				30	0	0	22	6	21.4286
AFF3	0	genome.wustl.edu	37	2	100170848	100170848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	100170848	100170848	C	T	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	missense	c.3559	p.V1187I	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				209	0	0	45	32	41.5584
NPAS2	0	genome.wustl.edu	37	2	101607279	101607279	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	101607279	101607279	G	A	SNP	NPAS2	ENST00000542504	human	ensembl	74_37	+1	known	missense	c.2251	p.G751R	0.951	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485				80	0	0	21	10	32.2581
CD8BP	0	genome.wustl.edu	37	2	107107470	107107470	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	107107470	107107470	A	G	SNP	CD8BP	ENST00000416057	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CD8BP	HGNC	ENSG00000254126				86	0	0	32	19	37.2549
CD8BP	0	genome.wustl.edu	37	2	107107653	107107653	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	107107653	107107653	G	A	SNP	CD8BP	ENST00000416057	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD8BP	HGNC	ENSG00000254126				112	0	0	49	18	26.8657
ST6GAL2	0	genome.wustl.edu	37	2	107459775	107459775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	107459775	107459775	C	T	SNP	ST6GAL2	ENST00000361686	human	ensembl	74_37	-1	known	missense	c.659	p.R220H	1.000	NULL	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	-	no_errors	ST6GAL2	HGNC	ENSG00000144057				31	0	0	24	11	31.4286
SOWAHC	0	genome.wustl.edu	37	2	110373095	110373095	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	110373095	110373095	C	T	SNP	SOWAHC	ENST00000356454	human	ensembl	74_37	+1	known	silent	c.1029	p.T343	0.488	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHC	HGNC	ENSG00000198142				102	0	0	34	22	39.2857
ANAPC1	0	genome.wustl.edu	37	2	112620029	112620029	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	112620029	112620029	G	A	SNP	ANAPC1	ENST00000341068	human	ensembl	74_37	-1	known	missense	c.1199	p.T400M	0.779	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107				43	0	0	21	3	12.5
MERTK	0	genome.wustl.edu	37	2	112686911	112686911	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	112686911	112686911	G	A	SNP	MERTK	ENST00000295408	human	ensembl	74_37	+1	known	silent	c.276	p.P92	0.002	pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208				101	0	0	40	16	28.5714
POLR1B	0	genome.wustl.edu	37	2	113306901	113306901	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	113306901	113306901	A	G	SNP	POLR1B	ENST00000541869	human	ensembl	74_37	+1	known	missense	c.664	p.M222V	1.000	pfam_RNA_pol_bsu_protrusion	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630				98	0	0	28	17	37.7778
GREB1	0	genome.wustl.edu	37	2	11777871	11777871	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	11777871	11777871	G	A	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	silent	c.5376	p.P1792	0.002	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				96	0	0	29	10	25.641
INSIG2	0	genome.wustl.edu	37	2	118860856	118860856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	118860856	118860856	C	T	SNP	INSIG2	ENST00000245787	human	ensembl	74_37	+1	known	missense	c.328	p.R110W	1.000	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629				145	0	0	75	30	28.5714
LPIN1	0	genome.wustl.edu	37	2	11944581	11944581	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	11944581	11944581	C	T	SNP	LPIN1	ENST00000449576	human	ensembl	74_37	+1	known	silent	c.2193	p.D731	0.930	superfamily_WD40_repeat_dom	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,superfamily_WD40_repeat_dom,smart_LNS2	-	no_errors	LPIN1	HGNC	ENSG00000134324				103	0	0	38	21	35.5932
PCDP1	0	genome.wustl.edu	37	2	120366155	120366155	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	120366155	120366155	C	T	SNP	PCDP1	ENST00000413369	human	ensembl	74_37	+1	known	missense	c.1211	p.A404V	0.000	NULL	NULL	-	no_errors	PCDP1	Uniprot_gn	ENSG00000163075				271	0	0	87	39	30.9524
INHBB	0	genome.wustl.edu	37	2	121107211	121107211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	121107211	121107211	G	A	SNP	INHBB	ENST00000295228	human	ensembl	74_37	+1	known	missense	c.985	p.G329R	1.000	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaB,prints_Inhibin_asu	-	no_errors	INHBB	HGNC	ENSG00000163083				125	0	0	51	24	32
CLASP1	0	genome.wustl.edu	37	2	122144775	122144775	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	122144775	122144775	C	T	SNP	CLASP1	ENST00000263710	human	ensembl	74_37	-1	known	silent	c.3297	p.T1099	0.989	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054				22	0	0	22	5	18.5185
LIMS2	0	genome.wustl.edu	37	2	128396806	128396806	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	128396806	128396806	C	T	SNP	LIMS2	ENST00000494613	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LIMS2	HGNC	ENSG00000072163				64	0	0	48	20	29.4118
WDR33	0	genome.wustl.edu	37	2	128522235	128522235	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	128522235	128522235	A	G	SNP	WDR33	ENST00000409658	human	ensembl	74_37	-1	known	missense	c.793	p.W265R	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709				11	0	0	12	3	20
POTEI	0	genome.wustl.edu	37	2	131266695	131266695	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	131266695	131266695	G	A	SNP	POTEI	ENST00000451531	human	ensembl	74_37	-1	novel	silent	c.114	p.S38	0.152	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEI	HGNC	ENSG00000196834				107	0	0	45	12	21.0526
NCKAP5	0	genome.wustl.edu	37	2	133542088	133542088	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	133542088	133542088	G	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	nonsense	c.2296	p.Q766*	0.106	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				122	0	0	49	32	39.5062
MGAT5	0	genome.wustl.edu	37	2	135095925	135095925	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	135095925	135095925	C	T	SNP	MGAT5	ENST00000281923	human	ensembl	74_37	+1	known	silent	c.741	p.D247	0.996	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127				65	0	0	32	17	34.6939
RAB3GAP1	0	genome.wustl.edu	37	2	135870727	135870727	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	135870727	135870727	G	A	SNP	RAB3GAP1	ENST00000264158	human	ensembl	74_37	+1	known	silent	c.369	p.G123	0.452	NULL	NULL	-	no_errors	RAB3GAP1	HGNC	ENSG00000115839				197	0	0	53	25	32.0513
LCT	0	genome.wustl.edu	37	2	136567501	136567501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	136567501	136567501	C	T	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	missense	c.2416	p.E806K	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				138	0	0	51	27	34.6154
EPC2	0	genome.wustl.edu	37	2	149511608	149511608	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	149511608	149511608	T	C	SNP	EPC2	ENST00000258484	human	ensembl	74_37	+1	known	missense	c.572	p.I191T	1.000	NULL	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC2	HGNC	ENSG00000135999				34	0	0	8	6	42.8571
EPC2	0	genome.wustl.edu	37	2	149542480	149542480	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	149542480	149542480	C	T	SNP	EPC2	ENST00000258484	human	ensembl	74_37	+1	known	missense	c.2261	p.S754L	1.000	pfam_Enhancer_polycomb_C	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC2	HGNC	ENSG00000135999				47	0	0	24	12	33.3333
NEB	0	genome.wustl.edu	37	2	152500522	152500522	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	152500522	152500522	T	C	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.7766	p.Y2589C	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				723	0	0	347	25	6.72043
WDSUB1	0	genome.wustl.edu	37	2	160104952	160104952	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	160104952	160104952	A	G	SNP	WDSUB1	ENST00000359774	human	ensembl	74_37	-1	known	missense	c.1204	p.S402P	1.000	superfamily_SAM/pointed	pfam_WD40_repeat,pfam_Ubox_domain,pfam_SAM_2,pfam_SAM_type1,pfam_Pointed_dom,superfamily_WD40_repeat_dom,superfamily_SAM/pointed,smart_WD40_repeat,smart_SAM,smart_Ubox_domain,pfscan_SAM,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDSUB1	HGNC	ENSG00000196151				97	0	0	43	18	29.5082
ITGB6	0	genome.wustl.edu	37	2	161052047	161052047	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	161052047	161052047	G	A	SNP	ITGB6	ENST00000283249	human	ensembl	74_37	-1	known	silent	c.426	p.S142	0.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221				123	0	0	66	5	7.04225
SCN3A	0	genome.wustl.edu	37	2	165972001	165972001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	165972001	165972001	C	T	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	missense	c.3478	p.E1160K	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				87	0	0	35	22	38.5965
SCN2A	0	genome.wustl.edu	37	2	166237172	166237172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	166237172	166237172	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.4379	p.G1460D	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				59	0	0	36	18	33.3333
TTC21B	0	genome.wustl.edu	37	2	166755270	166755270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	166755270	166755270	G	A	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	missense	c.2876	p.A959V	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				61	0	0	31	14	31.1111
TTC21B	0	genome.wustl.edu	37	2	166756333	166756333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	166756333	166756333	G	A	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	missense	c.2815	p.R939W	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				116	0	0	31	16	34.0426
XIRP2	0	genome.wustl.edu	37	2	168107104	168107104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	168107104	168107104	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.9202	p.E3068K	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				150	0	0	49	19	27.9412
XIRP2	0	genome.wustl.edu	37	2	168107330	168107330	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	168107330	168107330	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.9428	p.Q3143R	0.356	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				195	0	0	67	27	28.7234
MYO3B	0	genome.wustl.edu	37	2	171399449	171399449	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	171399449	171399449	C	T	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	silent	c.3636	p.C1212	0.018	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				180	1	0.552486	44	27	38.0282
EVX2	0	genome.wustl.edu	37	2	176948462	176948462	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	176948462	176948462	C	A	SNP	EVX2	ENST00000308618	human	ensembl	74_37	-1	known	missense	c.43	p.G15W	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1,prints_Homeobox_metazoa	-	no_errors	EVX2	HGNC	ENSG00000174279				158	0	0	54	23	29.8701
TTN	0	genome.wustl.edu	37	2	179396160	179396160	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	179396160	179396160	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.97478	p.A32493V	0.608	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				126	0	0	63	30	32.2581
TTN	0	genome.wustl.edu	37	2	179401713	179401713	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	179401713	179401713	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.92419	p.S30807G	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				42	0	0	13	7	35
TTN	0	genome.wustl.edu	37	2	179402412	179402412	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	179402412	179402412	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.91818	p.I30606M	0.772	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				65	0	0	19	17	47.2222
TTN	0	genome.wustl.edu	37	2	179443562	179443562	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	179443562	179443562	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.60491	p.S20164L	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				154	0	0	45	24	34.7826
TTN	0	genome.wustl.edu	37	2	179477175	179477175	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	179477175	179477175	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.42373	p.V14125I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				43	0	0	23	8	25.8065
TTN	0	genome.wustl.edu	37	2	179544075	179544075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	179544075	179544075	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.30001	p.P10001S	1.000	pfam_PPAK_motif,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				86	0	0	28	13	31.7073
NT5C1B	0	genome.wustl.edu	37	2	18765871	18765871	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	18765871	18765871	T	C	SNP	NT5C1B	ENST00000359846	human	ensembl	74_37	-1	known	missense	c.812	p.Q271R	0.004	NULL	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013				27	0	0	10	5	33.3333
GULP1	0	genome.wustl.edu	37	2	189449083	189449083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	189449083	189449083	G	A	SNP	GULP1	ENST00000359135	human	ensembl	74_37	+1	known	missense	c.701	p.R234H	0.998	NULL	pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	GULP1	HGNC	ENSG00000144366				152	0	0	71	25	26.0417
SDPR	0	genome.wustl.edu	37	2	192711451	192711451	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	192711451	192711451	G	A	SNP	SDPR	ENST00000304141	human	ensembl	74_37	-1	known	silent	c.201	p.N67	1.000	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497				74	0	0	39	28	41.791
DNAH7	0	genome.wustl.edu	37	2	196602773	196602773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	196602773	196602773	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.11947	p.R3983W	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				67	0	0	24	8	25
SPATS2L	0	genome.wustl.edu	37	2	201342603	201342603	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	201342603	201342603	G	T	SNP	SPATS2L	ENST00000409755	human	ensembl	74_37	+1	known	missense	c.1616	p.R539L	1.000	NULL	pfam_DUF1387,superfamily_UBA-like	-	no_errors	SPATS2L	HGNC	ENSG00000196141				25	0	0	12	5	29.4118
FAM126B	0	genome.wustl.edu	37	2	201857061	201857061	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	201857061	201857061	T	G	SNP	FAM126B	ENST00000418596	human	ensembl	74_37	-1	known	missense	c.774	p.E258D	1.000	pfam_Hyccin	pfam_Hyccin	-	no_errors	FAM126B	HGNC	ENSG00000155744				155	0	0	56	30	34.8837
BMPR2	0	genome.wustl.edu	37	2	203379644	203379644	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	203379644	203379644	T	C	SNP	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	missense	c.563	p.M188T	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				62	0	0	43	22	33.8462
ICOS	0	genome.wustl.edu	37	2	204820440	204820440	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	204820440	204820440	T	C	SNP	ICOS	ENST00000316386	human	ensembl	74_37	+1	known	missense	c.140	p.I47T	0.000	NULL	NULL	-	no_errors	ICOS	HGNC	ENSG00000163600				141	0	0	61	30	32.967
KLF7	0	genome.wustl.edu	37	2	207988869	207988869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	207988869	207988869	C	T	SNP	KLF7	ENST00000309446	human	ensembl	74_37	-1	known	missense	c.362	p.S121N	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF7	HGNC	ENSG00000118263				68	0	0	34	10	22.7273
GDF7	0	genome.wustl.edu	37	2	20870956	20870956	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	20870956	20870956	C	T	SNP	GDF7	ENST00000272224	human	ensembl	74_37	+1	known	missense	c.1124	p.A375V	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF7	HGNC	ENSG00000143869				64	0	0	11	9	45
KANSL1L	0	genome.wustl.edu	37	2	210887719	210887719	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	210887719	210887719	T	A	SNP	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	missense	c.2918	p.Y973F	0.004	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				73	0	0	40	14	25.9259
APOB	0	genome.wustl.edu	37	2	21228488	21228488	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	21228488	21228488	A	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.11252	p.V3751A	0.998	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				257	0	0	109	54	33.1288
FN1	0	genome.wustl.edu	37	2	216245649	216245649	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	216245649	216245649	A	G	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	silent	c.5319	p.G1773	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				170	0	0	78	31	28.4404
WNT6	0	genome.wustl.edu	37	2	219736388	219736388	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	219736388	219736388	G	A	SNP	WNT6	ENST00000233948	human	ensembl	74_37	+1	known	silent	c.483	p.P161	0.000	pfam_Wnt,smart_Wnt,prints_Wnt6	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt6	-	no_errors	WNT6	HGNC	ENSG00000115596				26	0	0	7	3	30
CCDC108	0	genome.wustl.edu	37	2	219878239	219878239	+	Splice_Site	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	219878239	219878239	A	G	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	splice_site	c.3846+2	e21+2	1.000	-	-	-	no_errors	CCDC108	HGNC	ENSG00000181378				20	0	0	5	4	44.4444
ASIC4	0	genome.wustl.edu	37	2	220379756	220379756	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	220379756	220379756	G	A	SNP	ASIC4	ENST00000347842	human	ensembl	74_37	+1	known	missense	c.691	p.A231T	0.978	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC4	HGNC	ENSG00000072182				61	0	0	37	6	13.9535
STK11IP	0	genome.wustl.edu	37	2	220471013	220471013	+	Splice_Site	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	220471013	220471013	G	A	SNP	STK11IP	ENST00000456909	human	ensembl	74_37	+1	novel	splice_site	c.945+1	e9+1	0.995	-	-	-	no_errors	STK11IP	HGNC	ENSG00000144589				9	0	0	3	3	50
SLC4A3	0	genome.wustl.edu	37	2	220505562	220505562	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	220505562	220505562	G	A	SNP	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	missense	c.3580	p.A1194T	0.940	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				67	0	0	24	14	36.8421
FAM124B	0	genome.wustl.edu	37	2	225266244	225266244	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	225266244	225266244	C	A	SNP	FAM124B	ENST00000409685	human	ensembl	74_37	-1	known	missense	c.242	p.R81M	0.999	NULL	NULL	-	no_errors	FAM124B	HGNC	ENSG00000124019				79	0	0	41	15	26.7857
CUL3	0	genome.wustl.edu	37	2	225378351	225378351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	225378351	225378351	C	T	SNP	CUL3	ENST00000264414	human	ensembl	74_37	-1	known	missense	c.544	p.A182T	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257				77	0	0	26	11	29.7297
TRIP12	0	genome.wustl.edu	37	2	230655844	230655844	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	230655844	230655844	C	T	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	nonsense	c.4314	p.W1438*	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				156	0	0	51	23	31.0811
TRPM8	0	genome.wustl.edu	37	2	234835263	234835263	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	234835263	234835263	C	T	SNP	TRPM8	ENST00000324695	human	ensembl	74_37	+1	known	silent	c.81	p.S27	0.021	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481				48	0	0	44	8	15.3846
SH3BP4	0	genome.wustl.edu	37	2	235951125	235951125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	235951125	235951125	G	A	SNP	SH3BP4	ENST00000344528	human	ensembl	74_37	+1	known	missense	c.1712	p.R571H	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147				146	1	0.680272	60	4	6.25
AGAP1	0	genome.wustl.edu	37	2	237029036	237029036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	237029036	237029036	C	T	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.2315	p.A772V	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				178	0	0	35	17	32.6923
COL6A3	0	genome.wustl.edu	37	2	238277416	238277416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	238277416	238277416	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.4690	p.R1564C	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				182	0	0	88	34	27.8689
ESPNL	0	genome.wustl.edu	37	2	239039951	239039951	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	239039951	239039951	C	T	SNP	ESPNL	ENST00000343063	human	ensembl	74_37	+1	known	silent	c.2596	p.L866	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ESPNL	HGNC	ENSG00000144488				13	0	0	5	4	44.4444
ILKAP	0	genome.wustl.edu	37	2	239082212	239082212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	239082212	239082212	G	A	SNP	ILKAP	ENST00000254654	human	ensembl	74_37	-1	known	missense	c.919	p.P307S	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	ILKAP	HGNC	ENSG00000132323				83	0	0	28	19	40.4255
PER2	0	genome.wustl.edu	37	2	239162216	239162216	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	239162216	239162216	G	A	SNP	PER2	ENST00000254657	human	ensembl	74_37	-1	known	silent	c.2448	p.P816	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326				25	0	0	11	7	38.8889
RNPEPL1	0	genome.wustl.edu	37	2	241516125	241516125	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	241516125	241516125	A	G	SNP	RNPEPL1	ENST00000270357	human	ensembl	74_37	+1	known	missense	c.991	p.T331A	1.000	pfam_Peptidase_M1_C,superfamily_ARM-type_fold	pfam_Peptidase_M1_C,pfam_Peptidase_M1_N,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEPL1	HGNC	ENSG00000142327				131	1	0.757576	47	8	14.5455
CAPN10	0	genome.wustl.edu	37	2	241536099	241536099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	241536099	241536099	G	A	SNP	CAPN10	ENST00000391984	human	ensembl	74_37	+1	known	missense	c.1483	p.A495T	0.884	superfamily_Calpain_domain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN10	HGNC	ENSG00000142330				71	0	0	36	4	10
ANO7	0	genome.wustl.edu	37	2	242128129	242128129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	242128129	242128129	G	A	SNP	ANO7	ENST00000274979	human	ensembl	74_37	+1	known	missense	c.103	p.A35T	0.000	NULL	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205				56	0	0	29	6	17.1429
HDLBP	0	genome.wustl.edu	37	2	242179175	242179175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	242179175	242179175	G	A	SNP	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	missense	c.2452	p.R818C	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				91	0	0	54	15	21.7391
GAL3ST2	0	genome.wustl.edu	37	2	242741376	242741376	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	242741376	242741376	G	A	SNP	GAL3ST2	ENST00000192314	human	ensembl	74_37	+1	known	silent	c.300	p.A100	0.000	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST2	HGNC	ENSG00000154252				63	0	0	31	8	20.5128
SLC5A6	0	genome.wustl.edu	37	2	27430333	27430333	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	27430333	27430333	C	T	SNP	SLC5A6	ENST00000310574	human	ensembl	74_37	-1	known	silent	c.186	p.A62	0.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074				66	0	0	29	19	39.5833
PLB1	0	genome.wustl.edu	37	2	28855889	28855889	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	28855889	28855889	G	A	SNP	PLB1	ENST00000422425	human	ensembl	74_37	+1	known	missense	c.4048	p.A1350T	0.711	pfam_Lipase_GDSL	pfam_Lipase_GDSL	-	no_errors	PLB1	HGNC	ENSG00000163803				91	0	0	33	22	40
BIRC6	0	genome.wustl.edu	37	2	32695244	32695244	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	32695244	32695244	T	C	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.6356	p.M2119T	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				13	0	0	5	2	28.5714
LTBP1	0	genome.wustl.edu	37	2	33359851	33359851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	33359851	33359851	C	T	SNP	LTBP1	ENST00000390003	human	ensembl	74_37	+1	known	missense	c.47	p.P16L	0.945	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				141	0	0	48	17	26.1538
SIX2	0	genome.wustl.edu	37	2	45236072	45236072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	45236072	45236072	G	A	SNP	SIX2	ENST00000303077	human	ensembl	74_37	-1	known	missense	c.178	p.R60C	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX2	HGNC	ENSG00000170577				146	0	0	46	9	16.3636
PRKCE	0	genome.wustl.edu	37	2	46203633	46203633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	46203633	46203633	G	A	SNP	PRKCE	ENST00000306156	human	ensembl	74_37	+1	known	missense	c.478	p.V160I	1.000	pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132				144	0	0	48	22	31.4286
PPP1R21	0	genome.wustl.edu	37	2	48722901	48722901	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	48722901	48722901	T	C	SNP	PPP1R21	ENST00000294952	human	ensembl	74_37	+1	known	silent	c.1683	p.L561	0.972	pfam_KLRAQ/TTKRSYEDQ_C	pfam_KLRAQ/TTKRSYEDQ_C,pfam_Unchr_KLRAQ/TTKRSYEDQ_N,superfamily_Ferritin-like_SF	-	no_errors	PPP1R21	HGNC	ENSG00000162869				96	0	0	32	13	28.8889
NRXN1	0	genome.wustl.edu	37	2	50280724	50280724	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	50280724	50280724	A	G	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.3789	p.R1263	0.999	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				86	0	0	41	15	26.7857
NRXN1	0	genome.wustl.edu	37	2	51255184	51255184	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	51255184	51255184	G	A	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.228	p.C76	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				29	0	0	10	11	52.381
SPTBN1	0	genome.wustl.edu	37	2	54876770	54876770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	54876770	54876770	C	T	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	missense	c.5221	p.R1741W	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				43	0	0	31	11	26.1905
SOX11	0	genome.wustl.edu	37	2	5833132	5833132	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	5833132	5833132	C	T	SNP	SOX11	ENST00000322002	human	ensembl	74_37	+1	known	silent	c.279	p.S93	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	-	no_errors	SOX11	HGNC	ENSG00000176887				55	0	0	21	6	22.2222
REL	0	genome.wustl.edu	37	2	61148969	61148969	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	61148969	61148969	T	C	SNP	REL	ENST00000295025	human	ensembl	74_37	+1	known	missense	c.1159	p.Y387H	0.921	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NF_Rel_Dor	-	no_errors	REL	HGNC	ENSG00000162924				187	0	0	57	23	28.75
USP34	0	genome.wustl.edu	37	2	61575065	61575065	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	61575065	61575065	C	T	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.2225	p.R742Q	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				167	0	0	67	44	39.6396
XPO1	0	genome.wustl.edu	37	2	61711237	61711237	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	61711237	61711237	A	C	SNP	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	missense	c.2512	p.F838V	1.000	pfam_CRM1_C_dom,superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898				115	0	0	46	6	11.5385
AFTPH	0	genome.wustl.edu	37	2	64779393	64779393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	64779393	64779393	G	A	SNP	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	missense	c.785	p.R262Q	1.000	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				134	0	0	50	30	37.5
CEP68	0	genome.wustl.edu	37	2	65298713	65298713	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	65298713	65298713	C	A	SNP	CEP68	ENST00000377990	human	ensembl	74_37	+1	known	silent	c.483	p.P161	0.000	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523				90	0	0	49	10	16.9492
ADD2	0	genome.wustl.edu	37	2	70890788	70890788	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	70890788	70890788	G	A	SNP	ADD2	ENST00000264436	human	ensembl	74_37	-1	known	silent	c.1950	p.N650	0.874	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340				136	0	0	42	30	41.6667
DYSF	0	genome.wustl.edu	37	2	71825778	71825778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	71825778	71825778	C	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.3698	p.T1233M	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				86	0	0	27	12	30.7692
DYSF	0	genome.wustl.edu	37	2	71908139	71908139	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	71908139	71908139	G	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	silent	c.6048	p.L2016	1.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				57	0	0	12	11	47.8261
FBXO41	0	genome.wustl.edu	37	2	73491114	73491114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	73491114	73491114	C	T	SNP	FBXO41	ENST00000295133	human	ensembl	74_37	-1	known	missense	c.2057	p.R686Q	1.000	superfamily_F-box_dom	superfamily_F-box_dom	-	no_errors	FBXO41	HGNC	ENSG00000163013				30	0	0	5	4	44.4444
ALMS1	0	genome.wustl.edu	37	2	73677596	73677596	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	73677596	73677596	A	G	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	silent	c.3939	p.S1313	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				299	0	0	145	74	33.79
TACR1	0	genome.wustl.edu	37	2	75347720	75347720	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	75347720	75347720	C	T	SNP	TACR1	ENST00000305249	human	ensembl	74_37	-1	known	silent	c.564	p.P188	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_NK1_rcpt,prints_NK3_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_NK1_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK3_rcpt	-	no_errors	TACR1	HGNC	ENSG00000115353				108	0	0	57	20	25.974
TGOLN2	0	genome.wustl.edu	37	2	85554669	85554669	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	85554669	85554669	A	G	SNP	TGOLN2	ENST00000377386	human	ensembl	74_37	-1	known	silent	c.186	p.T62	0.000	NULL	NULL	-	no_errors	TGOLN2	HGNC	ENSG00000152291				289	0	0	155	72	31.7181
POLR1A	0	genome.wustl.edu	37	2	86258589	86258589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	86258589	86258589	G	A	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	missense	c.4442	p.T1481M	0.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				214	0	0	79	23	22.549
POLR1A	0	genome.wustl.edu	37	2	86327260	86327260	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	86327260	86327260	T	C	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	missense	c.113	p.Y38C	0.650	pfam_RNA_pol_Rpb1_1	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				76	0	0	26	13	33.3333
GPAT2	0	genome.wustl.edu	37	2	96691753	96691753	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	96691753	96691753	A	G	SNP	GPAT2	ENST00000359548	human	ensembl	74_37	-1	known	missense	c.1163	p.I388T	0.002	NULL	smart_Plipid/glycerol_acylTrfase	-	no_errors	GPAT2	HGNC	ENSG00000186281				42	0	0	22	4	15.3846
ARID5A	0	genome.wustl.edu	37	2	97217956	97217956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	97217956	97217956	G	A	SNP	ARID5A	ENST00000357485	human	ensembl	74_37	+1	known	missense	c.1691	p.R564H	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5A	HGNC	ENSG00000196843				218	0	0	89	30	25.2101
SEMA4C	0	genome.wustl.edu	37	2	97530066	97530066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	97530066	97530066	C	T	SNP	SEMA4C	ENST00000305476	human	ensembl	74_37	-1	known	missense	c.1016	p.R339Q	0.995	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4C	HGNC	ENSG00000168758				230	0	0	63	32	33.6842
ZAP70	0	genome.wustl.edu	37	2	98340512	98340512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	98340512	98340512	G	A	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	missense	c.13	p.A5T	1.000	pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				12	0	0	1	2	66.6667
VWA3B	0	genome.wustl.edu	37	2	98737906	98737906	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	98737906	98737906	C	T	SNP	VWA3B	ENST00000477737	human	ensembl	74_37	+1	known	silent	c.687	p.A229	0.006	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658				136	0	0	50	21	29.5775
INPP4A	0	genome.wustl.edu	37	2	99155399	99155399	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	99155399	99155399	C	T	SNP	INPP4A	ENST00000074304	human	ensembl	74_37	+1	known	nonsense	c.625	p.R209*	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4A	HGNC	ENSG00000040933				21	0	0	3	5	62.5
JAG1	0	genome.wustl.edu	37	20	10653395	10653395	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	10653395	10653395	C	T	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	missense	c.341	p.G114D	1.000	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384				105	0	0	55	8	12.6984
NSFL1C	0	genome.wustl.edu	37	20	1424325	1424325	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	1424325	1424325	C	T	SNP	NSFL1C	ENST00000461211	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NSFL1C	HGNC	ENSG00000088833				24	0	0	13	5	27.7778
MACROD2	0	genome.wustl.edu	37	20	14665540	14665540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	14665540	14665540	G	A	SNP	MACROD2	ENST00000310348	human	ensembl	74_37	+1	known	missense	c.353	p.R118H	0.983	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	-	no_errors	MACROD2	HGNC	ENSG00000172264				222	0	0	64	27	29.6703
KIF16B	0	genome.wustl.edu	37	20	16488710	16488710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	16488710	16488710	C	T	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	missense	c.592	p.V198I	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				333	0	0	111	32	22.3776
BFSP1	0	genome.wustl.edu	37	20	17479597	17479597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	17479597	17479597	C	T	SNP	BFSP1	ENST00000377873	human	ensembl	74_37	-1	known	missense	c.824	p.R275H	1.000	superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin	-	no_errors	BFSP1	HGNC	ENSG00000125864				109	0	0	54	20	27.027
SNORD17	0	genome.wustl.edu	37	20	17943463	17943463	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	17943463	17943463	T	C	SNP	SNORD17	ENST00000390930	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.936	-	-	-	no_errors	SNORD17	HGNC	ENSG00000212232				105	0	0	38	23	37.7049
SEC23B	0	genome.wustl.edu	37	20	18523027	18523027	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	18523027	18523027	G	A	SNP	SEC23B	ENST00000262544	human	ensembl	74_37	+1	known	missense	c.1492	p.V498M	1.000	pfam_Sec23_24_beta_S	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23B	HGNC	ENSG00000101310				222	0	0	89	55	38.1944
SIRPA	0	genome.wustl.edu	37	20	1918079	1918079	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	1918079	1918079	G	A	SNP	SIRPA	ENST00000400068	human	ensembl	74_37	+1	known	silent	c.1392	p.P464	0.000	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPA	HGNC	ENSG00000198053				154	0	0	44	26	37.1429
ACSS1	0	genome.wustl.edu	37	20	25038592	25038592	+	Silent	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	25038592	25038592	T	A	SNP	ACSS1	ENST00000323482	human	ensembl	74_37	-1	known	silent	c.147	p.A49	0.000	NULL	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930				14	0	0	11	7	38.8889
VPS16	0	genome.wustl.edu	37	20	2843946	2843946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	2843946	2843946	C	T	SNP	VPS16	ENST00000380445	human	ensembl	74_37	+1	known	missense	c.1378	p.R460W	1.000	pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305				128	0	0	41	15	26.7857
REM1	0	genome.wustl.edu	37	20	30070226	30070226	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	30070226	30070226	A	G	SNP	REM1	ENST00000201979	human	ensembl	74_37	+1	known	missense	c.560	p.H187R	1.000	pirsf_Small_GTPase_GEM/REM/Rad,pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pirsf_Small_GTPase_GEM/REM/Rad,pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	REM1	HGNC	ENSG00000088320				86	0	0	31	15	32.6087
CCM2L	0	genome.wustl.edu	37	20	30602874	30602874	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	30602874	30602874	G	T	SNP	CCM2L	ENST00000300415	human	ensembl	74_37	+1	known	missense	c.198	p.K66N	1.000	NULL	NULL	-	no_errors	CCM2L	HGNC	ENSG00000101331				132	0	0	56	22	28.2051
SLC4A11	0	genome.wustl.edu	37	20	3215452	3215452	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	3215452	3215452	G	A	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	silent	c.306	p.I102	0.799	NULL	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				85	0	0	45	13	22.4138
C20orf194	0	genome.wustl.edu	37	20	3276890	3276890	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	3276890	3276890	G	A	SNP	C20orf194	ENST00000498079	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C20orf194	HGNC	ENSG00000088854				20	0	0	9	11	55
NRSN2	0	genome.wustl.edu	37	20	334250	334250	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	334250	334250	C	T	SNP	NRSN2	ENST00000382285	human	ensembl	74_37	+1	known	nonsense	c.586	p.Q196*	1.000	NULL	NULL	-	no_errors	NRSN2	HGNC	ENSG00000125841				146	0	0	49	24	32.8767
C20orf194	0	genome.wustl.edu	37	20	3354734	3354734	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	3354734	3354734	C	A	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	missense	c.573	p.E191D	0.998	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				116	0	0	44	19	30.1587
SPAG4	0	genome.wustl.edu	37	20	34205465	34205465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	34205465	34205465	G	A	SNP	SPAG4	ENST00000374273	human	ensembl	74_37	+1	known	missense	c.433	p.V145M	1.000	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SPAG4	HGNC	ENSG00000061656				13	0	0	8	7	46.6667
PHF20	0	genome.wustl.edu	37	20	34505541	34505541	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	34505541	34505541	G	A	SNP	PHF20	ENST00000374012	human	ensembl	74_37	+1	known	missense	c.1961	p.R654H	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_C2H2	-	no_errors	PHF20	HGNC	ENSG00000025293				56	0	0	24	11	31.4286
RBL1	0	genome.wustl.edu	37	20	35635937	35635937	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	35635937	35635937	A	G	SNP	RBL1	ENST00000373664	human	ensembl	74_37	-1	known	silent	c.2748	p.P916	0.995	pfam_RB_B,superfamily_Cyclin-like	pfam_RB_A,pfam_RB_B,pfam_RB_N,pfam_RB_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839				63	0	0	27	19	41.3043
RPRD1B	0	genome.wustl.edu	37	20	36718282	36718282	+	RNA	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	36718282	36718282	G	T	SNP	RPRD1B	ENST00000471511	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPRD1B	HGNC	ENSG00000101413				147	0	0	48	20	29.4118
HSPA12B	0	genome.wustl.edu	37	20	3719363	3719363	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	3719363	3719363	C	T	SNP	HSPA12B	ENST00000254963	human	ensembl	74_37	+1	known	silent	c.42	p.I14	0.143	NULL	NULL	-	no_errors	HSPA12B	HGNC	ENSG00000132622				90	0	0	33	13	28.2609
MAFB	0	genome.wustl.edu	37	20	39316588	39316588	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	39316588	39316588	G	A	SNP	MAFB	ENST00000373313	human	ensembl	74_37	-1	known	silent	c.903	p.L301	1.000	pfam_bZIP_Maf,pfscan_bZIP	pfam_bZIP_Maf,pfam_Maf_TF_N,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	MAFB	HGNC	ENSG00000204103				159	1	0.625	45	23	33.8235
IFT52	0	genome.wustl.edu	37	20	42264653	42264653	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	42264653	42264653	G	A	SNP	IFT52	ENST00000373030	human	ensembl	74_37	+1	known	silent	c.1011	p.A337	0.995	NULL	pfam_ABC_transp_unknown	-	no_errors	IFT52	HGNC	ENSG00000101052				68	0	0	19	7	26.9231
ELMO2	0	genome.wustl.edu	37	20	45000493	45000493	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	45000493	45000493	C	T	SNP	ELMO2	ENST00000439931	human	ensembl	74_37	-1	known	missense	c.1568	p.R523H	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598				115	0	0	55	7	11.2903
FAM65C	0	genome.wustl.edu	37	20	49218795	49218795	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	49218795	49218795	G	A	SNP	FAM65C	ENST00000535356	human	ensembl	74_37	-1	known	silent	c.1473	p.S491	0.000	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062				56	0	0	23	8	25.8065
KCNG1	0	genome.wustl.edu	37	20	49626482	49626482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	49626482	49626482	G	A	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	missense	c.394	p.R132C	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				75	0	0	32	21	39.6226
ZFP64	0	genome.wustl.edu	37	20	50701514	50701514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	50701514	50701514	G	A	SNP	ZFP64	ENST00000361387	human	ensembl	74_37	-1	known	missense	c.1520	p.A507V	0.738	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				113	1	0.877193	54	7	11.4754
PROKR2	0	genome.wustl.edu	37	20	5282772	5282772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	5282772	5282772	G	A	SNP	PROKR2	ENST00000217270	human	ensembl	74_37	-1	known	missense	c.1069	p.R357W	0.002	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR2	HGNC	ENSG00000101292				106	0	0	45	20	30.7692
CASS4	0	genome.wustl.edu	37	20	55012586	55012586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	55012586	55012586	G	A	SNP	CASS4	ENST00000360314	human	ensembl	74_37	+1	known	missense	c.403	p.D135N	0.645	NULL	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589				209	0	0	82	41	33.3333
RAE1	0	genome.wustl.edu	37	20	55948793	55948793	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	55948793	55948793	C	T	SNP	RAE1	ENST00000371242	human	ensembl	74_37	+1	known	missense	c.824	p.A275V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RAE1	HGNC	ENSG00000101146				274	1	0.363636	141	9	6
CTCFL	0	genome.wustl.edu	37	20	56099047	56099047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	56099047	56099047	G	A	SNP	CTCFL	ENST00000423479	human	ensembl	74_37	-1	known	missense	c.215	p.S72L	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCFL	HGNC	ENSG00000124092				210	0	0	109	53	32.716
PCK1	0	genome.wustl.edu	37	20	56138664	56138664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	56138664	56138664	C	T	SNP	PCK1	ENST00000319441	human	ensembl	74_37	+1	known	missense	c.842	p.A281V	0.991	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK1	HGNC	ENSG00000124253				97	0	0	48	15	23.8095
ZNF831	0	genome.wustl.edu	37	20	57766302	57766302	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	57766302	57766302	G	A	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	silent	c.228	p.P76	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				16	0	0	15	10	40
MCM8	0	genome.wustl.edu	37	20	5948171	5948171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	5948171	5948171	G	A	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	missense	c.965	p.S322N	1.000	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				137	1	0.724638	44	43	49.4253
OGFR	0	genome.wustl.edu	37	20	61444236	61444236	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	61444236	61444236	C	T	SNP	OGFR	ENST00000290291	human	ensembl	74_37	+1	known	silent	c.1269	p.S423	0.000	NULL	pfam_OGF_rcpt,pfam_OGF_rcpt_rpt	-	no_errors	OGFR	HGNC	ENSG00000060491				82	0	0	24	8	25
BHLHE23	0	genome.wustl.edu	37	20	61637536	61637536	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	61637536	61637536	C	T	SNP	BHLHE23	ENST00000370346	human	ensembl	74_37	-1	known	silent	c.543	p.A181	1.000	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE23	HGNC	ENSG00000125533				13	0	0	5	3	37.5
HELZ2	0	genome.wustl.edu	37	20	62195762	62195762	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	62195762	62195762	G	A	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	silent	c.4413	p.A1471	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				8	0	0	1	2	66.6667
RTEL1	0	genome.wustl.edu	37	20	62326158	62326158	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	62326158	62326158	C	T	SNP	RTEL1	ENST00000318100	human	ensembl	74_37	+1	known	silent	c.3174	p.H1058	0.000	NULL	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366				67	0	0	15	12	44.4444
ZGPAT	0	genome.wustl.edu	37	20	62366334	62366334	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	62366334	62366334	G	A	SNP	ZGPAT	ENST00000478385	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ZGPAT	HGNC	ENSG00000197114				14	0	0	5	5	50
PCMTD2	0	genome.wustl.edu	37	20	62904614	62904614	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	62904614	62904614	C	T	SNP	PCMTD2	ENST00000308824	human	ensembl	74_37	+1	known	silent	c.747	p.I249	0.916	NULL	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880				121	0	0	41	24	36.9231
SLC52A3	0	genome.wustl.edu	37	20	746209	746209	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	746209	746209	G	A	SNP	SLC52A3	ENST00000217254	human	ensembl	74_37	-1	known	silent	c.210	p.S70	0.000	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A3	HGNC	ENSG00000101276				11	0	0	4	6	60
TMPRSS15	0	genome.wustl.edu	37	21	19713805	19713805	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	19713805	19713805	G	T	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	missense	c.1489	p.L497I	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				136	0	0	52	23	30.6667
NCAM2	0	genome.wustl.edu	37	21	22804468	22804468	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	22804468	22804468	G	A	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	silent	c.1521	p.L507	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				87	0	0	29	16	35.5556
NCAM2	0	genome.wustl.edu	37	21	22804561	22804561	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	22804561	22804561	G	A	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	silent	c.1614	p.A538	0.538	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				74	0	0	35	7	16.6667
ADAMTS5	0	genome.wustl.edu	37	21	28296840	28296840	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	28296840	28296840	T	C	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	silent	c.2325	p.L775	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				223	0	0	109	43	28.2895
ADAMTS5	0	genome.wustl.edu	37	21	28327159	28327159	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	28327159	28327159	A	G	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	missense	c.1136	p.L379P	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				62	0	0	20	6	23.0769
ADAMTS5	0	genome.wustl.edu	37	21	28338050	28338050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	28338050	28338050	G	A	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	missense	c.661	p.H221Y	0.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				23	0	0	3	3	50
LTN1	0	genome.wustl.edu	37	21	30302779	30302779	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	30302779	30302779	C	T	SNP	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	silent	c.5430	p.T1810	0.992	NULL	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				111	0	0	43	21	32.8125
CLDN17	0	genome.wustl.edu	37	21	31538698	31538698	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	31538698	31538698	C	A	SNP	CLDN17	ENST00000286808	human	ensembl	74_37	-1	known	missense	c.238	p.A80S	0.944	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin14,prints_Claudin8	-	no_errors	CLDN17	HGNC	ENSG00000156282				111	0	0	37	24	39.3443
SCAF4	0	genome.wustl.edu	37	21	33068880	33068880	+	Splice_Site	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	33068880	33068880	A	G	SNP	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	splice_site	c.959+2	e8+2	0.952	-	-	-	no_errors	SCAF4	HGNC	ENSG00000156304				49	0	0	30	3	9.09091
OLIG1	0	genome.wustl.edu	37	21	34442872	34442872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	34442872	34442872	G	A	SNP	OLIG1	ENST00000382348	human	ensembl	74_37	+1	known	missense	c.320	p.R107Q	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	OLIG1	HGNC	ENSG00000184221				12	0	0	3	3	50
DSCR10	0	genome.wustl.edu	37	21	39580515	39580515	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	39580515	39580515	A	G	SNP	DSCR10	ENST00000432141	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DSCR10	HGNC	ENSG00000233316				496	0	0	179	65	26.6393
PDE9A	0	genome.wustl.edu	37	21	44182195	44182195	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	44182195	44182195	A	G	SNP	PDE9A	ENST00000291539	human	ensembl	74_37	+1	known	missense	c.1088	p.Y363C	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE9A	HGNC	ENSG00000160191				41	0	0	17	10	37.037
PKNOX1	0	genome.wustl.edu	37	21	44438315	44438315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	44438315	44438315	G	A	SNP	PKNOX1	ENST00000291547	human	ensembl	74_37	+1	known	missense	c.695	p.G232E	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PKNOX1	HGNC	ENSG00000160199				65	0	0	11	7	38.8889
PWP2	0	genome.wustl.edu	37	21	45539381	45539381	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	45539381	45539381	G	A	SNP	PWP2	ENST00000291576	human	ensembl	74_37	+1	known	missense	c.1165	p.V389M	0.290	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP2	HGNC	ENSG00000241945				8	0	0	1	3	75
KRTAP12-2	0	genome.wustl.edu	37	21	46086770	46086770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	46086770	46086770	G	A	SNP	KRTAP12-2	ENST00000360770	human	ensembl	74_37	-1	known	missense	c.34	p.P12S	0.284	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP12-2	HGNC	ENSG00000221864				68	0	0	19	9	32.1429
ITGB2	0	genome.wustl.edu	37	21	46330393	46330393	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	46330393	46330393	C	T	SNP	ITGB2	ENST00000523126	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	ITGB2	HGNC	ENSG00000160255				11	0	0	7	7	50
POFUT2	0	genome.wustl.edu	37	21	46705828	46705828	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	46705828	46705828	G	A	SNP	POFUT2	ENST00000349485	human	ensembl	74_37	-1	known	silent	c.147	p.D49	0.948	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866				153	0	0	62	34	35.4167
COL18A1	0	genome.wustl.edu	37	21	46924392	46924392	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	46924392	46924392	C	T	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	silent	c.4035	p.G1345	0.004	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				29	0	0	10	7	41.1765
PCNT	0	genome.wustl.edu	37	21	47831338	47831338	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	47831338	47831338	G	A	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.5351	p.R1784H	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				67	0	0	32	11	25.5814
ENSG00000273244	0	genome.wustl.edu	37	22	17172935	17172935	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	17172935	17172935	C	T	SNP	ENSG00000273244	ENST00000423580	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.802	-	-	-	no_errors	KB-7G2.8	Clone_based_vega_gene	ENSG00000273244				38	0	0	9	4	30.7692
XKR3	0	genome.wustl.edu	37	22	17265053	17265053	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	17265053	17265053	G	T	SNP	XKR3	ENST00000331428	human	ensembl	74_37	-1	known	missense	c.836	p.P279Q	0.995	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR3	HGNC	ENSG00000172967				53	0	0	25	9	26.4706
CECR6	0	genome.wustl.edu	37	22	17600895	17600895	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	17600895	17600895	C	T	SNP	CECR6	ENST00000331437	human	ensembl	74_37	-1	known	missense	c.1123	p.A375T	0.877	NULL	NULL	-	no_errors	CECR6	HGNC	ENSG00000183307				18	0	0	12	5	29.4118
PEX26	0	genome.wustl.edu	37	22	18566233	18566233	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	18566233	18566233	T	C	SNP	PEX26	ENST00000329627	human	ensembl	74_37	+1	known	silent	c.402	p.P134	0.045	pfam_Pex26	pfam_Pex26	-	no_errors	PEX26	HGNC	ENSG00000215193				404	0	0	129	55	29.8913
DGCR8	0	genome.wustl.edu	37	22	20073923	20073923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	20073923	20073923	C	T	SNP	DGCR8	ENST00000351989	human	ensembl	74_37	+1	known	missense	c.437	p.A146V	0.046	NULL	pfam_dsRNA-bd_dom,superfamily_WW_dom,smart_WW_dom,smart_dsRNA-bd_dom,pfscan_WW_dom,pfscan_dsRNA-bd_dom	-	no_errors	DGCR8	HGNC	ENSG00000128191				170	0	0	68	26	27.6596
GGTLC3	0	genome.wustl.edu	37	22	20366455	20366455	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	20366455	20366455	G	A	SNP	GGTLC3	ENST00000404912	human	ensembl	74_37	-1	known	silent	c.591	p.I197	0.856	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC3	HGNC	ENSG00000183038				238	0	0	54	32	37.2093
MED15	0	genome.wustl.edu	37	22	20918929	20918929	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	20918929	20918929	A	T	SNP	MED15	ENST00000263205	human	ensembl	74_37	+1	known	missense	c.644	p.Q215L	1.000	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917				37	0	0	18	11	37.931
MED15	0	genome.wustl.edu	37	22	20918930	20918930	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	20918930	20918930	G	C	SNP	MED15	ENST00000263205	human	ensembl	74_37	+1	known	missense	c.645	p.Q215H	0.994	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917				37	0	0	18	12	40
PI4KA	0	genome.wustl.edu	37	22	21064271	21064271	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	21064271	21064271	G	A	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	missense	c.6098	p.A2033V	0.998	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973				109	0	0	37	11	22.9167
LZTR1	0	genome.wustl.edu	37	22	21346541	21346541	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	21346541	21346541	C	T	SNP	LZTR1	ENST00000215739	human	ensembl	74_37	+1	known	silent	c.1032	p.S344	0.004	NULL	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949				66	0	0	29	10	25.641
HIC2	0	genome.wustl.edu	37	22	21800988	21800988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	21800988	21800988	C	T	SNP	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	missense	c.1804	p.R602C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				124	0	0	40	16	28.5714
YPEL1	0	genome.wustl.edu	37	22	22064942	22064942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	22064942	22064942	G	A	SNP	YPEL1	ENST00000339468	human	ensembl	74_37	-1	known	missense	c.92	p.A31V	1.000	pfam_Yippee/Mis18	pfam_Yippee/Mis18	-	no_errors	YPEL1	HGNC	ENSG00000100027				279	0	0	102	55	35.0318
ZNF280A	0	genome.wustl.edu	37	22	22869135	22869135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	22869135	22869135	C	T	SNP	ZNF280A	ENST00000302097	human	ensembl	74_37	-1	known	missense	c.820	p.V274M	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280A	HGNC	ENSG00000169548				156	1	0.636943	94	35	27.1318
BCR	0	genome.wustl.edu	37	22	23541506	23541506	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	23541506	23541506	A	G	SNP	BCR	ENST00000487679	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	BCR	HGNC	ENSG00000186716				136	0	0	47	25	34.7222
UPB1	0	genome.wustl.edu	37	22	24898311	24898311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	24898311	24898311	G	A	SNP	UPB1	ENST00000382760	human	ensembl	74_37	+1	putative	missense	c.371	p.R124H	0.212	NULL	superfamily_C-N_Hydrolase	-	no_errors	UPB1	HGNC	ENSG00000100024				52	0	0	36	11	23.4043
AP1B1	0	genome.wustl.edu	37	22	29727444	29727444	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	29727444	29727444	T	C	SNP	AP1B1	ENST00000357586	human	ensembl	74_37	-1	known	missense	c.2518	p.K840E	1.000	pfam_B-adaptin_app_sub_C,superfamily_Coatomer/calthrin_app_sub_C	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				364	0	0	107	46	30.0654
TBC1D10A	0	genome.wustl.edu	37	22	30691731	30691731	+	Silent	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	30691731	30691731	G	C	SNP	TBC1D10A	ENST00000215790	human	ensembl	74_37	-1	known	silent	c.519	p.G173	0.998	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10A	HGNC	ENSG00000099992				61	0	0	20	15	42.8571
DEPDC5	0	genome.wustl.edu	37	22	32242937	32242937	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	32242937	32242937	A	G	SNP	DEPDC5	ENST00000266091	human	ensembl	74_37	+1	known	missense	c.3139	p.M1047V	0.998	NULL	pfam_IML1,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150				91	0	0	35	11	23.913
MYH9	0	genome.wustl.edu	37	22	36681986	36681986	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	36681986	36681986	G	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.5075	p.A1692V	0.998	pfam_Myosin_tail,superfamily_tRNA-bd_arm	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				65	0	0	16	3	15.7895
CSF2RB	0	genome.wustl.edu	37	22	37329915	37329915	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	37329915	37329915	C	T	SNP	CSF2RB	ENST00000262825	human	ensembl	74_37	+1	known	silent	c.1212	p.A404	0.000	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368				28	0	0	10	6	37.5
TRIOBP	0	genome.wustl.edu	37	22	38154108	38154108	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	38154108	38154108	G	T	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.6176	p.G2059V	0.824	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				78	0	0	13	17	56.6667
GCAT	0	genome.wustl.edu	37	22	38208895	38208895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	38208895	38208895	G	A	SNP	GCAT	ENST00000248924	human	ensembl	74_37	+1	known	missense	c.329	p.S110N	1.000	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_2am3keto_CoA_ligase	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_2am3keto_CoA_ligase	-	no_errors	GCAT	HGNC	ENSG00000100116				153	0	0	35	14	28.5714
BAIAP2L2	0	genome.wustl.edu	37	22	38483195	38483195	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	38483195	38483195	T	C	SNP	BAIAP2L2	ENST00000381669	human	ensembl	74_37	-1	known	missense	c.1195	p.M399V	0.008	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L2	HGNC	ENSG00000128298				47	0	0	21	2	8.69565
NPTXR	0	genome.wustl.edu	37	22	39222642	39222642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	39222642	39222642	C	T	SNP	NPTXR	ENST00000333039	human	ensembl	74_37	-1	known	missense	c.961	p.A321T	0.859	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTXR	HGNC	ENSG00000221890				144	0	0	47	19	28.7879
APOBEC3D	0	genome.wustl.edu	37	22	39427960	39427960	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	39427960	39427960	A	G	SNP	APOBEC3D	ENST00000216099	human	ensembl	74_37	+1	known	missense	c.1024	p.K342E	0.000	pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3D	HGNC	ENSG00000243811				115	0	0	87	15	14.7059
TAB1	0	genome.wustl.edu	37	22	39817856	39817856	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	39817856	39817856	C	T	SNP	TAB1	ENST00000216160	human	ensembl	74_37	+1	known	silent	c.801	p.I267	0.992	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	TAB1	HGNC	ENSG00000100324				108	0	0	31	18	36.7347
CACNA1I	0	genome.wustl.edu	37	22	40056439	40056439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	40056439	40056439	G	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.2713	p.G905R	0.323	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				41	0	0	8	4	33.3333
DNAJB7	0	genome.wustl.edu	37	22	41257619	41257619	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	41257619	41257619	T	C	SNP	DNAJB7	ENST00000307221	human	ensembl	74_37	-1	known	missense	c.380	p.Y127C	0.000	superfamily_ConA-like_lec_gl_sf	pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_ConA-like_lec_gl_sf,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB7	HGNC	ENSG00000172404				175	0	0	81	27	25
RRP7B	0	genome.wustl.edu	37	22	42970799	42970799	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	42970799	42970799	A	G	SNP	RRP7B	ENST00000357802	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.839	-	-	-	no_errors	RRP7B	HGNC	ENSG00000182841				36	0	0	22	3	12
A4GALT	0	genome.wustl.edu	37	22	43089138	43089138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	43089138	43089138	G	A	SNP	A4GALT	ENST00000249005	human	ensembl	74_37	-1	known	missense	c.820	p.R274C	0.962	pfam_A1-4-GlycosylTfrase_dom	pfam_A1-4-GlycosylTfrase_dom,pfam_GlycoTrfase_DXD_sugar-bd_CS	-	no_errors	A4GALT	HGNC	ENSG00000128274				23	0	0	6	8	57.1429
NUP50	0	genome.wustl.edu	37	22	45580379	45580379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	45580379	45580379	C	T	SNP	NUP50	ENST00000347635	human	ensembl	74_37	+1	known	missense	c.1250	p.T417M	0.826	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_NUP2/50/61,pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	NUP50	HGNC	ENSG00000093000				84	0	0	40	13	24.5283
CELSR1	0	genome.wustl.edu	37	22	46765689	46765689	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	46765689	46765689	C	T	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.7772	p.G2591D	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				77	0	0	25	8	24.2424
BRD1	0	genome.wustl.edu	37	22	50169703	50169703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	50169703	50169703	C	T	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	missense	c.2833	p.A945T	0.998	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425				57	0	0	18	12	40
MOV10L1	0	genome.wustl.edu	37	22	50582604	50582604	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	50582604	50582604	C	T	SNP	MOV10L1	ENST00000262794	human	ensembl	74_37	+1	known	silent	c.2437	p.L813	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold	-	no_errors	MOV10L1	HGNC	ENSG00000073146				185	0	0	77	46	37.3984
MAPK8IP2	0	genome.wustl.edu	37	22	51043393	51043393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	51043393	51043393	G	A	SNP	MAPK8IP2	ENST00000329492	human	ensembl	74_37	+1	known	missense	c.1663	p.G555S	0.002	superfamily_SH3_domain	pfam_PTB/PI_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP2	HGNC	ENSG00000008735				54	0	0	26	7	21.2121
NIT2	0	genome.wustl.edu	37	3	100074044	100074044	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	100074044	100074044	C	T	SNP	NIT2	ENST00000394140	human	ensembl	74_37	+1	known	missense	c.763	p.R255C	1.000	superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	NIT2	HGNC	ENSG00000114021				66	0	0	29	12	29.2683
ABI3BP	0	genome.wustl.edu	37	3	100621530	100621530	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	100621530	100621530	T	C	SNP	ABI3BP	ENST00000284322	human	ensembl	74_37	-1	known	missense	c.281	p.D94G	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175				50	0	0	12	6	33.3333
CEP97	0	genome.wustl.edu	37	3	101477207	101477207	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	101477207	101477207	A	G	SNP	CEP97	ENST00000327230	human	ensembl	74_37	+1	known	missense	c.1757	p.Y586C	0.962	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CEP97	HGNC	ENSG00000182504				136	0	0	59	15	20.2703
ZPLD1	0	genome.wustl.edu	37	3	102196407	102196407	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	102196407	102196407	G	T	SNP	ZPLD1	ENST00000306176	human	ensembl	74_37	+1	known	missense	c.1241	p.R414M	1.000	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	ZPLD1	HGNC	ENSG00000170044				213	1	0.46729	122	43	26.0606
MYH15	0	genome.wustl.edu	37	3	108159966	108159966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	108159966	108159966	G	A	SNP	MYH15	ENST00000273353	human	ensembl	74_37	-1	known	missense	c.2857	p.R953W	0.999	superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821				178	1	0.558659	83	38	31.405
DZIP3	0	genome.wustl.edu	37	3	108363342	108363342	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	108363342	108363342	G	A	SNP	DZIP3	ENST00000361582	human	ensembl	74_37	+1	known	silent	c.1473	p.P491	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919				145	0	0	117	9	7.14286
SLC6A1	0	genome.wustl.edu	37	3	11059528	11059528	+	Splice_Site	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	11059528	11059528	G	T	SNP	SLC6A1	ENST00000287766	human	ensembl	74_37	+1	known	splice_site	c.239-1	e2-1	1.000	-	-	-	no_errors	SLC6A1	HGNC	ENSG00000157103				105	0	0	40	12	23.0769
PHLDB2	0	genome.wustl.edu	37	3	111632563	111632563	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	111632563	111632563	A	G	SNP	PHLDB2	ENST00000477695	human	ensembl	74_37	+1	putative	missense	c.1733	p.Q578R	0.005	NULL	NULL	-	no_errors	PHLDB2	HGNC	ENSG00000144824				268	0	0	115	44	27.673
SLC9C1	0	genome.wustl.edu	37	3	111983101	111983101	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	111983101	111983101	T	C	SNP	SLC9C1	ENST00000305815	human	ensembl	74_37	-1	known	missense	c.968	p.E323G	0.821	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C1	HGNC	ENSG00000172139				20	0	0	6	5	45.4545
BOC	0	genome.wustl.edu	37	3	112992173	112992173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	112992173	112992173	C	T	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	missense	c.1219	p.R407W	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				32	0	0	27	6	18.1818
BOC	0	genome.wustl.edu	37	3	113003371	113003371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	113003371	113003371	C	T	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	missense	c.2846	p.P949L	0.008	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				44	0	0	23	12	34.2857
IGSF11	0	genome.wustl.edu	37	3	118621453	118621453	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	118621453	118621453	A	G	SNP	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	missense	c.1210	p.Y404H	1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847				123	0	0	63	32	33.6842
C3orf30	0	genome.wustl.edu	37	3	118866418	118866418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	118866418	118866418	C	T	SNP	C3orf30	ENST00000295622	human	ensembl	74_37	+1	known	missense	c.1382	p.A461V	0.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C3orf30	HGNC	ENSG00000163424				135	0	0	56	4	6.66667
POGLUT1	0	genome.wustl.edu	37	3	119198988	119198988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	119198988	119198988	C	T	SNP	POGLUT1	ENST00000295588	human	ensembl	74_37	+1	known	missense	c.547	p.R183W	1.000	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,smart_LipoPS_modifying	-	no_errors	POGLUT1	HGNC	ENSG00000163389				84	0	0	42	18	30
GOLGB1	0	genome.wustl.edu	37	3	121395743	121395743	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	121395743	121395743	G	A	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	silent	c.9159	p.S3053	1.000	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				89	0	0	47	16	25.3968
EAF2	0	genome.wustl.edu	37	3	121554180	121554180	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	121554180	121554180	T	C	SNP	EAF2	ENST00000273668	human	ensembl	74_37	+1	known	silent	c.48	p.V16	0.999	pfam_Tscrpt_elong_fac_Eaf_N	pfam_Tscrpt_elong_fac_Eaf_N	-	no_errors	EAF2	HGNC	ENSG00000145088				98	0	0	20	7	25.9259
DTX3L	0	genome.wustl.edu	37	3	122289345	122289345	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	122289345	122289345	G	A	SNP	DTX3L	ENST00000296161	human	ensembl	74_37	+1	known	missense	c.1979	p.R660Q	0.745	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840				112	0	0	51	22	30.137
PARP14	0	genome.wustl.edu	37	3	122399864	122399864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	122399864	122399864	G	A	SNP	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	missense	c.134	p.R45H	0.000	NULL	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				50	0	0	5	5	50
SEMA5B	0	genome.wustl.edu	37	3	122634315	122634315	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	122634315	122634315	G	T	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	missense	c.2122	p.P708T	1.000	superfamily_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				115	0	0	47	16	25.3968
HEG1	0	genome.wustl.edu	37	3	124731472	124731472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	124731472	124731472	G	A	SNP	HEG1	ENST00000311127	human	ensembl	74_37	-1	known	missense	c.2951	p.A984V	0.951	NULL	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706				44	0	0	15	5	25
MIR548I1	0	genome.wustl.edu	37	3	125509345	125509345	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	125509345	125509345	C	T	SNP	MIR548I1	ENST00000408810	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	MIR548I1	HGNC	ENSG00000221737				127	0	0	67	30	30.9278
CAND2	0	genome.wustl.edu	37	3	12856666	12856666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	12856666	12856666	G	A	SNP	CAND2	ENST00000456430	human	ensembl	74_37	+1	known	missense	c.1033	p.D345N	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712				118	0	0	39	16	29.0909
IQSEC1	0	genome.wustl.edu	37	3	12977371	12977371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	12977371	12977371	G	A	SNP	IQSEC1	ENST00000273221	human	ensembl	74_37	-1	known	missense	c.1187	p.S396L	0.999	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC1	HGNC	ENSG00000144711				67	0	0	24	18	42.8571
COL6A6	0	genome.wustl.edu	37	3	130346200	130346200	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	130346200	130346200	G	A	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.4979	p.R1660H	0.001	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				92	0	0	56	4	6.66667
CPNE4	0	genome.wustl.edu	37	3	131388544	131388544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	131388544	131388544	C	T	SNP	CPNE4	ENST00000502818	human	ensembl	74_37	-1	known	missense	c.710	p.S237N	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE4	HGNC	ENSG00000196353				253	0	0	79	30	27.5229
NUP210	0	genome.wustl.edu	37	3	13363299	13363299	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	13363299	13363299	G	A	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	missense	c.4952	p.T1651M	0.907	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				457	0	0	179	73	28.9683
DZIP1L	0	genome.wustl.edu	37	3	137822384	137822384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	137822384	137822384	G	A	SNP	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	missense	c.430	p.R144C	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163				32	0	0	14	6	30
DZIP1L	0	genome.wustl.edu	37	3	137822423	137822423	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	137822423	137822423	G	A	SNP	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	missense	c.391	p.R131C	0.170	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163				21	0	0	14	7	33.3333
ARMC8	0	genome.wustl.edu	37	3	137953909	137953909	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	137953909	137953909	G	T	SNP	ARMC8	ENST00000469044	human	ensembl	74_37	+1	known	missense	c.562	p.G188C	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC8	HGNC	ENSG00000114098				50	0	0	33	4	10.8108
CLSTN2	0	genome.wustl.edu	37	3	140282887	140282887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	140282887	140282887	G	A	SNP	CLSTN2	ENST00000458420	human	ensembl	74_37	+1	known	missense	c.2567	p.R856Q	0.964	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258				184	0	0	72	35	32.7103
CHST2	0	genome.wustl.edu	37	3	142840396	142840396	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	142840396	142840396	G	A	SNP	CHST2	ENST00000309575	human	ensembl	74_37	+1	known	silent	c.738	p.T246	0.928	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040				47	0	0	27	11	28.9474
ZIC4	0	genome.wustl.edu	37	3	147113965	147113965	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	147113965	147113965	C	T	SNP	ZIC4	ENST00000525172	human	ensembl	74_37	-1	known	missense	c.512	p.R171H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC4	HGNC	ENSG00000174963				88	0	0	39	22	36.0656
ZIC1	0	genome.wustl.edu	37	3	147128745	147128745	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	147128745	147128745	C	A	SNP	ZIC1	ENST00000282928	human	ensembl	74_37	+1	known	silent	c.846	p.P282	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC1	HGNC	ENSG00000152977				187	0	0	63	18	22.2222
CPB1	0	genome.wustl.edu	37	3	148545657	148545657	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	148545657	148545657	A	G	SNP	CPB1	ENST00000282957	human	ensembl	74_37	+1	known	missense	c.47	p.H16R	0.959	superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB1	HGNC	ENSG00000153002				81	0	0	33	19	36.5385
HLTF	0	genome.wustl.edu	37	3	148789134	148789134	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	148789134	148789134	G	A	SNP	HLTF	ENST00000310053	human	ensembl	74_37	-1	known	nonsense	c.799	p.R267*	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HLTF	HGNC	ENSG00000071794				63	0	0	33	17	34
FGD5	0	genome.wustl.edu	37	3	14964562	14964562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	14964562	14964562	C	T	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	missense	c.3817	p.R1273W	1.000	pfam_Znf_FYVE,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783				128	0	0	34	12	26.087
FAM194A	0	genome.wustl.edu	37	3	150421356	150421356	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	150421356	150421356	G	A	SNP	FAM194A	ENST00000295910	human	ensembl	74_37	-1	known	silent	c.330	p.F110	0.000	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645				66	0	0	21	9	30
MED12L	0	genome.wustl.edu	37	3	151112591	151112591	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	151112591	151112591	A	G	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.5651	p.K1884R	1.000	pfam_Mediator_Med12_catenin-bd	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				164	0	0	61	24	28.2353
C3orf55	0	genome.wustl.edu	37	3	157296111	157296111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	157296111	157296111	C	T	SNP	C3orf55	ENST00000312275	human	ensembl	74_37	+1	known	missense	c.346	p.H116Y	0.053	NULL	NULL	-	no_errors	C3orf55	HGNC	ENSG00000174899				36	0	0	9	8	47.0588
ZBBX	0	genome.wustl.edu	37	3	167035316	167035316	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	167035316	167035316	A	G	SNP	ZBBX	ENST00000307529	human	ensembl	74_37	-1	known	silent	c.1053	p.D351	0.046	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064				105	0	0	49	25	33.7838
ENSG00000270135	0	genome.wustl.edu	37	3	169511641	169511641	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	169511641	169511641	A	G	SNP	ENSG00000270135	ENST00000602913	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.067	-	-	-	no_errors	RP11-362K14.7	Clone_based_vega_gene	ENSG00000270135				40	0	0	23	9	28.125
TNIK	0	genome.wustl.edu	37	3	170781609	170781609	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	170781609	170781609	T	C	SNP	TNIK	ENST00000464785	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.854	-	-	-	no_errors	TNIK	HGNC	ENSG00000154310				16	0	0	12	3	20
DVL3	0	genome.wustl.edu	37	3	183884401	183884401	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	183884401	183884401	A	G	SNP	DVL3	ENST00000313143	human	ensembl	74_37	+1	known	missense	c.988	p.T330A	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,prints_Dishevelled_fam	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam,prints_Dishevelled_3	-	no_errors	DVL3	HGNC	ENSG00000161202				50	0	0	31	15	32.6087
ABCF3	0	genome.wustl.edu	37	3	183906039	183906039	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	183906039	183906039	G	C	SNP	ABCF3	ENST00000429586	human	ensembl	74_37	+1	known	missense	c.680	p.S227T	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF3	HGNC	ENSG00000161204				159	0	0	70	35	33.3333
CAMK2N2	0	genome.wustl.edu	37	3	183978963	183978963	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	183978963	183978963	G	A	SNP	CAMK2N2	ENST00000296238	human	ensembl	74_37	-1	known	silent	c.111	p.F37	1.000	NULL	NULL	-	no_errors	CAMK2N2	HGNC	ENSG00000163888				44	0	0	6	5	45.4545
AHSG	0	genome.wustl.edu	37	3	186330969	186330969	+	Silent	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	186330969	186330969	C	G	SNP	AHSG	ENST00000411641	human	ensembl	74_37	+1	known	silent	c.39	p.L13	0.741	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	AHSG	HGNC	ENSG00000145192				69	0	0	30	4	11.7647
FETUB	0	genome.wustl.edu	37	3	186360342	186360342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	186360342	186360342	G	A	SNP	FETUB	ENST00000265029	human	ensembl	74_37	+1	known	missense	c.419	p.R140H	1.000	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512				129	0	0	43	16	27.1186
BCL6	0	genome.wustl.edu	37	3	187446201	187446201	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	187446201	187446201	G	A	SNP	BCL6	ENST00000232014	human	ensembl	74_37	-1	known	missense	c.1487	p.T496M	0.982	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6	HGNC	ENSG00000113916				19	0	0	3	4	57.1429
LPP	0	genome.wustl.edu	37	3	188123973	188123973	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	188123973	188123973	G	A	SNP	LPP	ENST00000312675	human	ensembl	74_37	+1	known	missense	c.65	p.R22Q	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012				305	0	0	102	48	32
GP5	0	genome.wustl.edu	37	3	194118562	194118562	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	194118562	194118562	C	A	SNP	GP5	ENST00000323007	human	ensembl	74_37	-1	known	missense	c.450	p.E150D	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732				111	0	0	54	23	29.8701
ATP13A3	0	genome.wustl.edu	37	3	194150868	194150868	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	194150868	194150868	C	T	SNP	ATP13A3	ENST00000256031	human	ensembl	74_37	-1	known	missense	c.2710	p.E904K	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A3	HGNC	ENSG00000133657				54	0	0	27	9	25
ACAP2	0	genome.wustl.edu	37	3	195027343	195027343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	195027343	195027343	C	T	SNP	ACAP2	ENST00000326793	human	ensembl	74_37	-1	known	missense	c.1013	p.S338N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP2	HGNC	ENSG00000114331				151	0	0	61	32	34.4086
MUC4	0	genome.wustl.edu	37	3	195511154	195511154	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	195511154	195511154	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.7297	p.L2433F	0.230	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				14	0	0	2	2	50
WDR53	0	genome.wustl.edu	37	3	196281462	196281462	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	196281462	196281462	G	A	SNP	WDR53	ENST00000332629	human	ensembl	74_37	-1	known	nonsense	c.697	p.Q233*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR53	HGNC	ENSG00000185798				441	0	0	148	61	29.1866
CNTN4	0	genome.wustl.edu	37	3	3078979	3078979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	3078979	3078979	C	T	SNP	CNTN4	ENST00000397461	human	ensembl	74_37	+1	known	missense	c.2059	p.R687C	0.899	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN4	HGNC	ENSG00000144619				433	0	0	140	36	20.4545
CRBN	0	genome.wustl.edu	37	3	3221317	3221317	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	3221317	3221317	G	A	SNP	CRBN	ENST00000231948	human	ensembl	74_37	-1	known	missense	c.55	p.P19S	1.000	NULL	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	-	no_errors	CRBN	HGNC	ENSG00000113851				35	0	0	13	6	31.5789
PDCD6IP	0	genome.wustl.edu	37	3	33877563	33877563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	33877563	33877563	G	A	SNP	PDCD6IP	ENST00000457054	human	ensembl	74_37	+1	known	missense	c.877	p.A293T	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248				137	0	0	52	29	35.8025
VILL	0	genome.wustl.edu	37	3	38039070	38039070	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	38039070	38039070	A	G	SNP	VILL	ENST00000283713	human	ensembl	74_37	+1	known	missense	c.658	p.M220V	1.000	smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				75	0	0	32	18	36
DLEC1	0	genome.wustl.edu	37	3	38159370	38159370	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	38159370	38159370	T	C	SNP	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	missense	c.4559	p.L1520P	1.000	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226				236	0	0	66	25	27.4725
SCN5A	0	genome.wustl.edu	37	3	38592496	38592496	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	38592496	38592496	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	silent	c.5367	p.D1789	0.991	prints_Na_channel_asu	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				134	0	0	57	23	28.75
SCN5A	0	genome.wustl.edu	37	3	38640419	38640419	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	38640419	38640419	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	silent	c.2013	p.S671	0.812	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				160	0	0	42	24	36.3636
SCN10A	0	genome.wustl.edu	37	3	38770179	38770179	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	38770179	38770179	T	C	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.2494	p.M832V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				89	0	0	42	23	35.3846
MYRIP	0	genome.wustl.edu	37	3	40293447	40293447	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	40293447	40293447	C	A	SNP	MYRIP	ENST00000302541	human	ensembl	74_37	+1	known	missense	c.2504	p.T835K	0.004	pfam_Myrip/Melanophilin	pfam_Myrip/Melanophilin,superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	MYRIP	HGNC	ENSG00000170011				66	0	0	26	8	23.5294
ZNF197	0	genome.wustl.edu	37	3	44670856	44670856	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	44670856	44670856	G	A	SNP	ZNF197	ENST00000344387	human	ensembl	74_37	+1	known	nonsense	c.210	p.W70*	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF197	HGNC	ENSG00000186448				134	0	0	56	26	31.7073
CLEC3B	0	genome.wustl.edu	37	3	45077264	45077264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	45077264	45077264	G	A	SNP	CLEC3B	ENST00000296130	human	ensembl	74_37	+1	known	missense	c.457	p.A153T	0.003	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC3B	HGNC	ENSG00000163815				89	0	0	31	18	36.7347
EXOSC7	0	genome.wustl.edu	37	3	45077417	45077417	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	45077417	45077417	C	T	SNP	EXOSC7	ENST00000481405	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.591	-	-	-	no_errors	EXOSC7	HGNC	ENSG00000075914				41	0	0	21	6	22.2222
FYCO1	0	genome.wustl.edu	37	3	46011206	46011206	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	46011206	46011206	G	T	SNP	FYCO1	ENST00000535325	human	ensembl	74_37	-1	known	silent	c.591	p.R197	0.996	NULL	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820				71	0	0	22	11	33.3333
FYCO1	0	genome.wustl.edu	37	3	46014624	46014624	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	46014624	46014624	C	T	SNP	FYCO1	ENST00000535325	human	ensembl	74_37	-1	known	silent	c.495	p.A165	0.034	pfam_Run,pfscan_Run	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820				115	0	0	39	18	31.5789
NME6	0	genome.wustl.edu	37	3	48336260	48336260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	48336260	48336260	G	A	SNP	NME6	ENST00000421967	human	ensembl	74_37	-1	known	missense	c.452	p.A151V	0.998	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME6	HGNC	ENSG00000172113				122	0	0	49	22	30.9859
PLXNB1	0	genome.wustl.edu	37	3	48451704	48451704	+	Splice_Site	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	48451704	48451704	C	T	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	splice_site	c.5605+1	e29+1	1.000	-	-	-	no_errors	PLXNB1	HGNC	ENSG00000164050				32	0	0	22	10	31.25
CELSR3	0	genome.wustl.edu	37	3	48696997	48696997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	48696997	48696997	C	T	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.3071	p.R1024Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				138	0	0	79	43	35.2459
CELSR3	0	genome.wustl.edu	37	3	48698761	48698761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	48698761	48698761	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.1307	p.A436V	0.943	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				94	0	0	29	21	42
P4HTM	0	genome.wustl.edu	37	3	49042339	49042339	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	49042339	49042339	C	G	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.933	p.S311R	0.096	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				151	0	0	52	31	37.3494
QRICH1	0	genome.wustl.edu	37	3	49094758	49094758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	49094758	49094758	G	A	SNP	QRICH1	ENST00000357496	human	ensembl	74_37	-1	known	missense	c.875	p.A292V	1.000	NULL	pfam_DUF3504,superfamily_DEATH-like_dom	-	no_errors	QRICH1	HGNC	ENSG00000198218				101	0	0	41	22	34.9206
CCDC36	0	genome.wustl.edu	37	3	49294662	49294662	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	49294662	49294662	A	G	SNP	CCDC36	ENST00000296449	human	ensembl	74_37	+1	known	missense	c.1732	p.K578E	0.032	NULL	NULL	-	no_errors	CCDC36	HGNC	ENSG00000173421				289	0	0	91	47	34.058
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				220	0	0	60	42	41.1765
DOCK3	0	genome.wustl.edu	37	3	51263127	51263127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	51263127	51263127	G	A	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.1300	p.E434K	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				186	0	0	62	20	24.3902
LINC00696	0	genome.wustl.edu	37	3	52097481	52097481	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	52097481	52097481	G	A	SNP	LINC00696	ENST00000541313	human	ensembl	74_37	-1	known	silent	c.87	p.G29	0.000	NULL	NULL	-	no_errors	LINC00696	HGNC	ENSG00000256097				24	0	0	25	3	10.7143
STAB1	0	genome.wustl.edu	37	3	52539758	52539758	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	52539758	52539758	C	A	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.1656	p.D552E	0.394	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				97	0	0	19	13	40.625
ITIH3	0	genome.wustl.edu	37	3	52839838	52839838	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	52839838	52839838	C	A	SNP	ITIH3	ENST00000449956	human	ensembl	74_37	+1	known	missense	c.1888	p.P630T	0.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267				141	0	0	37	17	31.4815
ENSG00000271976	0	genome.wustl.edu	37	3	53894152	53894152	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	53894152	53894152	T	C	SNP	ENSG00000271976	ENST00000607783	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	RP11-884K10.7	Clone_based_vega_gene	ENSG00000271976				274	0	0	69	36	34.2857
IL17RB	0	genome.wustl.edu	37	3	53894187	53894187	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	53894187	53894187	T	G	SNP	IL17RB	ENST00000288167	human	ensembl	74_37	+1	known	missense	c.878	p.L293R	0.421	NULL	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736				317	0	0	90	33	26.8293
WNT5A	0	genome.wustl.edu	37	3	55513442	55513442	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	55513442	55513442	C	T	SNP	WNT5A	ENST00000264634	human	ensembl	74_37	-1	known	silent	c.291	p.A97	0.662	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5A	HGNC	ENSG00000114251				124	1	0.8	46	23	33.3333
ARHGEF3	0	genome.wustl.edu	37	3	56789047	56789047	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	56789047	56789047	T	C	SNP	ARHGEF3	ENST00000338458	human	ensembl	74_37	-1	known	missense	c.433	p.N145D	1.000	superfamily_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF3	HGNC	ENSG00000163947				217	0	0	57	44	43.5644
PRICKLE2	0	genome.wustl.edu	37	3	64184616	64184616	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	64184616	64184616	G	T	SNP	PRICKLE2	ENST00000564377	human	ensembl	74_37	-1	novel	silent	c.156	p.P52	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637				72	0	0	43	14	24.5614
ADAMTS9	0	genome.wustl.edu	37	3	64607966	64607966	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	64607966	64607966	C	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	missense	c.2594	p.R865H	1.000	pfam_ADAM_spacer1	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				90	0	0	25	16	39.0244
GRM7	0	genome.wustl.edu	37	3	6903155	6903155	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	6903155	6903155	C	T	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.80	p.A27V	1.000	prints_GPCR_3_mtglu_rcpt_7	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				15	0	0	5	4	44.4444
MITF	0	genome.wustl.edu	37	3	69998213	69998213	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	69998213	69998213	G	A	SNP	MITF	ENST00000448226	human	ensembl	74_37	+1	known	silent	c.774	p.S258	0.064	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MITF	HGNC	ENSG00000187098				68	0	0	47	8	14.5455
FOXP1	0	genome.wustl.edu	37	3	71247446	71247446	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	71247446	71247446	G	A	SNP	FOXP1	ENST00000318789	human	ensembl	74_37	-1	known	silent	c.87	p.C29	0.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861				298	1	0.334448	134	11	7.58621
VGLL3	0	genome.wustl.edu	37	3	87027688	87027688	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	87027688	87027688	G	T	SNP	VGLL3	ENST00000398399	human	ensembl	74_37	-1	known	missense	c.391	p.P131T	1.000	NULL	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL3	HGNC	ENSG00000206538				212	0	0	54	35	39.3258
MINA	0	genome.wustl.edu	37	3	97686167	97686167	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	97686167	97686167	T	C	SNP	MINA	ENST00000333396	human	ensembl	74_37	-1	known	missense	c.271	p.S91G	0.651	pfam_JmjC_dom	pfam_JmjC_dom,pfscan_JmjC_dom	-	no_errors	MINA	HGNC	ENSG00000170854				441	0	0	161	76	32.0675
JAGN1	0	genome.wustl.edu	37	3	9934545	9934545	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	9934545	9934545	A	G	SNP	JAGN1	ENST00000489724	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	JAGN1	HGNC	ENSG00000171135				15	0	0	16	6	27.2727
DDIT4L	0	genome.wustl.edu	37	4	101108887	101108887	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	101108887	101108887	C	A	SNP	DDIT4L	ENST00000273990	human	ensembl	74_37	-1	known	missense	c.529	p.V177F	0.999	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358				113	0	0	32	13	28.8889
ZNF518B	0	genome.wustl.edu	37	4	10447795	10447795	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	10447795	10447795	G	A	SNP	ZNF518B	ENST00000326756	human	ensembl	74_37	-1	known	missense	c.158	p.A53V	0.258	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163				235	0	0	117	70	37.4332
ENPEP	0	genome.wustl.edu	37	4	111474510	111474510	+	Silent	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	111474510	111474510	T	G	SNP	ENPEP	ENST00000265162	human	ensembl	74_37	+1	known	silent	c.2541	p.T847	0.973	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792				154	0	0	65	28	30.1075
ARSJ	0	genome.wustl.edu	37	4	114824717	114824717	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	114824717	114824717	C	T	SNP	ARSJ	ENST00000315366	human	ensembl	74_37	-1	known	silent	c.513	p.T171	0.486	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSJ	HGNC	ENSG00000180801				225	0	0	96	54	36
KIAA1109	0	genome.wustl.edu	37	4	123193562	123193562	+	Splice_Site	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	123193562	123193562	T	C	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	splice_site	c.8446+2	e46+2	0.997	-	-	-	no_errors	KIAA1109	HGNC	ENSG00000138688				51	0	0	18	10	35.7143
FAT4	0	genome.wustl.edu	37	4	126372724	126372724	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	126372724	126372724	T	C	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.10553	p.M3518T	0.981	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				203	0	0	100	41	29.078
PCDH10	0	genome.wustl.edu	37	4	134073510	134073510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	134073510	134073510	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.2215	p.R739C	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				110	0	0	36	15	29.4118
INPP4B	0	genome.wustl.edu	37	4	143045801	143045801	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	143045801	143045801	C	T	SNP	INPP4B	ENST00000509777	human	ensembl	74_37	-1	known	silent	c.1833	p.A611	0.003	NULL	superfamily_C2_dom	-	no_errors	INPP4B	HGNC	ENSG00000109452				72	0	0	23	21	47.7273
HHIP	0	genome.wustl.edu	37	4	145629318	145629318	+	Splice_Site	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	145629318	145629318	A	G	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	splice_site	c.1158-2	e7-2	1.000	-	-	-	no_errors	HHIP	HGNC	ENSG00000164161				93	0	0	55	10	15.3846
ZNF827	0	genome.wustl.edu	37	4	146791492	146791492	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	146791492	146791492	G	T	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	missense	c.1886	p.S629Y	0.990	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612				163	0	0	46	21	31.3433
LRBA	0	genome.wustl.edu	37	4	151749605	151749605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	151749605	151749605	C	T	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.4898	p.G1633D	0.998	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				259	0	0	128	66	34.0206
TRIM2	0	genome.wustl.edu	37	4	154191516	154191516	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	154191516	154191516	C	A	SNP	TRIM2	ENST00000338700	human	ensembl	74_37	+1	known	silent	c.60	p.G20	1.000	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654				177	0	0	78	11	12.3596
KIAA0922	0	genome.wustl.edu	37	4	154519885	154519885	+	Splice_Site	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	154519885	154519885	G	A	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	splice_site	c.2266+1	e21+1	1.000	-	-	-	no_errors	KIAA0922	HGNC	ENSG00000121210				38	0	0	25	18	41.8605
FSTL5	0	genome.wustl.edu	37	4	162402271	162402271	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	162402271	162402271	C	A	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.1509	p.W503C	1.000	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				247	1	0.403226	96	10	9.43396
FSTL5	0	genome.wustl.edu	37	4	163032431	163032431	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	163032431	163032431	G	A	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	nonsense	c.118	p.R40*	0.999	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				214	1	0.465116	81	35	30.1724
NPY5R	0	genome.wustl.edu	37	4	164272058	164272058	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	164272058	164272058	T	C	SNP	NPY5R	ENST00000338566	human	ensembl	74_37	+1	known	silent	c.633	p.F211	0.985	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_NPY5_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	NPY5R	HGNC	ENSG00000164129				175	0	0	98	54	35.5263
ANXA10	0	genome.wustl.edu	37	4	169105789	169105789	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	169105789	169105789	G	A	SNP	ANXA10	ENST00000359299	human	ensembl	74_37	+1	known	missense	c.863	p.R288Q	0.013	pfam_Annexin_repeat,smart_Annexin_repeat	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinX	-	no_errors	ANXA10	HGNC	ENSG00000109511				247	0	0	80	35	30.4348
SH3RF1	0	genome.wustl.edu	37	4	170077617	170077617	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	170077617	170077617	C	A	SNP	SH3RF1	ENST00000284637	human	ensembl	74_37	-1	known	missense	c.607	p.A203S	1.000	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox,prints_SH3_domain	-	no_errors	SH3RF1	HGNC	ENSG00000154447				283	0	0	103	44	29.932
GLRA3	0	genome.wustl.edu	37	4	175749958	175749958	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	175749958	175749958	G	T	SNP	GLRA3	ENST00000274093	human	ensembl	74_37	-1	known	missense	c.5	p.A2D	1.000	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A3,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA3	HGNC	ENSG00000145451				80	0	0	28	16	36.3636
VEGFC	0	genome.wustl.edu	37	4	177650714	177650714	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	177650714	177650714	C	A	SNP	VEGFC	ENST00000280193	human	ensembl	74_37	-1	known	missense	c.334	p.A112S	1.000	NULL	pfam_PDGF/VEGF_dom,pfam_CXCXC_repeat,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	VEGFC	HGNC	ENSG00000150630				79	0	0	31	16	34.0426
NCAPG	0	genome.wustl.edu	37	4	17838908	17838908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	17838908	17838908	G	A	SNP	NCAPG	ENST00000251496	human	ensembl	74_37	+1	known	missense	c.2236	p.V746I	0.002	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805				92	0	0	49	24	32.8767
LETM1	0	genome.wustl.edu	37	4	1834632	1834632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	1834632	1834632	G	A	SNP	LETM1	ENST00000302787	human	ensembl	74_37	-1	known	missense	c.919	p.R307C	1.000	pfam_LETM1	pfam_LETM1,pfscan_EF_hand_dom	-	no_errors	LETM1	HGNC	ENSG00000168924				130	1	0.763359	52	29	35.8025
TENM3	0	genome.wustl.edu	37	4	183651421	183651421	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	183651421	183651421	C	T	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.2654	p.S885L	1.000	superfamily_CarboxyPept-like_regulatory	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				117	0	0	53	22	29.3333
SLIT2	0	genome.wustl.edu	37	4	20597434	20597434	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	20597434	20597434	G	A	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	silent	c.3297	p.T1099	0.032	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				146	0	0	60	34	36.1702
ZFYVE28	0	genome.wustl.edu	37	4	2306441	2306441	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	2306441	2306441	G	A	SNP	ZFYVE28	ENST00000290974	human	ensembl	74_37	-1	known	silent	c.1626	p.A542	0.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733				69	0	0	20	13	39.3939
RBPJ	0	genome.wustl.edu	37	4	26431567	26431567	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	26431567	26431567	C	T	SNP	RBPJ	ENST00000342295	human	ensembl	74_37	+1	known	silent	c.975	p.G325	0.061	pfam_Beta-trefoil_DNA-bd_dom,superfamily_Beta-trefoil_DNA-bd_dom	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,pfam_IPT,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJ	HGNC	ENSG00000168214				85	0	0	34	10	22.7273
SH3BP2	0	genome.wustl.edu	37	4	2831861	2831861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	2831861	2831861	C	T	SNP	SH3BP2	ENST00000503393	human	ensembl	74_37	+1	known	missense	c.1399	p.L467F	0.008	NULL	pfam_Pleckstrin_homology,pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	SH3BP2	HGNC	ENSG00000087266				37	0	0	19	6	24
PCDH7	0	genome.wustl.edu	37	4	30723161	30723161	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	30723161	30723161	C	T	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	silent	c.117	p.A39	0.656	pfam_Cadherin_N,superfamily_Cadherin-like	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				37	0	0	14	4	22.2222
ARAP2	0	genome.wustl.edu	37	4	36081868	36081868	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	36081868	36081868	C	T	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	silent	c.4578	p.T1526	0.993	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				55	0	0	37	9	19.5652
LOC401127	0	genome.wustl.edu	37	4	39482830	39482830	+	RNA	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	39482830	39482830	A	C	SNP	LOC401127	ENST00000513652	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-472B18.1	Clone_based_vega_gene	ENSG00000224097				120	0	0	36	16	30.7692
DCAF4L1	0	genome.wustl.edu	37	4	41984375	41984375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	41984375	41984375	C	T	SNP	DCAF4L1	ENST00000333141	human	ensembl	74_37	+1	known	missense	c.566	p.A189V	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L1	HGNC	ENSG00000182308				192	0	0	114	8	6.55738
GSX2	0	genome.wustl.edu	37	4	54966575	54966575	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	54966575	54966575	C	G	SNP	GSX2	ENST00000326902	human	ensembl	74_37	+1	known	missense	c.64	p.L22V	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GSX2	HGNC	ENSG00000180613				66	0	0	18	9	33.3333
C4orf6	0	genome.wustl.edu	37	4	5528018	5528018	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	5528018	5528018	T	C	SNP	C4orf6	ENST00000195455	human	ensembl	74_37	+1	known	missense	c.242	p.V81A	0.000	NULL	NULL	-	no_errors	C4orf6	HGNC	ENSG00000082929				125	0	0	34	12	26.087
PAICS	0	genome.wustl.edu	37	4	57318172	57318172	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	57318172	57318172	G	A	SNP	PAICS	ENST00000264221	human	ensembl	74_37	+1	known	silent	c.906	p.A302	0.092	pfam_N5-CAIR_Mutase_PurE_dom,superfamily_N5-CAIR_Mutase_PurE_dom,tigrfam_N5-CAIR_Mutase_PurE_dom	pfam_N5-CAIR_Mutase_PurE_dom,superfamily_N5-CAIR_Mutase_PurE_dom,tigrfam_N5-CAIR_Mutase_PurE_dom	-	no_errors	PAICS	HGNC	ENSG00000128050				20	0	0	7	3	30
LPHN3	0	genome.wustl.edu	37	4	62845386	62845386	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	62845386	62845386	C	T	SNP	LPHN3	ENST00000507625	human	ensembl	74_37	+1	known	missense	c.2911	p.R971W	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471				339	0	0	99	42	29.7872
MAN2B2	0	genome.wustl.edu	37	4	6611012	6611012	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	6611012	6611012	C	T	SNP	MAN2B2	ENST00000285599	human	ensembl	74_37	+1	known	nonsense	c.1993	p.Q665*	1.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288				59	0	0	18	8	30.7692
MFSD7	0	genome.wustl.edu	37	4	677076	677076	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	677076	677076	G	A	SNP	MFSD7	ENST00000404286	human	ensembl	74_37	-1	known	silent	c.1077	p.P359	0.926	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD7	HGNC	ENSG00000169026				106	0	0	48	18	27.2727
SCARB2	0	genome.wustl.edu	37	4	77095433	77095433	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	77095433	77095433	A	G	SNP	SCARB2	ENST00000264896	human	ensembl	74_37	-1	known	silent	c.858	p.S286	0.005	pfam_CD36	pfam_CD36,superfamily_NA-bd_OB-fold,prints_LimpII,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB2	HGNC	ENSG00000138760				191	0	0	110	8	6.77966
CPLX1	0	genome.wustl.edu	37	4	780365	780365	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	780365	780365	T	A	SNP	CPLX1	ENST00000304062	human	ensembl	74_37	-1	known	missense	c.329	p.E110V	1.000	pfam_Synaphin	pfam_Synaphin	-	no_errors	CPLX1	HGNC	ENSG00000168993				20	0	0	11	4	26.6667
THAP9	0	genome.wustl.edu	37	4	83838125	83838125	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	83838125	83838125	G	T	SNP	THAP9	ENST00000302236	human	ensembl	74_37	+1	known	missense	c.760	p.G254C	1.000	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152				199	0	0	88	29	24.7863
LIN54	0	genome.wustl.edu	37	4	83905920	83905920	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	83905920	83905920	A	G	SNP	LIN54	ENST00000340417	human	ensembl	74_37	-1	known	silent	c.78	p.D26	1.000	NULL	pfam_CRC	-	no_errors	LIN54	HGNC	ENSG00000189308				156	0	0	70	33	32.0388
ACOX3	0	genome.wustl.edu	37	4	8401309	8401309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	8401309	8401309	C	T	SNP	ACOX3	ENST00000356406	human	ensembl	74_37	-1	known	missense	c.847	p.E283K	0.921	superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008				124	0	0	34	15	30.6122
NKX6-1	0	genome.wustl.edu	37	4	85414577	85414577	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	85414577	85414577	G	T	SNP	NKX6-1	ENST00000295886	human	ensembl	74_37	-1	known	missense	c.969	p.D323E	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	NKX6-1	HGNC	ENSG00000163623				176	0	0	63	19	23.1707
FAM13A	0	genome.wustl.edu	37	4	89653284	89653284	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	89653284	89653284	G	A	SNP	FAM13A	ENST00000264344	human	ensembl	74_37	-1	known	silent	c.2712	p.T904	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640				101	0	0	41	32	43.8356
FAM90A26	0	genome.wustl.edu	37	4	9175549	9175549	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	9175549	9175549	A	G	SNP	FAM90A26	ENST00000432515	human	ensembl	74_37	+1	known	missense	c.157	p.M53V	0.002	superfamily_Znf_CCHC	superfamily_Znf_CCHC	-	no_errors	FAM90A26	HGNC	ENSG00000229924				19	0	0	10	13	56.5217
GRID2	0	genome.wustl.edu	37	4	94138146	94138146	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	94138146	94138146	A	G	SNP	GRID2	ENST00000505687	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208				60	0	0	35	18	33.9623
UNC5C	0	genome.wustl.edu	37	4	96140171	96140171	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	96140171	96140171	C	T	SNP	UNC5C	ENST00000453304	human	ensembl	74_37	-1	known	missense	c.1594	p.A532T	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5C	HGNC	ENSG00000182168				119	0	0	50	27	35.0649
ST8SIA4	0	genome.wustl.edu	37	5	100238558	100238558	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	100238558	100238558	C	T	SNP	ST8SIA4	ENST00000231461	human	ensembl	74_37	-1	known	silent	c.102	p.T34	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532				58	0	0	21	6	22.2222
PAM	0	genome.wustl.edu	37	5	102237087	102237087	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	102237087	102237087	C	T	SNP	PAM	ENST00000304400	human	ensembl	74_37	+1	known	nonsense	c.238	p.R80*	0.995	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730				43	0	0	12	3	20
MCC	0	genome.wustl.edu	37	5	112824048	112824048	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	112824048	112824048	T	C	SNP	MCC	ENST00000408903	human	ensembl	74_37	-1	putative	missense	c.64	p.S22G	0.854	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MCC	HGNC	ENSG00000171444				28	0	0	10	6	37.5
KCNN2	0	genome.wustl.edu	37	5	113698754	113698754	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	113698754	113698754	C	T	SNP	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	silent	c.282	p.G94	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709				33	0	0	16	7	30.4348
CTNND2	0	genome.wustl.edu	37	5	11384885	11384885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	11384885	11384885	C	T	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.1069	p.A357T	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				36	0	0	7	3	30
TICAM2	0	genome.wustl.edu	37	5	114952054	114952054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	114952054	114952054	C	T	SNP	TICAM2	ENST00000408996	human	ensembl	74_37	-1	known	missense	c.527	p.R176Q	1.000	pfam_GOLD	pfam_GOLD,pfam_TIR_dom,superfamily_GOLD,superfamily_TIR_dom,pfscan_GOLD,pfscan_TIR_dom	-	no_errors	TICAM2	HGNC	ENSG00000243414				103	0	0	66	25	27.4725
SNX24	0	genome.wustl.edu	37	5	122272504	122272504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	122272504	122272504	C	T	SNP	SNX24	ENST00000261369	human	ensembl	74_37	+1	known	missense	c.136	p.H46Y	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX24	HGNC	ENSG00000064652				105	0	0	26	4	13.3333
CHSY3	0	genome.wustl.edu	37	5	129521085	129521085	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	129521085	129521085	T	C	SNP	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	silent	c.2250	p.Y750	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108				173	0	0	90	39	30.2326
NEUROG1	0	genome.wustl.edu	37	5	134871112	134871112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	134871112	134871112	C	T	SNP	NEUROG1	ENST00000314744	human	ensembl	74_37	-1	known	missense	c.269	p.R90H	0.999	superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NEUROG1	HGNC	ENSG00000181965				16	0	0	5	4	44.4444
SLC25A48	0	genome.wustl.edu	37	5	135186132	135186132	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	135186132	135186132	G	A	SNP	SLC25A48	ENST00000420621	human	ensembl	74_37	+1	known	missense	c.109	p.V37I	0.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A48	HGNC	ENSG00000145832				101	0	0	40	15	27.2727
SPOCK1	0	genome.wustl.edu	37	5	136834173	136834173	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	136834173	136834173	G	A	SNP	SPOCK1	ENST00000282223	human	ensembl	74_37	-1	known	silent	c.75	p.D25	0.971	NULL	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK1	HGNC	ENSG00000152377				19	0	0	6	5	45.4545
MYOT	0	genome.wustl.edu	37	5	137221839	137221839	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	137221839	137221839	C	A	SNP	MYOT	ENST00000239926	human	ensembl	74_37	+1	known	missense	c.1127	p.P376H	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYOT	HGNC	ENSG00000120729				145	0	0	40	21	34.4262
FAM13B	0	genome.wustl.edu	37	5	137288332	137288332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	137288332	137288332	G	A	SNP	FAM13B	ENST00000033079	human	ensembl	74_37	-1	known	missense	c.1849	p.R617W	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003				106	0	0	48	16	25
DNAH5	0	genome.wustl.edu	37	5	13729644	13729644	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	13729644	13729644	A	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.11787	p.A3929	0.777	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				80	0	0	52	23	30.6667
BRD8	0	genome.wustl.edu	37	5	137503737	137503737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	137503737	137503737	C	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.673	p.G225C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				179	0	0	52	41	44.086
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				180	0	0	49	54	52.4272
EGR1	0	genome.wustl.edu	37	5	137802757	137802757	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	137802757	137802757	C	T	SNP	EGR1	ENST00000239938	human	ensembl	74_37	+1	known	missense	c.619	p.P207S	1.000	pfam_DUF3446	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738				389	0	0	123	47	27.6471
DNAH5	0	genome.wustl.edu	37	5	13809285	13809285	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	13809285	13809285	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.7620	p.T2540	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				134	0	0	57	15	20.8333
CYSTM1	0	genome.wustl.edu	37	5	139574029	139574029	+	Splice_Site	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	139574029	139574029	A	C	SNP	CYSTM1	ENST00000261811	human	ensembl	74_37	+1	known	splice_site	c.1-2	e1-2	0.962	-	-	-	no_errors	CYSTM1	HGNC	ENSG00000120306				126	0	0	51	26	33.7662
PCDHA1	0	genome.wustl.edu	37	5	140167456	140167456	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140167456	140167456	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	silent	c.1581	p.E527	0.965	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				217	0	0	76	43	36.1345
PCDHA10	0	genome.wustl.edu	37	5	140237453	140237453	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140237453	140237453	C	T	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	missense	c.1820	p.S607L	0.757	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120				95	0	0	34	13	27.6596
PCDHA11	0	genome.wustl.edu	37	5	140250710	140250710	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140250710	140250710	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	silent	c.2022	p.A674	0.001	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				105	0	0	33	13	28.2609
PCDHA12	0	genome.wustl.edu	37	5	140256956	140256956	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140256956	140256956	G	A	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	silent	c.1899	p.T633	0.351	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				142	0	0	56	25	30.8642
PCDHA13	0	genome.wustl.edu	37	5	140261916	140261916	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140261916	140261916	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.63	p.L21	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				264	0	0	120	49	28.9941
PCDHA13	0	genome.wustl.edu	37	5	140263419	140263419	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140263419	140263419	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.1566	p.P522	0.903	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				264	0	0	102	48	32
PCDHAC1	0	genome.wustl.edu	37	5	140307012	140307012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140307012	140307012	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	missense	c.535	p.G179S	0.735	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				160	0	0	57	9	13.6364
PCDHAC2	0	genome.wustl.edu	37	5	140348078	140348078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140348078	140348078	C	T	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	missense	c.1727	p.A576V	1.000	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				70	0	0	46	24	34.2857
PCDHAC2	0	genome.wustl.edu	37	5	140348558	140348558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140348558	140348558	C	T	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	missense	c.2207	p.A736V	0.923	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				104	0	0	43	11	20.3704
PCDHB3	0	genome.wustl.edu	37	5	140482079	140482079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140482079	140482079	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1846	p.G616S	0.778	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				185	1	0.537634	78	30	27.7778
PCDHB12	0	genome.wustl.edu	37	5	140590138	140590138	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140590138	140590138	C	T	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	silent	c.1659	p.D553	0.635	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				145	0	0	50	26	34.2105
PCDHGA5	0	genome.wustl.edu	37	5	140745565	140745565	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140745565	140745565	C	T	SNP	PCDHGA5	ENST00000518069	human	ensembl	74_37	+1	known	silent	c.1668	p.N556	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485				378	1	0.263852	153	52	25.3659
PCDHGB6	0	genome.wustl.edu	37	5	140787998	140787998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140787998	140787998	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	missense	c.229	p.V77I	0.269	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				163	0	0	73	26	26.2626
PCDHGA10	0	genome.wustl.edu	37	5	140795118	140795118	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140795118	140795118	C	T	SNP	PCDHGA10	ENST00000398610	human	ensembl	74_37	+1	known	silent	c.2376	p.N792	0.864	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846				151	0	0	75	24	24.2424
DIAPH1	0	genome.wustl.edu	37	5	140953109	140953109	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140953109	140953109	T	G	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	missense	c.2308	p.K770Q	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				159	0	0	38	27	41.5385
DIAPH1	0	genome.wustl.edu	37	5	140958108	140958108	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140958108	140958108	G	A	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	missense	c.1018	p.R340C	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				195	0	0	73	28	27.7228
ARAP3	0	genome.wustl.edu	37	5	141044603	141044603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	141044603	141044603	C	T	SNP	ARAP3	ENST00000239440	human	ensembl	74_37	-1	known	missense	c.2686	p.A896T	0.000	smart_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318				37	0	0	16	8	33.3333
CSF1R	0	genome.wustl.edu	37	5	149449476	149449476	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	149449476	149449476	G	A	SNP	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	silent	c.1470	p.S490	0.002	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578				92	0	0	24	11	31.4286
ZNF300P1	0	genome.wustl.edu	37	5	150310338	150310338	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	150310338	150310338	A	G	SNP	ZNF300P1	ENST00000520773	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.543	-	-	-	no_errors	ZNF300P1	HGNC	ENSG00000197083				14	0	0	4	5	55.5556
NMUR2	0	genome.wustl.edu	37	5	151783947	151783947	+	Splice_Site	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	151783947	151783947	A	G	SNP	NMUR2	ENST00000255262	human	ensembl	74_37	-1	known	splice_site	c.726+2	e1+2	1.000	-	-	-	no_errors	NMUR2	HGNC	ENSG00000132911				125	0	0	49	18	26.8657
GRIA1	0	genome.wustl.edu	37	5	152873616	152873616	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	152873616	152873616	A	G	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	missense	c.241	p.T81A	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				96	0	0	45	17	27.4194
KIF4B	0	genome.wustl.edu	37	5	154394713	154394713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	154394713	154394713	G	A	SNP	KIF4B	ENST00000435029	human	ensembl	74_37	+1	known	missense	c.1294	p.A432T	0.998	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650				161	0	0	66	32	32.6531
KIF4B	0	genome.wustl.edu	37	5	154396039	154396039	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	154396039	154396039	C	T	SNP	KIF4B	ENST00000435029	human	ensembl	74_37	+1	known	silent	c.2620	p.L874	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650				90	0	0	29	15	34.0909
SOX30	0	genome.wustl.edu	37	5	157078494	157078494	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	157078494	157078494	C	T	SNP	SOX30	ENST00000265007	human	ensembl	74_37	-1	known	missense	c.593	p.G198D	0.011	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX30	HGNC	ENSG00000039600				215	1	0.462963	86	30	25.8621
TENM2	0	genome.wustl.edu	37	5	167674064	167674064	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	167674064	167674064	C	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	silent	c.6120	p.F2040	0.890	superfamily_ConA-like_lec_gl_sf	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				140	0	0	76	35	31.5315
RARS	0	genome.wustl.edu	37	5	167929052	167929052	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	167929052	167929052	A	G	SNP	RARS	ENST00000231572	human	ensembl	74_37	+1	known	silent	c.999	p.R333	0.962	pfam_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-ligase_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,pfam_Arg-tRNA-synth_N,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-ligase_Ia	-	no_errors	RARS	HGNC	ENSG00000113643				142	1	0.699301	67	26	27.957
GPRIN1	0	genome.wustl.edu	37	5	176025652	176025652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	176025652	176025652	G	A	SNP	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	missense	c.1184	p.T395M	0.000	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258				72	0	0	45	28	38.3562
RMND5B	0	genome.wustl.edu	37	5	177574760	177574760	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	177574760	177574760	T	C	SNP	RMND5B	ENST00000313386	human	ensembl	74_37	+1	known	missense	c.994	p.Y332H	1.000	NULL	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RMND5B	HGNC	ENSG00000145916				208	0	0	69	43	38.3929
TBC1D9B	0	genome.wustl.edu	37	5	179318408	179318408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	179318408	179318408	C	T	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.1015	p.A339T	0.005	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				110	0	0	49	22	30.9859
FLT4	0	genome.wustl.edu	37	5	180048658	180048658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	180048658	180048658	G	A	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.1904	p.T635M	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				46	0	0	30	12	28.5714
TRIM7	0	genome.wustl.edu	37	5	180622403	180622403	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	180622403	180622403	C	T	SNP	TRIM7	ENST00000274773	human	ensembl	74_37	-1	known	nonsense	c.1299	p.W433*	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM7	HGNC	ENSG00000146054				19	0	0	8	3	27.2727
CDH12	0	genome.wustl.edu	37	5	22078833	22078833	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	22078833	22078833	C	T	SNP	CDH12	ENST00000518209	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CDH12	HGNC	ENSG00000154162				50	0	0	43	17	28.3333
CDH10	0	genome.wustl.edu	37	5	24511519	24511519	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	24511519	24511519	G	A	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	nonsense	c.919	p.R307*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				147	0	0	66	45	40.5405
CDH9	0	genome.wustl.edu	37	5	26902626	26902626	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	26902626	26902626	C	A	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.1212	p.Q404H	0.997	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				137	0	0	41	21	33.871
IRX2	0	genome.wustl.edu	37	5	2749519	2749519	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	2749519	2749519	G	A	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	missense	c.632	p.T211M	0.995	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				71	0	0	33	20	37.7358
DROSHA	0	genome.wustl.edu	37	5	31526816	31526816	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	31526816	31526816	C	T	SNP	DROSHA	ENST00000344624	human	ensembl	74_37	-1	known	missense	c.224	p.R75Q	0.711	NULL	pfam_RNase_III_dom,pfam_dsRNA-bd_dom,superfamily_RNase_III_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DROSHA	HGNC	ENSG00000113360				43	0	0	9	3	25
OXCT1	0	genome.wustl.edu	37	5	41850186	41850186	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	41850186	41850186	C	T	SNP	OXCT1	ENST00000196371	human	ensembl	74_37	-1	known	silent	c.510	p.S170	0.371	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_A	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720				111	0	0	50	19	27.5362
OXCT1	0	genome.wustl.edu	37	5	41853524	41853524	+	Silent	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	41853524	41853524	T	A	SNP	OXCT1	ENST00000196371	human	ensembl	74_37	-1	known	silent	c.411	p.P137	0.634	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_A	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720				74	0	0	31	14	31.1111
AHRR	0	genome.wustl.edu	37	5	424011	424011	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	424011	424011	G	A	SNP	AHRR	ENST00000316418	human	ensembl	74_37	+1	known	silent	c.639	p.T213	0.000	NULL	pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHRR	HGNC	ENSG00000063438				100	0	0	31	11	26.1905
ADAMTS16	0	genome.wustl.edu	37	5	5306750	5306750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	5306750	5306750	G	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.3320	p.R1107H	0.117	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				85	0	0	36	14	28
DEPDC1B	0	genome.wustl.edu	37	5	59940657	59940657	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	59940657	59940657	G	A	SNP	DEPDC1B	ENST00000265036	human	ensembl	74_37	-1	known	silent	c.624	p.D208	0.110	pfscan_RhoGAP_dom	pfam_DEP_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom,pfscan_RhoGAP_dom	-	no_errors	DEPDC1B	HGNC	ENSG00000035499				58	0	0	15	15	50
CEP72	0	genome.wustl.edu	37	5	640665	640665	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	640665	640665	C	T	SNP	CEP72	ENST00000264935	human	ensembl	74_37	+1	known	silent	c.1485	p.H495	0.000	NULL	smart_Leu-rich_rpt_typical-subtyp,smart_U2A'_phosphoprotein32A_C	-	no_errors	CEP72	HGNC	ENSG00000112877				71	0	0	33	18	35.2941
ADAMTS6	0	genome.wustl.edu	37	5	64595832	64595832	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	64595832	64595832	G	A	SNP	ADAMTS6	ENST00000381055	human	ensembl	74_37	-1	known	silent	c.1350	p.D450	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192				90	0	0	38	16	29.6296
MARVELD2	0	genome.wustl.edu	37	5	68715652	68715652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	68715652	68715652	G	A	SNP	MARVELD2	ENST00000325631	human	ensembl	74_37	+1	known	missense	c.440	p.R147Q	0.154	NULL	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel	-	no_errors	MARVELD2	HGNC	ENSG00000152939				77	0	0	41	21	33.871
MAP1B	0	genome.wustl.edu	37	5	71490660	71490660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	71490660	71490660	G	A	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.1478	p.S493N	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				142	0	0	70	10	12.5
POC5	0	genome.wustl.edu	37	5	74981154	74981154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	74981154	74981154	C	T	SNP	POC5	ENST00000428202	human	ensembl	74_37	-1	known	missense	c.1285	p.A429T	0.000	NULL	NULL	-	no_errors	POC5	HGNC	ENSG00000152359				142	0	0	48	20	29.4118
CMYA5	0	genome.wustl.edu	37	5	79028654	79028654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	79028654	79028654	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.4066	p.A1356T	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				60	0	0	22	5	18.5185
HAPLN1	0	genome.wustl.edu	37	5	82940274	82940274	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	82940274	82940274	C	G	SNP	HAPLN1	ENST00000274341	human	ensembl	74_37	-1	known	missense	c.683	p.G228A	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN1	HGNC	ENSG00000145681				125	0	0	58	14	19.4444
TRIP13	0	genome.wustl.edu	37	5	896840	896840	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	896840	896840	C	A	SNP	TRIP13	ENST00000166345	human	ensembl	74_37	+1	known	missense	c.319	p.P107T	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_ClpA/B	-	no_errors	TRIP13	HGNC	ENSG00000071539				65	0	0	31	17	35.4167
GPR98	0	genome.wustl.edu	37	5	89979908	89979908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	89979908	89979908	C	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.6170	p.T2057I	0.108	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				102	0	0	45	16	26.2295
SEMA5A	0	genome.wustl.edu	37	5	9136646	9136646	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	9136646	9136646	C	T	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	silent	c.1569	p.T523	0.564	superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				51	0	0	27	10	27.027
CCNC	0	genome.wustl.edu	37	6	100009286	100009286	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	100009286	100009286	A	G	SNP	CCNC	ENST00000520429	human	ensembl	74_37	-1	known	missense	c.251	p.V84A	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_CyclinC	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_CyclinC	-	no_errors	CCNC	HGNC	ENSG00000112237				122	0	0	56	25	30.8642
SIM1	0	genome.wustl.edu	37	6	100896393	100896393	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	100896393	100896393	G	A	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	silent	c.705	p.R235	0.977	superfamily_PAS,smart_PAS,pfscan_PAS	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				56	0	0	17	4	19.0476
HACE1	0	genome.wustl.edu	37	6	105233031	105233031	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	105233031	105233031	G	T	SNP	HACE1	ENST00000262903	human	ensembl	74_37	-1	known	missense	c.1238	p.P413H	0.998	NULL	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382				100	1	0.990099	54	17	23.9437
SCML4	0	genome.wustl.edu	37	6	108067996	108067996	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	108067996	108067996	C	T	SNP	SCML4	ENST00000369021	human	ensembl	74_37	-1	known	silent	c.297	p.S99	0.004	pfam_DUF3588	pfam_DUF3588	-	no_errors	SCML4	HGNC	ENSG00000146285				140	0	0	62	30	32.6087
FOXO3	0	genome.wustl.edu	37	6	108985055	108985055	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	108985055	108985055	A	G	SNP	FOXO3	ENST00000343882	human	ensembl	74_37	+1	known	missense	c.1019	p.D340G	0.952	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO3	HGNC	ENSG00000118689				83	0	0	41	18	30.5085
ZNF259P1	0	genome.wustl.edu	37	6	109107806	109107806	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	109107806	109107806	T	C	SNP	ZNF259P1	ENST00000572422	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.331	-	-	-	no_errors	ZNF259P1	HGNC	ENSG00000219565				127	0	0	53	20	27.3973
AMD1	0	genome.wustl.edu	37	6	111213388	111213388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	111213388	111213388	G	A	SNP	AMD1	ENST00000368885	human	ensembl	74_37	+1	known	missense	c.452	p.R151H	1.000	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	-	no_errors	AMD1	HGNC	ENSG00000123505				288	0	0	118	54	31.3953
FAM162B	0	genome.wustl.edu	37	6	117086374	117086374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	117086374	117086374	C	T	SNP	FAM162B	ENST00000368557	human	ensembl	74_37	-1	known	missense	c.217	p.D73N	1.000	pfam_DUF1075	pfam_DUF1075	-	no_errors	FAM162B	HGNC	ENSG00000183807				96	0	0	43	11	20.3704
HIVEP1	0	genome.wustl.edu	37	6	12122840	12122840	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	12122840	12122840	A	G	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.2812	p.K938E	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				92	0	0	55	16	22.5352
NKAIN2	0	genome.wustl.edu	37	6	124676492	124676492	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	124676492	124676492	A	G	SNP	NKAIN2	ENST00000368417	human	ensembl	74_37	+1	known	missense	c.272	p.K91R	1.000	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN2	HGNC	ENSG00000188580				152	0	0	66	19	22.3529
SOGA3	0	genome.wustl.edu	37	6	127837736	127837736	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	127837736	127837736	G	A	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	silent	c.24	p.G8	1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				24	0	0	15	4	21.0526
TMEM244	0	genome.wustl.edu	37	6	130164743	130164743	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	130164743	130164743	T	C	SNP	TMEM244	ENST00000368143	human	ensembl	74_37	-1	known	missense	c.125	p.H42R	0.008	pfam_Integral_membrane_SYS1-rel	pfam_Integral_membrane_SYS1-rel	-	no_errors	TMEM244	HGNC	ENSG00000203756				203	0	0	51	25	32.8947
FOXQ1	0	genome.wustl.edu	37	6	1313402	1313402	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	1313402	1313402	T	C	SNP	FOXQ1	ENST00000296839	human	ensembl	74_37	+1	known	missense	c.463	p.F155L	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXQ1	HGNC	ENSG00000164379				112	0	0	24	7	22.5806
ALDH8A1	0	genome.wustl.edu	37	6	135239672	135239672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	135239672	135239672	G	A	SNP	ALDH8A1	ENST00000265605	human	ensembl	74_37	-1	known	missense	c.1345	p.L449F	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH8A1	HGNC	ENSG00000118514				82	0	0	30	14	31.8182
SLC35D3	0	genome.wustl.edu	37	6	137243721	137243721	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	137243721	137243721	C	T	SNP	SLC35D3	ENST00000331858	human	ensembl	74_37	+1	known	missense	c.155	p.A52V	0.997	NULL	pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35D3	HGNC	ENSG00000182747				47	0	0	13	7	35
FBXO30	0	genome.wustl.edu	37	6	146121412	146121412	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	146121412	146121412	T	C	SNP	FBXO30	ENST00000237281	human	ensembl	74_37	-1	known	missense	c.2068	p.N690D	0.998	superfamily_F-box_dom	pfam_F-box_dom,superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496				124	0	0	40	26	39.3939
GRM1	0	genome.wustl.edu	37	6	146720412	146720412	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	146720412	146720412	G	A	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.2237	p.C746Y	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				135	0	0	83	25	23.1481
CCDC170	0	genome.wustl.edu	37	6	151859310	151859310	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	151859310	151859310	A	G	SNP	CCDC170	ENST00000367290	human	ensembl	74_37	+1	known	missense	c.317	p.Q106R	0.988	NULL	superfamily_Prefoldin,superfamily_Smac_DIABLO-like	-	no_errors	CCDC170	HGNC	ENSG00000120262				110	0	0	35	15	30
RSPH3	0	genome.wustl.edu	37	6	159403612	159403612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	159403612	159403612	G	A	SNP	RSPH3	ENST00000252655	human	ensembl	74_37	-1	known	missense	c.1027	p.R343W	0.939	pfam_Radial_spoke_3	pfam_Radial_spoke_3	-	no_errors	RSPH3	HGNC	ENSG00000130363				64	0	0	25	18	41.8605
GMPR	0	genome.wustl.edu	37	6	16290717	16290717	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	16290717	16290717	T	C	SNP	GMPR	ENST00000259727	human	ensembl	74_37	+1	known	missense	c.722	p.L241P	1.000	pfam_IMP_DH_GMPRt,pirsf_GMP_reduct1,tigrfam_GMP_reduct1	pfam_IMP_DH_GMPRt,pirsf_GMP_reduct1,tigrfam_GMP_reduct1	-	no_errors	GMPR	HGNC	ENSG00000137198				396	0	0	157	72	31.441
FAM120B	0	genome.wustl.edu	37	6	170627293	170627293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	170627293	170627293	C	T	SNP	FAM120B	ENST00000537664	human	ensembl	74_37	+1	known	missense	c.884	p.S295L	0.408	NULL	NULL	-	no_errors	FAM120B	HGNC	ENSG00000112584				153	0	0	37	31	45.5882
KAAG1	0	genome.wustl.edu	37	6	24358032	24358032	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	24358032	24358032	G	A	SNP	KAAG1	ENST00000274766	human	ensembl	74_37	+1	known	silent	c.165	p.P55	0.009	NULL	NULL	-	no_errors	KAAG1	HGNC	ENSG00000146049				96	0	0	20	11	35.4839
LRRC16A	0	genome.wustl.edu	37	6	25600967	25600967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	25600967	25600967	C	T	SNP	LRRC16A	ENST00000329474	human	ensembl	74_37	+1	novel	missense	c.3545	p.A1182V	0.206	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691				27	0	0	11	4	26.6667
SLC17A3	0	genome.wustl.edu	37	6	25851024	25851024	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	25851024	25851024	G	T	SNP	SLC17A3	ENST00000397060	human	ensembl	74_37	-1	known	nonsense	c.794	p.S265*	0.224	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A3	HGNC	ENSG00000124564				82	0	0	40	17	29.8246
HIST1H1T	0	genome.wustl.edu	37	6	26108175	26108175	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	26108175	26108175	G	A	SNP	HIST1H1T	ENST00000338379	human	ensembl	74_37	-1	known	silent	c.147	p.T49	0.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1T	HGNC	ENSG00000187475				119	0	0	51	22	30.137
HIST1H2BC	0	genome.wustl.edu	37	6	26124113	26124113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	26124113	26124113	G	A	SNP	HIST1H2BC	ENST00000314332	human	ensembl	74_37	-1	known	missense	c.20	p.S7F	1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596				181	0	0	70	38	35.1852
HIST1H2AJ	0	genome.wustl.edu	37	6	27782430	27782430	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	27782430	27782430	C	A	SNP	HIST1H2AJ	ENST00000333151	human	ensembl	74_37	-1	known	missense	c.89	p.R30L	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AJ	HGNC	ENSG00000182611				70	0	0	20	14	41.1765
ZSCAN16	0	genome.wustl.edu	37	6	28097417	28097417	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	28097417	28097417	A	G	SNP	ZSCAN16	ENST00000340487	human	ensembl	74_37	+1	known	missense	c.736	p.S246G	0.870	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN16	HGNC	ENSG00000196812				115	0	0	37	23	38.3333
OR12D3	0	genome.wustl.edu	37	6	29342456	29342456	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	29342456	29342456	G	A	SNP	OR12D3	ENST00000396806	human	ensembl	74_37	-1	known	silent	c.609	p.S203	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR12D3	HGNC	ENSG00000112462				134	0	0	41	28	40.5797
OR12D3	0	genome.wustl.edu	37	6	29342488	29342488	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	29342488	29342488	T	C	SNP	OR12D3	ENST00000396806	human	ensembl	74_37	-1	known	missense	c.577	p.N193D	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR12D3	HGNC	ENSG00000112462				142	0	0	53	22	29.3333
GABBR1	0	genome.wustl.edu	37	6	29574229	29574229	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	29574229	29574229	A	G	SNP	GABBR1	ENST00000377034	human	ensembl	74_37	-1	known	silent	c.2250	p.I750	0.926	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Peripla_BP_I,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681				185	0	0	57	24	29.6296
HLA-F	0	genome.wustl.edu	37	6	29691261	29691261	+	Silent	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	29691261	29691261	C	G	SNP	HLA-F	ENST00000259951	human	ensembl	74_37	+1	known	silent	c.21	p.L7	0.006	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-F	HGNC	ENSG00000204642				117	0	0	32	11	25.5814
HLA-F	0	genome.wustl.edu	37	6	29692211	29692211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	29692211	29692211	C	T	SNP	HLA-F	ENST00000259951	human	ensembl	74_37	+1	known	missense	c.596	p.T199M	0.973	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-F	HGNC	ENSG00000204642				62	0	0	41	16	28.0702
HLA-E	0	genome.wustl.edu	37	6	30459139	30459139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	30459139	30459139	C	T	SNP	HLA-E	ENST00000376630	human	ensembl	74_37	+1	known	missense	c.836	p.T279M	0.998	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-E	HGNC	ENSG00000204592				149	0	0	53	33	38.3721
HCG27	0	genome.wustl.edu	37	6	31170660	31170660	+	RNA	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31170660	31170660	C	A	SNP	HCG27	ENST00000415276	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HCG27	HGNC	ENSG00000206344				123	0	0	42	22	34.375
HLA-C	0	genome.wustl.edu	37	6	31239468	31239468	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31239468	31239468	C	T	SNP	HLA-C	ENST00000383329	human	ensembl	74_37	-1	known	nonsense	c.251	p.W84*	0.878	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-C	HGNC	ENSG00000204525				122	0	0	35	17	32.6923
HLA-B	0	genome.wustl.edu	37	6	31323266	31323266	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31323266	31323266	C	T	SNP	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	nonsense	c.723	p.W241*	1.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-B	HGNC	ENSG00000234745				214	1	0.465116	82	38	31.6667
MICB	0	genome.wustl.edu	37	6	31474138	31474138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31474138	31474138	G	A	SNP	MICB	ENST00000252229	human	ensembl	74_37	+1	known	missense	c.544	p.A182T	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	MICB	HGNC	ENSG00000204516				84	0	0	25	20	44.4444
NEU1	0	genome.wustl.edu	37	6	31829063	31829063	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31829063	31829063	A	G	SNP	NEU1	ENST00000375631	human	ensembl	74_37	-1	known	missense	c.517	p.W173R	0.619	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU1	HGNC	ENSG00000204386				133	0	0	58	23	28.3951
SLC44A4	0	genome.wustl.edu	37	6	31831489	31831489	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31831489	31831489	C	A	SNP	SLC44A4	ENST00000229729	human	ensembl	74_37	-1	known	missense	c.2048	p.R683L	0.998	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A4	HGNC	ENSG00000204385				54	0	0	12	10	45.4545
TNXB	0	genome.wustl.edu	37	6	32015672	32015672	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	32015672	32015672	T	C	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.10157	p.Q3386R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				60	0	0	37	11	22.9167
TNXB	0	genome.wustl.edu	37	6	32036822	32036822	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	32036822	32036822	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.5679	p.T1893	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				96	0	0	46	18	28.125
FKBPL	0	genome.wustl.edu	37	6	32097454	32097454	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	32097454	32097454	A	C	SNP	FKBPL	ENST00000375156	human	ensembl	74_37	-1	known	missense	c.104	p.I35S	0.012	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FKBPL	HGNC	ENSG00000204315				78	0	0	32	11	25.5814
COL11A2	0	genome.wustl.edu	37	6	33132135	33132135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	33132135	33132135	C	T	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.4979	p.R1660H	0.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				54	0	0	15	5	25
SLC39A7	0	genome.wustl.edu	37	6	33170084	33170084	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	33170084	33170084	A	G	SNP	SLC39A7	ENST00000374675	human	ensembl	74_37	+1	known	missense	c.679	p.I227V	1.000	pfam_ZIP	pfam_ZIP,prints_Kininogen	-	no_errors	SLC39A7	HGNC	ENSG00000112473				137	0	0	75	26	25.7426
SCUBE3	0	genome.wustl.edu	37	6	35216468	35216468	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	35216468	35216468	A	G	SNP	SCUBE3	ENST00000394681	human	ensembl	74_37	+1	known	missense	c.3016	p.R1006G	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	SCUBE3	HGNC	ENSG00000146197				232	0	0	78	33	29.7297
BRPF3	0	genome.wustl.edu	37	6	36177640	36177640	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	36177640	36177640	T	C	SNP	BRPF3	ENST00000357641	human	ensembl	74_37	+1	known	missense	c.1814	p.L605P	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070				78	0	0	24	16	40
DNAH8	0	genome.wustl.edu	37	6	38897349	38897349	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	38897349	38897349	A	G	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.10530	p.R3510	0.992	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				140	0	0	73	17	18.8889
UNC5CL	0	genome.wustl.edu	37	6	41002503	41002503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	41002503	41002503	G	A	SNP	UNC5CL	ENST00000244565	human	ensembl	74_37	-1	known	missense	c.311	p.S104L	0.333	smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Death_domain,superfamily_DEATH-like_dom,smart_ZU5,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	UNC5CL	HGNC	ENSG00000124602				176	0	0	57	42	42.4242
FOXP4	0	genome.wustl.edu	37	6	41566656	41566656	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	41566656	41566656	G	A	SNP	FOXP4	ENST00000307972	human	ensembl	74_37	+1	known	silent	c.2025	p.P675	0.120	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP4	HGNC	ENSG00000137166				28	0	0	4	2	33.3333
TRERF1	0	genome.wustl.edu	37	6	42231247	42231247	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	42231247	42231247	C	T	SNP	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	silent	c.1695	p.P565	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496				91	0	0	40	14	25.9259
ABCC10	0	genome.wustl.edu	37	6	43401046	43401046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	43401046	43401046	G	A	SNP	ABCC10	ENST00000372530	human	ensembl	74_37	+1	known	missense	c.1328	p.R443H	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC10	HGNC	ENSG00000124574				53	0	0	26	7	21.2121
MEP1A	0	genome.wustl.edu	37	6	46797282	46797282	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	46797282	46797282	A	C	SNP	MEP1A	ENST00000230588	human	ensembl	74_37	+1	known	missense	c.1118	p.K373T	1.000	pirsf_Pept_M12A_Meprin,pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EG-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl_sf,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818				245	0	0	91	26	22.2222
GPR110	0	genome.wustl.edu	37	6	46976905	46976905	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	46976905	46976905	C	T	SNP	GPR110	ENST00000371253	human	ensembl	74_37	-1	known	missense	c.2266	p.A756T	0.724	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292				113	0	0	34	14	29.1667
PKHD1	0	genome.wustl.edu	37	6	51889477	51889477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	51889477	51889477	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.5131	p.A1711T	0.543	superfamily_Ig_E-set	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				104	0	0	38	17	30.9091
PKHD1	0	genome.wustl.edu	37	6	51934317	51934317	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	51934317	51934317	A	C	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.716	p.V239G	0.137	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				239	0	0	87	22	20.1835
HCRTR2	0	genome.wustl.edu	37	6	55128600	55128600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	55128600	55128600	C	T	SNP	HCRTR2	ENST00000370862	human	ensembl	74_37	+1	known	missense	c.742	p.R248C	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt	pfam_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	-	no_errors	HCRTR2	HGNC	ENSG00000137252				62	0	0	23	10	30.303
NRN1	0	genome.wustl.edu	37	6	6002702	6002702	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	6002702	6002702	C	T	SNP	NRN1	ENST00000244766	human	ensembl	74_37	-1	known	silent	c.84	p.A28	0.971	NULL	NULL	-	no_errors	NRN1	HGNC	ENSG00000124785				77	0	0	36	15	29.4118
KHDRBS2	0	genome.wustl.edu	37	6	62442601	62442601	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	62442601	62442601	C	T	SNP	KHDRBS2	ENST00000281156	human	ensembl	74_37	-1	known	silent	c.879	p.A293	0.457	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232				113	0	0	48	12	20
KHDRBS2	0	genome.wustl.edu	37	6	62757868	62757868	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	62757868	62757868	C	A	SNP	KHDRBS2	ENST00000281156	human	ensembl	74_37	-1	known	missense	c.251	p.R84I	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232				148	0	0	58	27	31.7647
EYS	0	genome.wustl.edu	37	6	66115078	66115078	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	66115078	66115078	T	C	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	missense	c.1045	p.K349E	0.000	smart_EG-like_dom	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107				88	0	0	61	11	15.2778
B3GAT2	0	genome.wustl.edu	37	6	71603915	71603915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	71603915	71603915	C	T	SNP	B3GAT2	ENST00000230053	human	ensembl	74_37	-1	known	missense	c.652	p.E218K	1.000	pfam_Glyco_trans_43	pfam_Glyco_trans_43	-	no_errors	B3GAT2	HGNC	ENSG00000112309				96	0	0	47	17	26.5625
B3GAT2	0	genome.wustl.edu	37	6	71603921	71603921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	71603921	71603921	G	A	SNP	B3GAT2	ENST00000230053	human	ensembl	74_37	-1	known	missense	c.646	p.R216C	0.993	pfam_Glyco_trans_43	pfam_Glyco_trans_43	-	no_errors	B3GAT2	HGNC	ENSG00000112309				92	0	0	43	18	29.5082
RREB1	0	genome.wustl.edu	37	6	7229265	7229265	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	7229265	7229265	C	T	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	silent	c.933	p.S311	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				51	0	0	20	8	28.5714
RIMS1	0	genome.wustl.edu	37	6	72892050	72892050	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	72892050	72892050	C	T	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	silent	c.876	p.R292	0.985	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				67	0	0	25	16	39.0244
OOEP-AS1	0	genome.wustl.edu	37	6	74079648	74079648	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	74079648	74079648	G	A	SNP	OOEP-AS1	ENST00000445350	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OOEP-AS1	HGNC	ENSG00000231332				17	0	0	10	5	33.3333
CD109	0	genome.wustl.edu	37	6	74476679	74476679	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	74476679	74476679	G	A	SNP	CD109	ENST00000287097	human	ensembl	74_37	+1	known	silent	c.1443	p.S481	1.000	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535				87	0	0	39	13	25
BMP6	0	genome.wustl.edu	37	6	7727469	7727469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	7727469	7727469	G	A	SNP	BMP6	ENST00000283147	human	ensembl	74_37	+1	known	missense	c.281	p.R94Q	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162				24	0	0	7	7	50
BMP6	0	genome.wustl.edu	37	6	7727519	7727519	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	7727519	7727519	G	C	SNP	BMP6	ENST00000283147	human	ensembl	74_37	+1	known	missense	c.331	p.E111Q	0.947	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162				26	0	0	7	4	36.3636
PHIP	0	genome.wustl.edu	37	6	79700597	79700597	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	79700597	79700597	G	T	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	silent	c.2307	p.P769	0.962	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247				87	0	0	28	8	22.2222
TTK	0	genome.wustl.edu	37	6	80724229	80724229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	80724229	80724229	G	A	SNP	TTK	ENST00000369798	human	ensembl	74_37	+1	known	missense	c.1034	p.S345N	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				87	0	0	57	30	34.4828
DOPEY1	0	genome.wustl.edu	37	6	83841932	83841932	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	83841932	83841932	G	T	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.2654	p.G885V	0.988	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				175	0	0	64	22	25.5814
ME1	0	genome.wustl.edu	37	6	83921763	83921763	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	83921763	83921763	C	T	SNP	ME1	ENST00000369705	human	ensembl	74_37	-1	known	silent	c.1599	p.P533	0.000	NULL	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME1	HGNC	ENSG00000065833				129	0	0	45	15	25
SNAP91	0	genome.wustl.edu	37	6	84368775	84368775	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	84368775	84368775	C	G	SNP	SNAP91	ENST00000369694	human	ensembl	74_37	-1	known	missense	c.489	p.K163N	1.000	pfam_ANTH_dom	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609				23	0	0	4	3	42.8571
SMIM8	0	genome.wustl.edu	37	6	88049878	88049878	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	88049878	88049878	C	T	SNP	SMIM8	ENST00000229570	human	ensembl	74_37	+1	known	silent	c.180	p.C60	0.532	NULL	NULL	-	no_errors	SMIM8	HGNC	ENSG00000111850				71	0	0	36	7	16.2791
MDN1	0	genome.wustl.edu	37	6	90428705	90428705	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	90428705	90428705	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.6102	p.P2034	0.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				103	0	0	36	19	34.5455
MANEA	0	genome.wustl.edu	37	6	96034417	96034417	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	96034417	96034417	T	C	SNP	MANEA	ENST00000358812	human	ensembl	74_37	+1	known	silent	c.102	p.A34	0.248	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	MANEA	HGNC	ENSG00000172469				106	1	0.934579	43	20	31.746
MEPCE	0	genome.wustl.edu	37	7	100028980	100028980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	100028980	100028980	G	A	SNP	MEPCE	ENST00000310512	human	ensembl	74_37	+1	known	missense	c.1339	p.V447I	1.000	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834				86	0	0	35	11	23.913
ZAN	0	genome.wustl.edu	37	7	100355909	100355909	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	100355909	100355909	T	C	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	missense	c.3394	p.C1132R	0.612	smart_VWC_out	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				73	0	0	27	10	27.027
MUC17	0	genome.wustl.edu	37	7	100675194	100675194	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	100675194	100675194	C	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.497	p.T166N	0.004	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				320	0	0	162	65	28.6344
MUC17	0	genome.wustl.edu	37	7	100680858	100680858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	100680858	100680858	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.6161	p.T2054M	0.002	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				306	0	0	182	79	30.2682
TRIM56	0	genome.wustl.edu	37	7	100731710	100731710	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	100731710	100731710	C	G	SNP	TRIM56	ENST00000306085	human	ensembl	74_37	+1	known	missense	c.1117	p.Q373E	0.957	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871				39	0	0	19	6	24
NAT16	0	genome.wustl.edu	37	7	100816741	100816741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	100816741	100816741	G	A	SNP	NAT16	ENST00000300303	human	ensembl	74_37	-1	known	missense	c.373	p.R125C	0.987	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT16	HGNC	ENSG00000167011				50	0	0	22	9	29.0323
LRRC17	0	genome.wustl.edu	37	7	102574474	102574474	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	102574474	102574474	C	T	SNP	LRRC17	ENST00000339431	human	ensembl	74_37	+1	known	silent	c.114	p.G38	0.001	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606				74	0	0	30	16	34.7826
RELN	0	genome.wustl.edu	37	7	103183268	103183268	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	103183268	103183268	C	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.6581	p.C2194Y	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				115	0	0	55	27	32.9268
BCAP29	0	genome.wustl.edu	37	7	107253787	107253787	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	107253787	107253787	G	T	SNP	BCAP29	ENST00000379119	human	ensembl	74_37	+1	known	missense	c.600	p.K200N	1.000	pfam_Bap31	pfam_Bap31	-	no_errors	BCAP29	HGNC	ENSG00000075790				72	0	0	31	13	29.5455
PNPLA8	0	genome.wustl.edu	37	7	108112874	108112874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	108112874	108112874	C	T	SNP	PNPLA8	ENST00000257694	human	ensembl	74_37	-1	known	missense	c.2320	p.E774K	1.000	NULL	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_ARM-type_fold	-	no_errors	PNPLA8	HGNC	ENSG00000135241				30	0	0	12	7	36.8421
DOCK4	0	genome.wustl.edu	37	7	111368509	111368509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	111368509	111368509	G	A	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	missense	c.5749	p.R1917W	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				95	0	0	27	14	34.1463
DOCK4	0	genome.wustl.edu	37	7	111409634	111409634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	111409634	111409634	C	T	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	missense	c.3779	p.R1260H	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				92	0	0	54	4	6.89655
THSD7A	0	genome.wustl.edu	37	7	11464332	11464332	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	11464332	11464332	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	missense	c.3374	p.R1125Q	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				281	0	0	93	52	35.8621
ASZ1	0	genome.wustl.edu	37	7	117067503	117067503	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	117067503	117067503	G	A	SNP	ASZ1	ENST00000284629	human	ensembl	74_37	-1	known	silent	c.12	p.S4	0.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ASZ1	HGNC	ENSG00000154438				124	0	0	39	36	48
PTPRZ1	0	genome.wustl.edu	37	7	121650445	121650445	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	121650445	121650445	A	C	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.1345	p.S449R	0.084	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				236	0	0	59	33	35.8696
TMEM106B	0	genome.wustl.edu	37	7	12263867	12263867	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	12263867	12263867	G	T	SNP	TMEM106B	ENST00000396667	human	ensembl	74_37	+1	known	missense	c.297	p.M99I	1.000	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106B	HGNC	ENSG00000106460				311	0	0	119	46	27.8788
SLC13A1	0	genome.wustl.edu	37	7	122809288	122809288	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	122809288	122809288	T	C	SNP	SLC13A1	ENST00000194130	human	ensembl	74_37	-1	known	missense	c.467	p.Q156R	1.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800				59	0	0	25	21	45.6522
SLC13A1	0	genome.wustl.edu	37	7	122839969	122839969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	122839969	122839969	C	T	SNP	SLC13A1	ENST00000194130	human	ensembl	74_37	-1	known	missense	c.32	p.R11H	0.990	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800				51	0	0	26	4	13.3333
UNCX	0	genome.wustl.edu	37	7	1273302	1273302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	1273302	1273302	C	T	SNP	UNCX	ENST00000316333	human	ensembl	74_37	+1	known	missense	c.421	p.R141C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	UNCX	HGNC	ENSG00000164853				118	0	0	37	8	17.7778
LRRC4	0	genome.wustl.edu	37	7	127670327	127670327	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	127670327	127670327	C	G	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.367	p.A123P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				122	0	0	41	18	30.5085
FLNC	0	genome.wustl.edu	37	7	128475415	128475415	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	128475415	128475415	A	G	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.388	p.I130V	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				195	0	0	47	30	38.961
ENSG00000242902	0	genome.wustl.edu	37	7	128493423	128493423	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	128493423	128493423	C	T	SNP	ENSG00000242902	ENST00000469965	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-309L24.2	Clone_based_vega_gene	ENSG00000242902				11	0	0	8	6	42.8571
SMO	0	genome.wustl.edu	37	7	128843389	128843389	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	128843389	128843389	T	C	SNP	SMO	ENST00000249373	human	ensembl	74_37	+1	known	missense	c.496	p.F166L	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602				29	0	0	7	5	41.6667
STRIP2	0	genome.wustl.edu	37	7	129091546	129091546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	129091546	129091546	C	T	SNP	STRIP2	ENST00000249344	human	ensembl	74_37	+1	known	missense	c.367	p.R123W	0.872	pfam_N1221	pfam_DUF3402,pfam_N1221	-	no_errors	STRIP2	HGNC	ENSG00000128578				70	0	0	22	14	38.8889
KLHDC10	0	genome.wustl.edu	37	7	129764312	129764312	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	129764312	129764312	T	C	SNP	KLHDC10	ENST00000335420	human	ensembl	74_37	+1	known	silent	c.801	p.H267	1.000	pfam_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	-	no_errors	KLHDC10	HGNC	ENSG00000128607				127	0	0	29	14	32.5581
EXOC4	0	genome.wustl.edu	37	7	133314872	133314872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	133314872	133314872	G	A	SNP	EXOC4	ENST00000253861	human	ensembl	74_37	+1	known	missense	c.1492	p.V498I	0.916	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558				98	0	0	49	20	28.9855
AKR1B10	0	genome.wustl.edu	37	7	134222385	134222385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	134222385	134222385	C	T	SNP	AKR1B10	ENST00000359579	human	ensembl	74_37	+1	known	missense	c.713	p.A238V	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B10	HGNC	ENSG00000198074				165	0	0	60	29	32.5843
NUP205	0	genome.wustl.edu	37	7	135269638	135269638	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	135269638	135269638	C	T	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	silent	c.1101	p.N367	0.999	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				59	0	0	23	8	25.8065
MIR490	0	genome.wustl.edu	37	7	136588087	136588087	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	136588087	136588087	T	C	SNP	MIR490	ENST00000608269	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	hsa-mir-490	miRBase	ENSG00000234352				54	0	0	22	12	35.2941
PTN	0	genome.wustl.edu	37	7	136938212	136938212	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	136938212	136938212	G	A	SNP	PTN	ENST00000348225	human	ensembl	74_37	-1	known	silent	c.288	p.G96	1.000	pfam_PTN/MK_C_dom,superfamily_PTN/MK_diS,smart_Midkine_heparin-bd_GF,prints_Midkine_heparin-bd_GF	pfam_PTN/MK_C_dom,pfam_PTN/MK_N_dom,superfamily_PTN/MK_diS,smart_Midkine_heparin-bd_GF,prints_Midkine_heparin-bd_GF	-	no_errors	PTN	HGNC	ENSG00000105894				137	0	0	66	6	8.33333
KIAA1549	0	genome.wustl.edu	37	7	138602550	138602550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	138602550	138602550	G	A	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.1822	p.R608C	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				17	0	0	11	3	21.4286
KLRG2	0	genome.wustl.edu	37	7	139168108	139168108	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	139168108	139168108	G	T	SNP	KLRG2	ENST00000340940	human	ensembl	74_37	-1	known	missense	c.281	p.P94Q	0.886	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRG2	HGNC	ENSG00000188883				12	0	0	6	5	45.4545
RAB19	0	genome.wustl.edu	37	7	140110830	140110830	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	140110830	140110830	A	C	SNP	RAB19	ENST00000275874	human	ensembl	74_37	+1	known	missense	c.259	p.K87Q	0.000	pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB19	HGNC	ENSG00000146955				312	0	0	82	41	33.3333
MGAM	0	genome.wustl.edu	37	7	141776043	141776043	+	Silent	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	141776043	141776043	T	G	SNP	MGAM	ENST00000475668	human	ensembl	74_37	+1	putative	silent	c.5316	p.S1772	0.058	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				88	0	0	9	24	72.7273
EPHB6	0	genome.wustl.edu	37	7	142561866	142561866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	142561866	142561866	C	T	SNP	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	missense	c.308	p.A103V	0.382	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				291	0	0	97	53	35.3333
EPHB6	0	genome.wustl.edu	37	7	142566026	142566026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	142566026	142566026	C	T	SNP	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	missense	c.1946	p.S649F	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				140	0	0	53	21	28.3784
OR6W1P	0	genome.wustl.edu	37	7	142759847	142759847	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	142759847	142759847	A	G	SNP	OR6W1P	ENST00000496192	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	OR6W1P	HGNC	ENSG00000179420				11	0	0	3	3	50
OR2F2	0	genome.wustl.edu	37	7	143633262	143633262	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	143633262	143633262	T	C	SNP	OR2F2	ENST00000408955	human	ensembl	74_37	+1	known	missense	c.937	p.S313P	0.012	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F2	HGNC	ENSG00000221910				71	0	0	23	11	32.3529
ARHGEF5	0	genome.wustl.edu	37	7	144068398	144068398	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	144068398	144068398	C	T	SNP	ARHGEF5	ENST00000056217	human	ensembl	74_37	+1	known	nonsense	c.3676	p.R1226*	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327				70	0	0	51	8	13.5593
LRRC61	0	genome.wustl.edu	37	7	150034532	150034532	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	150034532	150034532	C	T	SNP	LRRC61	ENST00000323078	human	ensembl	74_37	+1	known	silent	c.582	p.T194	0.000	NULL	pfam_Leu-rich_rpt	-	no_errors	LRRC61	HGNC	ENSG00000127399				35	0	0	13	10	43.4783
GIMAP8	0	genome.wustl.edu	37	7	150174600	150174600	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	150174600	150174600	A	T	SNP	GIMAP8	ENST00000307271	human	ensembl	74_37	+1	known	missense	c.1730	p.D577V	0.271	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP8	HGNC	ENSG00000171115				205	0	0	58	31	34.8315
ASB10	0	genome.wustl.edu	37	7	150883953	150883953	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	150883953	150883953	T	C	SNP	ASB10	ENST00000422024	human	ensembl	74_37	-1	known	missense	c.400	p.T134A	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB10	HGNC	ENSG00000146926				42	0	0	16	5	23.8095
ABCF2	0	genome.wustl.edu	37	7	150911168	150911168	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	150911168	150911168	T	G	SNP	ABCF2	ENST00000222388	human	ensembl	74_37	-1	known	missense	c.1844	p.Q615P	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050				70	0	0	26	18	40.9091
GALNT11	0	genome.wustl.edu	37	7	151810418	151810418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	151810418	151810418	G	A	SNP	GALNT11	ENST00000320311	human	ensembl	74_37	+1	known	missense	c.1168	p.E390K	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234				187	0	0	68	34	33.3333
KMT2C	0	genome.wustl.edu	37	7	152027709	152027709	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	152027709	152027709	A	G	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	silent	c.366	p.S122	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				143	0	0	91	5	5.20833
INTS1	0	genome.wustl.edu	37	7	1535865	1535865	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	1535865	1535865	G	A	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	silent	c.2022	p.A674	0.157	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				90	0	0	32	12	27.2727
SHH	0	genome.wustl.edu	37	7	155604760	155604760	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	155604760	155604760	G	A	SNP	SHH	ENST00000297261	human	ensembl	74_37	-1	known	silent	c.57	p.C19	1.000	pirsf_Hedgehog	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,prints_Hedgehog,pfscan_Intein_splice_site	-	no_errors	SHH	HGNC	ENSG00000164690				220	0	0	56	36	39.1304
ITGB8	0	genome.wustl.edu	37	7	20449502	20449502	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	20449502	20449502	A	G	SNP	ITGB8	ENST00000222573	human	ensembl	74_37	+1	known	missense	c.2192	p.K731R	1.000	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855				138	0	0	53	24	31.1688
DNAH11	0	genome.wustl.edu	37	7	21583118	21583118	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	21583118	21583118	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	silent	c.255	p.D85	0.043	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				16	0	0	6	4	40
NUDT1	0	genome.wustl.edu	37	7	2289590	2289590	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	2289590	2289590	A	G	SNP	NUDT1	ENST00000343985	human	ensembl	74_37	+1	known	missense	c.320	p.H107R	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_OxG-triPHTase	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_OxG-triPHTase,prints_Nudix_hydrolase	-	no_errors	NUDT1	HGNC	ENSG00000106268				161	0	0	50	25	33.3333
CHST12	0	genome.wustl.edu	37	7	2473447	2473447	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	2473447	2473447	G	A	SNP	CHST12	ENST00000258711	human	ensembl	74_37	+1	known	silent	c.1173	p.Q391	1.000	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	CHST12	HGNC	ENSG00000136213				114	0	0	35	15	30
GARS	0	genome.wustl.edu	37	7	30638425	30638425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	30638425	30638425	G	A	SNP	GARS	ENST00000389266	human	ensembl	74_37	+1	known	missense	c.236	p.R79Q	1.000	pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,prints_tRNA-synt_gly,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_tRNA-synt_gly	-	no_errors	GARS	HGNC	ENSG00000106105				82	0	0	22	14	38.8889
ELMO1	0	genome.wustl.edu	37	7	37298811	37298811	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	37298811	37298811	T	G	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.388	p.T130P	1.000	pfam_DUF3361,superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				62	0	0	21	12	36.3636
INHBA	0	genome.wustl.edu	37	7	41739849	41739849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	41739849	41739849	C	T	SNP	INHBA	ENST00000242208	human	ensembl	74_37	-1	known	missense	c.124	p.A42T	0.022	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641				569	0	0	184	73	28.4047
GLI3	0	genome.wustl.edu	37	7	42004496	42004496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	42004496	42004496	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.4175	p.S1392N	0.005	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				121	0	0	45	17	27.4194
C7orf25	0	genome.wustl.edu	37	7	42949407	42949407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	42949407	42949407	C	T	SNP	C7orf25	ENST00000431882	human	ensembl	74_37	-1	known	missense	c.1267	p.G423R	1.000	pfam_DUF1308	pfam_DUF1308	-	no_errors	C7orf25	HGNC	ENSG00000136197				94	0	0	45	25	35.7143
DBNL	0	genome.wustl.edu	37	7	44091460	44091460	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	44091460	44091460	C	T	SNP	DBNL	ENST00000468694	human	ensembl	74_37	+1	known	silent	c.171	p.L57	0.999	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Actin-bd_cofilin/tropomyosin,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DBNL	HGNC	ENSG00000136279				89	0	0	25	11	30.5556
NPC1L1	0	genome.wustl.edu	37	7	44579933	44579933	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	44579933	44579933	A	G	SNP	NPC1L1	ENST00000289547	human	ensembl	74_37	-1	known	silent	c.63	p.S21	0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520				88	0	0	18	6	25
CCM2	0	genome.wustl.edu	37	7	45115439	45115439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	45115439	45115439	G	A	SNP	CCM2	ENST00000381112	human	ensembl	74_37	+1	known	missense	c.1181	p.G394D	1.000	NULL	pfscan_PTB/PI_dom	-	no_errors	CCM2	HGNC	ENSG00000136280				72	0	0	39	11	22
ADCY1	0	genome.wustl.edu	37	7	45743274	45743274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	45743274	45743274	G	A	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	missense	c.2647	p.E883K	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				180	0	0	66	26	28.2609
SLC29A4	0	genome.wustl.edu	37	7	5336805	5336805	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	5336805	5336805	C	T	SNP	SLC29A4	ENST00000297195	human	ensembl	74_37	+1	known	silent	c.858	p.D286	1.000	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638				65	0	0	19	8	29.6296
FSCN1	0	genome.wustl.edu	37	7	5644943	5644943	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	5644943	5644943	G	A	SNP	FSCN1	ENST00000382361	human	ensembl	74_37	+1	known	silent	c.1320	p.A440	0.980	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN1	HGNC	ENSG00000075618				94	0	0	19	14	42.4242
AIMP2	0	genome.wustl.edu	37	7	6063222	6063222	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	6063222	6063222	T	G	SNP	AIMP2	ENST00000223029	human	ensembl	74_37	+1	known	missense	c.863	p.I288S	0.000	superfamily_Glutathione-S-Trfase_C-like	superfamily_Glutathione-S-Trfase_C-like	-	no_errors	AIMP2	HGNC	ENSG00000106305				78	0	0	28	15	34.8837
INTS4L1	0	genome.wustl.edu	37	7	64639757	64639757	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	64639757	64639757	A	G	SNP	INTS4L1	ENST00000587624	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	INTS4L1	HGNC	ENSG00000164669				43	0	0	31	4	11.4286
CRCP	0	genome.wustl.edu	37	7	65610438	65610438	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	65610438	65610438	A	G	SNP	CRCP	ENST00000395326	human	ensembl	74_37	+1	known	missense	c.248	p.K83R	1.000	pfam_RNA_pol_II_Rpb4,superfamily_HRDC-like,smart_RNA_pol_II_Rpb4_core	pfam_RNA_pol_II_Rpb4,superfamily_HRDC-like,smart_RNA_pol_II_Rpb4_core	-	no_errors	CRCP	HGNC	ENSG00000241258				212	0	0	77	29	27.3585
PMS2CL	0	genome.wustl.edu	37	7	6777215	6777215	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	6777215	6777215	C	T	SNP	PMS2CL	ENST00000486256	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PMS2CL	HGNC	ENSG00000187953				308	0	0	105	36	25.5319
ELN	0	genome.wustl.edu	37	7	73462849	73462849	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	73462849	73462849	A	G	SNP	ELN	ENST00000358929	human	ensembl	74_37	+1	known	silent	c.762	p.A254	0.514	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540				171	1	0.581395	82	29	26.1261
CLIP2	0	genome.wustl.edu	37	7	73790832	73790832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	73790832	73790832	C	T	SNP	CLIP2	ENST00000223398	human	ensembl	74_37	+1	known	missense	c.2101	p.R701W	0.934	superfamily_t-SNARE	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665				42	0	0	20	8	28.5714
PCLO	0	genome.wustl.edu	37	7	82476473	82476473	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	82476473	82476473	G	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.13745	p.A4582G	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				26	0	0	11	4	26.6667
ADAM22	0	genome.wustl.edu	37	7	87564383	87564383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	87564383	87564383	G	A	SNP	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	missense	c.128	p.R43H	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277				105	0	0	37	8	17.7778
PEX1	0	genome.wustl.edu	37	7	92146640	92146640	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	92146640	92146640	C	T	SNP	PEX1	ENST00000248633	human	ensembl	74_37	-1	known	missense	c.1189	p.A397T	0.682	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980				145	1	0.684932	80	29	26.6055
TAC1	0	genome.wustl.edu	37	7	97362035	97362035	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	97362035	97362035	C	T	SNP	TAC1	ENST00000319273	human	ensembl	74_37	+1	known	silent	c.111	p.S37	1.000	prints_Protachykinin	smart_Tachykinin,prints_Protachykinin	-	no_errors	TAC1	HGNC	ENSG00000006128				103	0	0	53	18	25.3521
ZSCAN25	0	genome.wustl.edu	37	7	99227411	99227411	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	99227411	99227411	G	A	SNP	ZSCAN25	ENST00000334715	human	ensembl	74_37	+1	known	missense	c.1403	p.S468N	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN25	HGNC	ENSG00000197037				94	0	0	24	19	44.186
NACAP1	0	genome.wustl.edu	37	8	102381673	102381673	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	102381673	102381673	T	C	SNP	NACAP1	ENST00000419462	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NACAP1	HGNC	ENSG00000228224				87	0	0	74	4	5.12821
SLC25A32	0	genome.wustl.edu	37	8	104413730	104413730	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	104413730	104413730	G	A	SNP	SLC25A32	ENST00000523701	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC25A32	HGNC	ENSG00000164933				166	0	0	91	24	20.8696
XKR6	0	genome.wustl.edu	37	8	10755763	10755763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	10755763	10755763	G	A	SNP	XKR6	ENST00000416569	human	ensembl	74_37	-1	known	missense	c.1625	p.T542M	1.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044				53	0	0	28	21	42.8571
SLC35G5	0	genome.wustl.edu	37	8	11188646	11188646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	11188646	11188646	C	T	SNP	SLC35G5	ENST00000382435	human	ensembl	74_37	+1	known	missense	c.31	p.P11S	0.863	NULL	pfam_DMT	-	no_errors	SLC35G5	HGNC	ENSG00000177710				105	0	0	47	16	25.3968
EXT1	0	genome.wustl.edu	37	8	118834730	118834730	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	118834730	118834730	T	A	SNP	EXT1	ENST00000378204	human	ensembl	74_37	-1	known	missense	c.1391	p.D464V	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197				90	0	0	74	13	14.9425
ENPP2	0	genome.wustl.edu	37	8	120608105	120608105	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	120608105	120608105	C	T	SNP	ENPP2	ENST00000259486	human	ensembl	74_37	-1	known	silent	c.1110	p.A370	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960				217	0	0	139	42	23.2044
TRMT12	0	genome.wustl.edu	37	8	125463342	125463342	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	125463342	125463342	G	A	SNP	TRMT12	ENST00000328599	human	ensembl	74_37	+1	known	silent	c.174	p.A58	0.977	NULL	pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TRMT12	HGNC	ENSG00000183665				68	0	0	38	8	17.3913
DLC1	0	genome.wustl.edu	37	8	12957167	12957167	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	12957167	12957167	G	T	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.2679	p.D893E	1.000	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				57	0	0	43	10	18.8679
ADCY8	0	genome.wustl.edu	37	8	132051844	132051844	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	132051844	132051844	C	T	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.736	p.G246S	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				55	0	0	41	11	21.1538
FAM135B	0	genome.wustl.edu	37	8	139153485	139153485	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	139153485	139153485	G	T	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.3746	p.P1249H	1.000	pfam_DUF676_lipase-like,pfam_PGAP1-like	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				95	0	0	45	19	29.6875
TRAPPC9	0	genome.wustl.edu	37	8	141461467	141461467	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	141461467	141461467	G	A	SNP	TRAPPC9	ENST00000389328	human	ensembl	74_37	-1	known	silent	c.300	p.S100	0.924	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632				56	0	0	38	9	19.1489
TSNARE1	0	genome.wustl.edu	37	8	143427223	143427223	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	143427223	143427223	A	G	SNP	TSNARE1	ENST00000307180	human	ensembl	74_37	-1	known	missense	c.119	p.I40T	0.690	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045				105	0	0	42	16	27.5862
CYP11B1	0	genome.wustl.edu	37	8	143958275	143958275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	143958275	143958275	G	A	SNP	CYP11B1	ENST00000292427	human	ensembl	74_37	-1	known	missense	c.622	p.R208W	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882				61	0	0	39	5	11.3636
NAPRT1	0	genome.wustl.edu	37	8	144658934	144658934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	144658934	144658934	C	T	SNP	NAPRT1	ENST00000276844	human	ensembl	74_37	-1	known	missense	c.763	p.A255T	0.951	superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB	-	no_errors	NAPRT1	HGNC	ENSG00000147813				21	0	0	14	3	17.6471
EEF1D	0	genome.wustl.edu	37	8	144672247	144672247	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	144672247	144672247	C	A	SNP	EEF1D	ENST00000423316	human	ensembl	74_37	-1	known	missense	c.5	p.R2M	1.000	NULL	pfam_Transl_elong_fac_EF1B_bsu/dsu,pfam_EF-1_beta_acid_region_euk,superfamily_Transl_elong_fac_EF1B_bsu/dsu,smart_Transl_elong_fac_EF1B_bsu/dsu	-	no_errors	EEF1D	HGNC	ENSG00000104529				75	0	0	26	4	13.3333
SCRIB	0	genome.wustl.edu	37	8	144874959	144874959	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	144874959	144874959	G	A	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.4096	p.R1366C	1.000	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				19	0	0	19	3	13.6364
SCRIB	0	genome.wustl.edu	37	8	144887175	144887175	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	144887175	144887175	C	T	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.2680	p.V894I	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				13	0	0	6	4	40
SCRIB	0	genome.wustl.edu	37	8	144892860	144892860	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	144892860	144892860	T	A	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.1400	p.K467M	0.995	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				312	0	0	186	50	21.1864
PLEC	0	genome.wustl.edu	37	8	144996946	144996946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	144996946	144996946	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.7562	p.R2521H	0.999	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				15	0	0	10	5	33.3333
PARP10	0	genome.wustl.edu	37	8	145058891	145058891	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	145058891	145058891	C	T	SNP	PARP10	ENST00000313028	human	ensembl	74_37	-1	known	missense	c.1279	p.A427T	0.003	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685				220	0	0	148	37	20
OPLAH	0	genome.wustl.edu	37	8	145112163	145112163	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	145112163	145112163	G	T	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	missense	c.1483	p.H495N	1.000	pfam_Hydantoinase_A	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				37	0	0	12	8	40
BOP1	0	genome.wustl.edu	37	8	145512821	145512821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	145512821	145512821	G	A	SNP	BOP1	ENST00000529231	human	ensembl	74_37	-1	putative	missense	c.47	p.T16M	0.001	NULL	NULL	-	no_errors	BOP1	HGNC	ENSG00000170727				155	0	0	77	19	19.7917
DGAT1	0	genome.wustl.edu	37	8	145540281	145540281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	145540281	145540281	G	A	SNP	DGAT1	ENST00000332324	human	ensembl	74_37	-1	known	missense	c.1403	p.A468V	0.996	pfam_MBOAT_fam	pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom	-	no_errors	DGAT1	HGNC	ENSG00000185000				24	0	0	14	5	26.3158
ARHGAP39	0	genome.wustl.edu	37	8	145806354	145806354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	145806354	145806354	C	T	SNP	ARHGAP39	ENST00000377307	human	ensembl	74_37	-1	known	missense	c.388	p.V130I	0.956	NULL	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_dom,smart_WW_dom,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799				14	0	0	13	3	18.75
DLGAP2	0	genome.wustl.edu	37	8	1514032	1514032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	1514032	1514032	G	A	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.1174	p.G392R	0.823	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010				29	0	0	20	5	20
ASAH1	0	genome.wustl.edu	37	8	17924735	17924735	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	17924735	17924735	G	T	SNP	ASAH1	ENST00000381733	human	ensembl	74_37	-1	known	missense	c.424	p.P142T	1.000	pirsf_Acid_ceramidase-like	pfam_Chologlycine_hydro,pirsf_Acid_ceramidase-like	-	no_errors	ASAH1	HGNC	ENSG00000104763				52	0	0	20	6	23.0769
PSD3	0	genome.wustl.edu	37	8	18662050	18662050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	18662050	18662050	G	A	SNP	PSD3	ENST00000440756	human	ensembl	74_37	-1	known	missense	c.1892	p.T631M	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	PSD3	HGNC	ENSG00000156011				62	0	0	56	20	26.3158
LPL	0	genome.wustl.edu	37	8	19811840	19811840	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	19811840	19811840	G	A	SNP	LPL	ENST00000311322	human	ensembl	74_37	+1	known	missense	c.751	p.V251M	0.009	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,tigrfam_Lipo_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipo_Lipase,prints_Lipase,pfscan_PLAT/LH2_dom,tigrfam_Lipo_Lipase	-	no_errors	LPL	HGNC	ENSG00000175445				125	0	0	69	17	19.7674
HR	0	genome.wustl.edu	37	8	21986118	21986118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	21986118	21986118	G	A	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	missense	c.566	p.S189F	0.002	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453				19	0	0	11	2	15.3846
REEP4	0	genome.wustl.edu	37	8	21996234	21996234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	21996234	21996234	C	T	SNP	REEP4	ENST00000306306	human	ensembl	74_37	-1	known	missense	c.626	p.R209Q	0.010	NULL	pfam_TB2_DP1_HVA22	-	no_errors	REEP4	HGNC	ENSG00000168476				165	0	0	72	26	26.5306
BMP1	0	genome.wustl.edu	37	8	22069141	22069141	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	22069141	22069141	T	G	SNP	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	missense	c.2861	p.V954G	1.000	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				171	0	0	91	30	24.7934
NEFL	0	genome.wustl.edu	37	8	24813205	24813205	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	24813205	24813205	G	A	SNP	NEFL	ENST00000221169	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.777	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725				48	0	0	33	8	19.5122
DOCK5	0	genome.wustl.edu	37	8	25267621	25267621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	25267621	25267621	C	T	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	missense	c.5411	p.P1804L	1.000	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				47	0	0	22	5	18.5185
EBF2	0	genome.wustl.edu	37	8	25897577	25897577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	25897577	25897577	C	T	SNP	EBF2	ENST00000520164	human	ensembl	74_37	-1	known	missense	c.449	p.C150Y	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF2	HGNC	ENSG00000221818				261	0	0	145	28	16.185
CSMD1	0	genome.wustl.edu	37	8	2813120	2813120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	2813120	2813120	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.9988	p.V3330M	0.979	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				76	0	0	45	15	25
FZD3	0	genome.wustl.edu	37	8	28378245	28378245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	28378245	28378245	C	T	SNP	FZD3	ENST00000240093	human	ensembl	74_37	+1	known	missense	c.280	p.R94C	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD3	HGNC	ENSG00000104290				293	1	0.340136	165	44	21.0526
WRN	0	genome.wustl.edu	37	8	30969140	30969140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	30969140	30969140	G	A	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	missense	c.2098	p.V700I	0.024	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				83	0	0	56	21	27.2727
UNC5D	0	genome.wustl.edu	37	8	35542123	35542123	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	35542123	35542123	A	T	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.775	p.T259S	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				166	0	0	80	20	20
AGPAT6	0	genome.wustl.edu	37	8	41469749	41469749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	41469749	41469749	C	T	SNP	AGPAT6	ENST00000396987	human	ensembl	74_37	+1	known	missense	c.752	p.P251L	0.999	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT6	HGNC	ENSG00000158669				125	0	0	79	22	21.7822
IKBKB	0	genome.wustl.edu	37	8	42178300	42178300	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	42178300	42178300	C	A	SNP	IKBKB	ENST00000520810	human	ensembl	74_37	+1	known	silent	c.1626	p.T542	0.001	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365				181	0	0	75	14	15.7303
RP1	0	genome.wustl.edu	37	8	55534032	55534032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	55534032	55534032	C	T	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.506	p.A169V	0.000	smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				233	0	0	96	26	21.3115
RP1	0	genome.wustl.edu	37	8	55539129	55539129	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	55539129	55539129	C	T	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.2687	p.A896V	0.758	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				76	0	0	45	14	23.7288
FAM110B	0	genome.wustl.edu	37	8	59059060	59059060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	59059060	59059060	C	T	SNP	FAM110B	ENST00000361488	human	ensembl	74_37	+1	known	missense	c.271	p.R91C	1.000	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122				53	0	0	29	14	32.5581
FAM110B	0	genome.wustl.edu	37	8	59059079	59059079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	59059079	59059079	C	T	SNP	FAM110B	ENST00000361488	human	ensembl	74_37	+1	known	missense	c.290	p.T97M	1.000	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122				47	0	0	31	12	27.907
CHD7	0	genome.wustl.edu	37	8	61777851	61777851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	61777851	61777851	G	A	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.8353	p.A2785T	0.993	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				21	0	0	21	6	22.2222
BHLHE22	0	genome.wustl.edu	37	8	65494007	65494007	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	65494007	65494007	T	C	SNP	BHLHE22	ENST00000321870	human	ensembl	74_37	+1	known	silent	c.660	p.G220	0.022	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE22	HGNC	ENSG00000180828				9	0	0	3	2	40
COPS5	0	genome.wustl.edu	37	8	67971573	67971573	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	67971573	67971573	T	A	SNP	COPS5	ENST00000357849	human	ensembl	74_37	-1	known	missense	c.251	p.K84M	1.000	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	COPS5	HGNC	ENSG00000121022				168	0	0	97	26	21.1382
CSPP1	0	genome.wustl.edu	37	8	67976722	67976722	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	67976722	67976722	G	A	SNP	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	missense	c.89	p.R30H	0.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				47	0	0	23	3	11.5385
PREX2	0	genome.wustl.edu	37	8	68989642	68989642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	68989642	68989642	G	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.1580	p.R527H	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				144	0	0	67	18	21.1765
PREX2	0	genome.wustl.edu	37	8	69012063	69012063	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	69012063	69012063	A	G	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.2700	p.I900M	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				82	0	0	65	18	21.6867
EYA1	0	genome.wustl.edu	37	8	72211944	72211944	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	72211944	72211944	T	C	SNP	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	missense	c.568	p.T190A	1.000	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				130	0	0	85	15	15
ZFHX4	0	genome.wustl.edu	37	8	77776234	77776234	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	77776234	77776234	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	silent	c.10284	p.F3428	0.978	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				53	0	0	36	12	25
ZFHX4	0	genome.wustl.edu	37	8	77776768	77776768	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	77776768	77776768	C	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.10818	p.F3606L	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				45	0	0	18	10	35.7143
CHMP4C	0	genome.wustl.edu	37	8	82670501	82670501	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	82670501	82670501	T	C	SNP	CHMP4C	ENST00000297265	human	ensembl	74_37	+1	known	missense	c.608	p.M203T	0.000	NULL	pfam_Snf7	-	no_errors	CHMP4C	HGNC	ENSG00000164695				84	0	0	48	19	28.3582
SLC7A13	0	genome.wustl.edu	37	8	87242090	87242090	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	87242090	87242090	C	A	SNP	SLC7A13	ENST00000297524	human	ensembl	74_37	-1	known	missense	c.417	p.L139F	0.460	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A13	HGNC	ENSG00000164893				98	0	0	67	22	24.7191
ENSG00000221137	0	genome.wustl.edu	37	8	87670121	87670121	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	87670121	87670121	C	T	SNP	ENSG00000221137	ENST00000408210	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.003	-	-	-	no_errors	AC013751.1	Clone_based_ensembl_gene	ENSG00000221137				64	0	0	40	11	21.5686
RUNX1T1	0	genome.wustl.edu	37	8	93003866	93003866	+	Splice_Site	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	93003866	93003866	C	T	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	splice_site	c.1024+1	e6+1	1.000	-	-	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				257	0	0	137	39	22.1591
GEM	0	genome.wustl.edu	37	8	95272705	95272705	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	95272705	95272705	G	T	SNP	GEM	ENST00000297596	human	ensembl	74_37	-1	known	silent	c.27	p.R9	1.000	pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	GEM	HGNC	ENSG00000164949				53	0	0	31	4	11.4286
NDUFAF6	0	genome.wustl.edu	37	8	96044275	96044275	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	96044275	96044275	C	T	SNP	NDUFAF6	ENST00000396124	human	ensembl	74_37	+1	known	nonsense	c.250	p.R84*	1.000	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth	-	no_errors	NDUFAF6	HGNC	ENSG00000156170				164	0	0	75	15	16.6667
GDF6	0	genome.wustl.edu	37	8	97157603	97157603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	97157603	97157603	C	T	SNP	GDF6	ENST00000287020	human	ensembl	74_37	-1	known	missense	c.556	p.V186M	0.689	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466				13	0	0	10	4	28.5714
TSPYL5	0	genome.wustl.edu	37	8	98289483	98289483	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	98289483	98289483	G	A	SNP	TSPYL5	ENST00000322128	human	ensembl	74_37	-1	known	missense	c.590	p.A197V	0.016	NULL	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543				169	0	0	97	43	30.7143
MTDH	0	genome.wustl.edu	37	8	98657012	98657012	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	98657012	98657012	C	T	SNP	MTDH	ENST00000336273	human	ensembl	74_37	+1	known	missense	c.278	p.A93V	0.016	NULL	NULL	-	no_errors	MTDH	HGNC	ENSG00000147649				20	0	0	9	8	47.0588
ABCA1	0	genome.wustl.edu	37	9	107546689	107546689	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	107546689	107546689	T	C	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	silent	c.6693	p.K2231	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				107	0	0	45	35	43.75
SVEP1	0	genome.wustl.edu	37	9	113243565	113243565	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	113243565	113243565	G	A	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	silent	c.2322	p.G774	0.000	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				29	0	0	17	3	15
SVEP1	0	genome.wustl.edu	37	9	113341676	113341676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	113341676	113341676	G	A	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.148	p.P50S	0.984	NULL	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				10	0	0	3	3	50
OR2K2	0	genome.wustl.edu	37	9	114090466	114090466	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	114090466	114090466	A	G	SNP	OR2K2	ENST00000374428	human	ensembl	74_37	-1	known	missense	c.335	p.V112A	0.607	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2K2	HGNC	ENSG00000171133				117	0	0	38	20	34.4828
KIAA1958	0	genome.wustl.edu	37	9	115421607	115421607	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	115421607	115421607	G	A	SNP	KIAA1958	ENST00000536272	human	ensembl	74_37	+1	known	missense	c.1493	p.G498D	1.000	NULL	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185				87	0	0	41	15	26.7857
KIAA1958	0	genome.wustl.edu	37	9	115421907	115421907	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	115421907	115421907	G	T	SNP	KIAA1958	ENST00000536272	human	ensembl	74_37	+1	known	missense	c.1793	p.R598L	1.000	pfam_DUF3504	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185				51	0	0	21	7	25
SLC46A2	0	genome.wustl.edu	37	9	115652493	115652493	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	115652493	115652493	T	C	SNP	SLC46A2	ENST00000374228	human	ensembl	74_37	-1	known	missense	c.469	p.M157V	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	SLC46A2	HGNC	ENSG00000119457				62	0	0	25	17	40.4762
ZNF618	0	genome.wustl.edu	37	9	116812464	116812464	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	116812464	116812464	A	G	SNP	ZNF618	ENST00000470105	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZNF618	HGNC	ENSG00000157657				167	1	0.595238	57	4	6.55738
COL27A1	0	genome.wustl.edu	37	9	117050984	117050984	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	117050984	117050984	C	T	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	silent	c.4047	p.G1349	0.992	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				43	0	0	23	8	25.8065
COL27A1	0	genome.wustl.edu	37	9	117071541	117071541	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	117071541	117071541	T	C	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.5219	p.V1740A	1.000	smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				330	0	0	92	46	33.3333
DFNB31	0	genome.wustl.edu	37	9	117266881	117266881	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	117266881	117266881	C	T	SNP	DFNB31	ENST00000362057	human	ensembl	74_37	-1	known	silent	c.201	p.A67	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397				52	0	0	14	3	17.6471
MEGF9	0	genome.wustl.edu	37	9	123367553	123367553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	123367553	123367553	G	A	SNP	MEGF9	ENST00000426959	human	ensembl	74_37	-1	known	missense	c.1835	p.S612L	1.000	NULL	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF9	HGNC	ENSG00000106780				202	1	0.492611	63	30	32.2581
PTGS1	0	genome.wustl.edu	37	9	125145862	125145862	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	125145862	125145862	G	A	SNP	PTGS1	ENST00000362012	human	ensembl	74_37	+1	known	silent	c.837	p.P279	0.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303				66	0	0	30	18	37.5
LHX2	0	genome.wustl.edu	37	9	126783458	126783458	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	126783458	126783458	C	T	SNP	LHX2	ENST00000373615	human	ensembl	74_37	+1	known	missense	c.808	p.R270C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX2	HGNC	ENSG00000106689				113	0	0	42	14	25
GAPVD1	0	genome.wustl.edu	37	9	128088865	128088865	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	128088865	128088865	G	A	SNP	GAPVD1	ENST00000394105	human	ensembl	74_37	+1	known	missense	c.2029	p.A677T	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219				154	0	0	61	33	35.1064
FAM129B	0	genome.wustl.edu	37	9	130289474	130289474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	130289474	130289474	G	A	SNP	FAM129B	ENST00000373312	human	ensembl	74_37	-1	known	missense	c.314	p.A105V	1.000	pfscan_Pleckstrin_homology	pfscan_Pleckstrin_homology	-	no_errors	FAM129B	HGNC	ENSG00000136830				111	0	0	31	25	44.6429
DOLPP1	0	genome.wustl.edu	37	9	131851261	131851261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	131851261	131851261	G	A	SNP	DOLPP1	ENST00000372546	human	ensembl	74_37	+1	known	missense	c.692	p.R231H	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	DOLPP1	HGNC	ENSG00000167130				81	0	0	21	14	40
ABL1	0	genome.wustl.edu	37	9	133760422	133760422	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	133760422	133760422	G	A	SNP	ABL1	ENST00000372348	human	ensembl	74_37	+1	known	silent	c.2802	p.S934	0.006	NULL	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007				47	0	0	21	3	12.5
PRRC2B	0	genome.wustl.edu	37	9	134354775	134354775	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	134354775	134354775	G	A	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.4895	p.S1632N	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				28	0	0	15	6	28.5714
UCK1	0	genome.wustl.edu	37	9	134401379	134401379	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	134401379	134401379	G	A	SNP	UCK1	ENST00000484876	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	UCK1	HGNC	ENSG00000130717				145	0	0	58	25	30.1205
CELP	0	genome.wustl.edu	37	9	135961693	135961693	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	135961693	135961693	C	T	SNP	CELP	ENST00000411440	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	CELP	HGNC	ENSG00000170827				35	0	0	14	2	12.5
RALGDS	0	genome.wustl.edu	37	9	135977154	135977154	+	RNA	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	135977154	135977154	G	T	SNP	RALGDS	ENST00000469972	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.438	-	-	-	no_errors	RALGDS	HGNC	ENSG00000160271				18	0	0	10	9	47.3684
DBH	0	genome.wustl.edu	37	9	136517397	136517397	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	136517397	136517397	G	A	SNP	DBH	ENST00000393056	human	ensembl	74_37	+1	known	silent	c.1365	p.S455	0.000	superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454				120	0	0	34	14	29.1667
PPP1R26	0	genome.wustl.edu	37	9	138376419	138376419	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	138376419	138376419	G	A	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	silent	c.63	p.P21	0.022	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				157	1	0.632911	54	23	29.8701
GLT6D1	0	genome.wustl.edu	37	9	138518015	138518015	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	138518015	138518015	C	G	SNP	GLT6D1	ENST00000371763	human	ensembl	74_37	-1	known	missense	c.157	p.A53P	0.987	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GLT6D1	HGNC	ENSG00000204007				150	0	0	60	12	16.6667
KCNT1	0	genome.wustl.edu	37	9	138670667	138670667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	138670667	138670667	C	T	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	missense	c.2728	p.R910W	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				76	0	0	24	13	35.1351
LHX3	0	genome.wustl.edu	37	9	139091567	139091567	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	139091567	139091567	G	A	SNP	LHX3	ENST00000371746	human	ensembl	74_37	-1	known	silent	c.426	p.S142	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX3	HGNC	ENSG00000107187				44	0	0	23	13	36.1111
NOTCH1	0	genome.wustl.edu	37	9	139391271	139391271	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	139391271	139391271	T	C	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	missense	c.6920	p.Q2307R	1.000	pirsf_Notch,prints_Notch_1	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				102	0	0	49	17	25.7576
TOR4A	0	genome.wustl.edu	37	9	140174064	140174064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	140174064	140174064	C	T	SNP	TOR4A	ENST00000357503	human	ensembl	74_37	+1	known	missense	c.923	p.T308M	0.994	smart_AAA+_ATPase	pfam_Torsin,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	TOR4A	HGNC	ENSG00000198113				15	0	0	9	5	35.7143
PNPLA7	0	genome.wustl.edu	37	9	140355145	140355145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	140355145	140355145	C	T	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.3886	p.V1296I	0.001	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				85	0	0	30	16	34.7826
CBWD1	0	genome.wustl.edu	37	9	164038	164038	+	Splice_Site	SNP	C	C	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	164038	164038	C	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	splice_site	c.431-1	e5-1	1.000	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785				267	0	0	118	9	7.08661
FOCAD	0	genome.wustl.edu	37	9	20988333	20988333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	20988333	20988333	G	A	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	missense	c.4909	p.V1637I	0.994	pfam_DUF3028	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				96	0	0	24	14	36.8421
PTENP1	0	genome.wustl.edu	37	9	33675379	33675379	+	RNA	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	33675379	33675379	C	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				25	0	0	38	4	9.52381
UBAP1	0	genome.wustl.edu	37	9	34242049	34242049	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	34242049	34242049	C	A	SNP	UBAP1	ENST00000545103	human	ensembl	74_37	+1	known	silent	c.1218	p.S406	0.986	NULL	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP1	HGNC	ENSG00000165006				168	0	0	59	23	28.0488
ENHO	0	genome.wustl.edu	37	9	34521676	34521676	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	34521676	34521676	G	T	SNP	ENHO	ENST00000399775	human	ensembl	74_37	-1	known	silent	c.18	p.S6	1.000	NULL	NULL	-	no_errors	ENHO	HGNC	ENSG00000168913				44	0	0	18	5	21.7391
RUSC2	0	genome.wustl.edu	37	9	35560416	35560416	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	35560416	35560416	C	T	SNP	RUSC2	ENST00000361226	human	ensembl	74_37	+1	known	missense	c.3779	p.A1260V	0.013	NULL	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853				94	0	0	32	18	36
TMEM8B	0	genome.wustl.edu	37	9	35846207	35846207	+	RNA	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	35846207	35846207	G	T	SNP	TMEM8B	ENST00000490199	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMEM8B	HGNC	ENSG00000137103				103	0	0	38	21	35.5932
PAX5	0	genome.wustl.edu	37	9	36846850	36846850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	36846850	36846850	C	T	SNP	PAX5	ENST00000523241	human	ensembl	74_37	-1	novel	missense	c.857	p.R286Q	0.908	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX5	HGNC	ENSG00000196092				70	0	0	16	5	23.8095
FBXO10	0	genome.wustl.edu	37	9	37541216	37541216	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	37541216	37541216	A	C	SNP	FBXO10	ENST00000432825	human	ensembl	74_37	-1	known	missense	c.550	p.F184V	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,pfscan_F-box_dom,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO10	HGNC	ENSG00000147912				159	0	0	63	33	34.375
SPATA31A6	0	genome.wustl.edu	37	9	43626531	43626531	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	43626531	43626531	C	A	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.2156	p.R719M	0.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				39	0	0	35	8	18.6047
SLC1A1	0	genome.wustl.edu	37	9	4561477	4561477	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	4561477	4561477	C	T	SNP	SLC1A1	ENST00000262352	human	ensembl	74_37	+1	known	silent	c.261	p.S87	0.989	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A1	HGNC	ENSG00000106688				358	0	0	127	53	29.4444
PGM5	0	genome.wustl.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	70993145	70993145	A	G	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.292	p.I98V	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				93	0	0	66	12	15.3846
APBA1	0	genome.wustl.edu	37	9	72131694	72131694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	72131694	72131694	C	T	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	missense	c.433	p.A145T	0.078	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				40	0	0	11	11	50
KANK1	0	genome.wustl.edu	37	9	744580	744580	+	Silent	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	744580	744580	C	A	SNP	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	silent	c.3987	p.A1329	1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104				129	0	0	39	11	22
ALDH1A1	0	genome.wustl.edu	37	9	75526891	75526891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	75526891	75526891	G	A	SNP	ALDH1A1	ENST00000297785	human	ensembl	74_37	-1	known	missense	c.1183	p.R395C	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092				163	0	0	47	30	38.961
FOXB2	0	genome.wustl.edu	37	9	79635623	79635623	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	79635623	79635623	G	A	SNP	FOXB2	ENST00000376708	human	ensembl	74_37	+1	known	silent	c.1053	p.L351	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head,prints_Antifreeze_1	-	no_errors	FOXB2	HGNC	ENSG00000204612				18	0	0	10	4	28.5714
VPS13A	0	genome.wustl.edu	37	9	79836274	79836274	+	Splice_Site	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	79836274	79836274	T	C	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	splice_site	c.1161+2	e13+2	1.000	-	-	-	no_errors	VPS13A	HGNC	ENSG00000197969				85	0	0	31	7	18.4211
AGTPBP1	0	genome.wustl.edu	37	9	88272486	88272486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	88272486	88272486	C	T	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	missense	c.929	p.R310H	1.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049				53	0	0	24	3	11.1111
DAPK1	0	genome.wustl.edu	37	9	90313686	90313686	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	90313686	90313686	G	A	SNP	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	silent	c.2727	p.S909	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				85	0	0	38	22	36.6667
S1PR3	0	genome.wustl.edu	37	9	91617139	91617139	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	91617139	91617139	A	G	SNP	S1PR3	ENST00000358157	human	ensembl	74_37	+1	known	missense	c.1024	p.S342G	1.000	prints_EDG1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_EDG3_rcpt,prints_S1P_rcpt,prints_GPCR_Rhodpsn,prints_EDG1_rcpt,prints_Cnbnoid_rcpt	-	no_errors	S1PR3	HGNC	ENSG00000213694				73	0	0	30	10	25
SHC3	0	genome.wustl.edu	37	9	91661763	91661763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	91661763	91661763	G	A	SNP	SHC3	ENST00000375835	human	ensembl	74_37	-1	known	missense	c.1109	p.A370V	0.039	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC3	HGNC	ENSG00000148082				119	0	0	31	21	40.3846
SEMA4D	0	genome.wustl.edu	37	9	92017805	92017805	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	92017805	92017805	A	G	SNP	SEMA4D	ENST00000356444	human	ensembl	74_37	-1	known	missense	c.233	p.I78T	0.775	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764				85	0	0	41	17	29.3103
SYK	0	genome.wustl.edu	37	9	93624564	93624564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	93624564	93624564	G	A	SNP	SYK	ENST00000375746	human	ensembl	74_37	+1	known	missense	c.655	p.D219N	0.997	pfam_SH2,smart_SH2,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025				56	0	0	20	7	25.9259
ENSG00000226668	0	genome.wustl.edu	37	9	95646207	95646207	+	RNA	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	95646207	95646207	G	A	SNP	ENSG00000226668	ENST00000411450	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	RP11-526D8.7	Clone_based_vega_gene	ENSG00000226668				90	0	0	34	14	29.1667
XKRX	0	genome.wustl.edu	37	X	100169733	100169733	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	100169733	100169733	A	G	SNP	XKRX	ENST00000328526	human	ensembl	74_37	-1	known	missense	c.983	p.V328A	0.991	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKRX	HGNC	ENSG00000182489				290	0	0	115	50	30.303
BTK	0	genome.wustl.edu	37	X	100613619	100613619	+	Silent	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	100613619	100613619	A	G	SNP	BTK	ENST00000308731	human	ensembl	74_37	-1	known	silent	c.960	p.F320	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671				447	0	0	157	72	31.441
NXF4	0	genome.wustl.edu	37	X	101818963	101818963	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	101818963	101818963	C	T	SNP	NXF4	ENST00000360035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	NXF4	HGNC	ENSG00000196970				54	0	0	27	8	22.8571
BHLHB9	0	genome.wustl.edu	37	X	102005119	102005119	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	102005119	102005119	G	A	SNP	BHLHB9	ENST00000361229	human	ensembl	74_37	+1	known	missense	c.1196	p.R399H	0.015	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908				141	0	0	61	28	31.4607
PLP1	0	genome.wustl.edu	37	X	103041757	103041757	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	103041757	103041757	C	T	SNP	PLP1	ENST00000465975	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.840	-	-	-	no_errors	PLP1	HGNC	ENSG00000123560				71	0	0	39	11	22
NRK	0	genome.wustl.edu	37	X	105197095	105197095	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	105197095	105197095	G	T	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	missense	c.4586	p.R1529M	0.024	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				33	0	0	12	4	25
TEX13B	0	genome.wustl.edu	37	X	107224610	107224610	+	Silent	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	107224610	107224610	G	T	SNP	TEX13B	ENST00000302917	human	ensembl	74_37	-1	known	silent	c.639	p.V213	0.000	NULL	NULL	-	no_errors	TEX13B	HGNC	ENSG00000170925				460	1	0.21692	132	58	30.5263
PLS3	0	genome.wustl.edu	37	X	114869331	114869331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	114869331	114869331	G	A	SNP	PLS3	ENST00000355899	human	ensembl	74_37	+1	known	missense	c.721	p.A241T	1.000	superfamily_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_dom,smart_CH-domain,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	PLS3	HGNC	ENSG00000102024				254	0	0	117	39	25
MIR1277	0	genome.wustl.edu	37	X	117520421	117520421	+	RNA	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	117520421	117520421	T	A	SNP	MIR1277	ENST00000408536	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR1277	HGNC	ENSG00000221463				70	0	0	21	19	47.5
NKAP	0	genome.wustl.edu	37	X	119068456	119068456	+	Splice_Site	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	119068456	119068456	C	T	SNP	NKAP	ENST00000371410	human	ensembl	74_37	-1	known	splice_site	c.737+1	e5+1	0.672	-	-	-	no_errors	NKAP	HGNC	ENSG00000101882				132	0	0	36	17	32.0755
TMEM255A	0	genome.wustl.edu	37	X	119438315	119438315	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	119438315	119438315	G	C	SNP	TMEM255A	ENST00000309720	human	ensembl	74_37	-1	known	missense	c.90	p.I30M	1.000	NULL	NULL	-	no_errors	TMEM255A	HGNC	ENSG00000125355				244	0	0	83	40	32.5203
TMEM255A	0	genome.wustl.edu	37	X	119445132	119445132	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	119445132	119445132	G	A	SNP	TMEM255A	ENST00000309720	human	ensembl	74_37	-1	known	silent	c.33	p.S11	1.000	NULL	NULL	-	no_errors	TMEM255A	HGNC	ENSG00000125355				13	0	0	2	3	60
GRIA3	0	genome.wustl.edu	37	X	122319770	122319770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	122319770	122319770	G	A	SNP	GRIA3	ENST00000264357	human	ensembl	74_37	+1	known	missense	c.196	p.E66K	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675				76	0	0	45	21	31.8182
THOC2	0	genome.wustl.edu	37	X	122765540	122765540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	122765540	122765540	G	A	SNP	THOC2	ENST00000245838	human	ensembl	74_37	-1	known	missense	c.2480	p.S827L	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676				412	0	0	174	57	24.6753
DCAF12L2	0	genome.wustl.edu	37	X	125298904	125298904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	125298904	125298904	C	T	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	missense	c.1004	p.R335H	0.978	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354				227	0	0	98	14	12.5
ZDHHC9	0	genome.wustl.edu	37	X	128963037	128963037	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	128963037	128963037	A	G	SNP	ZDHHC9	ENST00000357166	human	ensembl	74_37	-1	known	missense	c.248	p.L83P	0.993	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC9	HGNC	ENSG00000188706				162	0	0	69	46	40
ENSG00000229702	0	genome.wustl.edu	37	X	129629114	129629114	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	129629114	129629114	C	T	SNP	ENSG00000229702	ENST00000458525	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP1-274L7.1	Clone_based_vega_gene	ENSG00000229702				47	0	0	19	17	47.2222
TFDP3	0	genome.wustl.edu	37	X	132351559	132351559	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	132351559	132351559	G	A	SNP	TFDP3	ENST00000310125	human	ensembl	74_37	-1	known	silent	c.729	p.S243	0.997	pfam_Transc_factor_DP_C,pirsf_Transcrpt_fac_DP	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcrpt_fac_DP	-	no_errors	TFDP3	HGNC	ENSG00000183434				268	0	0	97	44	31.2057
GPC4	0	genome.wustl.edu	37	X	132438841	132438841	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	132438841	132438841	A	G	SNP	GPC4	ENST00000370828	human	ensembl	74_37	-1	known	missense	c.1204	p.S402P	0.992	pfam_Glypican	pfam_Glypican	-	no_errors	GPC4	HGNC	ENSG00000076716				209	0	0	107	29	21.3235
GPC4	0	genome.wustl.edu	37	X	132439828	132439828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	132439828	132439828	G	A	SNP	GPC4	ENST00000370828	human	ensembl	74_37	-1	known	missense	c.1127	p.T376I	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC4	HGNC	ENSG00000076716				529	0	0	169	54	24.2152
MAP7D3	0	genome.wustl.edu	37	X	135307005	135307005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	135307005	135307005	G	A	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	missense	c.2120	p.T707I	0.404	pfam_MAP7	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				49	0	0	21	5	19.2308
ZIC3	0	genome.wustl.edu	37	X	136651098	136651098	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	136651098	136651098	C	T	SNP	ZIC3	ENST00000287538	human	ensembl	74_37	+1	known	silent	c.1098	p.D366	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925				508	0	0	147	82	35.8079
FGF13	0	genome.wustl.edu	37	X	137939797	137939797	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	137939797	137939797	G	A	SNP	FGF13	ENST00000370603	human	ensembl	74_37	-1	known	nonsense	c.94	p.R32*	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF13	HGNC	ENSG00000129682				104	0	0	40	20	33.3333
SPANXC	0	genome.wustl.edu	37	X	140336519	140336519	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	140336519	140336519	C	T	SNP	SPANXC	ENST00000358993	human	ensembl	74_37	-1	known	silent	c.72	p.T24	0.004	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXC	HGNC	ENSG00000198573				133	0	0	36	37	50.6849
GEMIN8	0	genome.wustl.edu	37	X	14038456	14038456	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	14038456	14038456	C	T	SNP	GEMIN8	ENST00000380523	human	ensembl	74_37	-1	known	silent	c.213	p.A71	0.000	NULL	NULL	-	no_errors	GEMIN8	HGNC	ENSG00000046647				219	1	0.454545	114	59	34.104
CSF2RA	0	genome.wustl.edu	37	X	1407832	1407832	+	RNA	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	1407832	1407832	A	G	SNP	CSF2RA	ENST00000478256	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.018	-	-	-	no_errors	CSF2RA	HGNC	ENSG00000198223				130	0	0	51	30	37.037
MAGEC3	0	genome.wustl.edu	37	X	140985151	140985151	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	140985151	140985151	G	T	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	missense	c.1607	p.S536I	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509				284	0	0	117	64	35.3591
MAGEC2	0	genome.wustl.edu	37	X	141291102	141291102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	141291102	141291102	C	T	SNP	MAGEC2	ENST00000247452	human	ensembl	74_37	-1	known	missense	c.672	p.M224I	0.001	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774				251	0	0	152	11	6.74847
CXorf40A	0	genome.wustl.edu	37	X	148627251	148627251	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	148627251	148627251	G	A	SNP	CXorf40A	ENST00000359293	human	ensembl	74_37	+1	known	silent	c.75	p.T25	0.545	superfamily_PUA-like_domain	superfamily_PUA-like_domain	-	no_errors	CXorf40A	HGNC	ENSG00000197620				108	0	0	34	23	40.3509
MTM1	0	genome.wustl.edu	37	X	149814219	149814219	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	149814219	149814219	G	A	SNP	MTM1	ENST00000370396	human	ensembl	74_37	+1	known	missense	c.742	p.G248S	1.000	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100				199	0	0	95	37	28.0303
MTMR1	0	genome.wustl.edu	37	X	149931081	149931081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	149931081	149931081	C	T	SNP	MTMR1	ENST00000445323	human	ensembl	74_37	+1	known	missense	c.1901	p.A634V	0.136	NULL	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR1	HGNC	ENSG00000063601				191	0	0	54	21	28
GPR50	0	genome.wustl.edu	37	X	150348872	150348872	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	150348872	150348872	A	C	SNP	GPR50	ENST00000218316	human	ensembl	74_37	+1	known	missense	c.817	p.N273H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mel_rcpt_1X,prints_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195				234	0	0	108	34	23.9437
ENSG00000214915	0	genome.wustl.edu	37	X	150684103	150684103	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	150684103	150684103	C	T	SNP	ENSG00000214915	ENST00000454307	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XX-FW80269A6.1	Clone_based_vega_gene	ENSG00000214915				30	0	0	4	4	50
GABRA3	0	genome.wustl.edu	37	X	151532939	151532939	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	151532939	151532939	T	C	SNP	GABRA3	ENST00000370314	human	ensembl	74_37	-1	known	missense	c.104	p.Q35R	1.000	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677				375	0	0	137	64	31.8408
ATP2B3	0	genome.wustl.edu	37	X	152807798	152807798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	152807798	152807798	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.682	p.D228N	0.997	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				106	0	0	30	15	33.3333
IDH3G	0	genome.wustl.edu	37	X	153052285	153052285	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	153052285	153052285	A	G	SNP	IDH3G	ENST00000217901	human	ensembl	74_37	-1	known	missense	c.895	p.Y299H	1.000	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3G	HGNC	ENSG00000067829				220	0	0	67	37	35.5769
SSR4	0	genome.wustl.edu	37	X	153063670	153063670	+	RNA	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	153063670	153063670	T	C	SNP	SSR4	ENST00000460616	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SSR4	HGNC	ENSG00000180879				119	0	0	45	17	27.4194
MECP2	0	genome.wustl.edu	37	X	153363100	153363100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	153363100	153363100	G	A	SNP	MECP2	ENST00000453960	human	ensembl	74_37	-1	novel	missense	c.23	p.A8V	1.000	pirsf_Me_CpG-bd_MeCP2	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057				20	0	0	2	3	60
TKTL1	0	genome.wustl.edu	37	X	153549180	153549180	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	153549180	153549180	G	A	SNP	TKTL1	ENST00000369915	human	ensembl	74_37	+1	known	missense	c.1106	p.R369Q	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350				298	0	0	107	38	26.2069
RPL10	0	genome.wustl.edu	37	X	153626868	153626868	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	153626868	153626868	G	A	SNP	RPL10	ENST00000344746	human	ensembl	74_37	+1	known	missense	c.8	p.R3H	1.000	pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10	HGNC	ENSG00000147403				610	0	0	174	69	28.3951
SLC10A3	0	genome.wustl.edu	37	X	153716404	153716404	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	153716404	153716404	C	T	SNP	SLC10A3	ENST00000263512	human	ensembl	74_37	-1	known	silent	c.876	p.T292	0.307	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903				148	0	0	56	21	27.2727
SLC10A3	0	genome.wustl.edu	37	X	153716482	153716482	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	153716482	153716482	G	A	SNP	SLC10A3	ENST00000263512	human	ensembl	74_37	-1	known	silent	c.798	p.G266	0.702	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903				156	1	0.636943	44	36	45
CTAG2	0	genome.wustl.edu	37	X	153880696	153880696	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	153880696	153880696	G	A	SNP	CTAG2	ENST00000247306	human	ensembl	74_37	-1	putative	missense	c.479	p.P160L	0.000	NULL	pfam_EKC/KEOPS_Pcc1	-	no_errors	CTAG2	HGNC	ENSG00000126890				158	0	0	74	30	28.8462
CTAG2	0	genome.wustl.edu	37	X	153880812	153880812	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	153880812	153880812	C	T	SNP	CTAG2	ENST00000369585	human	ensembl	74_37	-1	known	silent	c.363	p.A121	0.000	pfam_EKC/KEOPS_Pcc1	pfam_EKC/KEOPS_Pcc1	-	no_errors	CTAG2	HGNC	ENSG00000126890				151	0	0	54	20	27.027
GAB3	0	genome.wustl.edu	37	X	153944591	153944591	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	153944591	153944591	C	T	SNP	GAB3	ENST00000424127	human	ensembl	74_37	-1	known	missense	c.86	p.R29H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219				89	0	0	51	17	25
MPP1	0	genome.wustl.edu	37	X	154020565	154020565	+	RNA	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	154020565	154020565	C	A	SNP	MPP1	ENST00000488694	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MPP1	HGNC	ENSG00000130830				105	0	0	26	18	40.9091
ACE2	0	genome.wustl.edu	37	X	15584543	15584543	+	RNA	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	15584543	15584543	C	A	SNP	ACE2	ENST00000473851	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACE2	HGNC	ENSG00000130234				334	0	0	78	47	37.6
TXLNG	0	genome.wustl.edu	37	X	16838317	16838317	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	16838317	16838317	T	G	SNP	TXLNG	ENST00000380122	human	ensembl	74_37	+1	known	missense	c.437	p.L146R	1.000	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNG	HGNC	ENSG00000086712				337	0	0	98	38	27.9412
TXLNG	0	genome.wustl.edu	37	X	16847735	16847735	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	16847735	16847735	C	T	SNP	TXLNG	ENST00000380122	human	ensembl	74_37	+1	known	nonsense	c.706	p.R236*	0.991	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNG	HGNC	ENSG00000086712				94	0	0	34	13	27.6596
TXLNG	0	genome.wustl.edu	37	X	16850813	16850813	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	16850813	16850813	C	T	SNP	TXLNG	ENST00000380122	human	ensembl	74_37	+1	known	missense	c.932	p.T311M	0.968	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNG	HGNC	ENSG00000086712				157	0	0	70	34	32.6923
TXLNG	0	genome.wustl.edu	37	X	16859628	16859628	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	16859628	16859628	G	A	SNP	TXLNG	ENST00000380122	human	ensembl	74_37	+1	known	silent	c.1326	p.Q442	0.642	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNG	HGNC	ENSG00000086712				108	0	0	41	5	10.8696
REPS2	0	genome.wustl.edu	37	X	17092244	17092244	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	17092244	17092244	C	T	SNP	REPS2	ENST00000357277	human	ensembl	74_37	+1	known	silent	c.1341	p.P447	0.408	NULL	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS2	HGNC	ENSG00000169891				358	0	0	122	61	33.3333
CDKL5	0	genome.wustl.edu	37	X	18606123	18606123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	18606123	18606123	G	A	SNP	CDKL5	ENST00000379989	human	ensembl	74_37	+1	known	missense	c.604	p.G202R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086				449	2	0.443459	158	75	32.1888
SMS	0	genome.wustl.edu	37	X	21995317	21995317	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	21995317	21995317	G	T	SNP	SMS	ENST00000404933	human	ensembl	74_37	+1	known	missense	c.468	p.K156N	0.996	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase	-	no_errors	SMS	HGNC	ENSG00000102172				193	0	0	63	17	21.25
ZBED1	0	genome.wustl.edu	37	X	2408343	2408343	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	2408343	2408343	G	T	SNP	ZBED1	ENST00000381218	human	ensembl	74_37	-1	known	missense	c.418	p.P140T	0.999	NULL	pfam_HATC_dom_C,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717				108	0	0	64	28	30.4348
MAGEB18	0	genome.wustl.edu	37	X	26157454	26157454	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	26157454	26157454	T	G	SNP	MAGEB18	ENST00000325250	human	ensembl	74_37	+1	known	missense	c.352	p.L118V	0.130	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB18	HGNC	ENSG00000176774				26	0	0	11	4	26.6667
DCAF8L1	0	genome.wustl.edu	37	X	27999324	27999324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	27999324	27999324	G	A	SNP	DCAF8L1	ENST00000441525	human	ensembl	74_37	-1	known	missense	c.128	p.A43V	0.020	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372				84	0	0	53	20	27.3973
ARSE	0	genome.wustl.edu	37	X	2867493	2867493	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	2867493	2867493	G	T	SNP	ARSE	ENST00000545496	human	ensembl	74_37	-1	known	missense	c.781	p.L261I	0.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399				87	0	0	35	9	20.4545
FAM47B	0	genome.wustl.edu	37	X	34961045	34961045	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	34961045	34961045	C	T	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	missense	c.97	p.R33C	0.000	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				53	0	0	32	19	37.2549
CYBB	0	genome.wustl.edu	37	X	37664356	37664356	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	37664356	37664356	G	A	SNP	CYBB	ENST00000378588	human	ensembl	74_37	+1	known	missense	c.1249	p.A417T	1.000	pfam_Fe_red_NAD-bd_6,prints_Cyt_b245_heavy_chain	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	CYBB	HGNC	ENSG00000165168				82	0	0	29	20	40.8163
USP9X	0	genome.wustl.edu	37	X	41075795	41075795	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	41075795	41075795	G	A	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	missense	c.5975	p.R1992Q	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				147	0	0	65	29	30.8511
SLC38A5	0	genome.wustl.edu	37	X	48325406	48325406	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	48325406	48325406	C	T	SNP	SLC38A5	ENST00000317669	human	ensembl	74_37	-1	known	missense	c.188	p.G63D	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A5	HGNC	ENSG00000017483				57	0	0	12	11	47.8261
PORCN	0	genome.wustl.edu	37	X	48368302	48368302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	48368302	48368302	C	T	SNP	PORCN	ENST00000326194	human	ensembl	74_37	+1	known	missense	c.94	p.L32F	1.000	NULL	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312				92	0	0	29	11	27.5
DGKK	0	genome.wustl.edu	37	X	50213090	50213090	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	50213090	50213090	C	T	SNP	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466				64	0	0	29	9	23.6842
SSX7	0	genome.wustl.edu	37	X	52682511	52682511	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	52682511	52682511	G	A	SNP	SSX7	ENST00000298181	human	ensembl	74_37	-1	known	silent	c.12	p.D4	0.001	NULL	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX7	HGNC	ENSG00000187754				423	0	0	173	77	30.8
KDM5C	0	genome.wustl.edu	37	X	53241077	53241077	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	53241077	53241077	C	T	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	silent	c.1134	p.R378	0.997	superfamily_Znf_FYVE_PHD	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				36	0	0	19	9	32.1429
KDM5C	0	genome.wustl.edu	37	X	53246351	53246351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	53246351	53246351	G	A	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	missense	c.631	p.R211W	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				35	0	0	9	6	40
RIBC1	0	genome.wustl.edu	37	X	53455587	53455587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	53455587	53455587	G	A	SNP	RIBC1	ENST00000457095	human	ensembl	74_37	+1	known	missense	c.556	p.G186S	0.000	NULL	pfam_RIB43A	-	no_errors	RIBC1	HGNC	ENSG00000158423				49	0	0	11	6	35.2941
HUWE1	0	genome.wustl.edu	37	X	53566005	53566005	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	53566005	53566005	T	C	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.11669	p.H3890R	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				51	0	0	12	7	36.8421
WNK3	0	genome.wustl.edu	37	X	54278032	54278032	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	54278032	54278032	T	C	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	missense	c.2456	p.H819R	0.962	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				53	0	0	28	8	22.2222
MAGED2	0	genome.wustl.edu	37	X	54836447	54836447	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	54836447	54836447	C	T	SNP	MAGED2	ENST00000218439	human	ensembl	74_37	+1	known	missense	c.338	p.P113L	0.022	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED2	HGNC	ENSG00000102316				22	0	0	13	4	23.5294
ZXDA	0	genome.wustl.edu	37	X	57935671	57935671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	57935671	57935671	C	T	SNP	ZXDA	ENST00000358697	human	ensembl	74_37	-1	known	missense	c.1184	p.G395D	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDA	HGNC	ENSG00000198205				198	0	0	54	32	37.2093
NLGN4X	0	genome.wustl.edu	37	X	5947435	5947435	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	5947435	5947435	A	G	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	missense	c.571	p.Y191H	0.982	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				84	0	0	24	20	45.4545
STARD8	0	genome.wustl.edu	37	X	67941513	67941513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	67941513	67941513	C	T	SNP	STARD8	ENST00000374599	human	ensembl	74_37	+1	known	missense	c.2384	p.A795V	0.948	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052				126	0	0	43	14	24.5614
ZMYM3	0	genome.wustl.edu	37	X	70468578	70468578	+	Silent	SNP	T	T	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	70468578	70468578	T	G	SNP	ZMYM3	ENST00000373988	human	ensembl	74_37	-1	known	silent	c.1701	p.T567	1.000	pfam_Znf_MYM,smart_TRASH_dom	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM3	HGNC	ENSG00000147130				31	0	0	7	4	36.3636
TAF1	0	genome.wustl.edu	37	X	70612474	70612474	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	70612474	70612474	A	T	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.2834	p.K945M	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				113	0	0	46	17	26.9841
ERCC6L	0	genome.wustl.edu	37	X	71428342	71428342	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	71428342	71428342	A	G	SNP	ERCC6L	ENST00000334463	human	ensembl	74_37	-1	known	missense	c.275	p.L92P	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871				232	0	0	129	56	30.2703
XIST	0	genome.wustl.edu	37	X	73065225	73065225	+	RNA	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	73065225	73065225	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				253	0	0	94	60	38.961
RLIM	0	genome.wustl.edu	37	X	73811803	73811803	+	Silent	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	73811803	73811803	A	T	SNP	RLIM	ENST00000332687	human	ensembl	74_37	-1	known	silent	c.1347	p.S449	0.996	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RLIM	HGNC	ENSG00000131263				192	0	0	75	24	24.2424
MAGEE1	0	genome.wustl.edu	37	X	75648366	75648366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	75648366	75648366	G	A	SNP	MAGEE1	ENST00000361470	human	ensembl	74_37	+1	known	missense	c.43	p.V15I	0.013	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934				42	0	0	21	7	25
CYSLTR1	0	genome.wustl.edu	37	X	77528566	77528566	+	Silent	SNP	T	T	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	77528566	77528566	T	C	SNP	CYSLTR1	ENST00000373304	human	ensembl	74_37	-1	known	silent	c.678	p.S226	0.279	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_CLT1_recept,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	CYSLTR1	HGNC	ENSG00000173198				76	0	0	37	16	30.1887
POU3F4	0	genome.wustl.edu	37	X	82763842	82763842	+	Silent	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	82763842	82763842	G	A	SNP	POU3F4	ENST00000373200	human	ensembl	74_37	+1	known	silent	c.510	p.P170	0.864	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767				28	0	0	12	8	40
ZNF711	0	genome.wustl.edu	37	X	84510755	84510755	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	84510755	84510755	T	A	SNP	ZNF711	ENST00000395402	human	ensembl	74_37	+1	known	missense	c.504	p.D168E	0.978	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180				135	0	0	63	26	29.2135
KAL1	0	genome.wustl.edu	37	X	8538695	8538695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	8538695	8538695	C	T	SNP	KAL1	ENST00000262648	human	ensembl	74_37	-1	known	missense	c.907	p.V303I	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_WAP-type_4-diS_core	-	no_errors	KAL1	HGNC	ENSG00000011201				55	0	0	22	10	31.25
KAL1	0	genome.wustl.edu	37	X	8555939	8555939	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	8555939	8555939	A	T	SNP	KAL1	ENST00000262648	human	ensembl	74_37	-1	known	missense	c.622	p.F208I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_WAP-type_4-diS_core	-	no_errors	KAL1	HGNC	ENSG00000011201				39	0	0	20	9	31.0345
DACH2	0	genome.wustl.edu	37	X	85906124	85906124	+	Silent	SNP	C	C	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	85906124	85906124	C	T	SNP	DACH2	ENST00000373125	human	ensembl	74_37	+1	known	silent	c.726	p.S242	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733				72	0	0	19	8	29.6296
DIAPH2	0	genome.wustl.edu	37	X	96212939	96212939	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	96212939	96212939	C	A	SNP	DIAPH2	ENST00000324765	human	ensembl	74_37	+1	known	missense	c.1727	p.P576H	0.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH2	HGNC	ENSG00000147202				53	0	0	21	6	22.2222
TSPAN6	0	genome.wustl.edu	37	X	99891687	99891687	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	99891687	99891687	G	A	SNP	TSPAN6	ENST00000373020	human	ensembl	74_37	-1	known	missense	c.5	p.A2V	1.000	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN6	HGNC	ENSG00000000003				26	0	0	9	5	35.7143
SASS6	0	genome.wustl.edu	37	1	100588802	100588802	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	100588802	100588802	A	-	DEL	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	frame_shift_del	c.170	p.L57fs	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				47	0	0	24	10	29.4118
LOC100129138	0	genome.wustl.edu	37	1	104615719	104615720	+	RNA	DEL	AC	AC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	104615719	104615720	AC	-	DEL	LOC100129138	ENST00000418362	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.648:0.573	-	-	-	no_errors	RP11-364B6.1	Clone_based_vega_gene	ENSG00000215869				36	0	0	12	5	29.4118
KCNC4	0	genome.wustl.edu	37	1	110754185	110754185	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	110754185	110754185	A	-	DEL	KCNC4	ENST00000369787	human	ensembl	74_37	+1	known	frame_shift_del	c.64	p.T23fs	1.000	pfam_K_chnl_volt-dep_Kv3_ID,prints_K_chnl_volt-dep_Kv3.4	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_K_chnl_volt-dep_Kv3_ID,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.4,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC4	HGNC	ENSG00000116396				74	0	0	21	4	16
EXOSC10	0	genome.wustl.edu	37	1	11128120	11128120	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	11128120	11128120	T	-	DEL	EXOSC10	ENST00000376936	human	ensembl	74_37	-1	known	frame_shift_del	c.2572	p.I858fs	0.002	NULL	pfam_3'-5'_exonuclease_dom,pfam_Exosome-assoc_fac_Rrp6_N,pfam_HRDC_dom,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_HRDC_dom,pfscan_HRDC_dom	-	no_errors	EXOSC10	HGNC	ENSG00000171824				143	0	0	49	16	24.6154
SYCP1	0	genome.wustl.edu	37	1	115527421	115527421	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	115527421	115527421	A	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.2635	p.K881fs	0.018	NULL	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				184	0	0	63	22	25.8824
VWA1	0	genome.wustl.edu	37	1	1372689	1372689	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	1372689	1372689	C	-	DEL	VWA1	ENST00000476993	human	ensembl	74_37	+1	known	frame_shift_del	c.456	p.M155fs	0.512	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	VWA1	HGNC	ENSG00000179403				27	0	0	12	4	25
TXNIP	0	genome.wustl.edu	37	1	145438750	145438750	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	145438750	145438750	T	-	DEL	TXNIP	ENST00000475171	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TXNIP	HGNC	ENSG00000117289				88	0	0	26	10	27.7778
PIAS3	0	genome.wustl.edu	37	1	145578385	145578385	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	145578385	145578385	C	-	DEL	PIAS3	ENST00000393045	human	ensembl	74_37	+1	known	frame_shift_del	c.348	p.P118fs	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS3	HGNC	ENSG00000131788				183	0	0	80	26	24.5283
MTMR11	0	genome.wustl.edu	37	1	149900986	149900989	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	149900986	149900989	AAAA	-	DEL	MTMR11	ENST00000466496	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.002:0.003:0.001	-	-	-	no_errors	MTMR11	HGNC	ENSG00000014914				85	0	0	35	7	16.6667
OTUD7B	0	genome.wustl.edu	37	1	149916627	149916627	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	149916627	149916627	T	-	DEL	OTUD7B	ENST00000369135	human	ensembl	74_37	-1	known	frame_shift_del	c.1661	p.N554fs	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113				224	0	0	120	36	23.0769
VPS45	0	genome.wustl.edu	37	1	150082514	150082514	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	150082514	150082514	A	-	DEL	VPS45	ENST00000484306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.965	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631				13	0	0	12	6	33.3333
RPRD2	0	genome.wustl.edu	37	1	150445612	150445612	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	150445612	150445612	C	-	DEL	RPRD2	ENST00000369068	human	ensembl	74_37	+1	known	frame_shift_del	c.4188	p.L1399fs	0.993	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_CID_dom	-	no_errors	RPRD2	HGNC	ENSG00000163125				151	0	0	56	19	25.3333
ADAMTSL4	0	genome.wustl.edu	37	1	150526141	150526141	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	150526141	150526141	C	-	DEL	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	frame_shift_del	c.674	p.Q227fs	0.047	pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				176	0	0	68	25	26.8817
RFX5	0	genome.wustl.edu	37	1	151314788	151314789	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	151314788	151314789	-	T	INS	RFX5	ENST00000290524	human	ensembl	74_37	-1	known	frame_shift_ins	c.1725_1724	p.E576fs	1.000:1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX5	HGNC	ENSG00000143390				207	0	0	88	38	30.1587
RFX5	0	genome.wustl.edu	37	1	151317583	151317583	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	151317583	151317583	T	-	DEL	RFX5	ENST00000290524	human	ensembl	74_37	-1	known	frame_shift_del	c.232	p.S78fs	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX5	HGNC	ENSG00000143390				70	0	0	32	16	33.3333
FLG	0	genome.wustl.edu	37	1	152280785	152280785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	152280785	152280785	T	-	DEL	FLG	ENST00000368799	human	ensembl	74_37	-1	known	frame_shift_del	c.6577	p.T2193fs	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				790	0	0	262	116	30.6878
SHC1	0	genome.wustl.edu	37	1	154942911	154942911	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	154942911	154942911	G	-	DEL	SHC1	ENST00000368445	human	ensembl	74_37	-1	known	frame_shift_del	c.92	p.P31fs	1.000	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691				109	0	0	39	11	22
DCST1	0	genome.wustl.edu	37	1	155006873	155006874	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	155006873	155006874	-	A	INS	DCST1	ENST00000525273	human	ensembl	74_37	+1	known	frame_shift_ins	c.99_100	p.S34fs	0.001:0.000	NULL	pfam_DC_STAMP-like	-	no_errors	DCST1	HGNC	ENSG00000163357				409	0	0	152	45	22.8426
GON4L	0	genome.wustl.edu	37	1	155785777	155785778	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	155785777	155785778	AA	-	DEL	GON4L	ENST00000471341	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580				16	0	0	8	8	50
LMNA	0	genome.wustl.edu	37	1	156106015	156106016	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	156106015	156106016	-	C	INS	LMNA	ENST00000368300	human	ensembl	74_37	+1	known	frame_shift_ins	c.1168_1169	p.S392fs	1.000:1.000	NULL	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNA	HGNC	ENSG00000160789				81	0	0	34	12	26.087
ISG20L2	0	genome.wustl.edu	37	1	156694022	156694023	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	156694022	156694023	-	G	INS	ISG20L2	ENST00000313146	human	ensembl	74_37	-1	known	frame_shift_ins	c.866_865	p.L289fs	1.000:0.997	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ISG20L2	HGNC	ENSG00000143319				167	0	0	69	19	21.5909
FCRL3	0	genome.wustl.edu	37	1	157666960	157666960	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	157666960	157666960	T	-	DEL	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	frame_shift_del	c.814	p.R272fs	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856				104	0	0	41	12	22.6415
OR6N2	0	genome.wustl.edu	37	1	158746767	158746768	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	158746767	158746768	-	T	INS	OR6N2	ENST00000339258	human	ensembl	74_37	-1	known	frame_shift_ins	c.659_658	p.R220fs	0.001:0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N2	HGNC	ENSG00000188340				45	0	0	43	17	28.3333
NDUFS2	0	genome.wustl.edu	37	1	161176356	161176358	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	161176356	161176358	AGA	-	DEL	NDUFS2	ENST00000367993	human	ensembl	74_37	+1	known	in_frame_del	c.362_364	p.K122in_frame_del	1.000:1.000:1.000	tigrfam_NDH1_su_D/H	pfam_NADH_Q_OxRdtase_suD,tigrfam_NDH1_su_D/H	-	no_errors	NDUFS2	HGNC	ENSG00000158864				60	0	0	15	7	31.8182
CD247	0	genome.wustl.edu	37	1	167404559	167404560	+	RNA	INS	-	-	TG			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	167404559	167404560	-	TG	INS	CD247	ENST00000483825	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.022:0.021	-	-	-	no_errors	CD247	HGNC	ENSG00000198821				21	0	0	6	4	40
RCSD1	0	genome.wustl.edu	37	1	167654711	167654711	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	167654711	167654711	C	-	DEL	RCSD1	ENST00000367854	human	ensembl	74_37	+1	known	frame_shift_del	c.162	p.K57fs	1.000	NULL	pfam_RCSD	-	no_errors	RCSD1	HGNC	ENSG00000198771				164	0	0	51	17	25
PADI6	0	genome.wustl.edu	37	1	17721598	17721598	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	17721598	17721598	A	-	DEL	PADI6	ENST00000358481	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PADI6	HGNC	ENSG00000256049				199	0	0	55	21	27.6316
RASAL2	0	genome.wustl.edu	37	1	178412041	178412041	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	178412041	178412041	A	-	DEL	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	frame_shift_del	c.1159	p.K389fs	1.000	superfamily_C2_dom,smart_C2_dom	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391				123	0	0	81	12	12.9032
NPHS2	0	genome.wustl.edu	37	1	179528881	179528881	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	179528881	179528881	A	-	DEL	NPHS2	ENST00000367615	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.L156fs	1.000	pfam_Band_7,smart_Band_7	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	NPHS2	HGNC	ENSG00000116218				15	0	0	3	3	50
LAMC1	0	genome.wustl.edu	37	1	183109589	183109590	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	183109589	183109590	CT	-	DEL	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	frame_shift_del	c.4524_4525	p.S1509fs	0.994:0.997	NULL	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				64	0	0	29	12	29.2683
NCF2	0	genome.wustl.edu	37	1	183533129	183533129	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	183533129	183533129	A	-	DEL	NCF2	ENST00000469280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	NCF2	HGNC	ENSG00000116701				399	0	0	108	43	28.4768
COLGALT2	0	genome.wustl.edu	37	1	183938468	183938468	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	183938468	183938468	G	-	DEL	COLGALT2	ENST00000361927	human	ensembl	74_37	-1	known	frame_shift_del	c.767	p.P256fs	1.000	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT2	HGNC	ENSG00000198756				179	0	0	76	18	19.1489
SWT1	0	genome.wustl.edu	37	1	185130053	185130053	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	185130053	185130053	A	-	DEL	SWT1	ENST00000367500	human	ensembl	74_37	+1	known	frame_shift_del	c.80	p.D29fs	0.997	NULL	smart_PIN_dom	-	no_errors	SWT1	HGNC	ENSG00000116668				67	0	0	26	5	16.129
PLA2G4A	0	genome.wustl.edu	37	1	186908212	186908213	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	186908212	186908213	-	A	INS	PLA2G4A	ENST00000367466	human	ensembl	74_37	+1	known	frame_shift_ins	c.768_769	p.N257fs	1.000:1.000	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4A	HGNC	ENSG00000116711				136	0	0	42	14	25
RPS10P7	0	genome.wustl.edu	37	1	201489719	201489720	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	201489719	201489720	AA	-	DEL	RPS10P7	ENST00000441932	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.056:0.062	-	-	-	no_errors	RPS10P7	HGNC	ENSG00000223396				9	0	0	3	3	50
LRRN2	0	genome.wustl.edu	37	1	204587829	204587829	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	204587829	204587829	G	-	DEL	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	frame_shift_del	c.1292	p.P431fs	0.386	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				87	0	0	15	17	53.125
NFASC	0	genome.wustl.edu	37	1	204924033	204924033	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	204924033	204924033	C	-	DEL	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	frame_shift_del	c.489	p.P165fs	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				373	0	0	77	77	50
AVPR1B	0	genome.wustl.edu	37	1	206224854	206224854	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	206224854	206224854	C	-	DEL	AVPR1B	ENST00000367126	human	ensembl	74_37	+1	known	frame_shift_del	c.414	p.L140fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vprs_V1A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vprs_rcpt_V1B,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn,prints_Vprs_V1A_rcpt	-	no_errors	AVPR1B	HGNC	ENSG00000198049				112	0	0	49	9	15.5172
CR2	0	genome.wustl.edu	37	1	207642044	207642044	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	207642044	207642044	C	-	DEL	CR2	ENST00000367057	human	ensembl	74_37	+1	known	frame_shift_del	c.618	p.T209fs	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322				253	0	0	109	35	24.3056
EIF4G3	0	genome.wustl.edu	37	1	21226331	21226332	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	21226331	21226332	-	T	INS	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	frame_shift_ins	c.1708_1707	p.V569fs	0.001:0.003	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151				383	0	0	176	42	19.2661
TMEM206	0	genome.wustl.edu	37	1	212548597	212548597	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	212548597	212548597	T	-	DEL	TMEM206	ENST00000535273	human	ensembl	74_37	-1	known	frame_shift_del	c.1012	p.S338fs	0.016	NULL	NULL	-	no_errors	TMEM206	HGNC	ENSG00000065600				138	0	0	53	8	13.1148
WNT9A	0	genome.wustl.edu	37	1	228111953	228111954	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	228111953	228111954	-	C	INS	WNT9A	ENST00000272164	human	ensembl	74_37	-1	known	frame_shift_ins	c.501_500	p.C168fs	1.000:1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt9a	-	no_errors	WNT9A	HGNC	ENSG00000143816				279	0	0	86	25	22.5225
TRIM17	0	genome.wustl.edu	37	1	228596779	228596779	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	228596779	228596779	C	-	DEL	TRIM17	ENST00000456946	human	ensembl	74_37	-1	known	frame_shift_del	c.977	p.G326fs	0.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM17	HGNC	ENSG00000162931				50	0	0	28	11	28.2051
LYST	0	genome.wustl.edu	37	1	235897964	235897964	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	235897964	235897964	A	-	DEL	LYST	ENST00000473037	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.917	-	-	-	no_errors	LYST	HGNC	ENSG00000143669				81	0	0	34	11	24.4444
MTR	0	genome.wustl.edu	37	1	237024474	237024475	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	237024474	237024475	AA	-	DEL	MTR	ENST00000366577	human	ensembl	74_37	+1	known	frame_shift_del	c.2093_2094	p.K700fs	0.988:0.988	pfam_Cbl-bd_cap,superfamily_Cbl-bd_cap,pirsf_MetH,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				123	0	0	40	18	31.0345
CHRM3	0	genome.wustl.edu	37	1	240072444	240072444	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	240072444	240072444	A	-	DEL	CHRM3	ENST00000255380	human	ensembl	74_37	+1	known	frame_shift_del	c.1693	p.K567fs	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M3_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019				110	1	0.900901	39	11	22
WDR64	0	genome.wustl.edu	37	1	241964455	241964455	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	241964455	241964455	A	-	DEL	WDR64	ENST00000366552	human	ensembl	74_37	+1	known	frame_shift_del	c.3184	p.N1064fs	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843				132	0	0	50	19	27.5362
TMEM57	0	genome.wustl.edu	37	1	25785019	25785019	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	25785019	25785019	A	-	DEL	TMEM57	ENST00000374343	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.K265fs	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178				156	0	0	66	30	31.25
LDLRAP1	0	genome.wustl.edu	37	1	25889632	25889632	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	25889632	25889632	T	-	DEL	LDLRAP1	ENST00000374338	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.S202fs	0.000	NULL	pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	LDLRAP1	HGNC	ENSG00000157978				102	1	0.970874	32	9	21.9512
CNKSR1	0	genome.wustl.edu	37	1	26510310	26510311	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	26510310	26510311	-	C	INS	CNKSR1	ENST00000374253	human	ensembl	74_37	+1	known	frame_shift_ins	c.865_866	p.Q292fs	0.002:0.000	NULL	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675				75	0	0	32	11	25.5814
ARID1A	0	genome.wustl.edu	37	1	27101268	27101268	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	27101268	27101268	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.4550	p.Q1519fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				162	0	0	66	25	27.4725
ARID1A	0	genome.wustl.edu	37	1	27105930	27105931	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	27105930	27105931	-	G	INS	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_ins	c.5541_5542	p.D1849fs	1.000:1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				166	0	0	96	25	20.6612
WDTC1	0	genome.wustl.edu	37	1	27621107	27621108	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	27621107	27621108	-	G	INS	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	frame_shift_ins	c.860_861	p.E290fs	1.000:1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				67	0	0	22	7	24.1379
WDTC1	0	genome.wustl.edu	37	1	27621108	27621108	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	27621108	27621108	G	-	DEL	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	frame_shift_del	c.861	p.E290fs	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				67	0	0	21	8	27.5862
GMEB1	0	genome.wustl.edu	37	1	29041386	29041387	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	29041386	29041387	AA	-	DEL	GMEB1	ENST00000480454	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.252:0.049	-	-	-	no_errors	GMEB1	HGNC	ENSG00000162419				12	0	0	6	9	60
FNDC5	0	genome.wustl.edu	37	1	33330280	33330280	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	33330280	33330280	C	-	DEL	FNDC5	ENST00000609187	human	ensembl	74_37	-1	known	frame_shift_del	c.393	p.L132fs	0.275	NULL	superfamily_Fibronectin_type3	-	no_errors	FNDC5	HGNC	ENSG00000160097				94	0	0	51	17	25
MEGF6	0	genome.wustl.edu	37	1	3418429	3418429	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	3418429	3418429	C	-	DEL	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	frame_shift_del	c.2245	p.A749fs	0.930	smart_EG-like_dom,smart_EGF_laminin	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				92	0	0	23	7	23.3333
DLGAP3	0	genome.wustl.edu	37	1	35365852	35365852	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	35365852	35365852	C	-	DEL	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	frame_shift_del	c.1130	p.G377fs	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544				182	0	0	89	25	21.9298
ZMYM4	0	genome.wustl.edu	37	1	35846960	35846960	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	35846960	35846960	A	-	DEL	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	frame_shift_del	c.1282	p.K430fs	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				116	0	0	53	25	32.0513
ENSG00000232335	0	genome.wustl.edu	37	1	36208989	36208989	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	36208989	36208989	A	-	DEL	ENSG00000232335	ENST00000373226	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-435D7.3	Clone_based_vega_gene	ENSG00000232335				79	0	0	20	35	63.6364
ENSG00000271554	0	genome.wustl.edu	37	1	36475027	36475028	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	36475027	36475028	AA	-	DEL	ENSG00000271554	ENST00000479395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011:0.004	-	-	-	no_errors	RP4-665N4.8	Clone_based_vega_gene	ENSG00000271554				63	0	0	18	12	40
COL8A2	0	genome.wustl.edu	37	1	36564202	36564203	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	36564202	36564203	-	G	INS	COL8A2	ENST00000303143	human	ensembl	74_37	-1	known	frame_shift_ins	c.1080_1079	p.G361fs	1.000:1.000	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A2	HGNC	ENSG00000171812				46	0	0	5	4	44.4444
PPCS	0	genome.wustl.edu	37	1	42925658	42925658	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	42925658	42925658	A	-	DEL	PPCS	ENST00000469615	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	PPCS	HGNC	ENSG00000127125				31	0	0	13	20	60.6061
TIE1	0	genome.wustl.edu	37	1	43779724	43779725	+	RNA	INS	-	-	TGTG			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	43779724	43779725	-	TGTG	INS	TIE1	ENST00000471187	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	TIE1	HGNC	ENSG00000066056				19	0	0	9	4	30.7692
ERI3	0	genome.wustl.edu	37	1	44820660	44820660	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	44820660	44820660	C	-	DEL	ERI3	ENST00000372257	human	ensembl	74_37	-1	known	frame_shift_del	c.39	p.R14fs	1.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ERI3	HGNC	ENSG00000117419				26	0	0	10	4	28.5714
GPBP1L1	0	genome.wustl.edu	37	1	46120889	46120890	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	46120889	46120890	-	A	INS	GPBP1L1	ENST00000290795	human	ensembl	74_37	-1	known	frame_shift_ins	c.163_162	p.N54fs	1.000:1.000	NULL	NULL	-	no_errors	GPBP1L1	HGNC	ENSG00000159592				181	0	0	83	28	25.2252
AJAP1	0	genome.wustl.edu	37	1	4829992	4829992	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	4829992	4829992	A	-	DEL	AJAP1	ENST00000378190	human	ensembl	74_37	+1	known	frame_shift_del	c.909	p.N305fs	1.000	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581				234	0	0	71	36	33.6449
SLC5A9	0	genome.wustl.edu	37	1	48698101	48698101	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	48698101	48698101	G	-	DEL	SLC5A9	ENST00000236495	human	ensembl	74_37	+1	known	frame_shift_del	c.1035	p.G347fs	0.988	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834				81	0	0	27	8	22.8571
ORC1	0	genome.wustl.edu	37	1	52849592	52849592	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	52849592	52849592	T	-	DEL	ORC1	ENST00000371566	human	ensembl	74_37	-1	known	frame_shift_del	c.1773	p.A592fs	1.000	pfam_ATPase_AAA_core,pfam_DUF2075,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_BAH_dom,pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,pfam_DUF2075,superfamily_P-loop_NTPase,smart_BAH_dom,smart_AAA+_ATPase,pfscan_BAH_dom	-	no_errors	ORC1	HGNC	ENSG00000085840				94	0	0	32	9	21.9512
PRPF38A	0	genome.wustl.edu	37	1	52874256	52874256	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	52874256	52874256	G	-	DEL	PRPF38A	ENST00000257181	human	ensembl	74_37	+1	known	frame_shift_del	c.306	p.A104fs	1.000	pfam_PRP38	pfam_PRP38	-	no_errors	PRPF38A	HGNC	ENSG00000134748				118	0	0	64	25	28.0899
GLIS1	0	genome.wustl.edu	37	1	54060232	54060232	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	54060232	54060232	C	-	DEL	GLIS1	ENST00000312233	human	ensembl	74_37	-1	known	frame_shift_del	c.344	p.G115fs	0.059	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS1	HGNC	ENSG00000174332				97	0	0	25	11	30.5556
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				53	0	0	27	9	25
USP1	0	genome.wustl.edu	37	1	62916272	62916272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	62916272	62916272	A	-	DEL	USP1	ENST00000339950	human	ensembl	74_37	+1	known	frame_shift_del	c.1978	p.N662fs	1.000	pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP1	HGNC	ENSG00000162607				124	0	0	44	21	32.3077
MIER1	0	genome.wustl.edu	37	1	67425495	67425495	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	67425495	67425495	T	-	DEL	MIER1	ENST00000493357	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIER1	HGNC	ENSG00000198160				35	0	0	11	7	38.8889
GNG12	0	genome.wustl.edu	37	1	68171151	68171151	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	68171151	68171151	T	-	DEL	GNG12	ENST00000370982	human	ensembl	74_37	-1	known	frame_shift_del	c.202	p.T68fs	1.000	smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG12	HGNC	ENSG00000172380				190	0	0	35	40	53.3333
C1orf173	0	genome.wustl.edu	37	1	75078435	75078436	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	75078435	75078436	-	A	INS	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	frame_shift_ins	c.1059_1058	p.L354fs	1.000:1.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				75	0	0	37	19	33.9286
FUBP1	0	genome.wustl.edu	37	1	78433854	78433854	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	78433854	78433854	T	-	DEL	FUBP1	ENST00000436586	human	ensembl	74_37	-1	known	frame_shift_del	c.308	p.N103fs	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613				80	0	0	31	7	18.4211
TTLL7	0	genome.wustl.edu	37	1	84335733	84335735	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	84335733	84335735	AAG	-	DEL	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	in_frame_del	c.2576_2574	p.F858in_frame_del	1.000:1.000:1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				79	0	0	27	10	27.027
EVI5	0	genome.wustl.edu	37	1	93073081	93073081	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	93073081	93073081	A	-	DEL	EVI5	ENST00000492513	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EVI5	HGNC	ENSG00000067208				18	0	0	13	3	18.75
MTF2	0	genome.wustl.edu	37	1	93580631	93580632	+	In_Frame_Ins	INS	-	-	CAA			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	1	93580631	93580632	-	CAA	INS	MTF2	ENST00000370298	human	ensembl	74_37	+1	known	in_frame_ins	c.469_470	p.161in_frame_insT	1.000:1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033				79	0	0	42	10	19.2308
ABCC2	0	genome.wustl.edu	37	10	101554309	101554309	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	101554309	101554309	T	-	DEL	ABCC2	ENST00000496621	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ABCC2	HGNC	ENSG00000023839				18	0	0	7	4	36.3636
LZTS2	0	genome.wustl.edu	37	10	102762593	102762593	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	102762593	102762593	C	-	DEL	LZTS2	ENST00000370220	human	ensembl	74_37	+1	known	frame_shift_del	c.298	p.S102fs	0.387	NULL	NULL	-	no_errors	LZTS2	HGNC	ENSG00000107816				84	0	0	48	16	25
DPCD	0	genome.wustl.edu	37	10	103339944	103339944	+	RNA	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	103339944	103339944	G	-	DEL	DPCD	ENST00000470165	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DPCD	HGNC	ENSG00000166171				64	0	0	24	4	14.2857
KCNIP2	0	genome.wustl.edu	37	10	103590899	103590899	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	103590899	103590899	T	-	DEL	KCNIP2	ENST00000461105	human	ensembl	74_37	-1	known	frame_shift_del	c.99	p.A34fs	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	KCNIP2	HGNC	ENSG00000120049				37	0	0	10	3	23.0769
GBF1	0	genome.wustl.edu	37	10	104120909	104120909	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	104120909	104120909	A	-	DEL	GBF1	ENST00000476019	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GBF1	HGNC	ENSG00000107862				55	0	0	40	17	29.8246
CNNM2	0	genome.wustl.edu	37	10	104679763	104679763	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	104679763	104679763	C	-	DEL	CNNM2	ENST00000369878	human	ensembl	74_37	+1	known	frame_shift_del	c.1526	p.L511fs	1.000	NULL	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842				195	1	0.510204	96	37	27.8195
SH3PXD2A	0	genome.wustl.edu	37	10	105361689	105361689	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	105361689	105361689	C	-	DEL	SH3PXD2A	ENST00000369774	human	ensembl	74_37	-1	known	frame_shift_del	c.3286	p.V1096fs	0.998	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957				209	0	0	98	33	25.1908
CCDC147	0	genome.wustl.edu	37	10	106152048	106152048	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	106152048	106152048	A	-	DEL	CCDC147	ENST00000369704	human	ensembl	74_37	+1	known	frame_shift_del	c.1423	p.I477fs	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051				189	0	0	83	26	23.8532
ATRNL1	0	genome.wustl.edu	37	10	116887435	116887435	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	116887435	116887435	T	-	DEL	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	frame_shift_del	c.570	p.F192fs	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518				36	0	0	9	5	35.7143
KIAA1598	0	genome.wustl.edu	37	10	118719757	118719757	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	118719757	118719757	A	-	DEL	KIAA1598	ENST00000490615	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIAA1598	HGNC	ENSG00000187164				74	0	0	15	13	46.4286
FAM24B	0	genome.wustl.edu	37	10	124608920	124608920	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	124608920	124608920	T	-	DEL	FAM24B	ENST00000368896	human	ensembl	74_37	-1	known	frame_shift_del	c.128	p.N43fs	0.000	NULL	NULL	-	no_errors	FAM24B	HGNC	ENSG00000213185				131	0	0	74	18	19.5652
DPYSL4	0	genome.wustl.edu	37	10	134017254	134017254	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	134017254	134017254	C	-	DEL	DPYSL4	ENST00000471544	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DPYSL4	HGNC	ENSG00000151640				67	0	0	24	8	25
PWWP2B	0	genome.wustl.edu	37	10	134218281	134218281	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	134218281	134218281	C	-	DEL	PWWP2B	ENST00000305233	human	ensembl	74_37	+1	known	frame_shift_del	c.277	p.E95fs	0.000	NULL	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	PWWP2B	HGNC	ENSG00000171813				47	0	0	21	5	19.2308
ST8SIA6	0	genome.wustl.edu	37	10	17363321	17363321	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	17363321	17363321	T	-	DEL	ST8SIA6	ENST00000377602	human	ensembl	74_37	-1	known	frame_shift_del	c.753	p.A252fs	0.024	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA6	HGNC	ENSG00000148488				85	0	0	53	20	27.3973
MIR511-2	0	genome.wustl.edu	37	10	18134079	18134079	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	18134079	18134079	T	-	DEL	MIR511-2	ENST00000385203	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	MIR511-2	HGNC	ENSG00000207938				75	0	0	72	4	5.26316
ARMC4	0	genome.wustl.edu	37	10	28233164	28233164	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	28233164	28233164	C	-	DEL	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	frame_shift_del	c.1730	p.G577fs	1.000	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126				27	0	0	19	7	26.9231
MPP7	0	genome.wustl.edu	37	10	28343108	28343108	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	28343108	28343108	A	-	DEL	MPP7	ENST00000337532	human	ensembl	74_37	-1	known	frame_shift_del	c.1617	p.F539fs	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_SH3_domain	-	no_errors	MPP7	HGNC	ENSG00000150054				26	0	0	16	5	23.8095
SVIL	0	genome.wustl.edu	37	10	29760116	29760116	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	29760116	29760116	C	-	DEL	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	frame_shift_del	c.5586	p.M1863fs	0.474	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				32	0	0	10	3	23.0769
PFKP	0	genome.wustl.edu	37	10	3172106	3172106	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	3172106	3172106	G	-	DEL	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	frame_shift_del	c.1779	p.L596fs	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				143	0	0	55	18	24.6575
KIF5B	0	genome.wustl.edu	37	10	32311825	32311826	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	32311825	32311826	-	T	INS	KIF5B	ENST00000302418	human	ensembl	74_37	-1	known	frame_shift_ins	c.1865_1864	p.M622fs	1.000:1.000	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759				137	0	0	67	25	27.1739
ZNF488	0	genome.wustl.edu	37	10	48371277	48371277	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	48371277	48371277	C	-	DEL	ZNF488	ENST00000395702	human	ensembl	74_37	+1	known	frame_shift_del	c.745	p.P250fs	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF488	HGNC	ENSG00000165388				108	0	0	68	23	25.2747
RTKN2	0	genome.wustl.edu	37	10	63958149	63958149	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	63958149	63958149	T	-	DEL	RTKN2	ENST00000373789	human	ensembl	74_37	-1	known	frame_shift_del	c.1348	p.I450fs	1.000	NULL	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010				101	0	0	48	32	40
ENSG00000200294	0	genome.wustl.edu	37	10	73940733	73940733	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	73940733	73940733	T	-	DEL	ENSG00000200294	ENST00000363424	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.371	-	-	-	no_errors	SNORA36	RFAM	ENSG00000200294				13	0	0	3	5	62.5
ZCCHC24	0	genome.wustl.edu	37	10	81146068	81146068	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	81146068	81146068	G	-	DEL	ZCCHC24	ENST00000372333	human	ensembl	74_37	-1	known	frame_shift_del	c.580	p.R194fs	0.001	NULL	NULL	-	no_errors	ZCCHC24	HGNC	ENSG00000165424				17	0	0	10	4	28.5714
CCSER2	0	genome.wustl.edu	37	10	86131826	86131826	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	86131826	86131826	A	-	DEL	CCSER2	ENST00000372088	human	ensembl	74_37	+1	known	frame_shift_del	c.1018	p.N341fs	1.000	NULL	NULL	-	no_errors	CCSER2	HGNC	ENSG00000107771				218	0	0	86	31	26.4957
PTEN	0	genome.wustl.edu	37	10	89720812	89720812	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	89720812	89720812	A	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.963	p.N323fs	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				175	0	0	108	9	7.69231
STAMBPL1	0	genome.wustl.edu	37	10	90682146	90682146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	90682146	90682146	A	-	DEL	STAMBPL1	ENST00000371927	human	ensembl	74_37	+1	known	frame_shift_del	c.1207	p.K405fs	1.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	STAMBPL1	HGNC	ENSG00000138134				116	0	0	30	30	50
ACTA2	0	genome.wustl.edu	37	10	90706853	90706853	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	90706853	90706853	T	-	DEL	ACTA2	ENST00000488967	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.055	-	-	-	no_errors	ACTA2	HGNC	ENSG00000107796				16	0	0	23	7	23.3333
KIF20B	0	genome.wustl.edu	37	10	91497987	91497987	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	91497987	91497987	A	-	DEL	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	frame_shift_del	c.3479	p.N1162fs	0.300	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				176	0	0	59	27	31.3953
BTAF1	0	genome.wustl.edu	37	10	93756247	93756247	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	93756247	93756247	T	-	DEL	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	frame_shift_del	c.3431	p.L1146fs	1.000	superfamily_ARM-type_fold	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				83	0	0	47	16	25.3968
ZNF518A	0	genome.wustl.edu	37	10	97918856	97918856	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	10	97918856	97918856	A	-	DEL	ZNF518A	ENST00000316045	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.867	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853				91	0	0	22	34	60.7143
KIAA1377	0	genome.wustl.edu	37	11	101833648	101833648	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	101833648	101833648	A	-	DEL	KIAA1377	ENST00000263468	human	ensembl	74_37	+1	known	frame_shift_del	c.1882	p.K629fs	0.986	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318				85	0	0	44	13	22.807
MMP3	0	genome.wustl.edu	37	11	102713563	102713563	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	102713563	102713563	T	-	DEL	MMP3	ENST00000299855	human	ensembl	74_37	-1	known	frame_shift_del	c.190	p.I64fs	0.965	pirsf_Pept_M10A_Metazoans,pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP3	HGNC	ENSG00000149968				47	0	0	30	11	26.8293
CASP4	0	genome.wustl.edu	37	11	104825608	104825608	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	104825608	104825608	T	-	DEL	CASP4	ENST00000444739	human	ensembl	74_37	-1	known	frame_shift_del	c.128	p.K43fs	0.002	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP4	HGNC	ENSG00000196954				173	0	0	86	36	29.5082
CWF19L2	0	genome.wustl.edu	37	11	107299560	107299560	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	107299560	107299560	T	-	DEL	CWF19L2	ENST00000282251	human	ensembl	74_37	-1	known	frame_shift_del	c.1398	p.E467fs	0.186	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404				318	0	0	127	55	30.2198
BCO2	0	genome.wustl.edu	37	11	112064312	112064312	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	112064312	112064312	A	-	DEL	BCO2	ENST00000357685	human	ensembl	74_37	+1	known	frame_shift_del	c.409	p.N138fs	0.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580				67	0	0	21	9	30
TTC12	0	genome.wustl.edu	37	11	113230172	113230172	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	113230172	113230172	T	-	DEL	TTC12	ENST00000314756	human	ensembl	74_37	+1	known	frame_shift_del	c.1534	p.F512fs	0.000	superfamily_ARM-type_fold	pfam_TPR_1,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC12	HGNC	ENSG00000149292				175	0	0	68	25	26.8817
BACE1	0	genome.wustl.edu	37	11	117167623	117167623	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	117167623	117167623	G	-	DEL	BACE1	ENST00000313005	human	ensembl	74_37	-1	known	frame_shift_del	c.316	p.H106fs	1.000	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Pept_A1_BACE,prints_Pept_A1_BACE1	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Pept_A1_BACE,prints_Pept_A1_BACE1,prints_Aspartic_peptidase	-	no_errors	BACE1	HGNC	ENSG00000186318				153	0	0	48	9	15.7895
BCL9L	0	genome.wustl.edu	37	11	118773127	118773127	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	118773127	118773127	C	-	DEL	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	frame_shift_del	c.1325	p.G442fs	0.175	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				53	0	0	31	11	26.1905
NLRX1	0	genome.wustl.edu	37	11	119050611	119050611	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	119050611	119050611	G	-	DEL	NLRX1	ENST00000292199	human	ensembl	74_37	+1	known	frame_shift_del	c.1881	p.L630fs	1.000	NULL	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703				115	0	0	72	25	25.7732
SORL1	0	genome.wustl.edu	37	11	121475905	121475905	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	121475905	121475905	A	-	DEL	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	frame_shift_del	c.4735	p.M1581fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				207	0	0	83	24	22.4299
PKNOX2	0	genome.wustl.edu	37	11	125301354	125301354	+	RNA	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	125301354	125301354	G	-	DEL	PKNOX2	ENST00000530517	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.181	-	-	-	no_errors	PKNOX2	HGNC	ENSG00000165495				39	0	0	10	4	28.5714
IGSF22	0	genome.wustl.edu	37	11	18743379	18743380	+	RNA	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	18743379	18743380	-	G	INS	IGSF22	ENST00000412229	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	IGSF22	HGNC	ENSG00000179057				114	0	0	38	15	28.3019
IGF2-AS	0	genome.wustl.edu	37	11	2167576	2167576	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	2167576	2167576	C	-	DEL	IGF2-AS	ENST00000381361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IGF2-AS	HGNC	ENSG00000099869				162	0	0	60	24	28.5714
KCNA4	0	genome.wustl.edu	37	11	30033563	30033563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	30033563	30033563	A	-	DEL	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	frame_shift_del	c.663	p.F221fs	0.902	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				134	1	0.740741	63	27	30
CAT	0	genome.wustl.edu	37	11	34490058	34490058	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	34490058	34490058	A	-	DEL	CAT	ENST00000525707	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CAT	HGNC	ENSG00000121691				15	0	0	6	7	53.8462
ART1	0	genome.wustl.edu	37	11	3681478	3681478	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	3681478	3681478	C	-	DEL	ART1	ENST00000250693	human	ensembl	74_37	+1	known	frame_shift_del	c.729	p.F246fs	0.999	pfam_ART,prints_ART	pfam_ART,prints_ART	-	no_errors	ART1	HGNC	ENSG00000129744				107	0	0	47	9	16.0714
B4GALNT4	0	genome.wustl.edu	37	11	380920	380921	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	380920	380921	-	G	INS	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	frame_shift_ins	c.2965_2966	p.E992fs	1.000:1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				23	0	0	20	6	23.0769
GYLTL1B	0	genome.wustl.edu	37	11	45948373	45948373	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	45948373	45948373	C	-	DEL	GYLTL1B	ENST00000325468	human	ensembl	74_37	+1	known	frame_shift_del	c.1276	p.R428fs	0.023	NULL	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905				98	0	0	32	11	25.5814
PTPMT1	0	genome.wustl.edu	37	11	47594388	47594388	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	47594388	47594388	A	-	DEL	PTPMT1	ENST00000527079	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PTPMT1	HGNC	ENSG00000110536				11	0	0	13	7	35
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				112	0	0	28	15	34.8837
MPEG1	0	genome.wustl.edu	37	11	58978570	58978570	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	58978570	58978570	G	-	DEL	MPEG1	ENST00000361050	human	ensembl	74_37	-1	known	frame_shift_del	c.1769	p.P590fs	0.986	NULL	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629				289	0	0	110	42	27.6316
OR4D11	0	genome.wustl.edu	37	11	59271133	59271134	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	59271133	59271134	-	T	INS	OR4D11	ENST00000313253	human	ensembl	74_37	+1	known	frame_shift_ins	c.85_86	p.L31fs	0.055:0.044	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D11	HGNC	ENSG00000176200				149	0	0	73	34	31.7757
TMEM132A	0	genome.wustl.edu	37	11	60704176	60704176	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	60704176	60704176	G	-	DEL	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	frame_shift_del	c.2872	p.R960fs	0.988	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118				54	0	0	24	8	25
HNRNPUL2	0	genome.wustl.edu	37	11	62491839	62491839	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	62491839	62491839	C	-	DEL	HNRNPUL2	ENST00000301785	human	ensembl	74_37	-1	known	frame_shift_del	c.598	p.V200fs	1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,pfam_Zeta_toxin_domain,pfam_Chromatin_KTI12,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL2	HGNC	ENSG00000214753				160	0	0	84	22	20.7547
SNHG1	0	genome.wustl.edu	37	11	62622692	62622692	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	62622692	62622692	A	-	DEL	SNHG1	ENST00000539921	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG1	HGNC	ENSG00000255717				51	0	0	30	19	38.7755
RARRES3	0	genome.wustl.edu	37	11	63313787	63313787	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	63313787	63313787	C	-	DEL	RARRES3	ENST00000537871	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RARRES3	HGNC	ENSG00000133321				85	0	0	38	17	30.9091
RTN3	0	genome.wustl.edu	37	11	63525656	63525656	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	63525656	63525656	A	-	DEL	RTN3	ENST00000377819	human	ensembl	74_37	+1	known	frame_shift_del	c.3082	p.K1030fs	1.000	pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				71	0	0	40	12	23.0769
CCDC88B	0	genome.wustl.edu	37	11	64120811	64120811	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	64120811	64120811	C	-	DEL	CCDC88B	ENST00000463837	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC88B	HGNC	ENSG00000168071				42	0	0	19	5	20.8333
APBB1	0	genome.wustl.edu	37	11	6424925	6424925	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	6424925	6424925	G	-	DEL	APBB1	ENST00000389906	human	ensembl	74_37	-1	known	frame_shift_del	c.849	p.G284fs	0.480	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_PTB/PI_dom,pfam_WW_dom,pfam_PTB,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB1	HGNC	ENSG00000166313				135	0	0	32	17	34.6939
SF1	0	genome.wustl.edu	37	11	64535117	64535117	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	64535117	64535117	G	-	DEL	SF1	ENST00000377390	human	ensembl	74_37	-1	known	frame_shift_del	c.1268	p.P423fs	1.000	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066				124	0	0	51	21	29.1667
SF1	0	genome.wustl.edu	37	11	64537456	64537457	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	64537456	64537457	CA	-	DEL	SF1	ENST00000377390	human	ensembl	74_37	-1	known	frame_shift_del	c.459_458	p.V153fs	1.000:1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066				51	0	0	25	7	21.875
SLC22A20	0	genome.wustl.edu	37	11	64981481	64981481	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	64981481	64981481	C	-	DEL	SLC22A20	ENST00000525264	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.963	-	-	-	no_errors	SLC22A20	HGNC	ENSG00000197847				26	0	0	15	2	11.7647
SLC25A45	0	genome.wustl.edu	37	11	65144465	65144465	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	65144465	65144465	G	-	DEL	SLC25A45	ENST00000398802	human	ensembl	74_37	-1	known	frame_shift_del	c.422	p.P141fs	0.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A45	HGNC	ENSG00000162241				102	1	0.970874	38	10	20.8333
SCYL1	0	genome.wustl.edu	37	11	65304600	65304601	+	Splice_Site	DEL	GT	GT	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	65304600	65304601	GT	-	DEL	SCYL1	ENST00000270176	human	ensembl	74_37	+1	known	splice_site_del	c.1959+1_1959+1	e14+1	1.000:0.981	-	-	-	no_errors	SCYL1	HGNC	ENSG00000142186				77	0	0	18	2	10
PCNXL3	0	genome.wustl.edu	37	11	65403741	65403741	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	65403741	65403741	C	-	DEL	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	frame_shift_del	c.5556	p.V1855fs	0.970	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				12	0	0	10	4	28.5714
BRMS1	0	genome.wustl.edu	37	11	66108714	66108714	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	66108714	66108714	C	-	DEL	BRMS1	ENST00000425825	human	ensembl	74_37	-1	known	frame_shift_del	c.321	p.L108fs	0.992	pfam_Sds3	pfam_Sds3	-	no_errors	BRMS1	HGNC	ENSG00000174744				96	0	0	43	15	25.8621
TPP1	0	genome.wustl.edu	37	11	6636199	6636199	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	6636199	6636199	C	-	DEL	TPP1	ENST00000299427	human	ensembl	74_37	-1	known	frame_shift_del	c.1449	p.I484fs	0.217	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S53_propep,pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	-	no_errors	TPP1	HGNC	ENSG00000166340				266	1	0.374532	99	39	28.2609
CCS	0	genome.wustl.edu	37	11	66366958	66366958	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	66366958	66366958	G	-	DEL	CCS	ENST00000533244	human	ensembl	74_37	+1	known	frame_shift_del	c.279	p.P96fs	0.968	pfam_SOD_Cu_Zn_dom,superfamily_SOD_Cu_Zn_dom	pfam_SOD_Cu_Zn_dom,pfam_HeavyMe-assoc_HMA,superfamily_SOD_Cu_Zn_dom,superfamily_HeavyMe-assoc_HMA,prints_SOD_Cu_Zn_dom,pfscan_HeavyMe-assoc_HMA	-	no_errors	CCS	HGNC	ENSG00000173992				47	0	0	24	8	25
TBX10	0	genome.wustl.edu	37	11	67402373	67402373	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	67402373	67402373	G	-	DEL	TBX10	ENST00000335385	human	ensembl	74_37	-1	known	frame_shift_del	c.291	p.F98fs	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX10	HGNC	ENSG00000167800				91	0	0	32	11	25.5814
MYEOV	0	genome.wustl.edu	37	11	69063724	69063724	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	69063724	69063724	G	-	DEL	MYEOV	ENST00000308946	human	ensembl	74_37	+1	known	frame_shift_del	c.807	p.W272fs	0.001	NULL	NULL	-	no_errors	MYEOV	HGNC	ENSG00000172927				66	0	0	18	14	43.75
INPPL1	0	genome.wustl.edu	37	11	71948748	71948748	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	71948748	71948748	C	-	DEL	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	frame_shift_del	c.3460	p.R1156fs	0.962	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				35	0	0	9	8	47.0588
ATG16L2	0	genome.wustl.edu	37	11	72535841	72535842	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	72535841	72535842	-	TG	INS	ATG16L2	ENST00000321297	human	ensembl	74_37	+1	known	frame_shift_ins	c.950_951	p.V321fs	0.998:0.964	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_Autophagy-rel_prot_16,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ATG16L2	HGNC	ENSG00000168010				112	0	0	29	8	21.6216
RELT	0	genome.wustl.edu	37	11	73101832	73101832	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	73101832	73101832	C	-	DEL	RELT	ENST00000064780	human	ensembl	74_37	+1	known	frame_shift_del	c.153	p.P53fs	0.993	NULL	pfam_TNF_rcpt_RELT,prints_TNFR_19-like	-	no_errors	RELT	HGNC	ENSG00000054967				141	0	0	57	26	31.3253
USP35	0	genome.wustl.edu	37	11	77911709	77911710	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	77911709	77911710	-	C	INS	USP35	ENST00000529308	human	ensembl	74_37	+1	known	frame_shift_ins	c.1052_1053	p.M354fs	1.000:0.969	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				58	0	0	28	4	12.5
ENSG00000254420	0	genome.wustl.edu	37	11	78154811	78154812	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	78154811	78154812	AA	-	DEL	ENSG00000254420	ENST00000534168	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.006	-	-	-	no_errors	RP11-452H21.1	Clone_based_vega_gene	ENSG00000254420				48	0	0	14	17	54.8387
EED	0	genome.wustl.edu	37	11	85977144	85977144	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	85977144	85977144	A	-	DEL	EED	ENST00000263360	human	ensembl	74_37	+1	known	frame_shift_del	c.746	p.I251fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EED	HGNC	ENSG00000074266				166	0	0	91	33	26.6129
CTSC	0	genome.wustl.edu	37	11	88068108	88068108	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	11	88068108	88068108	A	-	DEL	CTSC	ENST00000227266	human	ensembl	74_37	-1	known	frame_shift_del	c.315	p.F105fs	1.000	pfam_CathepsinC_exc	pfam_Peptidase_C1A_C,pfam_CathepsinC_exc,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSC	HGNC	ENSG00000109861				84	0	0	24	10	29.4118
CHPT1	0	genome.wustl.edu	37	12	102108338	102108338	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	102108338	102108338	T	-	DEL	CHPT1	ENST00000229266	human	ensembl	74_37	+1	known	frame_shift_del	c.478	p.F162fs	0.989	pfam_CDP-OH_P_trans,pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666				88	0	0	35	33	48.5294
ASCL4	0	genome.wustl.edu	37	12	108169097	108169097	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	108169097	108169097	C	-	DEL	ASCL4	ENST00000342331	human	ensembl	74_37	+1	known	frame_shift_del	c.105	p.L37fs	0.003	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ASCL4	HGNC	ENSG00000187855				79	0	0	39	17	30.3571
TCHP	0	genome.wustl.edu	37	12	110344435	110344435	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	110344435	110344435	A	-	DEL	TCHP	ENST00000312777	human	ensembl	74_37	+1	known	frame_shift_del	c.515	p.K174fs	1.000	NULL	NULL	-	no_errors	TCHP	HGNC	ENSG00000139437				96	0	0	42	15	26.3158
ATXN2	0	genome.wustl.edu	37	12	111954046	111954046	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	111954046	111954046	G	-	DEL	ATXN2	ENST00000377617	human	ensembl	74_37	-1	known	frame_shift_del	c.1767	p.S590fs	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842				59	0	0	20	11	35.4839
ACAD10	0	genome.wustl.edu	37	12	112140077	112140078	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	112140077	112140078	-	T	INS	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	frame_shift_ins	c.299_300	p.L102fs	0.014:0.047	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271				208	0	0	133	30	18.4049
MAPKAPK5	0	genome.wustl.edu	37	12	112308145	112308145	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	112308145	112308145	T	-	DEL	MAPKAPK5	ENST00000551404	human	ensembl	74_37	+1	known	frame_shift_del	c.464	p.F156fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPKAPK5	HGNC	ENSG00000089022				56	0	0	18	16	47.0588
ERP29	0	genome.wustl.edu	37	12	112457688	112457688	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	112457688	112457688	G	-	DEL	ERP29	ENST00000261735	human	ensembl	74_37	+1	known	frame_shift_del	c.273	p.I93fs	1.000	pfam_ERp29_N,superfamily_Thioredoxin-like_fold,pirsf_ER_p29	pfam_ERp29_N,pfam_ER_p29_C,superfamily_ER_p29_C,superfamily_Thioredoxin-like_fold,pirsf_ER_p29	-	no_errors	ERP29	HGNC	ENSG00000089248				91	0	0	55	9	14.0625
OAS1	0	genome.wustl.edu	37	12	113346491	113346492	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	113346491	113346492	AG	-	DEL	OAS1	ENST00000445409	human	ensembl	74_37	+1	known	frame_shift_del	c.331_332	p.R113fs	0.000:0.000	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS1	HGNC	ENSG00000089127				112	0	0	51	10	16.3934
IQCD	0	genome.wustl.edu	37	12	113645381	113645381	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	113645381	113645381	T	-	DEL	IQCD	ENST00000416617	human	ensembl	74_37	-1	known	frame_shift_del	c.591	p.K197fs	1.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCD	HGNC	ENSG00000166578				102	0	0	79	34	30.0885
NOS1	0	genome.wustl.edu	37	12	117703230	117703230	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	117703230	117703230	C	-	DEL	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	frame_shift_del	c.2027	p.G676fs	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				27	0	0	6	5	45.4545
HSPB8	0	genome.wustl.edu	37	12	119617377	119617377	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	119617377	119617377	C	-	DEL	HSPB8	ENST00000281938	human	ensembl	74_37	+1	known	frame_shift_del	c.260	p.P89fs	1.000	superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	HSPB8	HGNC	ENSG00000152137				63	0	0	44	8	15.3846
MORN3	0	genome.wustl.edu	37	12	122090652	122090653	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	122090652	122090653	CT	-	DEL	MORN3	ENST00000355329	human	ensembl	74_37	-1	known	frame_shift_del	c.711_710	p.E237fs	0.452:0.415	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN3	HGNC	ENSG00000139714				86	0	0	41	12	22.6415
SBNO1	0	genome.wustl.edu	37	12	123794283	123794283	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	123794283	123794283	T	-	DEL	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	frame_shift_del	c.3416	p.N1139fs	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697				180	0	0	91	72	44.1718
NCOR2	0	genome.wustl.edu	37	12	124832800	124832801	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	124832800	124832801	-	G	INS	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	frame_shift_ins	c.3926_3925	p.H1309fs	0.936:0.940	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				134	0	0	45	8	15.0943
EMP1	0	genome.wustl.edu	37	12	13364427	13364428	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	13364427	13364428	AA	-	DEL	EMP1	ENST00000542289	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	EMP1	HGNC	ENSG00000134531				140	0	0	59	52	46.8468
PIK3C2G	0	genome.wustl.edu	37	12	18491389	18491390	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	18491389	18491390	-	A	INS	PIK3C2G	ENST00000538779	human	ensembl	74_37	+1	known	frame_shift_ins	c.1302_1303	p.I436fs	0.996:0.999	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144				127	0	0	72	16	18.1818
RECQL	0	genome.wustl.edu	37	12	21644547	21644547	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	21644547	21644547	T	-	DEL	RECQL	ENST00000421138	human	ensembl	74_37	-1	known	frame_shift_del	c.120	p.V41fs	0.001	NULL	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700				61	0	0	40	21	34.4262
GOLT1B	0	genome.wustl.edu	37	12	21661406	21661406	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	21661406	21661406	T	-	DEL	GOLT1B	ENST00000229314	human	ensembl	74_37	+1	known	frame_shift_del	c.207	p.L72fs	0.588	pfam_Vesicle_transpt_Got1/SFT2	pfam_Vesicle_transpt_Got1/SFT2	-	no_errors	GOLT1B	HGNC	ENSG00000111711				77	0	0	52	18	25.7143
ASUN	0	genome.wustl.edu	37	12	27069026	27069026	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	27069026	27069026	A	-	DEL	ASUN	ENST00000261191	human	ensembl	74_37	-1	known	frame_shift_del	c.1157	p.L386fs	1.000	pfam_Cell_cycle_regulator_Mat89Bb	pfam_Cell_cycle_regulator_Mat89Bb	-	no_errors	ASUN	HGNC	ENSG00000064102				72	0	0	42	10	19.2308
KLHL42	0	genome.wustl.edu	37	12	27950769	27950769	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	27950769	27950769	G	-	DEL	KLHL42	ENST00000381271	human	ensembl	74_37	+1	known	frame_shift_del	c.1188	p.C399fs	0.988	NULL	pfam_Kelch_1,pfam_BACK,superfamily_BTB/POZ_fold,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL42	HGNC	ENSG00000087448				222	1	0.44843	125	83	39.9038
RHNO1	0	genome.wustl.edu	37	12	2994544	2994544	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	2994544	2994544	A	-	DEL	RHNO1	ENST00000489288	human	ensembl	74_37	+1	known	frame_shift_del	c.12	p.K6fs	0.704	NULL	NULL	-	no_errors	RHNO1	HGNC	ENSG00000171792				172	0	0	55	28	33.7349
KIF21A	0	genome.wustl.edu	37	12	39734129	39734129	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	39734129	39734129	T	-	DEL	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	frame_shift_del	c.2148	p.V717fs	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				31	0	0	28	8	22.2222
KIF21A	0	genome.wustl.edu	37	12	39745735	39745735	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	39745735	39745735	T	-	DEL	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	frame_shift_del	c.1517	p.N506fs	1.000	superfamily_ARM-type_fold	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				233	0	0	113	45	28.481
LRRK2	0	genome.wustl.edu	37	12	40697958	40697958	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	40697958	40697958	A	-	DEL	LRRK2	ENST00000343742	human	ensembl	74_37	+1	putative	frame_shift_del	c.3799	p.K1268fs	0.043	NULL	pfam_Leu-rich_rpt,superfamily_ARM-type_fold,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRK2	HGNC	ENSG00000188906				87	0	0	46	30	39.4737
LRRK2	0	genome.wustl.edu	37	12	40699672	40699673	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	40699672	40699673	-	G	INS	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	frame_shift_ins	c.3863_3864	p.K1290fs	1.000:1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				68	0	0	36	21	36.8421
RAD51AP1	0	genome.wustl.edu	37	12	4653063	4653063	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	4653063	4653063	A	-	DEL	RAD51AP1	ENST00000228843	human	ensembl	74_37	+1	known	frame_shift_del	c.202	p.R70fs	0.997	NULL	NULL	-	no_errors	RAD51AP1	HGNC	ENSG00000111247				86	0	0	36	11	23.4043
DYRK4	0	genome.wustl.edu	37	12	4719362	4719362	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	4719362	4719362	A	-	DEL	DYRK4	ENST00000010132	human	ensembl	74_37	+1	known	frame_shift_del	c.1057	p.R355fs	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219				104	0	0	42	36	46.1538
AKAP3	0	genome.wustl.edu	37	12	4736154	4736154	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	4736154	4736154	G	-	DEL	AKAP3	ENST00000228850	human	ensembl	74_37	-1	known	frame_shift_del	c.1914	p.R639fs	0.000	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254				84	0	0	41	39	48.75
NDUFA9	0	genome.wustl.edu	37	12	4794302	4794304	+	In_Frame_Del	DEL	AAA	AAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	4794302	4794304	AAA	-	DEL	NDUFA9	ENST00000540688	human	ensembl	74_37	+1	putative	in_frame_del	c.51_53	p.K20in_frame_del	0.000:0.000:0.005	NULL	NULL	-	no_errors	NDUFA9	HGNC	ENSG00000139180				9	0	0	7	7	50
HDAC7	0	genome.wustl.edu	37	12	48189044	48189045	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	48189044	48189045	-	G	INS	HDAC7	ENST00000380610	human	ensembl	74_37	-1	known	frame_shift_ins	c.1258_1257	p.S419fs	1.000:0.999	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC7	HGNC	ENSG00000061273				107	0	0	54	39	41.9355
WNT1	0	genome.wustl.edu	37	12	49374348	49374348	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	49374348	49374348	G	-	DEL	WNT1	ENST00000293549	human	ensembl	74_37	+1	known	frame_shift_del	c.500	p.G169fs	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt1	-	no_errors	WNT1	HGNC	ENSG00000125084				25	0	0	15	9	37.5
KMT2D	0	genome.wustl.edu	37	12	49445526	49445526	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	49445526	49445526	G	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.1940	p.P647fs	0.001	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				139	1	0.714286	73	12	14.1176
TUBA1B	0	genome.wustl.edu	37	12	49523373	49523375	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	49523373	49523375	CTC	-	DEL	TUBA1B	ENST00000336023	human	ensembl	74_37	-1	known	in_frame_del	c.136_134	p.G45in_frame_del	1.000:1.000:1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1B	HGNC	ENSG00000123416				220	0	0	141	34	19.4286
KRT75	0	genome.wustl.edu	37	12	52827736	52827736	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	52827736	52827736	G	-	DEL	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	frame_shift_del	c.353	p.P118fs	0.970	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				144	0	0	85	21	19.8113
SMARCC2	0	genome.wustl.edu	37	12	56557535	56557535	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	56557535	56557535	G	-	DEL	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	frame_shift_del	c.3583	p.L1195fs	0.939	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				52	0	0	18	18	50
SMARCC2	0	genome.wustl.edu	37	12	56559113	56559113	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	56559113	56559113	G	-	DEL	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	frame_shift_del	c.3128	p.P1043fs	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				162	0	0	71	20	21.978
LRP1	0	genome.wustl.edu	37	12	57572242	57572242	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	57572242	57572242	G	-	DEL	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	frame_shift_del	c.4462	p.E1490fs	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				142	0	0	65	43	39.8148
DCTN2	0	genome.wustl.edu	37	12	57927806	57927806	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	57927806	57927806	G	-	DEL	DCTN2	ENST00000434715	human	ensembl	74_37	-1	known	frame_shift_del	c.614	p.P205fs	0.993	NULL	NULL	-	no_errors	DCTN2	HGNC	ENSG00000175203				152	0	0	71	16	18.3908
DTX3	0	genome.wustl.edu	37	12	58001073	58001073	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	58001073	58001073	C	-	DEL	DTX3	ENST00000551632	human	ensembl	74_37	+1	known	frame_shift_del	c.436	p.L148fs	0.997	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3	HGNC	ENSG00000178498				20	0	0	12	4	25
MON2	0	genome.wustl.edu	37	12	62981846	62981846	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	62981846	62981846	T	-	DEL	MON2	ENST00000551397	human	ensembl	74_37	+1	putative	frame_shift_del	c.22	p.F9fs	0.289	NULL	NULL	-	no_errors	MON2	HGNC	ENSG00000061987				30	0	0	19	9	32.1429
DPY19L2	0	genome.wustl.edu	37	12	64055263	64055263	+	Splice_Site	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	64055263	64055263	T	-	DEL	DPY19L2	ENST00000324472	human	ensembl	74_37	-1	known	splice_site_del	c.451-2	e4-2	0.999	-	-	-	no_errors	DPY19L2	HGNC	ENSG00000177990				91	0	0	47	39	45.3488
C1S	0	genome.wustl.edu	37	12	7173239	7173239	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	7173239	7173239	A	-	DEL	C1S	ENST00000328916	human	ensembl	74_37	+1	known	frame_shift_del	c.836	p.K281fs	0.022	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	C1S	HGNC	ENSG00000182326				140	1	0.70922	58	43	42.5743
E2F7	0	genome.wustl.edu	37	12	77449858	77449858	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	77449858	77449858	T	-	DEL	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	frame_shift_del	c.146	p.N49fs	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				145	1	0.684932	84	22	20.7547
LRRIQ1	0	genome.wustl.edu	37	12	85638646	85638647	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	85638646	85638647	AA	-	DEL	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	frame_shift_del	c.5096_5097	p.N1702fs	1.000:1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				96	0	0	62	15	19.4805
ATP2B1	0	genome.wustl.edu	37	12	90013833	90013833	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	90013833	90013833	T	-	DEL	ATP2B1	ENST00000261173	human	ensembl	74_37	-1	known	frame_shift_del	c.1772	p.N591fs	1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961				127	0	0	77	27	25.9615
LUM	0	genome.wustl.edu	37	12	91497803	91497803	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	91497803	91497803	A	-	DEL	LUM	ENST00000548071	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.938	-	-	-	no_errors	LUM	HGNC	ENSG00000139329				13	0	0	4	5	55.5556
ELK3	0	genome.wustl.edu	37	12	96641028	96641029	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	12	96641028	96641029	-	C	INS	ELK3	ENST00000228741	human	ensembl	74_37	+1	known	frame_shift_ins	c.518_519	p.V176fs	0.017:0.019	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK3	HGNC	ENSG00000111145				78	0	0	59	7	10.6061
TM9SF2	0	genome.wustl.edu	37	13	100192902	100192902	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	100192902	100192902	T	-	DEL	TM9SF2	ENST00000466555	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.045	-	-	-	no_errors	TM9SF2	HGNC	ENSG00000125304				28	0	0	23	14	37.8378
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				25	0	0	17	26	60.4651
XPO4	0	genome.wustl.edu	37	13	21384005	21384005	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	21384005	21384005	A	-	DEL	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	frame_shift_del	c.1275	p.F425fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953				65	0	0	29	9	23.6842
SACS	0	genome.wustl.edu	37	13	23911843	23911843	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	23911843	23911843	A	-	DEL	SACS	ENST00000382292	human	ensembl	74_37	-1	known	frame_shift_del	c.6172	p.S2058fs	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				51	0	0	36	7	16.2791
PARP4	0	genome.wustl.edu	37	13	25030500	25030500	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	25030500	25030500	T	-	DEL	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	frame_shift_del	c.2541	p.K847fs	0.996	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				124	0	0	68	17	20
SLC46A3	0	genome.wustl.edu	37	13	29278265	29278265	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	29278265	29278265	A	-	DEL	SLC46A3	ENST00000475385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC46A3	HGNC	ENSG00000139508				62	0	0	25	17	40.4762
HMGB1	0	genome.wustl.edu	37	13	31037599	31037600	+	RNA	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	31037599	31037600	-	T	INS	HMGB1	ENST00000468384	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	HMGB1	HGNC	ENSG00000189403				83	0	0	94	25	21.0084
MEDAG	0	genome.wustl.edu	37	13	31480852	31480852	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	31480852	31480852	G	-	DEL	MEDAG	ENST00000380482	human	ensembl	74_37	+1	known	frame_shift_del	c.200	p.G69fs	0.590	NULL	NULL	-	no_errors	MEDAG	HGNC	ENSG00000102802				8	0	0	7	6	46.1538
BRCA2	0	genome.wustl.edu	37	13	32953632	32953633	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	32953632	32953633	-	A	INS	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	frame_shift_ins	c.8933_8934	p.E2981fs	0.001:0.008	superfamily_NA-bd_OB-fold,pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				151	0	0	65	11	14.4737
BRCA2	0	genome.wustl.edu	37	13	32954272	32954273	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	32954272	32954273	-	A	INS	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	frame_shift_ins	c.9246_9247	p.T3084fs	0.973:1.000	pfam_BRCA2_OB_3,superfamily_NA-bd_OB-fold,pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				59	0	0	33	15	31.25
SPG20	0	genome.wustl.edu	37	13	36909426	36909426	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	36909426	36909426	C	-	DEL	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	frame_shift_del	c.542	p.G181fs	1.000	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				128	0	0	74	15	16.8539
ELF1	0	genome.wustl.edu	37	13	41556277	41556277	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	41556277	41556277	A	-	DEL	ELF1	ENST00000498824	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ELF1	HGNC	ENSG00000120690				32	0	0	28	12	30
MTRF1	0	genome.wustl.edu	37	13	41826691	41826691	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	41826691	41826691	A	-	DEL	MTRF1	ENST00000239852	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTRF1	HGNC	ENSG00000120662				11	0	0	15	10	40
EBPL	0	genome.wustl.edu	37	13	50235209	50235210	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	50235209	50235210	AA	-	DEL	EBPL	ENST00000242827	human	ensembl	74_37	-1	known	frame_shift_del	c.516_515	p.F172fs	0.997:1.000	pfam_EBP	pfam_EBP	-	no_errors	EBPL	HGNC	ENSG00000123179				92	0	0	58	11	15.942
VPS36	0	genome.wustl.edu	37	13	52999942	52999942	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	52999942	52999942	A	-	DEL	VPS36	ENST00000492650	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	VPS36	HGNC	ENSG00000136100				20	0	0	11	8	42.1053
CKAP2	0	genome.wustl.edu	37	13	53049034	53049034	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	53049034	53049034	A	-	DEL	CKAP2	ENST00000378037	human	ensembl	74_37	+1	known	frame_shift_del	c.1810	p.K606fs	0.999	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108				65	0	0	47	9	16.0714
PIBF1	0	genome.wustl.edu	37	13	73428254	73428254	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	73428254	73428254	A	-	DEL	PIBF1	ENST00000326291	human	ensembl	74_37	+1	known	frame_shift_del	c.1283	p.K429fs	1.000	NULL	superfamily_t-SNARE	-	no_errors	PIBF1	HGNC	ENSG00000083535				114	0	0	70	18	20.4545
ENSG00000261553	0	genome.wustl.edu	37	13	76379967	76379967	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	76379967	76379967	T	-	DEL	ENSG00000261553	ENST00000563635	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-29G8.3	Clone_based_vega_gene	ENSG00000261553				175	0	0	111	30	21.2766
MYCBP2	0	genome.wustl.edu	37	13	77671704	77671705	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	77671704	77671705	-	T	INS	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	frame_shift_ins	c.9585_9584	p.K3196fs	1.000:1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				74	0	0	43	16	27.1186
PTMAP5	0	genome.wustl.edu	37	13	82265098	82265098	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	82265098	82265098	T	-	DEL	PTMAP5	ENST00000607242	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTMAP5	HGNC	ENSG00000214182				166	0	0	64	11	14.6667
SLITRK5	0	genome.wustl.edu	37	13	88329586	88329586	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	88329586	88329586	C	-	DEL	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	frame_shift_del	c.1943	p.A650fs	0.887	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				116	1	0.854701	89	23	20.5357
DCT	0	genome.wustl.edu	37	13	95095734	95095734	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	13	95095734	95095734	A	-	DEL	DCT	ENST00000446125	human	ensembl	74_37	-1	known	frame_shift_del	c.1436	p.L479fs	0.426	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166				113	0	0	64	13	16.8831
HSP90AA1	0	genome.wustl.edu	37	14	102548569	102548571	+	In_Frame_Del	DEL	GTC	GTC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	GTC	GTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	102548569	102548571	GTC	-	DEL	HSP90AA1	ENST00000334701	human	ensembl	74_37	-1	known	in_frame_del	c.2334_2332	p.D778in_frame_del	1.000:1.000:1.000	pirsf_Hsp90_fam,pfam_Hsp90_fam	pirsf_Hsp90_fam,pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90AA1	HGNC	ENSG00000080824				259	0	0	125	33	20.8861
CDC42BPB	0	genome.wustl.edu	37	14	103447236	103447237	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	103447236	103447237	-	T	INS	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	frame_shift_ins	c.1014_1013	p.H339fs	0.997:0.998	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752				183	0	0	64	28	30.4348
CHD8	0	genome.wustl.edu	37	14	21861700	21861702	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	21861700	21861702	GAA	-	DEL	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	in_frame_del	c.6254_6252	p.S2088in_frame_del	1.000:1.000:1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				31	0	0	8	5	38.4615
TINF2	0	genome.wustl.edu	37	14	24710896	24710897	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	24710896	24710897	-	A	INS	TINF2	ENST00000267415	human	ensembl	74_37	-1	known	frame_shift_ins	c.384_383	p.L128fs	0.025:0.024	NULL	NULL	-	no_errors	TINF2	HGNC	ENSG00000092330				20	0	0	14	14	50
NYNRIN	0	genome.wustl.edu	37	14	24884963	24884963	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	24884963	24884963	C	-	DEL	NYNRIN	ENST00000382554	human	ensembl	74_37	+1	known	frame_shift_del	c.4008	p.P1338fs	0.054	superfamily_RNaseH-like_dom	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978				270	1	0.369004	96	32	25
NYNRIN	0	genome.wustl.edu	37	14	24885916	24885917	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	24885916	24885917	AC	-	DEL	NYNRIN	ENST00000382554	human	ensembl	74_37	+1	known	frame_shift_del	c.4961_4962	p.T1657fs	1.000:1.000	superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978				76	0	0	29	9	23.6842
BAZ1A	0	genome.wustl.edu	37	14	35331423	35331423	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	35331423	35331423	T	-	DEL	BAZ1A	ENST00000360310	human	ensembl	74_37	-1	known	frame_shift_del	c.219	p.A74fs	1.000	pfam_WSTF_Acf1_Cbp146,pfscan_WSTF_Acf1_Cbp146	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604				340	1	0.293255	112	46	29.1139
FANCM	0	genome.wustl.edu	37	14	45645142	45645142	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	45645142	45645142	A	-	DEL	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	frame_shift_del	c.3185	p.S1064fs	0.612	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				49	0	0	28	16	36.3636
SOS2	0	genome.wustl.edu	37	14	50606661	50606661	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	50606661	50606661	A	-	DEL	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	frame_shift_del	c.2784	p.F928fs	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				61	0	0	22	16	42.1053
SAMD4A	0	genome.wustl.edu	37	14	55255768	55255768	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	55255768	55255768	T	-	DEL	SAMD4A	ENST00000553988	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.920	-	-	-	no_errors	SAMD4A	HGNC	ENSG00000020577				37	0	0	16	9	36
SOCS4	0	genome.wustl.edu	37	14	55510994	55510996	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	55510994	55510996	CTT	-	DEL	SOCS4	ENST00000339298	human	ensembl	74_37	+1	known	in_frame_del	c.1235_1237	p.S414in_frame_del	1.000:0.882:0.323	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS4	HGNC	ENSG00000180008				64	0	0	32	10	23.8095
FBXO34	0	genome.wustl.edu	37	14	55817461	55817461	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	55817461	55817461	A	-	DEL	FBXO34	ENST00000313833	human	ensembl	74_37	+1	known	frame_shift_del	c.353	p.I120fs	1.000	NULL	superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO34	HGNC	ENSG00000178974				100	0	0	49	10	16.9492
KIAA0586	0	genome.wustl.edu	37	14	58927797	58927797	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	58927797	58927797	A	-	DEL	KIAA0586	ENST00000556134	human	ensembl	74_37	+1	known	frame_shift_del	c.1933	p.G647fs	1.000	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578				35	0	0	17	3	15
DAAM1	0	genome.wustl.edu	37	14	59835592	59835592	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	59835592	59835592	T	-	DEL	DAAM1	ENST00000553966	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.059	-	-	-	no_errors	DAAM1	HGNC	ENSG00000100592				45	0	0	24	8	25
SNAPC1	0	genome.wustl.edu	37	14	62242911	62242911	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	62242911	62242911	T	-	DEL	SNAPC1	ENST00000216294	human	ensembl	74_37	+1	known	frame_shift_del	c.633	p.F213fs	0.961	NULL	pfam_SNAPc_SNAP43	-	no_errors	SNAPC1	HGNC	ENSG00000023608				69	0	0	31	16	34.0426
PLEKHH1	0	genome.wustl.edu	37	14	68053850	68053850	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	68053850	68053850	C	-	DEL	PLEKHH1	ENST00000329153	human	ensembl	74_37	+1	known	frame_shift_del	c.3993	p.T1334fs	0.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690				51	0	0	24	12	33.3333
ERH	0	genome.wustl.edu	37	14	69847231	69847232	+	RNA	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	69847231	69847232	-	C	INS	ERH	ENST00000216520	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.005:0.000	-	-	-	no_errors	ERH	HGNC	ENSG00000100632				161	1	0.617284	81	23	22.1154
DPF3	0	genome.wustl.edu	37	14	73190445	73190446	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	73190445	73190446	AA	-	DEL	DPF3	ENST00000556238	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.887:0.927	-	-	-	no_errors	DPF3	HGNC	ENSG00000205683				143	0	0	72	17	19.1011
ELMSAN1	0	genome.wustl.edu	37	14	74206623	74206623	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	74206623	74206623	G	-	DEL	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	frame_shift_del	c.89	p.P30fs	0.160	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				142	0	0	47	10	17.5439
ENSG00000258891	0	genome.wustl.edu	37	14	74363249	74363249	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	74363249	74363249	T	-	DEL	ENSG00000258891	ENST00000554009	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP5-1021I20.5	Clone_based_vega_gene	ENSG00000258891				113	0	0	47	7	12.963
YLPM1	0	genome.wustl.edu	37	14	75265533	75265533	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	75265533	75265533	A	-	DEL	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	frame_shift_del	c.3533	p.M1180fs	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				103	1	0.961538	39	12	23.5294
MLH3	0	genome.wustl.edu	37	14	75514338	75514338	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	75514338	75514338	T	-	DEL	MLH3	ENST00000355774	human	ensembl	74_37	-1	known	frame_shift_del	c.2021	p.N674fs	0.001	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_dom,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684				126	0	0	79	20	20.202
MLH3	0	genome.wustl.edu	37	14	75514604	75514604	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	75514604	75514604	T	-	DEL	MLH3	ENST00000355774	human	ensembl	74_37	-1	known	frame_shift_del	c.1755	p.E586fs	0.092	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_dom,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684				126	1	0.787402	75	29	27.8846
ATG2B	0	genome.wustl.edu	37	14	96788614	96788615	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	14	96788614	96788615	AA	-	DEL	ATG2B	ENST00000488421	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ATG2B	HGNC	ENSG00000066739				99	0	0	43	11	20.3704
SNORD116-6	0	genome.wustl.edu	37	15	25310193	25310193	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	25310193	25310193	A	-	DEL	SNORD116-6	ENST00000384711	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORD116-6	HGNC	ENSG00000207442				247	1	0.403226	98	39	28.4672
SNORD116-26	0	genome.wustl.edu	37	15	25344663	25344663	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	25344663	25344663	A	-	DEL	SNORD116-26	ENST00000516006	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORD116-26	HGNC	ENSG00000251815				109	0	0	51	16	23.8806
FMN1	0	genome.wustl.edu	37	15	33256350	33256350	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	33256350	33256350	T	-	DEL	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	frame_shift_del	c.2427	p.K809fs	0.994	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				167	0	0	63	21	25
ZNF770	0	genome.wustl.edu	37	15	35273805	35273807	+	In_Frame_Del	DEL	AAA	AAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	35273805	35273807	AAA	-	DEL	ZNF770	ENST00000356321	human	ensembl	74_37	-1	known	in_frame_del	c.1831_1829	p.F610in_frame_del	0.000:0.000:0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF770	HGNC	ENSG00000198146				179	0	0	75	37	33.0357
SPATA5L1	0	genome.wustl.edu	37	15	45710841	45710841	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	45710841	45710841	T	-	DEL	SPATA5L1	ENST00000305560	human	ensembl	74_37	+1	known	frame_shift_del	c.2055	p.S688fs	0.999	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	SPATA5L1	HGNC	ENSG00000171763				132	0	0	33	21	38.8889
DUT	0	genome.wustl.edu	37	15	48633714	48633714	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	48633714	48633714	A	-	DEL	DUT	ENST00000331200	human	ensembl	74_37	+1	known	frame_shift_del	c.634	p.G214fs	1.000	pfam_dUTP_pyroPase,tigrfam_dUTP_pyroPase_sf	pfam_dUTP_pyroPase,tigrfam_dUTP_pyroPase_sf	-	no_errors	DUT	HGNC	ENSG00000128951				44	0	0	30	12	28.5714
FGF7	0	genome.wustl.edu	37	15	49776643	49776644	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	49776643	49776644	-	A	INS	FGF7	ENST00000267843	human	ensembl	74_37	+1	known	frame_shift_ins	c.527_528	p.T179fs	1.000:0.929	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF7	HGNC	ENSG00000140285				68	0	0	39	7	15.2174
ENSG00000259241	0	genome.wustl.edu	37	15	51987960	51987962	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	51987960	51987962	AAA	-	DEL	ENSG00000259241	ENST00000559918	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.012:0.011	-	-	-	no_errors	RP11-313P18.2	Clone_based_vega_gene	ENSG00000259241				18	0	0	7	12	63.1579
ENSG00000259241	0	genome.wustl.edu	37	15	51987960	51987963	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	51987960	51987963	AAAA	-	DEL	ENSG00000259241	ENST00000559918	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.012:0.011:0.004	-	-	-	no_errors	RP11-313P18.2	Clone_based_vega_gene	ENSG00000259241				18	0	0	9	9	50
MYO5C	0	genome.wustl.edu	37	15	52504010	52504011	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	52504010	52504011	-	CA	INS	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	frame_shift_ins	c.4213_4212	p.R1404fs	0.988:0.525	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				229	0	0	82	32	28.0702
ENSG00000259941	0	genome.wustl.edu	37	15	56686788	56686788	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	56686788	56686788	T	-	DEL	ENSG00000259941	ENST00000564401	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	RP11-48G14.2	Clone_based_vega_gene	ENSG00000259941				13	0	0	6	4	40
MNS1	0	genome.wustl.edu	37	15	56736027	56736027	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	56736027	56736027	T	-	DEL	MNS1	ENST00000260453	human	ensembl	74_37	-1	known	frame_shift_del	c.712	p.M238fs	1.000	NULL	NULL	-	no_errors	MNS1	HGNC	ENSG00000138587				108	0	0	33	11	25
TCF12	0	genome.wustl.edu	37	15	57489983	57489984	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	57489983	57489984	-	A	INS	TCF12	ENST00000438423	human	ensembl	74_37	+1	known	frame_shift_ins	c.539_540	p.V183fs	1.000:1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF12	HGNC	ENSG00000140262				129	0	0	57	25	30.4878
ADAM10	0	genome.wustl.edu	37	15	58902544	58902544	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	58902544	58902544	T	-	DEL	ADAM10	ENST00000260408	human	ensembl	74_37	-1	known	frame_shift_del	c.1977	p.A660fs	0.999	NULL	pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM10	HGNC	ENSG00000137845				165	0	0	55	11	16.6667
FAM63B	0	genome.wustl.edu	37	15	59146784	59146784	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	59146784	59146784	A	-	DEL	FAM63B	ENST00000559228	human	ensembl	74_37	+1	known	frame_shift_del	c.1841	p.N616fs	1.000	NULL	pfam_DUF544	-	no_errors	FAM63B	HGNC	ENSG00000128923				118	0	0	34	23	40.3509
TIPIN	0	genome.wustl.edu	37	15	66672095	66672095	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	66672095	66672095	T	-	DEL	TIPIN	ENST00000561773	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	TIPIN	HGNC	ENSG00000075131				83	0	0	38	13	25.4902
KIAA1024	0	genome.wustl.edu	37	15	79750586	79750586	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	79750586	79750586	A	-	DEL	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	frame_shift_del	c.2097	p.S702fs	0.527	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				219	0	0	82	36	30.5085
EFTUD1	0	genome.wustl.edu	37	15	82519819	82519819	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	82519819	82519819	A	-	DEL	EFTUD1	ENST00000268206	human	ensembl	74_37	-1	known	frame_shift_del	c.1164	p.P389fs	0.991	superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_EFG_III-V,superfamily_Transl_B-barrel,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598				168	1	0.591716	76	31	28.972
KIF7	0	genome.wustl.edu	37	15	90190209	90190209	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	90190209	90190209	C	-	DEL	KIF7	ENST00000394412	human	ensembl	74_37	-1	known	frame_shift_del	c.1640	p.G547fs	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813				41	0	0	20	7	25.9259
SLCO3A1	0	genome.wustl.edu	37	15	92706441	92706441	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	92706441	92706441	A	-	DEL	SLCO3A1	ENST00000555549	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.813	-	-	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				63	0	0	16	14	46.6667
RGMA	0	genome.wustl.edu	37	15	93595208	93595208	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	93595208	93595208	C	-	DEL	RGMA	ENST00000556087	human	ensembl	74_37	-1	putative	frame_shift_del	c.612	p.R205fs	0.000	NULL	pfam_RGM_N	-	no_errors	RGMA	HGNC	ENSG00000182175				16	0	0	4	3	42.8571
SPATA8	0	genome.wustl.edu	37	15	97328285	97328286	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	15	97328285	97328286	-	C	INS	SPATA8	ENST00000328504	human	ensembl	74_37	+1	known	frame_shift_ins	c.256_257	p.L88fs	0.000:0.000	NULL	NULL	-	no_errors	SPATA8	HGNC	ENSG00000185594				180	0	0	92	27	22.6891
TVP23A	0	genome.wustl.edu	37	16	10867203	10867203	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	10867203	10867203	A	-	DEL	TVP23A	ENST00000299866	human	ensembl	74_37	-1	known	frame_shift_del	c.420	p.F140fs	1.000	pfam_DUF846_euk	pfam_DUF846_euk	-	no_errors	TVP23A	HGNC	ENSG00000166676				120	0	0	31	16	34.0426
CLEC16A	0	genome.wustl.edu	37	16	11141159	11141159	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	11141159	11141159	T	-	DEL	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	frame_shift_del	c.1826	p.L611fs	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532				47	0	0	12	3	20
ZC3H7A	0	genome.wustl.edu	37	16	11864672	11864674	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	11864672	11864674	AAG	-	DEL	ZC3H7A	ENST00000355758	human	ensembl	74_37	-1	known	in_frame_del	c.1075_1073	p.S358in_frame_del	1.000:1.000:1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299				154	0	0	39	18	31.5789
FAHD1	0	genome.wustl.edu	37	16	1877706	1877707	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	1877706	1877707	-	G	INS	FAHD1	ENST00000382666	human	ensembl	74_37	+1	known	frame_shift_ins	c.476_477	p.E161fs	0.994:0.993	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD1	HGNC	ENSG00000180185				67	0	0	31	12	27.907
ATXN2L	0	genome.wustl.edu	37	16	28847350	28847350	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	28847350	28847350	G	-	DEL	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	frame_shift_del	c.2992	p.1002fs	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				202	0	0	78	27	25.7143
FAM57B	0	genome.wustl.edu	37	16	30041821	30041821	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	30041821	30041821	C	-	DEL	FAM57B	ENST00000380495	human	ensembl	74_37	-1	known	frame_shift_del	c.28	p.V10fs	1.000	NULL	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	FAM57B	HGNC	ENSG00000149926				35	0	0	12	2	14.2857
HCFC1R1	0	genome.wustl.edu	37	16	3073266	3073266	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	3073266	3073266	G	-	DEL	HCFC1R1	ENST00000248089	human	ensembl	74_37	-1	known	frame_shift_del	c.249	p.M84fs	0.001	NULL	NULL	-	no_errors	HCFC1R1	HGNC	ENSG00000103145				111	0	0	43	12	21.8182
THOC6	0	genome.wustl.edu	37	16	3075953	3075954	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	3075953	3075954	AA	-	DEL	THOC6	ENST00000326266	human	ensembl	74_37	+1	known	frame_shift_del	c.184_185	p.K62fs	1.000:1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	THOC6	HGNC	ENSG00000131652				255	0	0	75	39	34.2105
MMP25	0	genome.wustl.edu	37	16	3108634	3108634	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	3108634	3108634	C	-	DEL	MMP25	ENST00000336577	human	ensembl	74_37	+1	known	frame_shift_del	c.1381	p.S463fs	1.000	pirsf_Pept_M10A_Metazoans,superfamily_Hemopexin-like_dom	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP25	HGNC	ENSG00000008516				27	0	0	5	3	37.5
PRSS36	0	genome.wustl.edu	37	16	31151942	31151942	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	31151942	31151942	G	-	DEL	PRSS36	ENST00000268281	human	ensembl	74_37	-1	known	frame_shift_del	c.2038	p.L680fs	0.448	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS36	HGNC	ENSG00000178226				35	0	0	21	4	16
OR1F1	0	genome.wustl.edu	37	16	3254715	3254717	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	3254715	3254717	CTT	-	DEL	OR1F1	ENST00000304646	human	ensembl	74_37	+1	known	in_frame_del	c.469_471	p.L158in_frame_del	0.306:0.307:0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1F1	HGNC	ENSG00000168124				204	0	0	110	37	25.1701
LOC100134368	0	genome.wustl.edu	37	16	436712	436714	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	436712	436714	AAA	-	DEL	LOC100134368	ENST00000457760	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001:0.000	-	-	-	no_errors	Z97634.3	Clone_based_vega_gene	ENSG00000236829				20	0	0	20	6	23.0769
ABCC11	0	genome.wustl.edu	37	16	48264405	48264405	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	48264405	48264405	G	-	DEL	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	frame_shift_del	c.179	p.P60fs	0.001	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				55	0	0	21	2	8.69565
ADCY7	0	genome.wustl.edu	37	16	50338374	50338374	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	50338374	50338374	G	-	DEL	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	frame_shift_del	c.1472	p.A493fs	1.000	pfam_Adenylate_cyclase-like	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281				134	0	0	62	17	21.519
NKD1	0	genome.wustl.edu	37	16	50667134	50667135	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	50667134	50667135	-	C	INS	NKD1	ENST00000268459	human	ensembl	74_37	+1	known	frame_shift_ins	c.855_856	p.R287fs	1.000:1.000	NULL	pfscan_EF_hand_dom	-	no_errors	NKD1	HGNC	ENSG00000140807				143	0	0	60	17	22.0779
SALL1	0	genome.wustl.edu	37	16	51175930	51175930	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	51175930	51175930	T	-	DEL	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	frame_shift_del	c.203	p.N68fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				224	0	0	59	35	37.234
HERPUD1	0	genome.wustl.edu	37	16	56969317	56969317	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	56969317	56969317	A	-	DEL	HERPUD1	ENST00000439977	human	ensembl	74_37	+1	known	frame_shift_del	c.230	p.K78fs	0.999	pfam_Ubiquitin_dom,smart_Ubiquitin_dom	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	HERPUD1	HGNC	ENSG00000051108				126	0	0	77	30	28.0374
CNOT1	0	genome.wustl.edu	37	16	58589340	58589340	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	58589340	58589340	A	-	DEL	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	frame_shift_del	c.2706	p.Q904fs	0.995	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				225	0	0	89	29	24.5763
CTCF	0	genome.wustl.edu	37	16	67645339	67645339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	67645339	67645339	A	-	DEL	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.T204fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				144	0	0	55	22	28.5714
DHX38	0	genome.wustl.edu	37	16	72137034	72137036	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	72137034	72137036	AAG	-	DEL	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	in_frame_del	c.1561_1563	p.K523in_frame_del	0.998:1.000:0.999	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				141	0	0	53	13	19.697
ZFHX3	0	genome.wustl.edu	37	16	72830902	72830903	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	72830902	72830903	-	CT	INS	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	frame_shift_ins	c.5679_5678	p.D1894fs	0.999:0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				93	0	0	42	12	22.2222
ADAT1	0	genome.wustl.edu	37	16	75634035	75634035	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	75634035	75634035	A	-	DEL	ADAT1	ENST00000568478	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.133	-	-	-	no_errors	ADAT1	HGNC	ENSG00000065457				111	0	0	40	17	29.8246
TLDC1	0	genome.wustl.edu	37	16	84514303	84514303	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	84514303	84514303	C	-	DEL	TLDC1	ENST00000343629	human	ensembl	74_37	-1	known	frame_shift_del	c.1089	p.Q364fs	0.148	pfam_TLDc,smart_TLDc	pfam_TLDc,smart_TLDc	-	no_errors	TLDC1	HGNC	ENSG00000140950				81	0	0	36	16	30.7692
FAM92B	0	genome.wustl.edu	37	16	85135923	85135924	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	85135923	85135924	-	A	INS	FAM92B	ENST00000539556	human	ensembl	74_37	-1	known	frame_shift_ins	c.548_547	p.C183fs	0.000:0.000	pfam_FAM92	pfam_FAM92	-	no_errors	FAM92B	HGNC	ENSG00000153789				80	0	0	28	14	33.3333
ZC3H18	0	genome.wustl.edu	37	16	88691141	88691141	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	88691141	88691141	C	-	DEL	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	frame_shift_del	c.2030	p.R680fs	0.568	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				49	0	0	12	4	25
VPS9D1	0	genome.wustl.edu	37	16	89778932	89778933	+	Splice_Site	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	89778932	89778933	-	G	INS	VPS9D1	ENST00000389386	human	ensembl	74_37	-1	known	splice_site_ins	c.544-3_544-2	e6-2	0.999:0.042	-	-	-	no_errors	VPS9D1	HGNC	ENSG00000075399				122	1	0.813008	28	11	28.2051
USP7	0	genome.wustl.edu	37	16	9000392	9000392	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	16	9000392	9000392	G	-	DEL	USP7	ENST00000344836	human	ensembl	74_37	-1	known	frame_shift_del	c.1319	p.T440fs	0.997	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555				83	0	0	35	10	22.2222
MYH1	0	genome.wustl.edu	37	17	10408152	10408152	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	10408152	10408152	T	-	DEL	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	frame_shift_del	c.2666	p.N889fs	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				89	0	0	35	18	33.9623
LOC100128006	0	genome.wustl.edu	37	17	12663850	12663850	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	12663850	12663850	A	-	DEL	LOC100128006	ENST00000584772	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-1090M7.1	Clone_based_vega_gene	ENSG00000265489				9	0	0	7	3	30
CRK	0	genome.wustl.edu	37	17	1326755	1326757	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	1326755	1326757	AAA	-	DEL	CRK	ENST00000572145	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.352:0.023:0.010	-	-	-	no_errors	CRK	HGNC	ENSG00000167193				55	0	0	21	17	44.7368
NT5M	0	genome.wustl.edu	37	17	17250190	17250190	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	17250190	17250190	C	-	DEL	NT5M	ENST00000389022	human	ensembl	74_37	+1	known	frame_shift_del	c.616	p.R208fs	1.000	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	-	no_errors	NT5M	HGNC	ENSG00000205309				105	0	0	27	14	34.1463
SPECC1	0	genome.wustl.edu	37	17	20108263	20108263	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	20108263	20108263	A	-	DEL	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	frame_shift_del	c.901	p.N303fs	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				228	0	0	46	79	63.2
METTL16	0	genome.wustl.edu	37	17	2371076	2371076	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	2371076	2371076	A	-	DEL	METTL16	ENST00000263092	human	ensembl	74_37	-1	known	frame_shift_del	c.564	p.F188fs	0.999	pfam_rRNA_lsu_MeTfrase_F-like,pirsf_S-AdoMet-dep_MeTrfase_Mett10D	pfam_rRNA_lsu_MeTfrase_F-like,pirsf_S-AdoMet-dep_MeTrfase_Mett10D	-	no_errors	METTL16	HGNC	ENSG00000127804				158	0	0	96	6	5.88235
PAFAH1B1	0	genome.wustl.edu	37	17	2570628	2570628	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	2570628	2570628	A	-	DEL	PAFAH1B1	ENST00000397193	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168				9	0	0	10	2	16.6667
CLUH	0	genome.wustl.edu	37	17	2604055	2604055	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	2604055	2604055	G	-	DEL	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	frame_shift_del	c.976	p.Q326fs	1.000	NULL	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361				83	0	0	27	10	27.027
FOXN1	0	genome.wustl.edu	37	17	26854365	26854365	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	26854365	26854365	C	-	DEL	FOXN1	ENST00000226247	human	ensembl	74_37	+1	known	frame_shift_del	c.685	p.F231fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN1	HGNC	ENSG00000109101				34	0	0	16	6	27.2727
PROCA1	0	genome.wustl.edu	37	17	27030601	27030601	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	27030601	27030601	G	-	DEL	PROCA1	ENST00000439862	human	ensembl	74_37	-1	known	frame_shift_del	c.992	p.P331fs	1.000	NULL	pfam_PLipase_A2,superfamily_PLipase_A2_dom	-	no_errors	PROCA1	HGNC	ENSG00000167525				227	0	0	86	20	18.8679
FAM222B	0	genome.wustl.edu	37	17	27086258	27086258	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	27086258	27086258	G	-	DEL	FAM222B	ENST00000341217	human	ensembl	74_37	-1	known	frame_shift_del	c.719	p.P240fs	1.000	NULL	NULL	-	no_errors	FAM222B	HGNC	ENSG00000173065				51	0	0	16	4	20
ENSG00000265289	0	genome.wustl.edu	37	17	28386481	28386482	+	RNA	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	28386481	28386482	-	T	INS	ENSG00000265289	ENST00000583250	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC104984.4	Clone_based_vega_gene	ENSG00000265289				51	0	0	23	8	25.8065
ENSG00000224113	0	genome.wustl.edu	37	17	33332660	33332660	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	33332660	33332660	T	-	DEL	ENSG00000224113	ENST00000415412	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	RP5-837J1.2	Clone_based_vega_gene	ENSG00000224113				54	0	0	23	16	41.0256
SLFN5	0	genome.wustl.edu	37	17	33592101	33592101	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	33592101	33592101	A	-	DEL	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	frame_shift_del	c.1870	p.N625fs	0.038	pfam_DUF2075,superfamily_P-loop_NTPase	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750				126	0	0	67	20	22.9885
SLFN13	0	genome.wustl.edu	37	17	33768996	33768996	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	33768996	33768996	C	-	DEL	SLFN13	ENST00000285013	human	ensembl	74_37	-1	known	frame_shift_del	c.1508	p.G503fs	0.052	NULL	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN13	HGNC	ENSG00000154760				134	0	0	64	9	12.3288
LHX1	0	genome.wustl.edu	37	17	35300395	35300395	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	35300395	35300395	C	-	DEL	LHX1	ENST00000254457	human	ensembl	74_37	+1	known	frame_shift_del	c.1188	p.E399fs	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX1	HGNC	ENSG00000132130				39	0	0	12	6	33.3333
ENSG00000272191	0	genome.wustl.edu	37	17	35300495	35300497	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	35300495	35300497	AAA	-	DEL	ENSG00000272191	ENST00000607336	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.027:0.005:0.001	-	-	-	no_errors	RP11-445F12.2	Clone_based_vega_gene	ENSG00000272191				24	0	0	5	6	54.5455
HNF1B	0	genome.wustl.edu	37	17	36059173	36059174	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	36059173	36059174	-	G	INS	HNF1B	ENST00000225893	human	ensembl	74_37	-1	known	frame_shift_ins	c.1562_1561	p.Q521fs	1.000:1.000	pfam_HNF1b_C	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1B	HGNC	ENSG00000108753				102	0	0	33	10	23.2558
GPR179	0	genome.wustl.edu	37	17	36485586	36485586	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	36485586	36485586	T	-	DEL	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	frame_shift_del	c.3866	p.K1289fs	0.000	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888				82	0	0	41	16	28.0702
GRB7	0	genome.wustl.edu	37	17	37898534	37898535	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	37898534	37898535	CC	-	DEL	GRB7	ENST00000445327	human	ensembl	74_37	+1	known	frame_shift_del	c.49_50	p.S19fs	0.000:0.000	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB7	HGNC	ENSG00000141738				458	0	0	159	33	17.1875
KRT24	0	genome.wustl.edu	37	17	38859835	38859836	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	38859835	38859836	-	C	INS	KRT24	ENST00000264651	human	ensembl	74_37	-1	known	frame_shift_ins	c.111_110	p.S38fs	0.003:0.984	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT24	HGNC	ENSG00000167916				129	0	0	67	21	23.8636
NAGLU	0	genome.wustl.edu	37	17	40690427	40690427	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	40690427	40690427	G	-	DEL	NAGLU	ENST00000225927	human	ensembl	74_37	+1	known	frame_shift_del	c.602	p.R203fs	1.000	pfam_NAGLU_tim-barrel,superfamily_Glycoside_hydrolase_SF	pfam_NAGLU_tim-barrel,superfamily_Glycoside_hydrolase_SF	-	no_errors	NAGLU	HGNC	ENSG00000108784				241	0	0	110	30	21.4286
CCDC43	0	genome.wustl.edu	37	17	42756253	42756253	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	42756253	42756253	T	-	DEL	CCDC43	ENST00000315286	human	ensembl	74_37	-1	known	frame_shift_del	c.646	p.R216fs	1.000	NULL	NULL	-	no_errors	CCDC43	HGNC	ENSG00000180329				61	0	0	22	6	21.4286
GJC1	0	genome.wustl.edu	37	17	42882323	42882323	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	42882323	42882323	G	-	DEL	GJC1	ENST00000330514	human	ensembl	74_37	-1	known	frame_shift_del	c.863	p.P288fs	1.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin45	-	no_errors	GJC1	HGNC	ENSG00000182963				294	1	0.338983	136	39	22.2857
ENSG00000233175	0	genome.wustl.edu	37	17	43317770	43317770	+	RNA	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	43317770	43317770	G	-	DEL	ENSG00000233175	ENST00000393507	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.028	-	-	-	no_errors	CTD-2020K17.3	Clone_based_vega_gene	ENSG00000233175				35	0	0	20	9	31.0345
GP1BA	0	genome.wustl.edu	37	17	4837373	4837373	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	4837373	4837373	A	-	DEL	GP1BA	ENST00000329125	human	ensembl	74_37	+1	known	frame_shift_del	c.1474	p.T494fs	0.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP1BA	HGNC	ENSG00000185245				179	1	0.555556	49	18	26.8657
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				145	1	0.684932	54	20	27.027
COIL	0	genome.wustl.edu	37	17	55028015	55028016	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	55028015	55028016	-	T	INS	COIL	ENST00000240316	human	ensembl	74_37	-1	known	frame_shift_ins	c.588_587	p.A197fs	0.024:0.030	NULL	NULL	-	no_errors	COIL	HGNC	ENSG00000121058				137	0	0	90	27	23.0769
RNF43	0	genome.wustl.edu	37	17	56448297	56448298	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	56448297	56448298	-	G	INS	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_ins	c.350_349	p.R117fs	1.000:1.000	superfamily_PAS	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				121	0	0	46	9	16.3636
TBX4	0	genome.wustl.edu	37	17	59560345	59560345	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	59560345	59560345	C	-	DEL	TBX4	ENST00000393853	human	ensembl	74_37	+1	known	frame_shift_del	c.1109	p.P372fs	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075				57	0	0	34	13	27.6596
STRADA	0	genome.wustl.edu	37	17	61781804	61781804	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	61781804	61781804	G	-	DEL	STRADA	ENST00000336174	human	ensembl	74_37	-1	known	frame_shift_del	c.997	p.R333fs	0.626	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STRADA	HGNC	ENSG00000266173				78	0	0	40	15	27.2727
SCN4A	0	genome.wustl.edu	37	17	62038770	62038770	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	62038770	62038770	T	-	DEL	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	frame_shift_del	c.1628	p.K543fs	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				360	0	0	110	38	25.6757
CEP95	0	genome.wustl.edu	37	17	62517549	62517549	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	62517549	62517549	A	-	DEL	CEP95	ENST00000556440	human	ensembl	74_37	+1	known	frame_shift_del	c.619	p.A209fs	0.255	NULL	superfamily_CH-domain	-	no_errors	CEP95	HGNC	ENSG00000258890				41	0	0	25	7	21.875
AMZ2P1	0	genome.wustl.edu	37	17	62969193	62969193	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	62969193	62969193	A	-	DEL	AMZ2P1	ENST00000397713	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	AMZ2P1	HGNC	ENSG00000214174				12	0	0	11	4	26.6667
SLC13A5	0	genome.wustl.edu	37	17	6596457	6596457	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	6596457	6596457	G	-	DEL	SLC13A5	ENST00000433363	human	ensembl	74_37	-1	known	frame_shift_del	c.1181	p.P394fs	0.480	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A5	HGNC	ENSG00000141485				56	0	0	25	4	13.7931
SLC16A11	0	genome.wustl.edu	37	17	6945482	6945482	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	6945482	6945482	C	-	DEL	SLC16A11	ENST00000308009	human	ensembl	74_37	-1	known	frame_shift_del	c.1019	p.G340fs	0.191	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A11	HGNC	ENSG00000174326				11	0	0	5	5	50
SDK2	0	genome.wustl.edu	37	17	71394281	71394282	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	71394281	71394282	-	G	INS	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	frame_shift_ins	c.3247_3246	p.S1082fs	1.000:1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188				97	0	0	36	8	18.1818
SRP68	0	genome.wustl.edu	37	17	74068528	74068530	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	74068528	74068530	GCC	-	DEL	SRP68	ENST00000307877	human	ensembl	74_37	-1	known	in_frame_del	c.45_43	p.G15in_frame_del	0.001:0.005:0.001	NULL	NULL	-	no_errors	SRP68	HGNC	ENSG00000167881				54	0	0	67	4	5.6338
SNHG16	0	genome.wustl.edu	37	17	74557821	74557821	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	74557821	74557821	T	-	DEL	SNHG16	ENST00000591956	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG16	HGNC	ENSG00000163597				56	0	0	23	2	8
MXRA7	0	genome.wustl.edu	37	17	74684316	74684316	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	74684316	74684316	G	-	DEL	MXRA7	ENST00000592148	human	ensembl	74_37	-1	putative	frame_shift_del	c.414	p.T139fs	0.000	NULL	NULL	-	no_errors	MXRA7	HGNC	ENSG00000182534				29	0	0	12	5	29.4118
TMC8	0	genome.wustl.edu	37	17	76134254	76134256	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	76134254	76134256	CTT	-	DEL	TMC8	ENST00000318430	human	ensembl	74_37	+1	known	in_frame_del	c.1518_1520	p.F507in_frame_del	0.999:1.000:1.000	pfam_TMC	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895				102	0	0	44	23	34.3284
BIRC5	0	genome.wustl.edu	37	17	76210416	76210416	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	76210416	76210416	C	-	DEL	BIRC5	ENST00000301633	human	ensembl	74_37	+1	known	frame_shift_del	c.19	p.P8fs	0.983	NULL	pfam_BIR,smart_BIR,pfscan_BIR	-	no_errors	BIRC5	HGNC	ENSG00000089685				44	0	0	21	5	19.2308
DNAH2	0	genome.wustl.edu	37	17	7678253	7678253	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	7678253	7678253	A	-	DEL	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	frame_shift_del	c.4678	p.K1561fs	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				83	0	0	49	15	23.4375
DNAH2	0	genome.wustl.edu	37	17	7678590	7678591	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	7678590	7678591	-	G	INS	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	frame_shift_ins	c.4751_4752	p.M1586fs	0.694:0.707	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				33	0	0	20	6	23.0769
ENSG00000267601	0	genome.wustl.edu	37	17	76851711	76851711	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	76851711	76851711	T	-	DEL	ENSG00000267601	ENST00000587434	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.655	-	-	-	no_errors	RP11-323N12.5	Clone_based_vega_gene	ENSG00000267601				29	0	0	12	6	33.3333
CANT1	0	genome.wustl.edu	37	17	76993149	76993149	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	76993149	76993149	C	-	DEL	CANT1	ENST00000302345	human	ensembl	74_37	-1	known	frame_shift_del	c.556	p.V186fs	1.000	pfam_Apyrase,superfamily_Apyrase	pfam_Apyrase,superfamily_Apyrase	-	no_errors	CANT1	HGNC	ENSG00000171302				334	1	0.298507	163	53	24.537
CBX4	0	genome.wustl.edu	37	17	77808241	77808243	+	In_Frame_Del	DEL	GTG	GTG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	GTG	GTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	77808241	77808243	GTG	-	DEL	CBX4	ENST00000269397	human	ensembl	74_37	-1	known	in_frame_del	c.1200_1198	p.H400in_frame_del	0.632:0.816:0.840	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,prints_Chromo_dom_subgr,pfscan_Chromo_domain/shadow	-	no_errors	CBX4	HGNC	ENSG00000141582				14	0	0	6	6	50
ENSG00000260005	0	genome.wustl.edu	37	17	79205498	79205498	+	RNA	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	79205498	79205498	G	-	DEL	ENSG00000260005	ENST00000575922	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AC027601.1	Clone_based_vega_gene	ENSG00000260005				20	0	0	11	6	35.2941
BAHCC1	0	genome.wustl.edu	37	17	79409593	79409593	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	79409593	79409593	C	-	DEL	BAHCC1	ENST00000307745	human	ensembl	74_37	+1	known	frame_shift_del	c.1218	p.F408fs	0.955	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	RP11-1055B8.7	Clone_based_vega_gene	ENSG00000171282				42	0	0	18	6	25
CTC1	0	genome.wustl.edu	37	17	8141829	8141829	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	8141829	8141829	G	-	DEL	CTC1	ENST00000315684	human	ensembl	74_37	-1	known	frame_shift_del	c.316	p.L106fs	0.360	NULL	NULL	-	no_errors	CTC1	HGNC	ENSG00000178971				191	0	0	79	35	30.7018
PFAS	0	genome.wustl.edu	37	17	8172400	8172400	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	8172400	8172400	G	-	DEL	PFAS	ENST00000314666	human	ensembl	74_37	+1	known	frame_shift_del	c.3835	p.G1280fs	0.966	tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921				129	0	0	41	23	35.9375
RCVRN	0	genome.wustl.edu	37	17	9801335	9801336	+	RNA	INS	-	-	TG			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	17	9801335	9801336	-	TG	INS	RCVRN	ENST00000570909	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RCVRN	HGNC	ENSG00000109047				64	0	0	49	13	20.9677
CXADRP3	0	genome.wustl.edu	37	18	14478662	14478662	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	14478662	14478662	T	-	DEL	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.487	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766				40	0	0	32	7	17.9487
RBBP8	0	genome.wustl.edu	37	18	20572907	20572908	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	20572907	20572908	-	A	INS	RBBP8	ENST00000327155	human	ensembl	74_37	+1	known	frame_shift_ins	c.1117_1118	p.T375fs	0.966:0.962	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773				155	0	0	67	14	17.284
DSC2	0	genome.wustl.edu	37	18	28669460	28669461	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	28669460	28669461	TC	-	DEL	DSC2	ENST00000280904	human	ensembl	74_37	-1	known	frame_shift_del	c.572_571	p.D191fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755				114	0	0	45	12	21.0526
ENSG00000263606	0	genome.wustl.edu	37	18	2946534	2946534	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	2946534	2946534	T	-	DEL	ENSG00000263606	ENST00000581139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.978	-	-	-	no_errors	RP11-737O24.3	Clone_based_vega_gene	ENSG00000263606				34	0	0	14	5	26.3158
COLEC12	0	genome.wustl.edu	37	18	331763	331763	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	331763	331763	T	-	DEL	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	frame_shift_del	c.1968	p.K656fs	0.873	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				38	0	0	13	9	40.9091
SYT4	0	genome.wustl.edu	37	18	40857246	40857246	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	40857246	40857246	T	-	DEL	SYT4	ENST00000255224	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872				111	0	0	32	16	33.3333
PIAS2	0	genome.wustl.edu	37	18	44470593	44470593	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	44470593	44470593	T	-	DEL	PIAS2	ENST00000585916	human	ensembl	74_37	-1	known	frame_shift_del	c.449	p.N150fs	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS2	HGNC	ENSG00000078043				72	0	0	21	14	40
ZBTB7C	0	genome.wustl.edu	37	18	45567076	45567076	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	45567076	45567076	C	-	DEL	ZBTB7C	ENST00000332053	human	ensembl	74_37	-1	known	frame_shift_del	c.403	p.E135fs	0.994	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828				42	0	0	22	14	38.8889
ENSG00000267040	0	genome.wustl.edu	37	18	55335787	55335789	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	55335787	55335789	AAA	-	DEL	ENSG00000267040	ENST00000592201	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	RP11-35G9.3	Clone_based_vega_gene	ENSG00000267040				32	0	0	27	3	10
LMAN1	0	genome.wustl.edu	37	18	57013284	57013285	+	Splice_Site	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	57013284	57013285	-	T	INS	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	splice_site_ins	c.823-2_823-1	e8-1	1.000:1.000	-	-	-	no_errors	LMAN1	HGNC	ENSG00000074695				184	1	0.540541	84	27	24.3243
SERPINB10	0	genome.wustl.edu	37	18	61584738	61584739	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	61584738	61584739	-	A	INS	SERPINB10	ENST00000238508	human	ensembl	74_37	+1	known	frame_shift_ins	c.217_218	p.R76fs	0.991:0.998	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550				44	0	0	10	8	44.4444
CBLN2	0	genome.wustl.edu	37	18	70205457	70205457	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	70205457	70205457	C	-	DEL	CBLN2	ENST00000269503	human	ensembl	74_37	-1	known	frame_shift_del	c.629	p.G210fs	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN2	HGNC	ENSG00000141668				200	0	0	64	25	28.0899
SOGA2	0	genome.wustl.edu	37	18	8825313	8825314	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	8825313	8825314	-	C	INS	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	frame_shift_ins	c.3805_3806	p.L1271fs	0.991:0.993	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				81	0	0	32	9	21.9512
ANKRD12	0	genome.wustl.edu	37	18	9255185	9255186	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	9255185	9255186	-	A	INS	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	frame_shift_ins	c.1920_1921	p.M642fs	0.997:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				96	0	0	57	18	24
ANKRD12	0	genome.wustl.edu	37	18	9256062	9256062	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	18	9256062	9256062	A	-	DEL	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	frame_shift_del	c.2797	p.N935fs	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				23	0	0	12	6	33.3333
GRIN3B	0	genome.wustl.edu	37	19	1007861	1007861	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	1007861	1007861	C	-	DEL	GRIN3B	ENST00000234389	human	ensembl	74_37	+1	known	frame_shift_del	c.2205	p.K738fs	0.998	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN3B	HGNC	ENSG00000116032				38	0	0	9	10	52.6316
LPPR2	0	genome.wustl.edu	37	19	11470601	11470601	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	11470601	11470601	C	-	DEL	LPPR2	ENST00000591608	human	ensembl	74_37	+1	known	frame_shift_del	c.285	p.P97fs	0.998	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	DKFZP761J1410	Uniprot_gn	ENSG00000105520				61	0	0	21	9	30
RGL3	0	genome.wustl.edu	37	19	11527450	11527450	+	RNA	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	11527450	11527450	G	-	DEL	RGL3	ENST00000563436	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RGL3	HGNC	ENSG00000205517				67	0	0	50	18	26.4706
ELAVL3	0	genome.wustl.edu	37	19	11577604	11577605	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	11577604	11577605	-	C	INS	ELAVL3	ENST00000359227	human	ensembl	74_37	-1	known	frame_shift_ins	c.48_47	p.A18fs	1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361				26	0	0	11	8	42.1053
ZNF878	0	genome.wustl.edu	37	19	12155625	12155625	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	12155625	12155625	T	-	DEL	ZNF878	ENST00000602107	human	ensembl	74_37	-1	known	frame_shift_del	c.732	p.K244fs	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446				373	0	0	140	38	21.3483
ZNF443	0	genome.wustl.edu	37	19	12542364	12542364	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	12542364	12542364	A	-	DEL	ZNF443	ENST00000301547	human	ensembl	74_37	-1	known	frame_shift_del	c.622	p.W208fs	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF443	HGNC	ENSG00000180855				318	0	0	155	43	21.7172
FARSA	0	genome.wustl.edu	37	19	13039163	13039165	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	13039163	13039165	GAA	-	DEL	FARSA	ENST00000314606	human	ensembl	74_37	-1	known	in_frame_del	c.834_832	p.F278in_frame_del	1.000:1.000:1.000	pfam_Phenylalanyl-tRNA_Synthase,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_asu	pfam_Phenylalanyl-tRNA_Synthase,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_asu	-	no_errors	FARSA	HGNC	ENSG00000179115				107	0	0	31	11	26.1905
GIPC1	0	genome.wustl.edu	37	19	14593639	14593640	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	14593639	14593640	-	G	INS	GIPC1	ENST00000345425	human	ensembl	74_37	-1	known	frame_shift_ins	c.150_149	p.P51fs	0.048:0.995	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC1	HGNC	ENSG00000123159				14	0	0	9	2	18.1818
CLEC17A	0	genome.wustl.edu	37	19	14703100	14703102	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	14703100	14703102	GGA	-	DEL	CLEC17A	ENST00000417570	human	ensembl	74_37	+1	known	in_frame_del	c.207_209	p.E73in_frame_del	0.001:0.001:0.001	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC17A	HGNC	ENSG00000187912				55	0	0	14	4	22.2222
SYDE1	0	genome.wustl.edu	37	19	15224500	15224501	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	15224500	15224501	-	C	INS	SYDE1	ENST00000342784	human	ensembl	74_37	+1	known	frame_shift_ins	c.1934_1935	p.S648fs	1.000:1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137				210	0	0	74	29	28.1553
OR10H1	0	genome.wustl.edu	37	19	15918460	15918460	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	15918460	15918460	G	-	DEL	OR10H1	ENST00000334920	human	ensembl	74_37	-1	known	frame_shift_del	c.388	p.L130fs	0.952	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H1	HGNC	ENSG00000186723				133	0	0	59	17	22.3684
CHERP	0	genome.wustl.edu	37	19	16640563	16640564	+	In_Frame_Ins	INS	-	-	GCT			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	16640563	16640564	-	GCT	INS	CHERP	ENST00000546361	human	ensembl	74_37	-1	known	in_frame_ins	c.1025_1024	p.342in_frame_insQ	0.467:0.463	NULL	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872				46	0	0	19	8	29.6296
NWD1	0	genome.wustl.edu	37	19	16860457	16860457	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	16860457	16860457	C	-	DEL	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	frame_shift_del	c.1004	p.L337fs	0.000	superfamily_P-loop_NTPase	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				137	0	0	49	12	19.6721
ZNF90	0	genome.wustl.edu	37	19	20228702	20228702	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	20228702	20228702	A	-	DEL	ZNF90	ENST00000418063	human	ensembl	74_37	+1	known	frame_shift_del	c.339	p.G116fs	0.054	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988				52	0	0	20	6	23.0769
TSHZ3	0	genome.wustl.edu	37	19	31770238	31770240	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	31770238	31770240	CTG	-	DEL	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	in_frame_del	c.461_459	p.S157in_frame_del	1.000:1.000:1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				49	0	0	21	12	36.3636
MFSD12	0	genome.wustl.edu	37	19	3542859	3542859	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	3542859	3542859	G	-	DEL	MFSD12	ENST00000398558	human	ensembl	74_37	-1	known	frame_shift_del	c.1537	p.L513fs	0.004	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD12	HGNC	ENSG00000161091				96	0	0	29	16	35.5556
GIPC3	0	genome.wustl.edu	37	19	3589527	3589527	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	3589527	3589527	G	-	DEL	GIPC3	ENST00000322315	human	ensembl	74_37	+1	known	frame_shift_del	c.679	p.A229fs	0.803	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC3	HGNC	ENSG00000179855				124	0	0	43	9	17.3077
GAPDHS	0	genome.wustl.edu	37	19	36033263	36033264	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	36033263	36033264	-	A	INS	GAPDHS	ENST00000222286	human	ensembl	74_37	+1	known	frame_shift_ins	c.492_493	p.Y164fs	0.989:1.000	pirsf_GlycerAld/Erythrose_P_DH,pfam_GlycerAld_3-P_DH_NAD(P)-bd,smart_GlycerAld_3-P_DH_NAD(P)-bd,tigrfam_Glyceraldehyde-3-P_DH_1	pirsf_GlycerAld/Erythrose_P_DH,pfam_GlycerAld_3-P_DH_cat,pfam_GlycerAld_3-P_DH_NAD(P)-bd,smart_GlycerAld_3-P_DH_NAD(P)-bd,prints_GlycerAld/Erythrose_P_DH,tigrfam_Glyceraldehyde-3-P_DH_1	-	no_errors	GAPDHS	HGNC	ENSG00000105679				93	0	0	33	7	17.5
KMT2B	0	genome.wustl.edu	37	19	36223002	36223002	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	36223002	36223002	G	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_del	c.5631	p.G1879fs	0.997	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				21	0	0	6	3	33.3333
ZNF570	0	genome.wustl.edu	37	19	37974994	37974994	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	37974994	37974994	T	-	DEL	ZNF570	ENST00000330173	human	ensembl	74_37	+1	known	frame_shift_del	c.470	p.F158fs	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF570	HGNC	ENSG00000171827				351	0	0	120	44	26.8293
ZNF793	0	genome.wustl.edu	37	19	38028415	38028415	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	38028415	38028415	T	-	DEL	ZNF793	ENST00000445217	human	ensembl	74_37	+1	known	frame_shift_del	c.855	p.C288fs	0.222	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF793	HGNC	ENSG00000188227				68	0	0	19	6	24
ZNF540	0	genome.wustl.edu	37	19	38102620	38102620	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	38102620	38102620	A	-	DEL	ZNF540	ENST00000316433	human	ensembl	74_37	+1	known	frame_shift_del	c.439	p.M149fs	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817				213	0	0	71	23	24.4681
FAM98C	0	genome.wustl.edu	37	19	38899415	38899416	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	38899415	38899416	-	G	INS	FAM98C	ENST00000252530	human	ensembl	74_37	+1	known	frame_shift_ins	c.943_944	p.R318fs	1.000:1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244				157	0	0	69	14	16.8675
HNRNPL	0	genome.wustl.edu	37	19	39330869	39330869	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	39330869	39330869	G	-	DEL	HNRNPL	ENST00000221419	human	ensembl	74_37	-1	known	frame_shift_del	c.1100	p.P367fs	1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824				19	0	0	14	2	12.5
EGLN2	0	genome.wustl.edu	37	19	41306783	41306783	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	41306783	41306783	G	-	DEL	EGLN2	ENST00000303961	human	ensembl	74_37	+1	known	frame_shift_del	c.306	p.C104fs	0.999	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	EGLN2	HGNC	ENSG00000269858				24	0	0	29	7	19.4444
CYP2F1	0	genome.wustl.edu	37	19	41631481	41631481	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	41631481	41631481	T	-	DEL	CYP2F1	ENST00000331105	human	ensembl	74_37	+1	known	frame_shift_del	c.1236	p.L414fs	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_CYP2_fam,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2F1	HGNC	ENSG00000197446				223	0	0	191	14	6.82927
MEGF8	0	genome.wustl.edu	37	19	42847703	42847703	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	42847703	42847703	G	-	DEL	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	frame_shift_del	c.1588	p.Y532fs	1.000	NULL	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				77	0	0	26	12	31.5789
APOC1	0	genome.wustl.edu	37	19	45419666	45419666	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	45419666	45419666	A	-	DEL	APOC1	ENST00000592885	human	ensembl	74_37	+1	novel	frame_shift_del	c.278	p.T96fs	0.005	NULL	pfam_ApoC-I	-	no_errors	APOC1	HGNC	ENSG00000130208				39	0	0	11	17	60.7143
CLASRP	0	genome.wustl.edu	37	19	45556129	45556129	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	45556129	45556129	C	-	DEL	CLASRP	ENST00000221455	human	ensembl	74_37	+1	known	frame_shift_del	c.278	p.P95fs	0.989	pfam_SWAP_N_domain	pfam_SWAP_N_domain	-	no_errors	CLASRP	HGNC	ENSG00000104859				138	0	0	63	17	21.25
FOSB	0	genome.wustl.edu	37	19	45976070	45976070	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	45976070	45976070	C	-	DEL	FOSB	ENST00000353609	human	ensembl	74_37	+1	known	frame_shift_del	c.817	p.N275fs	0.986	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSB	HGNC	ENSG00000125740				65	0	0	42	15	26.3158
GLTSCR1	0	genome.wustl.edu	37	19	48198190	48198190	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	48198190	48198190	G	-	DEL	GLTSCR1	ENST00000396720	human	ensembl	74_37	+1	known	frame_shift_del	c.2929	p.A979fs	0.010	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169				44	0	0	12	8	40
PLA2G4C	0	genome.wustl.edu	37	19	48588317	48588317	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	48588317	48588317	A	-	DEL	PLA2G4C	ENST00000599111	human	ensembl	74_37	-1	known	frame_shift_del	c.873	p.F291fs	0.095	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4C	HGNC	ENSG00000105499				101	0	0	40	11	21.5686
ZNF114	0	genome.wustl.edu	37	19	48789818	48789818	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	48789818	48789818	T	-	DEL	ZNF114	ENST00000315849	human	ensembl	74_37	+1	known	frame_shift_del	c.937	p.Y315fs	0.070	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150				149	0	0	64	21	24.7059
FAM83E	0	genome.wustl.edu	37	19	49107037	49107038	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	49107037	49107038	-	G	INS	FAM83E	ENST00000263266	human	ensembl	74_37	-1	known	frame_shift_ins	c.890_889	p.Q297fs	0.000:0.001	NULL	pfam_DUF1669,superfamily_Acyl_CoA_acyltransferase	-	no_errors	FAM83E	HGNC	ENSG00000105523				42	0	0	29	5	14.7059
SPHK2	0	genome.wustl.edu	37	19	49131657	49131657	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	49131657	49131657	C	-	DEL	SPHK2	ENST00000340932	human	ensembl	74_37	+1	known	frame_shift_del	c.854	p.S287fs	0.000	smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK2	HGNC	ENSG00000063176				77	0	0	36	7	16.2791
BAX	0	genome.wustl.edu	37	19	49458971	49458971	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	49458971	49458971	G	-	DEL	BAX	ENST00000293288	human	ensembl	74_37	+1	known	frame_shift_del	c.114	p.E41fs	0.588	NULL	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAX	HGNC	ENSG00000087088				121	1	0.819672	79	24	23.301
KCNA7	0	genome.wustl.edu	37	19	49573738	49573738	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	49573738	49573738	A	-	DEL	KCNA7	ENST00000221444	human	ensembl	74_37	-1	known	frame_shift_del	c.953	p.F318fs	1.000	pfam_Ion_trans_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848				63	0	0	39	17	30.3571
AKT1S1	0	genome.wustl.edu	37	19	50373232	50373233	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	50373232	50373233	-	C	INS	AKT1S1	ENST00000344175	human	ensembl	74_37	-1	known	frame_shift_ins	c.713_712	p.D238fs	1.000:1.000	NULL	NULL	-	no_errors	AKT1S1	HGNC	ENSG00000204673				11	0	0	3	3	50
MYH14	0	genome.wustl.edu	37	19	50771562	50771564	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	50771562	50771564	GAG	-	DEL	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	in_frame_del	c.2971_2973	p.E994in_frame_del	1.000:1.000:1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357				28	0	0	5	2	28.5714
KLK1	0	genome.wustl.edu	37	19	51326963	51326963	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	51326963	51326963	C	-	DEL	KLK1	ENST00000301420	human	ensembl	74_37	-1	known	frame_shift_del	c.42	p.T15fs	0.099	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	KLK1	HGNC	ENSG00000167748				59	0	0	39	12	23.5294
ZNF600	0	genome.wustl.edu	37	19	53270553	53270553	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	53270553	53270553	T	-	DEL	ZNF600	ENST00000338230	human	ensembl	74_37	-1	known	frame_shift_del	c.456	p.K152fs	0.065	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF600	HGNC	ENSG00000189190				254	0	0	181	46	20.2643
LILRA4	0	genome.wustl.edu	37	19	54844919	54844919	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	54844919	54844919	G	-	DEL	LILRA4	ENST00000291759	human	ensembl	74_37	-1	known	frame_shift_del	c.1424	p.P475fs	0.004	pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA4	HGNC	ENSG00000239961				95	0	0	117	16	12.0301
ZNF587B	0	genome.wustl.edu	37	19	58353545	58353546	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	58353545	58353546	-	T	INS	ZNF587B	ENST00000594901	human	ensembl	74_37	+1	novel	frame_shift_ins	c.1503_1504	p.R503fs	0.422:0.241	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587B	HGNC	ENSG00000269343				60	0	0	49	11	18.3333
SNAPC2	0	genome.wustl.edu	37	19	7987438	7987438	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	7987438	7987438	C	-	DEL	SNAPC2	ENST00000221573	human	ensembl	74_37	+1	known	frame_shift_del	c.794	p.Q267fs	0.410	pfam_SnAPC_su2-like	pfam_SnAPC_su2-like	-	no_errors	SNAPC2	HGNC	ENSG00000104976				122	0	0	51	15	22.7273
OR7G3	0	genome.wustl.edu	37	19	9236991	9236992	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	19	9236991	9236992	AG	-	DEL	OR7G3	ENST00000305444	human	ensembl	74_37	-1	known	frame_shift_del	c.636_635	p.S212fs	0.010:0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7G3	HGNC	ENSG00000170920				194	0	0	64	25	28.0899
SLC9A2	0	genome.wustl.edu	37	2	103324746	103324746	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	103324746	103324746	C	-	DEL	SLC9A2	ENST00000233969	human	ensembl	74_37	+1	known	frame_shift_del	c.2237	p.P748fs	0.000	prints_Na/H_exchanger_2	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616				336	1	0.296736	106	41	27.8912
TMEM182	0	genome.wustl.edu	37	2	103431478	103431479	+	RNA	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	103431478	103431479	-	T	INS	TMEM182	ENST00000488134	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	TMEM182	HGNC	ENSG00000170417				24	0	0	17	7	29.1667
NPHP1	0	genome.wustl.edu	37	2	110926098	110926098	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	110926098	110926098	T	-	DEL	NPHP1	ENST00000316534	human	ensembl	74_37	-1	known	frame_shift_del	c.555	p.K185fs	0.398	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061				176	0	0	70	20	22.2222
SLC35F5	0	genome.wustl.edu	37	2	114500277	114500278	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	114500277	114500278	AA	-	DEL	SLC35F5	ENST00000245680	human	ensembl	74_37	-1	known	frame_shift_del	c.742_741	p.F247fs	1.000:1.000	pfam_DMT	pfam_DMT	-	no_errors	SLC35F5	HGNC	ENSG00000115084				163	0	0	33	36	52.1739
PTPN4	0	genome.wustl.edu	37	2	120677766	120677766	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	120677766	120677766	A	-	DEL	PTPN4	ENST00000263708	human	ensembl	74_37	+1	known	frame_shift_del	c.950	p.K318fs	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	PTPN4	HGNC	ENSG00000088179				209	0	0	75	31	29.2453
IWS1	0	genome.wustl.edu	37	2	128238676	128238676	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	128238676	128238676	T	-	DEL	IWS1	ENST00000295321	human	ensembl	74_37	-1	known	frame_shift_del	c.2404	p.S802fs	1.000	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166				162	0	0	72	19	20.8791
POTEJ	0	genome.wustl.edu	37	2	131414272	131414272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	131414272	131414272	A	-	DEL	POTEJ	ENST00000409602	human	ensembl	74_37	+1	novel	frame_shift_del	c.1939	p.K649fs	0.001	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEJ	HGNC	ENSG00000222038				104	0	0	63	7	10
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				174	1	0.571429	29	53	64.6341
RIF1	0	genome.wustl.edu	37	2	152322592	152322592	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	152322592	152322592	A	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.6558	p.R2188fs	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				137	0	0	66	23	25.8427
COBLL1	0	genome.wustl.edu	37	2	165551602	165551602	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	165551602	165551602	T	-	DEL	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_del	c.2615	p.K872fs	0.001	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				183	0	0	84	30	26.3158
COBLL1	0	genome.wustl.edu	37	2	165578962	165578962	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	165578962	165578962	A	-	DEL	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_del	c.930	p.Q311fs	0.999	pfam_Cordon-bleu_ubiquitin_domain	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				121	1	0.819672	50	15	23.0769
NOSTRIN	0	genome.wustl.edu	37	2	169717340	169717340	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	169717340	169717340	T	-	DEL	NOSTRIN	ENST00000444448	human	ensembl	74_37	+1	known	frame_shift_del	c.1386	p.L464fs	0.722	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_FCH_dom,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NOSTRIN	HGNC	ENSG00000163072				174	0	0	46	19	29.2308
DYNC1I2	0	genome.wustl.edu	37	2	172549339	172549339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	172549339	172549339	A	-	DEL	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	frame_shift_del	c.161	p.R57fs	1.000	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				41	0	0	13	4	23.5294
MLK7-AS1	0	genome.wustl.edu	37	2	174062720	174062721	+	RNA	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	174062720	174062721	-	A	INS	MLK7-AS1	ENST00000423106	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999:1.000	-	-	-	no_errors	MLK7-AS1	HGNC	ENSG00000238133				63	0	0	33	12	26.6667
ZAK	0	genome.wustl.edu	37	2	174081950	174081950	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	174081950	174081950	A	-	DEL	ZAK	ENST00000375213	human	ensembl	74_37	+1	known	frame_shift_del	c.959	p.K321fs	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLTK	Uniprot_gn	ENSG00000091436				119	0	0	33	13	28.2609
KIAA1715	0	genome.wustl.edu	37	2	176857112	176857112	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	176857112	176857112	T	-	DEL	KIAA1715	ENST00000544803	human	ensembl	74_37	-1	known	frame_shift_del	c.104	p.N35fs	1.000	NULL	pfam_DUF2296	-	no_errors	KIAA1715	HGNC	ENSG00000144320				68	0	0	19	11	36.6667
RAD51AP2	0	genome.wustl.edu	37	2	17698737	17698737	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	17698737	17698737	T	-	DEL	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	frame_shift_del	c.946	p.T316fs	0.003	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				73	0	0	34	15	30.6122
NUP35	0	genome.wustl.edu	37	2	184025805	184025805	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	184025805	184025805	A	-	DEL	NUP35	ENST00000295119	human	ensembl	74_37	+1	known	frame_shift_del	c.927	p.D312fs	0.996	pirsf_Nucleoporin_NUP53	pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53	-	no_errors	NUP35	HGNC	ENSG00000163002				70	0	0	20	10	33.3333
ITGAV	0	genome.wustl.edu	37	2	187521084	187521085	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	187521084	187521085	-	G	INS	ITGAV	ENST00000261023	human	ensembl	74_37	+1	known	frame_shift_ins	c.1675_1676	p.L562fs	0.568:0.609	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448				338	0	0	105	24	18.6047
ITGAV	0	genome.wustl.edu	37	2	187521085	187521085	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	187521085	187521085	G	-	DEL	ITGAV	ENST00000261023	human	ensembl	74_37	+1	known	frame_shift_del	c.1676	p.G561fs	0.609	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448				337	1	0.295858	106	23	17.8295
CARF	0	genome.wustl.edu	37	2	203848308	203848308	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	203848308	203848308	A	-	DEL	CARF	ENST00000320443	human	ensembl	74_37	+1	known	frame_shift_del	c.2139	p.T716fs	0.979	NULL	NULL	-	no_errors	CARF	HGNC	ENSG00000138380				123	0	0	35	24	40.678
ZDBF2	0	genome.wustl.edu	37	2	207174428	207174428	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	207174428	207174428	A	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.5176	p.K1728fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				82	0	0	28	14	33.3333
CRYGB	0	genome.wustl.edu	37	2	209010499	209010499	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	209010499	209010499	G	-	DEL	CRYGB	ENST00000260988	human	ensembl	74_37	-1	known	frame_shift_del	c.251	p.P84fs	0.011	superfamily_G_crystallin-rel	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,prints_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	-	no_errors	CRYGB	HGNC	ENSG00000182187				186	0	0	86	20	18.8679
CRYGA	0	genome.wustl.edu	37	2	209025577	209025577	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	209025577	209025577	C	-	DEL	CRYGA	ENST00000304502	human	ensembl	74_37	-1	known	frame_shift_del	c.476	p.G159fs	0.651	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGA	HGNC	ENSG00000168582				212	0	0	94	33	25.9843
ABCA12	0	genome.wustl.edu	37	2	215884317	215884317	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	215884317	215884317	T	-	DEL	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	frame_shift_del	c.1491	p.V498fs	0.826	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				65	0	0	39	21	35
ASIC4	0	genome.wustl.edu	37	2	220399935	220399935	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	220399935	220399935	C	-	DEL	ASIC4	ENST00000347842	human	ensembl	74_37	+1	known	frame_shift_del	c.1442	p.C483fs	0.992	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC4	HGNC	ENSG00000072182				66	0	0	32	10	23.8095
CUL3	0	genome.wustl.edu	37	2	225368388	225368388	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	225368388	225368388	T	-	DEL	CUL3	ENST00000264414	human	ensembl	74_37	-1	known	frame_shift_del	c.1358	p.N453fs	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257				40	0	0	32	5	13.5135
IRS1	0	genome.wustl.edu	37	2	227661217	227661217	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	227661217	227661217	G	-	DEL	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	frame_shift_del	c.2238	p.S747fs	1.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				403	0	0	137	48	25.9459
SH3BP4	0	genome.wustl.edu	37	2	235949994	235949994	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	235949994	235949994	T	-	DEL	SH3BP4	ENST00000344528	human	ensembl	74_37	+1	known	frame_shift_del	c.581	p.F195fs	0.978	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147				192	0	0	79	29	26.8519
AGAP1	0	genome.wustl.edu	37	2	236877177	236877177	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	236877177	236877177	C	-	DEL	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	frame_shift_del	c.1555	p.S521fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				126	0	0	37	4	9.7561
COX7A2L	0	genome.wustl.edu	37	2	42578275	42578275	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	42578275	42578275	A	-	DEL	COX7A2L	ENST00000482463	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COX7A2L	HGNC	ENSG00000115944				16	0	0	6	5	45.4545
BCL11A	0	genome.wustl.edu	37	2	60780422	60780424	+	RNA	DEL	GGC	GGC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	60780422	60780424	GGC	-	DEL	BCL11A	ENST00000409351	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors	BCL11A	HGNC	ENSG00000119866				42	0	0	7	4	36.3636
EHBP1	0	genome.wustl.edu	37	2	63176135	63176136	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	63176135	63176136	-	A	INS	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	frame_shift_ins	c.2259_2260	p.T755fs	0.083:0.401	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504				117	0	0	42	11	20.7547
C1D	0	genome.wustl.edu	37	2	68270087	68270088	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	68270087	68270088	-	T	INS	C1D	ENST00000355848	human	ensembl	74_37	-1	known	frame_shift_ins	c.360_359	p.N120fs	0.998:1.000	NULL	pfam_Sas10/Utp3/C1D	-	no_errors	C1D	HGNC	ENSG00000197223				45	0	0	21	6	22.2222
ATP6V1B1	0	genome.wustl.edu	37	2	71191573	71191573	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	71191573	71191573	C	-	DEL	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	frame_shift_del	c.1149	p.I386fs	0.999	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				121	0	0	42	13	23.6364
HK2	0	genome.wustl.edu	37	2	75107417	75107417	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	75107417	75107417	G	-	DEL	HK2	ENST00000290573	human	ensembl	74_37	+1	known	frame_shift_del	c.1291	p.V431fs	0.996	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399				598	0	0	212	49	18.7739
GGCX	0	genome.wustl.edu	37	2	85780733	85780733	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	85780733	85780733	T	-	DEL	GGCX	ENST00000482662	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	GGCX	HGNC	ENSG00000115486				24	0	0	9	8	47.0588
RNF103	0	genome.wustl.edu	37	2	86831015	86831015	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	86831015	86831015	T	-	DEL	RNF103	ENST00000237455	human	ensembl	74_37	-1	known	frame_shift_del	c.2009	p.K670fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305				164	1	0.606061	69	26	27.3684
FAHD2CP	0	genome.wustl.edu	37	2	96687157	96687157	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	96687157	96687157	C	-	DEL	FAHD2CP	ENST00000443258	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FAHD2CP	HGNC	ENSG00000231584				25	0	0	15	13	46.4286
TAF1B	0	genome.wustl.edu	37	2	9989571	9989572	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	9989571	9989572	AA	-	DEL	TAF1B	ENST00000263663	human	ensembl	74_37	+1	known	frame_shift_del	c.187_188	p.N66fs	0.991:0.950	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750				16	0	0	7	4	36.3636
EIF5B	0	genome.wustl.edu	37	2	99976805	99976805	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	2	99976805	99976805	A	-	DEL	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	frame_shift_del	c.142	p.K50fs	1.000	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				28	0	0	18	8	30.7692
JAG1	0	genome.wustl.edu	37	20	10626634	10626634	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	10626634	10626634	C	-	DEL	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	frame_shift_del	c.1984	p.A662fs	0.141	pfam_EG-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384				227	0	0	75	24	24.2424
ISM1	0	genome.wustl.edu	37	20	13260475	13260475	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	13260475	13260475	C	-	DEL	ISM1	ENST00000262487	human	ensembl	74_37	+1	known	frame_shift_del	c.573	p.R194fs	1.000	NULL	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230				118	0	0	41	10	19.6078
ESF1	0	genome.wustl.edu	37	20	13763492	13763492	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	13763492	13763492	T	-	DEL	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	frame_shift_del	c.295	p.T99fs	0.000	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048				49	0	0	21	12	36.3636
NDUFAF5	0	genome.wustl.edu	37	20	13797842	13797842	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	13797842	13797842	A	-	DEL	NDUFAF5	ENST00000378106	human	ensembl	74_37	+1	known	frame_shift_del	c.1024	p.K343fs	0.026	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Put_SAM_MeTrfase	-	no_errors	NDUFAF5	HGNC	ENSG00000101247				352	0	0	102	18	15
RRBP1	0	genome.wustl.edu	37	20	17601408	17601410	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	17601408	17601410	CTC	-	DEL	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	in_frame_del	c.3459_3457	p.E1153in_frame_del	1.000:1.000:1.000	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844				62	0	0	22	6	21.4286
C20orf26	0	genome.wustl.edu	37	20	20123534	20123534	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	20123534	20123534	A	-	DEL	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	frame_shift_del	c.893	p.I300fs	0.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				19	0	0	4	3	42.8571
SNRPB	0	genome.wustl.edu	37	20	2443740	2443740	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	2443740	2443740	G	-	DEL	SNRPB	ENST00000438552	human	ensembl	74_37	-1	known	frame_shift_del	c.554	p.P185fs	1.000	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPB	HGNC	ENSG00000125835				268	0	0	110	35	24.1379
HM13	0	genome.wustl.edu	37	20	30142485	30142488	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	30142485	30142488	AAAA	-	DEL	HM13	ENST00000474466	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.172:0.159:0.155:0.142	-	-	-	no_errors	HM13	HGNC	ENSG00000101294				40	0	0	9	9	50
MYLK2	0	genome.wustl.edu	37	20	30407987	30407987	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	30407987	30407987	C	-	DEL	MYLK2	ENST00000375985	human	ensembl	74_37	+1	known	frame_shift_del	c.111	p.P39fs	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306				150	1	0.662252	46	19	29.2308
BPIFB4	0	genome.wustl.edu	37	20	31671213	31671214	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	31671213	31671214	-	C	INS	BPIFB4	ENST00000375483	human	ensembl	74_37	+1	known	frame_shift_ins	c.210_211	p.V73fs	0.020:0.030	NULL	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191				198	1	0.502513	72	15	17.2414
BPIFB4	0	genome.wustl.edu	37	20	31671214	31671214	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	31671214	31671214	C	-	DEL	BPIFB4	ENST00000375483	human	ensembl	74_37	+1	known	frame_shift_del	c.211	p.P73fs	0.030	NULL	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191				199	0	0	65	22	25.2874
MIR644A	0	genome.wustl.edu	37	20	33054129	33054130	+	RNA	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	33054129	33054130	-	T	INS	MIR644A	ENST00000385262	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024:0.030	-	-	-	no_errors	MIR644A	HGNC	ENSG00000207997				31	0	0	18	10	35.7143
NCOA6	0	genome.wustl.edu	37	20	33346694	33346694	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	33346694	33346694	G	-	DEL	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	frame_shift_del	c.557	p.P186fs	0.996	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				131	0	0	68	19	21.8391
GDF5	0	genome.wustl.edu	37	20	34025552	34025552	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	34025552	34025552	G	-	DEL	GDF5	ENST00000374369	human	ensembl	74_37	-1	known	frame_shift_del	c.157	p.L53fs	0.072	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF5	HGNC	ENSG00000125965				33	0	0	13	6	31.5789
TTI1	0	genome.wustl.edu	37	20	36640587	36640587	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	36640587	36640587	T	-	DEL	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	frame_shift_del	c.1632	p.K544fs	0.000	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				189	0	0	100	40	28.5714
SIGLEC1	0	genome.wustl.edu	37	20	3684491	3684491	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	3684491	3684491	G	-	DEL	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	frame_shift_del	c.954	p.I319fs	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				55	0	0	30	8	21.0526
TOP1	0	genome.wustl.edu	37	20	39750659	39750661	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	39750659	39750661	AAG	-	DEL	TOP1	ENST00000361337	human	ensembl	74_37	+1	known	in_frame_del	c.2059_2061	p.K689in_frame_del	1.000:1.000:1.000	superfamily_DNA_brk_join_enz,smart_TopoI_euk	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1	HGNC	ENSG00000198900				172	0	0	62	18	22.5
SNX21	0	genome.wustl.edu	37	20	44469004	44469004	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	44469004	44469004	A	-	DEL	SNX21	ENST00000465997	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNX21	HGNC	ENSG00000124104				34	0	0	24	8	25
ACOT8	0	genome.wustl.edu	37	20	44472965	44472965	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	44472965	44472965	G	-	DEL	ACOT8	ENST00000217455	human	ensembl	74_37	-1	known	frame_shift_del	c.583	p.L195fs	0.000	tigrfam_Acyl_CoA_thio	pfam_Acyl_CoA_thio_II_dom,tigrfam_Acyl_CoA_thio	-	no_errors	ACOT8	HGNC	ENSG00000101473				106	0	0	30	15	33.3333
FERMT1	0	genome.wustl.edu	37	20	6091015	6091015	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	6091015	6091015	G	-	DEL	FERMT1	ENST00000217289	human	ensembl	74_37	-1	known	frame_shift_del	c.676	p.Q226fs	0.001	pfam_FERM_N,smart_Band_41_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT1	HGNC	ENSG00000101311				86	0	0	35	14	28.5714
DIDO1	0	genome.wustl.edu	37	20	61537402	61537402	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	61537402	61537402	T	-	DEL	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	frame_shift_del	c.1425	p.E476fs	0.986	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				192	0	0	75	20	21.0526
COL20A1	0	genome.wustl.edu	37	20	61959724	61959724	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	20	61959724	61959724	C	-	DEL	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	frame_shift_del	c.3751	p.M1253fs	1.000	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				51	0	0	10	3	23.0769
LTN1	0	genome.wustl.edu	37	21	30341860	30341860	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	30341860	30341860	A	-	DEL	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	frame_shift_del	c.1377	p.F459fs	0.999	superfamily_ARM-type_fold	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				184	0	0	75	31	29.2453
PDE9A	0	genome.wustl.edu	37	21	44195538	44195541	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	44195538	44195541	AAAA	-	DEL	PDE9A	ENST00000460989	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors	PDE9A	HGNC	ENSG00000160191				21	0	0	6	5	45.4545
TSPEAR	0	genome.wustl.edu	37	21	45987773	45987773	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	45987773	45987773	G	-	DEL	TSPEAR	ENST00000323084	human	ensembl	74_37	-1	known	frame_shift_del	c.199	p.R67fs	0.978	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EPTP,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_EAR	-	no_errors	TSPEAR	HGNC	ENSG00000175894				107	1	0.925926	44	15	25.4237
MCM3AP-AS1	0	genome.wustl.edu	37	21	47662900	47662903	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	21	47662900	47662903	AAAA	-	DEL	MCM3AP-AS1	ENST00000421927	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors	MCM3AP-AS1	HGNC	ENSG00000215424				53	0	0	33	11	25
IL17RA	0	genome.wustl.edu	37	22	17590404	17590404	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	17590404	17590404	G	-	DEL	IL17RA	ENST00000319363	human	ensembl	74_37	+1	known	frame_shift_del	c.2295	p.G767fs	0.028	NULL	pfam_SEFIR	-	no_errors	IL17RA	HGNC	ENSG00000177663				15	0	0	11	3	21.4286
ZDHHC8	0	genome.wustl.edu	37	22	20130522	20130522	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	20130522	20130522	C	-	DEL	ZDHHC8	ENST00000405930	human	ensembl	74_37	+1	known	frame_shift_del	c.1369	p.T459fs	0.997	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904				48	0	0	27	10	27.027
GNAZ	0	genome.wustl.edu	37	22	23438488	23438488	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	23438488	23438488	G	-	DEL	GNAZ	ENST00000248996	human	ensembl	74_37	+1	known	frame_shift_del	c.606	p.Q205fs	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266				259	1	0.384615	102	46	31.0811
SPECC1L	0	genome.wustl.edu	37	22	24717353	24717354	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	24717353	24717354	-	A	INS	SPECC1L	ENST00000314328	human	ensembl	74_37	+1	known	frame_shift_ins	c.405_406	p.L137fs	1.000:1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_bHLH_dom,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1L	HGNC	ENSG00000100014				279	0	0	108	43	28.4768
MN1	0	genome.wustl.edu	37	22	28193690	28193690	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	28193690	28193690	T	-	DEL	MN1	ENST00000302326	human	ensembl	74_37	-1	known	frame_shift_del	c.2842	p.R948fs	1.000	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184				33	0	0	11	4	26.6667
ZNRF3	0	genome.wustl.edu	37	22	29445999	29445999	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	29445999	29445999	G	-	DEL	ZNRF3	ENST00000544604	human	ensembl	74_37	+1	known	frame_shift_del	c.1830	p.G612fs	0.026	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579				250	0	0	71	27	27.551
SSTR3	0	genome.wustl.edu	37	22	37602620	37602621	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	37602620	37602621	-	C	INS	SSTR3	ENST00000328544	human	ensembl	74_37	-1	known	frame_shift_ins	c.1223_1222	p.E408fs	0.618:0.521	prints_Somatstn_rcpt_3	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_3,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR3	HGNC	ENSG00000183473				134	0	0	41	7	14.5833
DDX17	0	genome.wustl.edu	37	22	38897211	38897211	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	38897211	38897211	T	-	DEL	DDX17	ENST00000396821	human	ensembl	74_37	-1	known	frame_shift_del	c.362	p.K121fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201				71	0	0	42	8	16
CELSR1	0	genome.wustl.edu	37	22	46931227	46931227	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	22	46931227	46931227	C	-	DEL	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.G614fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				71	0	0	25	8	24.2424
PVRL3	0	genome.wustl.edu	37	3	110852822	110852822	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	110852822	110852822	A	-	DEL	PVRL3	ENST00000485303	human	ensembl	74_37	+1	known	frame_shift_del	c.1410	p.E473fs	0.999	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	PVRL3	HGNC	ENSG00000177707				62	0	0	49	20	28.9855
SLC9C1	0	genome.wustl.edu	37	3	112005609	112005610	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	112005609	112005610	-	A	INS	SLC9C1	ENST00000305815	human	ensembl	74_37	-1	known	frame_shift_ins	c.30_29	p.S11fs	0.000:0.000	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C1	HGNC	ENSG00000172139				51	0	0	26	11	29.7297
CCDC80	0	genome.wustl.edu	37	3	112357269	112357269	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	112357269	112357269	T	-	DEL	CCDC80	ENST00000206423	human	ensembl	74_37	-1	known	frame_shift_del	c.1484	p.K495fs	1.000	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986				181	0	0	67	29	30.2083
ZDHHC23	0	genome.wustl.edu	37	3	113679540	113679540	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	113679540	113679540	T	-	DEL	ZDHHC23	ENST00000488129	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	ZDHHC23	HGNC	ENSG00000184307				117	0	0	34	12	26.087
SEMA5B	0	genome.wustl.edu	37	3	122631702	122631702	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	122631702	122631702	G	-	DEL	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	frame_shift_del	c.2875	p.Q959fs	0.998	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				189	0	0	68	19	21.8391
MYLK	0	genome.wustl.edu	37	3	123368043	123368044	+	Splice_Site	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	123368043	123368044	-	G	INS	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	splice_site_ins	c.4289-3_4289-2	e22-2	0.975:0.100	-	-	-	no_errors	MYLK	HGNC	ENSG00000065534				132	0	0	51	11	17.7419
CCDC14	0	genome.wustl.edu	37	3	123665727	123665727	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	123665727	123665727	T	-	DEL	CCDC14	ENST00000488653	human	ensembl	74_37	-1	known	frame_shift_del	c.1268	p.N423fs	0.964	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455				244	0	0	97	42	30.2158
KALRN	0	genome.wustl.edu	37	3	124438053	124438053	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	124438053	124438053	C	-	DEL	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	frame_shift_del	c.8697	p.H2901fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				84	0	0	38	22	36.6667
ZNF148	0	genome.wustl.edu	37	3	125032219	125032219	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	125032219	125032219	T	-	DEL	ZNF148	ENST00000360647	human	ensembl	74_37	-1	known	frame_shift_del	c.266	p.N89fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF148	HGNC	ENSG00000163848				132	0	0	86	30	25.8621
CNTN6	0	genome.wustl.edu	37	3	1371501	1371502	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	1371501	1371502	AA	-	DEL	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	frame_shift_del	c.1246_1247	p.K418fs	0.992:0.994	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				151	0	0	33	22	40
DBR1	0	genome.wustl.edu	37	3	137892418	137892418	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	137892418	137892418	C	-	DEL	DBR1	ENST00000260803	human	ensembl	74_37	-1	known	frame_shift_del	c.248	p.G83fs	1.000	pfam_PEstase_dom	pfam_DBR1_C,pfam_PEstase_dom	-	no_errors	DBR1	HGNC	ENSG00000138231				220	0	0	93	35	27.3438
PIK3CB	0	genome.wustl.edu	37	3	138413710	138413710	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	138413710	138413710	G	-	DEL	PIK3CB	ENST00000289153	human	ensembl	74_37	-1	known	frame_shift_del	c.1810	p.R604fs	0.240	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382				147	1	0.675676	55	23	29.4872
ZBTB38	0	genome.wustl.edu	37	3	141162875	141162875	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	141162875	141162875	A	-	DEL	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	frame_shift_del	c.1648	p.T552fs	0.999	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311				107	0	0	46	20	30.303
ENSG00000244327	0	genome.wustl.edu	37	3	142184164	142184166	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	142184164	142184166	AAA	-	DEL	ENSG00000244327	ENST00000460977	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001:0.000	-	-	-	no_errors	RP11-383G6.3	Clone_based_vega_gene	ENSG00000244327				22	0	0	12	4	25
PLSCR1	0	genome.wustl.edu	37	3	146234963	146234964	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	146234963	146234964	AA	-	DEL	PLSCR1	ENST00000484560	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.163:0.236	-	-	-	no_errors	PLSCR1	HGNC	ENSG00000188313				52	0	0	33	8	19.5122
CAPN7	0	genome.wustl.edu	37	3	15292713	15292713	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	15292713	15292713	T	-	DEL	CAPN7	ENST00000253693	human	ensembl	74_37	+1	known	frame_shift_del	c.2388	p.F798fs	0.122	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_MIT,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_MIT,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN7	HGNC	ENSG00000131375				158	0	0	63	30	32.2581
ANKRD28	0	genome.wustl.edu	37	3	15717504	15717504	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	15717504	15717504	A	-	DEL	ANKRD28	ENST00000498713	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKRD28	HGNC	ENSG00000206560				57	0	0	28	8	22.2222
IFT80	0	genome.wustl.edu	37	3	160102250	160102250	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	160102250	160102250	A	-	DEL	IFT80	ENST00000465972	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IFT80	HGNC	ENSG00000068885				15	0	0	6	9	60
SERPINI1	0	genome.wustl.edu	37	3	167543189	167543189	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	167543189	167543189	T	-	DEL	SERPINI1	ENST00000488374	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SERPINI1	HGNC	ENSG00000163536				31	0	0	24	13	35.1351
TBL1XR1	0	genome.wustl.edu	37	3	176769342	176769342	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	176769342	176769342	T	-	DEL	TBL1XR1	ENST00000430069	human	ensembl	74_37	-1	known	frame_shift_del	c.377	p.N126fs	1.000	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1XR1	HGNC	ENSG00000177565				168	0	0	48	19	28.3582
ACTL6A	0	genome.wustl.edu	37	3	179288016	179288016	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	179288016	179288016	A	-	DEL	ACTL6A	ENST00000429709	human	ensembl	74_37	+1	known	frame_shift_del	c.264	p.N90fs	0.169	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL6A	HGNC	ENSG00000136518				149	0	0	72	21	22.5806
USP13	0	genome.wustl.edu	37	3	179408081	179408081	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	179408081	179408081	T	-	DEL	USP13	ENST00000263966	human	ensembl	74_37	+1	known	frame_shift_del	c.347	p.L118fs	1.000	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP13	HGNC	ENSG00000058056				100	0	0	29	7	19.4444
MCCC1-AS1	0	genome.wustl.edu	37	3	182735278	182735278	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	182735278	182735278	A	-	DEL	MCCC1-AS1	ENST00000471731	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	MCCC1-AS1	HGNC	ENSG00000243368				18	0	0	15	6	28.5714
TMEM41A	0	genome.wustl.edu	37	3	185212518	185212518	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	185212518	185212518	A	-	DEL	TMEM41A	ENST00000421852	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.F156fs	1.000	pfam_SNARE_assoc	pfam_SNARE_assoc	-	no_errors	TMEM41A	HGNC	ENSG00000163900				283	0	0	100	29	22.4806
BCL6	0	genome.wustl.edu	37	3	187446270	187446270	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	187446270	187446270	G	-	DEL	BCL6	ENST00000232014	human	ensembl	74_37	-1	known	frame_shift_del	c.1418	p.P473fs	0.891	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6	HGNC	ENSG00000113916				57	0	0	11	8	42.1053
UTS2B	0	genome.wustl.edu	37	3	190999982	190999982	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	190999982	190999982	A	-	DEL	UTS2B	ENST00000463450	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.384	-	-	-	no_errors	UTS2B	HGNC	ENSG00000188958				42	0	0	16	4	20
ATP13A3	0	genome.wustl.edu	37	3	194147849	194147850	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	194147849	194147850	-	A	INS	ATP13A3	ENST00000256031	human	ensembl	74_37	-1	known	frame_shift_ins	c.3080_3079	p.W1027fs	1.000:1.000	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A3	HGNC	ENSG00000133657				98	0	0	37	9	19.5652
TNK2	0	genome.wustl.edu	37	3	195594633	195594633	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	195594633	195594633	G	-	DEL	TNK2	ENST00000381916	human	ensembl	74_37	-1	known	frame_shift_del	c.2725	p.Q909fs	1.000	pfam_Inhibitor_Mig-6	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cdc42_binding_dom_like,pfam_Inhibitor_Mig-6,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	TNK2	HGNC	ENSG00000061938				49	0	0	18	4	18.1818
NCBP2	0	genome.wustl.edu	37	3	196664216	196664216	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	196664216	196664216	A	-	DEL	NCBP2	ENST00000467803	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	NCBP2	HGNC	ENSG00000114503				15	0	0	9	4	30.7692
EOMES	0	genome.wustl.edu	37	3	27758575	27758575	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	27758575	27758575	A	-	DEL	EOMES	ENST00000449599	human	ensembl	74_37	-1	known	frame_shift_del	c.2104	p.Y702fs	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	EOMES	HGNC	ENSG00000163508				134	0	0	64	26	28.8889
PDCD6IP	0	genome.wustl.edu	37	3	33866811	33866811	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	33866811	33866811	T	-	DEL	PDCD6IP	ENST00000457054	human	ensembl	74_37	+1	known	frame_shift_del	c.595	p.L201fs	0.997	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248				195	1	0.510204	85	21	19.8113
SCN11A	0	genome.wustl.edu	37	3	38949441	38949441	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	38949441	38949441	T	-	DEL	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	frame_shift_del	c.1472	p.K491fs	0.352	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				112	0	0	48	17	26.1538
GORASP1	0	genome.wustl.edu	37	3	39141846	39141847	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	39141846	39141847	-	G	INS	GORASP1	ENST00000319283	human	ensembl	74_37	-1	known	frame_shift_ins	c.715_714	p.E238fs	0.069:0.005	pfam_GRASP55/65_PDZ	pfam_GRASP55/65_PDZ,superfamily_PDZ	-	no_errors	GORASP1	HGNC	ENSG00000114745				104	0	0	28	13	31.7073
ENTPD3	0	genome.wustl.edu	37	3	40468948	40468951	+	Frame_Shift_Del	DEL	AAGA	AAGA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAGA	AAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	40468948	40468951	AAGA	-	DEL	ENTPD3	ENST00000301825	human	ensembl	74_37	+1	known	frame_shift_del	c.1539_1542	p.K515fs	0.002:0.002:0.000:0.000	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD3	HGNC	ENSG00000168032				92	0	0	40	12	23.0769
ZNF620	0	genome.wustl.edu	37	3	40557432	40557433	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	40557432	40557433	-	G	INS	ZNF620	ENST00000314529	human	ensembl	74_37	+1	known	frame_shift_ins	c.347_348	p.L119fs	0.000:0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF620	HGNC	ENSG00000177842				96	0	0	30	13	30.2326
CCDC13-AS1	0	genome.wustl.edu	37	3	42787390	42787392	+	RNA	DEL	AGG	AGG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	42787390	42787392	AGG	-	DEL	CCDC13-AS1	ENST00000418161	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	CCDC13-AS1	HGNC	ENSG00000173811				80	0	0	40	18	31.0345
ABHD5	0	genome.wustl.edu	37	3	43732493	43732495	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	43732493	43732495	GGA	-	DEL	ABHD5	ENST00000458276	human	ensembl	74_37	+1	known	in_frame_del	c.9_11	p.E7in_frame_del	0.992:1.000:1.000	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	-	no_errors	ABHD5	HGNC	ENSG00000011198				65	0	0	15	2	11.7647
XCR1	0	genome.wustl.edu	37	3	46063400	46063400	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	46063400	46063400	A	-	DEL	XCR1	ENST00000309285	human	ensembl	74_37	-1	known	frame_shift_del	c.40	p.Y14fs	0.080	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_XCR1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	-	no_errors	XCR1	HGNC	ENSG00000173578				131	0	0	47	14	22.9508
PTH1R	0	genome.wustl.edu	37	3	46944891	46944891	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	46944891	46944891	C	-	DEL	PTH1R	ENST00000313049	human	ensembl	74_37	+1	known	frame_shift_del	c.1527	p.R511fs	0.992	prints_GPCR_2_parathyroid_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_parathyroid_rcpt	-	no_errors	PTH1R	HGNC	ENSG00000160801				80	0	0	35	9	20.4545
NBEAL2	0	genome.wustl.edu	37	3	47042822	47042823	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	47042822	47042823	-	G	INS	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	frame_shift_ins	c.4538_4539	p.V1515fs	0.000:0.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				124	0	0	44	19	30.1587
PTPN23	0	genome.wustl.edu	37	3	47451532	47451532	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	47451532	47451532	C	-	DEL	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	frame_shift_del	c.2244	p.P750fs	1.000	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				35	0	0	5	7	58.3333
PTPN23	0	genome.wustl.edu	37	3	47454113	47454115	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	47454113	47454115	AGA	-	DEL	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	in_frame_del	c.4427_4429	p.K1477in_frame_del	0.999:1.000:1.000	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				92	0	0	37	14	27.451
ZNF589	0	genome.wustl.edu	37	3	48309594	48309594	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	48309594	48309594	G	-	DEL	ZNF589	ENST00000354698	human	ensembl	74_37	+1	known	frame_shift_del	c.413	p.A140fs	0.110	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF589	HGNC	ENSG00000164048				223	1	0.446429	66	26	28.2609
ARIH2	0	genome.wustl.edu	37	3	48965138	48965138	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	48965138	48965138	G	-	DEL	ARIH2	ENST00000356401	human	ensembl	74_37	+1	known	frame_shift_del	c.147	p.A51fs	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	ARIH2	HGNC	ENSG00000177479				65	0	0	44	21	32.3077
IFRD2	0	genome.wustl.edu	37	3	50327898	50327898	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	50327898	50327898	C	-	DEL	IFRD2	ENST00000336089	human	ensembl	74_37	-1	known	frame_shift_del	c.682	p.D228fs	0.996	pfam_Interferon-rel_develop_reg_N	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD2	HGNC	ENSG00000214706				19	0	0	5	3	37.5
DOCK3	0	genome.wustl.edu	37	3	51417604	51417605	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	51417604	51417605	CC	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549_5550	p.P1852fs	0.115:0.081	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				103	0	0	22	4	15.3846
STAB1	0	genome.wustl.edu	37	3	52546401	52546401	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	52546401	52546401	C	-	DEL	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	frame_shift_del	c.2928	p.P978fs	0.997	superfamily_FAS1_domain,smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				209	0	0	78	26	25
PTPRG	0	genome.wustl.edu	37	3	62248542	62248542	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	62248542	62248542	A	-	DEL	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	frame_shift_del	c.2629	p.N878fs	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				54	0	0	24	6	20
MAGI1	0	genome.wustl.edu	37	3	65361570	65361571	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	65361570	65361571	-	C	INS	MAGI1	ENST00000402939	human	ensembl	74_37	-1	known	frame_shift_ins	c.3046_3045	p.S1015fs	1.000:1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				91	0	0	50	16	24.2424
HTR1F	0	genome.wustl.edu	37	3	88040823	88040823	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	88040823	88040823	T	-	DEL	HTR1F	ENST00000319595	human	ensembl	74_37	+1	known	frame_shift_del	c.924	p.F310fs	0.753	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_5HT1F_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HTR1F	HGNC	ENSG00000179097				66	0	0	27	13	32.5
FILIP1L	0	genome.wustl.edu	37	3	99568273	99568273	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	3	99568273	99568273	T	-	DEL	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	frame_shift_del	c.2247	p.K749fs	1.000	superfamily_Prefoldin	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				190	0	0	109	38	25.8503
TRAM1L1	0	genome.wustl.edu	37	4	118005517	118005517	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	118005517	118005517	T	-	DEL	TRAM1L1	ENST00000310754	human	ensembl	74_37	-1	known	frame_shift_del	c.1033	p.R345fs	1.000	pirsf_Translocation_assoc_membrane	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599				257	1	0.387597	117	38	24.5161
SYNPO2	0	genome.wustl.edu	37	4	119978598	119978598	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	119978598	119978598	C	-	DEL	SYNPO2	ENST00000307142	human	ensembl	74_37	+1	known	frame_shift_del	c.3295	p.I1101fs	0.273	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403				134	0	0	59	16	21.3333
FGF2	0	genome.wustl.edu	37	4	123748461	123748461	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	123748461	123748461	C	-	DEL	FGF2	ENST00000264498	human	ensembl	74_37	+1	known	frame_shift_del	c.531	p.D179fs	0.998	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF2	HGNC	ENSG00000138685				64	0	0	17	5	22.7273
FAT4	0	genome.wustl.edu	37	4	126398521	126398522	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	126398521	126398522	-	A	INS	FAT4	ENST00000335110	human	ensembl	74_37	+1	known	frame_shift_ins	c.7294_7295	p.C2435fs	0.004:0.000	superfamily_ConA-like_lec_gl_sf	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				96	0	0	41	14	25.4545
SLC7A11	0	genome.wustl.edu	37	4	139153476	139153476	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	139153476	139153476	A	-	DEL	SLC7A11	ENST00000280612	human	ensembl	74_37	-1	known	frame_shift_del	c.465	p.F155fs	1.000	pfam_AA-permease/SLC12A_dom,pfam_AA_transpt_TM,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease/SLC12A_dom,pfam_AA_transpt_TM,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A11	HGNC	ENSG00000151012				107	0	0	25	9	26.4706
MGST2	0	genome.wustl.edu	37	4	140624683	140624683	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	140624683	140624683	A	-	DEL	MGST2	ENST00000265498	human	ensembl	74_37	+1	known	frame_shift_del	c.304	p.K103fs	0.060	pfam_Membr-assoc_MAPEG	pfam_Membr-assoc_MAPEG,prints_5_LipOase_AP	-	no_errors	MGST2	HGNC	ENSG00000085871				94	0	0	33	7	17.5
ZNF330	0	genome.wustl.edu	37	4	142143532	142143532	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	142143532	142143532	A	-	DEL	ZNF330	ENST00000262990	human	ensembl	74_37	+1	known	frame_shift_del	c.7	p.K5fs	1.000	pfam_NOA36	pfam_NOA36	-	no_errors	ZNF330	HGNC	ENSG00000109445				43	0	0	18	12	40
ZNF718	0	genome.wustl.edu	37	4	154927	154927	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	154927	154927	T	-	DEL	ZNF718	ENST00000400172	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312				16	0	0	9	5	35.7143
HAND2	0	genome.wustl.edu	37	4	174450159	174450159	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	174450159	174450159	C	-	DEL	HAND2	ENST00000359562	human	ensembl	74_37	-1	known	frame_shift_del	c.282	p.P95fs	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	HAND2	HGNC	ENSG00000164107				39	0	0	20	5	20
WWC2	0	genome.wustl.edu	37	4	184187099	184187099	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	184187099	184187099	A	-	DEL	WWC2	ENST00000448232	human	ensembl	74_37	+1	known	frame_shift_del	c.2202	p.V736fs	0.971	superfamily_C2_dom	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC2	HGNC	ENSG00000151718				42	0	0	12	5	29.4118
SNX25	0	genome.wustl.edu	37	4	186272695	186272695	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	186272695	186272695	A	-	DEL	SNX25	ENST00000264694	human	ensembl	74_37	+1	known	frame_shift_del	c.1906	p.N638fs	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_RGS_dom,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX25	HGNC	ENSG00000109762				98	0	0	54	18	25
PPARGC1A	0	genome.wustl.edu	37	4	23830061	23830061	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	23830061	23830061	T	-	DEL	PPARGC1A	ENST00000264867	human	ensembl	74_37	-1	known	frame_shift_del	c.719	p.K240fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819				228	0	0	70	33	32.0388
ZCCHC4	0	genome.wustl.edu	37	4	25334885	25334886	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	25334885	25334886	-	T	INS	ZCCHC4	ENST00000302874	human	ensembl	74_37	+1	known	frame_shift_ins	c.410_411	p.W137fs	0.855:0.856	NULL	pfam_Znf_GRF,pfam_N6_adenine_Mtase-rel_euk,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZCCHC4	HGNC	ENSG00000168228				79	0	0	50	21	29.5775
RGS12	0	genome.wustl.edu	37	4	3430399	3430399	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	3430399	3430399	A	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.3526	p.K1178fs	1.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				131	1	0.757576	35	6	14.6341
ARAP2	0	genome.wustl.edu	37	4	36230898	36230898	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	36230898	36230898	T	-	DEL	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	frame_shift_del	c.211	p.M71fs	0.997	superfamily_SAM/pointed	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				106	0	0	49	21	30
KLF3	0	genome.wustl.edu	37	4	38690460	38690460	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	38690460	38690460	A	-	DEL	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	frame_shift_del	c.312	p.K106fs	0.008	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				148	0	0	69	24	25.8065
GUF1	0	genome.wustl.edu	37	4	44700615	44700615	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	44700615	44700615	A	-	DEL	GUF1	ENST00000281543	human	ensembl	74_37	+1	known	frame_shift_del	c.1927	p.K645fs	0.999	pfam_LepA_GTP-bd_C,tigrfam_EF-4	pfam_EF_GTP-bd_dom,pfam_LepA_GTP-bd_C,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,pfam_Small_GTPase,superfamily_P-loop_NTPase,superfamily_EFG_III-V,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_EF-4,tigrfam_Small_GTP-bd_dom	-	no_errors	GUF1	HGNC	ENSG00000151806				103	1	0.961538	40	20	33.3333
FRYL	0	genome.wustl.edu	37	4	48604083	48604083	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	48604083	48604083	A	-	DEL	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	frame_shift_del	c.989	p.L330fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				106	1	0.934579	29	11	27.5
OCIAD2	0	genome.wustl.edu	37	4	48894833	48894833	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	48894833	48894833	A	-	DEL	OCIAD2	ENST00000508632	human	ensembl	74_37	-1	known	frame_shift_del	c.339	p.F113fs	0.890	pfam_OCIA	pfam_OCIA	-	no_errors	OCIAD2	HGNC	ENSG00000145247				407	0	0	131	44	25.1429
LRRC66	0	genome.wustl.edu	37	4	52861964	52861965	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	52861964	52861965	-	T	INS	LRRC66	ENST00000343457	human	ensembl	74_37	-1	known	frame_shift_ins	c.1224_1223	p.C409fs	0.067:0.056	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993				69	0	0	21	15	41.6667
CENPC	0	genome.wustl.edu	37	4	68384936	68384936	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	68384936	68384936	T	-	DEL	CENPC	ENST00000273853	human	ensembl	74_37	-1	known	frame_shift_del	c.616	p.R206fs	1.000	NULL	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC	HGNC	ENSG00000145241				88	0	0	36	11	23.4043
USO1	0	genome.wustl.edu	37	4	76722290	76722291	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	76722290	76722291	-	A	INS	USO1	ENST00000538159	human	ensembl	74_37	+1	known	frame_shift_ins	c.1950_1951	p.T652fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768				30	0	0	14	5	26.3158
HNRNPD	0	genome.wustl.edu	37	4	83276431	83276431	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	83276431	83276431	A	-	DEL	HNRNPD	ENST00000508119	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HNRNPD	HGNC	ENSG00000138668				34	0	0	6	19	76
ACOX3	0	genome.wustl.edu	37	4	8412062	8412063	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	8412062	8412063	-	G	INS	ACOX3	ENST00000356406	human	ensembl	74_37	-1	known	frame_shift_ins	c.564_563	p.D189fs	0.002:1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008				87	0	0	43	11	20.3704
WDFY3	0	genome.wustl.edu	37	4	85617218	85617218	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	85617218	85617218	A	-	DEL	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	frame_shift_del	c.8806	p.Y2936fs	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				123	0	0	68	15	18.0723
WDFY3	0	genome.wustl.edu	37	4	85676453	85676453	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	85676453	85676453	A	-	DEL	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	frame_shift_del	c.5525	p.L1842fs	0.996	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				126	0	0	39	11	22
WDFY3-AS1	0	genome.wustl.edu	37	4	85731542	85731545	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	85731542	85731545	AAAA	-	DEL	WDFY3-AS1	ENST00000510449	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009:0.004:0.002:0.071	-	-	-	no_errors	WDFY3-AS1	HGNC	ENSG00000251260				8	0	0	7	3	30
ATOH1	0	genome.wustl.edu	37	4	94750382	94750382	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	94750382	94750382	G	-	DEL	ATOH1	ENST00000306011	human	ensembl	74_37	+1	known	frame_shift_del	c.305	p.E104fs	0.113	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ATOH1	HGNC	ENSG00000172238				50	0	0	20	8	28.5714
BMPR1B	0	genome.wustl.edu	37	4	96025646	96025646	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	4	96025646	96025646	C	-	DEL	BMPR1B	ENST00000440890	human	ensembl	74_37	+1	known	frame_shift_del	c.161	p.R56fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	BMPR1B	HGNC	ENSG00000138696				127	0	0	52	22	29.7297
CEP120	0	genome.wustl.edu	37	5	122720714	122720714	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	122720714	122720714	A	-	DEL	CEP120	ENST00000306467	human	ensembl	74_37	-1	known	frame_shift_del	c.1694	p.L565fs	1.000	superfamily_C2_dom	pfam_DUF3668,superfamily_C2_dom	-	no_errors	CEP120	HGNC	ENSG00000168944				108	0	0	57	18	24
FNIP1	0	genome.wustl.edu	37	5	131046332	131046332	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	131046332	131046332	G	-	DEL	FNIP1	ENST00000510461	human	ensembl	74_37	-1	known	frame_shift_del	c.645	p.R216fs	0.999	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128				49	0	0	23	3	11.5385
RAD50	0	genome.wustl.edu	37	5	131944382	131944382	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	131944382	131944382	A	-	DEL	RAD50	ENST00000265335	human	ensembl	74_37	+1	known	frame_shift_del	c.2794	p.N934fs	1.000	superfamily_P-loop_NTPase,tigrfam_Rad50_eukaryotes	pfam_Rad50_Zn_hook,superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	-	no_errors	RAD50	HGNC	ENSG00000113522				25	0	0	7	6	46.1538
ZCCHC10	0	genome.wustl.edu	37	5	132335879	132335879	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	132335879	132335879	G	-	DEL	ZCCHC10	ENST00000513541	human	ensembl	74_37	-1	putative	frame_shift_del	c.284	p.P95fs	0.000	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC10	HGNC	ENSG00000155329				84	0	0	38	15	28.3019
H2AFY	0	genome.wustl.edu	37	5	134679016	134679016	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	134679016	134679016	T	-	DEL	H2AFY	ENST00000511689	human	ensembl	74_37	-1	known	frame_shift_del	c.887	p.N296fs	1.000	pfam_Macro_dom,smart_Macro_dom,pirsf_Core_histone_macro-H2A,pfscan_Macro_dom	pfam_Macro_dom,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_Macro_dom,pirsf_Core_histone_macro-H2A,prints_Histone_H2A,pfscan_Macro_dom	-	no_errors	H2AFY	HGNC	ENSG00000113648				227	0	0	82	31	27.4336
PCDHGC3	0	genome.wustl.edu	37	5	140857742	140857742	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	140857742	140857742	A	-	DEL	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	frame_shift_del	c.2059	p.N689fs	0.998	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				415	0	0	177	63	26.25
ARAP3	0	genome.wustl.edu	37	5	141052870	141052870	+	RNA	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	141052870	141052870	G	-	DEL	ARAP3	ENST00000524066	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ARAP3	HGNC	ENSG00000120318				17	0	0	15	14	48.2759
TCERG1	0	genome.wustl.edu	37	5	145883505	145883506	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	145883505	145883506	GA	-	DEL	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	frame_shift_del	c.2666_2667	p.E892fs	1.000:0.891	superfamily_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				147	0	0	36	12	25
LARP1	0	genome.wustl.edu	37	5	154181822	154181822	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	154181822	154181822	G	-	DEL	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	frame_shift_del	c.1741	p.D583fs	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				174	0	0	66	12	15.3846
GEMIN5	0	genome.wustl.edu	37	5	154304058	154304058	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	154304058	154304058	T	-	DEL	GEMIN5	ENST00000285873	human	ensembl	74_37	-1	known	frame_shift_del	c.1350	p.V451fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GEMIN5	HGNC	ENSG00000082516				431	0	0	140	62	30.6931
SPDL1	0	genome.wustl.edu	37	5	169015404	169015404	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	169015404	169015404	A	-	DEL	SPDL1	ENST00000510751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SPDL1	HGNC	ENSG00000040275				81	0	0	22	8	26.6667
HNRNPAB	0	genome.wustl.edu	37	5	177637177	177637194	+	In_Frame_Del	DEL	CAGGGCTACGGCTACCAG	CAGGGCTACGGCTACCAG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CAGGGCTACGGCTACCAG	CAGGGCTACGGCTACCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	177637177	177637194	CAGGGCTACGGCTACCAG	-	DEL	HNRNPAB	ENST00000358344	human	ensembl	74_37	+1	known	in_frame_del	c.832_849	p.GYQQGY281in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPAB	HGNC	ENSG00000197451				169	0	0	47	7	12.963
FLT4	0	genome.wustl.edu	37	5	180058748	180058748	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	180058748	180058748	G	-	DEL	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	frame_shift_del	c.89	p.P30fs	0.998	pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				75	0	0	15	10	40
C5orf22	0	genome.wustl.edu	37	5	31541435	31541435	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	31541435	31541435	T	-	DEL	C5orf22	ENST00000325366	human	ensembl	74_37	+1	known	frame_shift_del	c.918	p.L307fs	0.996	superfamily_ICAT	superfamily_ICAT	-	no_errors	C5orf22	HGNC	ENSG00000082213				78	0	0	29	13	30.9524
SPEF2	0	genome.wustl.edu	37	5	35705894	35705894	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	35705894	35705894	A	-	DEL	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	frame_shift_del	c.2649	p.K886fs	0.129	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				28	0	0	19	7	26.9231
SPEF2	0	genome.wustl.edu	37	5	35779342	35779343	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	35779342	35779343	-	C	INS	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	frame_shift_ins	c.4341_4342	p.S1449fs	0.045:0.050	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				93	0	0	65	18	21.6867
NIPBL	0	genome.wustl.edu	37	5	36985083	36985083	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	36985083	36985083	A	-	DEL	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	frame_shift_del	c.1801	p.K603fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				110	1	0.900901	45	20	30.7692
C5orf42	0	genome.wustl.edu	37	5	37169238	37169238	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	37169238	37169238	T	-	DEL	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	frame_shift_del	c.6888	p.E2297fs	0.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				86	0	0	59	20	25.3165
HCN1	0	genome.wustl.edu	37	5	45695957	45695957	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	45695957	45695957	C	-	DEL	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	frame_shift_del	c.239	p.G80fs	0.823	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				28	0	0	12	3	20
KIF2A	0	genome.wustl.edu	37	5	61648515	61648515	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	61648515	61648515	A	-	DEL	KIF2A	ENST00000407818	human	ensembl	74_37	+1	known	frame_shift_del	c.435	p.K147fs	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796				42	0	0	13	7	35
RGS7BP	0	genome.wustl.edu	37	5	63905019	63905019	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	63905019	63905019	C	-	DEL	RGS7BP	ENST00000334025	human	ensembl	74_37	+1	known	frame_shift_del	c.714	p.L240fs	1.000	NULL	NULL	-	no_errors	RGS7BP	HGNC	ENSG00000186479				127	0	0	48	13	21.3115
RAD17	0	genome.wustl.edu	37	5	68665244	68665244	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	68665244	68665244	C	-	DEL	RAD17	ENST00000514066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RAD17	HGNC	ENSG00000152942				74	0	0	7	10	58.8235
WDR41	0	genome.wustl.edu	37	5	76728856	76728856	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	76728856	76728856	A	-	DEL	WDR41	ENST00000512033	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	WDR41	HGNC	ENSG00000164253				31	0	0	20	5	20
MSH3	0	genome.wustl.edu	37	5	79970915	79970916	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	79970915	79970916	AA	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.1141_1142	p.K383fs	0.982:0.892	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				305	0	0	119	40	25.1572
HAPLN1	0	genome.wustl.edu	37	5	82940273	82940273	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	82940273	82940273	C	-	DEL	HAPLN1	ENST00000274341	human	ensembl	74_37	-1	known	frame_shift_del	c.684	p.Q229fs	0.996	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN1	HGNC	ENSG00000145681				139	0	0	62	12	16.2162
RHOBTB3	0	genome.wustl.edu	37	5	95067839	95067839	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	5	95067839	95067839	T	-	DEL	RHOBTB3	ENST00000506817	human	ensembl	74_37	+1	putative	frame_shift_del	c.279	p.S96fs	0.013	NULL	NULL	-	no_errors	RHOBTB3	HGNC	ENSG00000164292				29	0	0	11	4	26.6667
TMEM14B	0	genome.wustl.edu	37	6	10756864	10756864	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	10756864	10756864	A	-	DEL	TMEM14B	ENST00000486421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210				13	0	0	4	8	66.6667
SOBP	0	genome.wustl.edu	37	6	107956439	107956439	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	107956439	107956439	G	-	DEL	SOBP	ENST00000317357	human	ensembl	74_37	+1	known	frame_shift_del	c.2391	p.G799fs	0.986	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320				156	0	0	69	19	21.5909
ZBTB24	0	genome.wustl.edu	37	6	109802728	109802729	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	109802728	109802729	-	T	INS	ZBTB24	ENST00000230122	human	ensembl	74_37	-1	known	frame_shift_ins	c.502_501	p.V167fs	0.996:0.993	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB24	HGNC	ENSG00000112365				338	1	0.294985	153	35	18.617
SLC16A10	0	genome.wustl.edu	37	6	111498763	111498763	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	111498763	111498763	A	-	DEL	SLC16A10	ENST00000368851	human	ensembl	74_37	+1	known	frame_shift_del	c.837	p.I282fs	0.651	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394				111	0	0	58	10	14.7059
COL10A1	0	genome.wustl.edu	37	6	116441750	116441750	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	116441750	116441750	G	-	DEL	COL10A1	ENST00000243222	human	ensembl	74_37	-1	known	frame_shift_del	c.1529	p.P510fs	1.000	pfam_Collagen	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL10A1	HGNC	ENSG00000123500				59	0	0	25	6	19.3548
RSPH4A	0	genome.wustl.edu	37	6	116951612	116951612	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	116951612	116951612	C	-	DEL	RSPH4A	ENST00000229554	human	ensembl	74_37	+1	known	frame_shift_del	c.1813	p.W607fs	0.924	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834				175	0	0	71	22	23.6559
ADTRP	0	genome.wustl.edu	37	6	11714640	11714643	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	11714640	11714643	AAAA	-	DEL	ADTRP	ENST00000512139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.001:0.000	-	-	-	no_errors	ADTRP	HGNC	ENSG00000111863				43	0	0	14	15	51.7241
FOXQ1	0	genome.wustl.edu	37	6	1313297	1313297	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	1313297	1313297	C	-	DEL	FOXQ1	ENST00000296839	human	ensembl	74_37	+1	known	frame_shift_del	c.358	p.Y122fs	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXQ1	HGNC	ENSG00000164379				72	0	0	18	9	33.3333
AKAP7	0	genome.wustl.edu	37	6	131481276	131481276	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	131481276	131481276	A	-	DEL	AKAP7	ENST00000368123	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.K57fs	0.449	pfam_Kinase-A_anchor_nucl_local_sig	pfam_Kinase-A_anchor_nucl_local_sig,pfam_Kinase-A_anchor_RI-RII-bd_dom,superfamily_RNA_ligase/cNuc_Pdiesterase	-	no_errors	AKAP7	HGNC	ENSG00000118507				89	0	0	59	14	19.1781
MED23	0	genome.wustl.edu	37	6	131917389	131917389	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	131917389	131917389	T	-	DEL	MED23	ENST00000479213	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MED23	HGNC	ENSG00000112282				27	0	0	15	13	46.4286
MED23	0	genome.wustl.edu	37	6	131948470	131948473	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	131948470	131948473	AAAA	-	DEL	MED23	ENST00000489888	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.004:0.006:0.011	-	-	-	no_errors	MED23	HGNC	ENSG00000112282				72	0	0	22	10	31.25
HECA	0	genome.wustl.edu	37	6	139488146	139488147	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	139488146	139488147	-	G	INS	HECA	ENST00000367658	human	ensembl	74_37	+1	known	frame_shift_ins	c.997_998	p.H336fs	1.000:1.000	superfamily_Glycoside_hydrolase_SF	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406				156	0	0	56	19	25.3333
PLAGL1	0	genome.wustl.edu	37	6	144262630	144262630	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	144262630	144262630	G	-	DEL	PLAGL1	ENST00000354765	human	ensembl	74_37	-1	known	frame_shift_del	c.1323	p.I442fs	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL1	HGNC	ENSG00000118495				82	0	0	27	9	25
JARID2	0	genome.wustl.edu	37	6	15496722	15496722	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	15496722	15496722	G	-	DEL	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	frame_shift_del	c.1266	p.R425fs	0.963	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				143	0	0	45	12	21.0526
ENSG00000235381	0	genome.wustl.edu	37	6	155575539	155575539	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	155575539	155575539	C	-	DEL	ENSG00000235381	ENST00000435295	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-477D19.2	Clone_based_vega_gene	ENSG00000235381				63	0	0	32	11	25.5814
SYNJ2	0	genome.wustl.edu	37	6	158508009	158508009	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	158508009	158508009	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.3331	p.P1113fs	1.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				96	0	0	34	10	22.7273
WTAP	0	genome.wustl.edu	37	6	160163106	160163106	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	160163106	160163106	T	-	DEL	WTAP	ENST00000462110	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	WTAP	HGNC	ENSG00000146457				50	0	0	15	19	55.8824
PNLDC1	0	genome.wustl.edu	37	6	160230161	160230161	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	160230161	160230161	T	-	DEL	PNLDC1	ENST00000610273	human	ensembl	74_37	+1	known	frame_shift_del	c.721	p.F242fs	0.998	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	PNLDC1	HGNC	ENSG00000146453				122	0	0	52	12	18.75
LPA	0	genome.wustl.edu	37	6	161021956	161021956	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	161021956	161021956	A	-	DEL	LPA	ENST00000316300	human	ensembl	74_37	-1	known	frame_shift_del	c.3120	p.F1040fs	0.002	NULL	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				89	0	0	37	18	32.7273
MLLT4	0	genome.wustl.edu	37	6	168325729	168325729	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	168325729	168325729	A	-	DEL	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	frame_shift_del	c.3036	p.K1014fs	0.004	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				97	0	0	27	15	35.7143
NHLRC1	0	genome.wustl.edu	37	6	18122226	18122226	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	18122226	18122226	A	-	DEL	NHLRC1	ENST00000340650	human	ensembl	74_37	-1	known	frame_shift_del	c.612	p.F204fs	0.001	pfscan_NHL_repeat_subgr	smart_Znf_RING,pfscan_NHL_repeat_subgr,pfscan_Znf_RING	-	no_errors	NHLRC1	HGNC	ENSG00000187566				95	0	0	44	12	21.4286
C6orf195	0	genome.wustl.edu	37	6	2623916	2623916	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	2623916	2623916	C	-	DEL	C6orf195	ENST00000296847	human	ensembl	74_37	-1	known	frame_shift_del	c.141	p.L48fs	0.000	NULL	NULL	-	no_errors	C6orf195	HGNC	ENSG00000164385				116	0	0	64	6	8.57143
OR2H2	0	genome.wustl.edu	37	6	29555792	29555793	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	29555792	29555793	CT	-	DEL	OR2H2	ENST00000383640	human	ensembl	74_37	+1	known	frame_shift_del	c.71_72	p.F26fs	0.037:0.082	pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2H2	HGNC	ENSG00000204657				314	0	0	126	39	23.6364
HLA-F	0	genome.wustl.edu	37	6	29694803	29694803	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	29694803	29694803	T	-	DEL	HLA-F	ENST00000259951	human	ensembl	74_37	+1	known	frame_shift_del	c.1180	p.L396fs	1.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-F	HGNC	ENSG00000204642				412	2	0.483092	159	59	27.0642
HLA-A	0	genome.wustl.edu	37	6	29911900	29911900	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	29911900	29911900	C	-	DEL	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	frame_shift_del	c.621	p.K210fs	0.000	pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				558	0	0	222	57	20.4301
TCF19	0	genome.wustl.edu	37	6	31127312	31127312	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31127312	31127312	C	-	DEL	TCF19	ENST00000376255	human	ensembl	74_37	+1	known	frame_shift_del	c.66	p.A25fs	0.998	superfamily_SMAD_FHA_domain	pfam_FHA_dom,pfam_Znf_PHD-finger,superfamily_SMAD_FHA_domain,superfamily_Znf_FYVE_PHD,smart_FHA_dom,smart_Znf_PHD,pfscan_FHA_dom	-	no_errors	TCF19	HGNC	ENSG00000137310				21	0	0	11	4	26.6667
DDX39B	0	genome.wustl.edu	37	6	31504446	31504446	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31504446	31504446	A	-	DEL	DDX39B	ENST00000417556	human	ensembl	74_37	-1	known	frame_shift_del	c.492	p.F164fs	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX39B	HGNC	ENSG00000198563				110	0	0	40	13	24.5283
PRRC2A	0	genome.wustl.edu	37	6	31597337	31597338	+	In_Frame_Ins	INS	-	-	AGC			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31597337	31597338	-	AGC	INS	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	in_frame_ins	c.1969_1970	p.661in_frame_insQ	1.000:1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				463	0	0	250	57	18.5668
SLC44A4	0	genome.wustl.edu	37	6	31832357	31832360	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31832357	31832360	AAAA	-	DEL	SLC44A4	ENST00000487680	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.055:0.066:0.070:0.080	-	-	-	no_errors	SLC44A4	HGNC	ENSG00000204385				74	0	0	23	25	52.0833
EHMT2	0	genome.wustl.edu	37	6	31852462	31852462	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31852462	31852462	G	-	DEL	EHMT2	ENST00000395728	human	ensembl	74_37	-1	known	frame_shift_del	c.2734	p.L912fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371				62	0	0	20	8	28.5714
EHMT2	0	genome.wustl.edu	37	6	31864887	31864887	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	31864887	31864887	C	-	DEL	EHMT2	ENST00000395728	human	ensembl	74_37	-1	known	frame_shift_del	c.93	p.H33fs	0.001	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371				16	0	0	16	4	20
TNXB	0	genome.wustl.edu	37	6	32015785	32015786	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	32015785	32015786	-	A	INS	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	frame_shift_ins	c.10044_10043	p.D3349fs	0.042:0.051	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				157	0	0	49	11	18.3333
RXRB	0	genome.wustl.edu	37	6	33164164	33164164	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	33164164	33164164	C	-	DEL	RXRB	ENST00000413614	human	ensembl	74_37	-1	known	frame_shift_del	c.752	p.G251fs	0.001	NULL	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	RXRB	HGNC	ENSG00000204231				246	0	0	78	29	27.1028
CDKN1A	0	genome.wustl.edu	37	6	36652118	36652118	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	36652118	36652118	G	-	DEL	CDKN1A	ENST00000448526	human	ensembl	74_37	+1	known	frame_shift_del	c.342	p.R117fs	0.000	NULL	pfam_CDI	-	no_errors	CDKN1A	HGNC	ENSG00000124762				56	0	0	18	8	30.7692
TBC1D22B	0	genome.wustl.edu	37	6	37250062	37250063	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	37250062	37250063	-	C	INS	TBC1D22B	ENST00000373491	human	ensembl	74_37	+1	known	frame_shift_ins	c.523_524	p.M178fs	1.000:0.996	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491				131	0	0	39	15	27.7778
PRPF4B	0	genome.wustl.edu	37	6	4031881	4031881	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	4031881	4031881	A	-	DEL	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	frame_shift_del	c.130	p.K46fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				59	0	0	38	26	40.625
CUL9	0	genome.wustl.edu	37	6	43184211	43184212	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	43184211	43184212	CT	-	DEL	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	frame_shift_del	c.6252_6253	p.C2087fs	0.001:0.003	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				246	0	0	128	46	26.4368
HCRTR2	0	genome.wustl.edu	37	6	55039410	55039411	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	55039410	55039411	-	C	INS	HCRTR2	ENST00000370862	human	ensembl	74_37	+1	known	frame_shift_ins	c.25_26	p.C12fs	0.997:1.000	NULL	pfam_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	-	no_errors	HCRTR2	HGNC	ENSG00000137252				264	0	0	87	23	20.9091
SLC17A5	0	genome.wustl.edu	37	6	74351590	74351590	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	74351590	74351590	A	-	DEL	SLC17A5	ENST00000355773	human	ensembl	74_37	-1	known	frame_shift_del	c.349	p.Y117fs	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A5	HGNC	ENSG00000119899				270	2	0.735294	131	39	22.9412
EEF1E1	0	genome.wustl.edu	37	6	8090388	8090388	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	8090388	8090388	A	-	DEL	EEF1E1	ENST00000507463	human	ensembl	74_37	-1	putative	frame_shift_del	c.415	p.S139fs	0.001	NULL	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	EEF1E1	HGNC	ENSG00000124802				54	0	0	33	10	23.2558
KIAA1009	0	genome.wustl.edu	37	6	84870551	84870551	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	84870551	84870551	T	-	DEL	KIAA1009	ENST00000403245	human	ensembl	74_37	-1	known	frame_shift_del	c.2761	p.I921fs	1.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315				125	1	0.793651	42	12	22.2222
TBX18	0	genome.wustl.edu	37	6	85466490	85466490	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	85466490	85466490	C	-	DEL	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	frame_shift_del	c.697	p.E233fs	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				88	0	0	43	19	30.6452
TBX18	0	genome.wustl.edu	37	6	85472405	85472405	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	85472405	85472405	G	-	DEL	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	frame_shift_del	c.354	p.K119fs	0.937	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				59	0	0	25	10	28.5714
MAP3K7	0	genome.wustl.edu	37	6	91226170	91226170	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	6	91226170	91226170	A	-	DEL	MAP3K7	ENST00000479630	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.947	-	-	-	no_errors	MAP3K7	HGNC	ENSG00000135341				58	0	0	22	24	52.1739
RINT1	0	genome.wustl.edu	37	7	105182902	105182902	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	105182902	105182902	A	-	DEL	RINT1	ENST00000257700	human	ensembl	74_37	+1	known	frame_shift_del	c.321	p.N109fs	1.000	NULL	pfam_RINT1_TIP1	-	no_errors	RINT1	HGNC	ENSG00000135249				126	0	0	51	17	25
GPR22	0	genome.wustl.edu	37	7	107115558	107115558	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	107115558	107115558	T	-	DEL	GPR22	ENST00000304402	human	ensembl	74_37	+1	known	frame_shift_del	c.1053	p.L353fs	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR22	HGNC	ENSG00000172209				100	0	0	59	18	23.3766
SLC26A4	0	genome.wustl.edu	37	7	107323940	107323940	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	107323940	107323940	A	-	DEL	SLC26A4	ENST00000265715	human	ensembl	74_37	+1	known	frame_shift_del	c.959	p.N322fs	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137				82	0	0	39	15	27.7778
LAMB1	0	genome.wustl.edu	37	7	107594140	107594141	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	107594140	107594141	-	C	INS	LAMB1	ENST00000222399	human	ensembl	74_37	-1	known	frame_shift_ins	c.2914_2913	p.S971fs	0.000:0.002	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,superfamily_P-loop_NTPase,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136				167	0	0	66	10	13.1579
DOCK4	0	genome.wustl.edu	37	7	111580273	111580273	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	111580273	111580273	T	-	DEL	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	frame_shift_del	c.869	p.K290fs	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				242	0	0	112	38	25.3333
IFRD1	0	genome.wustl.edu	37	7	112112338	112112339	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	112112338	112112339	-	A	INS	IFRD1	ENST00000005558	human	ensembl	74_37	+1	known	frame_shift_ins	c.1106_1107	p.H372fs	1.000:1.000	NULL	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD1	HGNC	ENSG00000006652				163	0	0	63	34	35.0515
CADPS2	0	genome.wustl.edu	37	7	122194676	122194676	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	122194676	122194676	T	-	DEL	CADPS2	ENST00000449022	human	ensembl	74_37	-1	known	frame_shift_del	c.1403	p.N468fs	1.000	superfamily_C2_dom	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803				53	0	0	21	8	27.5862
RBM28	0	genome.wustl.edu	37	7	127979377	127979378	+	Splice_Site	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	127979377	127979378	-	A	INS	RBM28	ENST00000223073	human	ensembl	74_37	-1	known	splice_site_ins	c.278-3_278-2	e3-2	0.999:0.000	-	-	-	no_errors	RBM28	HGNC	ENSG00000106344				211	0	0	84	41	32.8
C7orf49	0	genome.wustl.edu	37	7	134851448	134851448	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	134851448	134851448	C	-	DEL	C7orf49	ENST00000393114	human	ensembl	74_37	-1	known	frame_shift_del	c.389	p.G130fs	0.000	NULL	NULL	-	no_errors	C7orf49	HGNC	ENSG00000122783				169	0	0	71	25	26.0417
BRAF	0	genome.wustl.edu	37	7	140482927	140482927	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	140482927	140482927	G	-	DEL	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	frame_shift_del	c.1208	p.P403fs	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				79	0	0	28	8	22.2222
MGAM	0	genome.wustl.edu	37	7	141800654	141800654	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	141800654	141800654	G	-	DEL	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	frame_shift_del	c.5239	p.G1748fs	0.004	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				32	0	0	16	6	27.2727
SSPO	0	genome.wustl.edu	37	7	149512268	149512268	+	RNA	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	149512268	149512268	G	-	DEL	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				81	0	0	27	6	18.1818
NOS3	0	genome.wustl.edu	37	7	150707211	150707211	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	150707211	150707211	C	-	DEL	NOS3	ENST00000297494	human	ensembl	74_37	+1	known	frame_shift_del	c.2521	p.G843fs	1.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS3	HGNC	ENSG00000164867				92	0	0	35	17	32.6923
INTS1	0	genome.wustl.edu	37	7	1527075	1527075	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	1527075	1527075	G	-	DEL	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	frame_shift_del	c.2956	p.R986fs	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				51	0	0	16	3	15.7895
DNAH11	0	genome.wustl.edu	37	7	21631141	21631141	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	21631141	21631141	A	-	DEL	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	frame_shift_del	c.2613	p.K873fs	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				145	0	0	36	20	35.7143
DNAH11	0	genome.wustl.edu	37	7	21939668	21939669	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	21939668	21939669	-	A	INS	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	frame_shift_ins	c.13254_13255	p.T4420fs	1.000:1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				69	0	0	22	11	33.3333
HOXA11	0	genome.wustl.edu	37	7	27224538	27224538	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	27224538	27224538	G	-	DEL	HOXA11	ENST00000006015	human	ensembl	74_37	-1	known	frame_shift_del	c.226	p.R76fs	1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA11	HGNC	ENSG00000005073				165	0	0	53	22	29.3333
CREB5	0	genome.wustl.edu	37	7	28848864	28848864	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	28848864	28848864	G	-	DEL	CREB5	ENST00000357727	human	ensembl	74_37	+1	known	frame_shift_del	c.1087	p.R365fs	1.000	pirsf_TF_cAMP-dep	pfam_bZIP,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	CREB5	HGNC	ENSG00000146592				182	0	0	39	15	27.7778
GLI3	0	genome.wustl.edu	37	7	42003846	42003846	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	42003846	42003846	A	-	DEL	GLI3	ENST00000479210	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.968	-	-	-	no_errors	GLI3	HGNC	ENSG00000106571				15	0	0	13	7	35
C7orf57	0	genome.wustl.edu	37	7	48086205	48086205	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	48086205	48086205	A	-	DEL	C7orf57	ENST00000348904	human	ensembl	74_37	+1	known	frame_shift_del	c.499	p.K169fs	1.000	NULL	NULL	-	no_errors	C7orf57	HGNC	ENSG00000164746				32	0	0	12	6	33.3333
RADIL	0	genome.wustl.edu	37	7	4841484	4841484	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	4841484	4841484	G	-	DEL	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	frame_shift_del	c.2642	p.P881fs	0.001	NULL	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927				15	0	0	10	3	23.0769
ENSG00000232415	0	genome.wustl.edu	37	7	73474015	73474015	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	73474015	73474015	A	-	DEL	ENSG00000232415	ENST00000435932	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CTB-51J22.1	Clone_based_vega_gene	ENSG00000232415				14	0	0	10	6	37.5
RHBDD2	0	genome.wustl.edu	37	7	75512837	75512838	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	75512837	75512838	AA	-	DEL	RHBDD2	ENST00000467406	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.010:0.011	-	-	-	no_errors	RHBDD2	HGNC	ENSG00000005486				10	0	0	7	6	46.1538
POR	0	genome.wustl.edu	37	7	75614451	75614451	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	75614451	75614451	C	-	DEL	POR	ENST00000461988	human	ensembl	74_37	+1	known	frame_shift_del	c.1324	p.I444fs	1.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	POR	HGNC	ENSG00000127948				76	0	0	28	12	30
PHTF2	0	genome.wustl.edu	37	7	77569580	77569581	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	77569580	77569581	-	T	INS	PHTF2	ENST00000248550	human	ensembl	74_37	+1	known	frame_shift_ins	c.1701_1702	p.L569fs	1.000:1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF2	HGNC	ENSG00000006576				206	0	0	55	23	29.4872
PCLO	0	genome.wustl.edu	37	7	82546109	82546111	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	82546109	82546111	CTC	-	DEL	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	in_frame_del	c.11193_11191	p.E3731in_frame_del	0.974:1.000:1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				197	0	0	63	19	23.1707
FZD1	0	genome.wustl.edu	37	7	90894984	90894984	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	90894984	90894984	G	-	DEL	FZD1	ENST00000287934	human	ensembl	74_37	+1	known	frame_shift_del	c.789	p.G265fs	0.417	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD1	HGNC	ENSG00000157240				20	0	0	14	5	26.3158
AKAP9	0	genome.wustl.edu	37	7	91651608	91651608	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	91651608	91651608	A	-	DEL	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_del	c.3930	p.E1312fs	0.005	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				134	0	0	58	12	17.1429
CYP51A1	0	genome.wustl.edu	37	7	91743136	91743137	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	91743136	91743137	-	C	INS	CYP51A1	ENST00000003100	human	ensembl	74_37	-1	known	frame_shift_ins	c.1373_1372	p.E458fs	1.000:1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP51A1	HGNC	ENSG00000001630				134	0	0	52	19	26.7606
ASNS	0	genome.wustl.edu	37	7	97488171	97488171	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	97488171	97488171	A	-	DEL	ASNS	ENST00000175506	human	ensembl	74_37	-1	known	frame_shift_del	c.770	p.L257fs	1.000	pfam_Asn_synthase,tigrfam_Asn_synth_AEB	pfam_Asn_synthase,pfam_GATase_dom,tigrfam_Asn_synth_AEB	-	no_errors	ASNS	HGNC	ENSG00000070669				130	0	0	62	10	13.8889
ZKSCAN5	0	genome.wustl.edu	37	7	99103706	99103706	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	99103706	99103706	C	-	DEL	ZKSCAN5	ENST00000326775	human	ensembl	74_37	+1	known	frame_shift_del	c.39	p.P15fs	0.980	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652				216	0	0	65	27	29.3478
AZGP1	0	genome.wustl.edu	37	7	99564501	99564501	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	99564501	99564501	C	-	DEL	AZGP1	ENST00000483612	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AZGP1	HGNC	ENSG00000160862				45	0	0	24	11	31.4286
GPC2	0	genome.wustl.edu	37	7	99771554	99771554	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	7	99771554	99771554	C	-	DEL	GPC2	ENST00000292377	human	ensembl	74_37	-1	known	frame_shift_del	c.796	p.V266fs	0.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC2	HGNC	ENSG00000213420				336	1	0.296736	132	38	22.3529
VPS13B	0	genome.wustl.edu	37	8	100654474	100654474	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	100654474	100654474	A	-	DEL	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	frame_shift_del	c.5731	p.I1913fs	0.452	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				242	1	0.411523	153	45	22.7273
RGS22	0	genome.wustl.edu	37	8	100990178	100990178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	100990178	100990178	T	-	DEL	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	frame_shift_del	c.3486	p.K1162fs	0.010	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				71	0	0	56	18	24.3243
RIMS2	0	genome.wustl.edu	37	8	105235897	105235897	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	105235897	105235897	G	-	DEL	RIMS2	ENST00000339750	human	ensembl	74_37	+1	known	frame_shift_del	c.18	p.G8fs	0.013	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RIMS2	HGNC	ENSG00000176406				37	0	0	28	3	9.67742
TMEM74	0	genome.wustl.edu	37	8	109796600	109796600	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	109796600	109796600	C	-	DEL	TMEM74	ENST00000297459	human	ensembl	74_37	-1	known	frame_shift_del	c.728	p.G243fs	1.000	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841				120	0	0	63	14	18.1818
TATDN1	0	genome.wustl.edu	37	8	125535186	125535186	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	125535186	125535186	T	-	DEL	TATDN1	ENST00000276692	human	ensembl	74_37	-1	known	frame_shift_del	c.80	p.K27fs	1.000	pfam_TatD_family,pirsf_TatD_family	pfam_TatD_family,pirsf_TatD_family	-	no_errors	TATDN1	HGNC	ENSG00000147687				127	0	0	65	19	22.619
MTSS1	0	genome.wustl.edu	37	8	125597329	125597329	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	125597329	125597329	T	-	DEL	MTSS1	ENST00000518547	human	ensembl	74_37	-1	known	frame_shift_del	c.459	p.R155fs	1.000	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873				250	1	0.398406	116	37	24.183
DLC1	0	genome.wustl.edu	37	8	12957997	12957997	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	12957997	12957997	G	-	DEL	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	frame_shift_del	c.1849	p.R617fs	0.834	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				172	0	0	89	23	20.5357
ASAP1	0	genome.wustl.edu	37	8	131226887	131226887	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	131226887	131226887	A	-	DEL	ASAP1	ENST00000357668	human	ensembl	74_37	-1	known	frame_shift_del	c.320	p.L107fs	1.000	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_errors	ASAP1	HGNC	ENSG00000153317				106	0	0	63	16	20.2532
WISP1	0	genome.wustl.edu	37	8	134232956	134232957	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	134232956	134232957	-	C	INS	WISP1	ENST00000250160	human	ensembl	74_37	+1	known	frame_shift_ins	c.482_483	p.R164fs	0.992:0.918	pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415				128	0	0	60	15	20
BAI1	0	genome.wustl.edu	37	8	143562668	143562668	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	143562668	143562668	C	-	DEL	BAI1	ENST00000323289	human	ensembl	74_37	+1	known	frame_shift_del	c.1882	p.T630fs	1.000	smart_GPCR_2_extracellular_dom,prints_GPCR_2_brain-spec_angio_inhib,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790				178	0	0	76	16	17.3913
OPLAH	0	genome.wustl.edu	37	8	145109542	145109542	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	145109542	145109542	G	-	DEL	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	frame_shift_del	c.2608	p.H870fs	1.000	pfam_Hydantoinase_B	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				80	0	0	22	7	24.1379
EPHX2	0	genome.wustl.edu	37	8	27364392	27364393	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	27364392	27364393	-	T	INS	EPHX2	ENST00000521400	human	ensembl	74_37	+1	known	frame_shift_ins	c.541_542	p.L183fs	0.712:0.706	pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	pfam_AB_hydrolase_1,pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_Epox_hydrolase-like,prints_HAD-SF_hydro_IA,prints_AB_hydrolase_1,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	EPHX2	HGNC	ENSG00000120915				118	1	0.840336	60	15	20
NUGGC	0	genome.wustl.edu	37	8	27888776	27888776	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	27888776	27888776	T	-	DEL	NUGGC	ENST00000341513	human	ensembl	74_37	-1	known	frame_shift_del	c.1892	p.N631fs	0.005	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	NUGGC	HGNC	ENSG00000189233				356	1	0.280112	152	38	20
NRG1	0	genome.wustl.edu	37	8	32607050	32607050	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	32607050	32607050	T	-	DEL	NRG1	ENST00000523681	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NRG1	HGNC	ENSG00000157168				81	0	0	53	15	22.0588
KCNU1	0	genome.wustl.edu	37	8	36768517	36768518	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	36768517	36768518	-	C	INS	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	frame_shift_ins	c.2401_2402	p.P804fs	0.083:0.116	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				151	0	0	90	11	10.8911
AP3M2	0	genome.wustl.edu	37	8	42026641	42026641	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	42026641	42026641	A	-	DEL	AP3M2	ENST00000520685	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	AP3M2	HGNC	ENSG00000070718				25	0	0	20	9	31.0345
FNTA	0	genome.wustl.edu	37	8	42924786	42924786	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	42924786	42924786	A	-	DEL	FNTA	ENST00000302279	human	ensembl	74_37	+1	known	frame_shift_del	c.490	p.N165fs	1.000	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	-	no_errors	FNTA	HGNC	ENSG00000168522				42	0	0	34	8	19.0476
ENSG00000199405	0	genome.wustl.edu	37	8	56815414	56815414	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	56815414	56815414	T	-	DEL	ENSG00000199405	ENST00000362535	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.582	-	-	-	no_errors	SNORA1	RFAM	ENSG00000199405				14	0	0	13	6	31.5789
SDCBP	0	genome.wustl.edu	37	8	59492251	59492251	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	59492251	59492251	A	-	DEL	SDCBP	ENST00000260130	human	ensembl	74_37	+1	known	frame_shift_del	c.648	p.I218fs	0.992	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP	HGNC	ENSG00000137575				141	0	0	116	25	17.7305
RAB2A	0	genome.wustl.edu	37	8	61533311	61533311	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	61533311	61533311	G	-	DEL	RAB2A	ENST00000262646	human	ensembl	74_37	+1	known	frame_shift_del	c.622	p.G209fs	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB2A	HGNC	ENSG00000104388				149	0	0	57	11	16.1765
ERICH1	0	genome.wustl.edu	37	8	623865	623865	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	623865	623865	T	-	DEL	ERICH1	ENST00000262109	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.R163fs	0.988	NULL	NULL	-	no_errors	ERICH1	HGNC	ENSG00000104714				103	0	0	88	21	19.2661
CYP7B1	0	genome.wustl.edu	37	8	65528783	65528784	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	65528783	65528784	-	T	INS	CYP7B1	ENST00000310193	human	ensembl	74_37	-1	known	frame_shift_ins	c.315_314	p.N105fs	0.066:0.942	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817				43	0	0	17	5	22.7273
CSPP1	0	genome.wustl.edu	37	8	68076631	68076631	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	68076631	68076631	A	-	DEL	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	frame_shift_del	c.2701	p.N903fs	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				119	1	0.833333	65	16	19.7531
PREX2	0	genome.wustl.edu	37	8	68992721	68992721	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	68992721	68992721	T	-	DEL	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	frame_shift_del	c.1686	p.S565fs	0.015	smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				64	0	0	48	11	18.6441
SULF1	0	genome.wustl.edu	37	8	70488249	70488249	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	70488249	70488249	G	-	DEL	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	frame_shift_del	c.217	p.A75fs	0.999	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				47	0	0	46	8	14.8148
TRPA1	0	genome.wustl.edu	37	8	72958792	72958792	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	72958792	72958792	T	-	DEL	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	frame_shift_del	c.2017	p.T673fs	0.001	NULL	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				211	1	0.471698	62	35	36.0825
ZFHX4	0	genome.wustl.edu	37	8	77617546	77617547	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	77617546	77617547	-	G	INS	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_ins	c.1223_1224	p.L411fs	1.000:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				61	0	0	49	8	14.0351
RMDN1	0	genome.wustl.edu	37	8	87487103	87487105	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	87487103	87487105	AGC	-	DEL	RMDN1	ENST00000406452	human	ensembl	74_37	-1	known	in_frame_del	c.840_838	p.A280in_frame_del	0.756:0.985:1.000	NULL	NULL	-	no_errors	RMDN1	HGNC	ENSG00000176623				103	0	0	81	18	18.1818
CNGB3	0	genome.wustl.edu	37	8	87645015	87645015	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	87645015	87645015	A	-	DEL	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	frame_shift_del	c.1285	p.S429fs	0.003	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289				61	0	0	27	10	27.027
ENSG00000253722	0	genome.wustl.edu	37	8	94745548	94745548	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	94745548	94745548	A	-	DEL	ENSG00000253722	ENST00000517998	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-10N23.4	Clone_based_vega_gene	ENSG00000253722				20	0	0	11	5	31.25
KIAA1429	0	genome.wustl.edu	37	8	95531563	95531563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	95531563	95531563	A	-	DEL	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	frame_shift_del	c.2163	p.F721fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				101	0	0	90	23	20.354
TNKS	0	genome.wustl.edu	37	8	9623842	9623842	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	9623842	9623842	A	-	DEL	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	frame_shift_del	c.3647	p.N1217fs	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				162	0	0	83	19	18.6275
SNORA72	0	genome.wustl.edu	37	8	99054504	99054504	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	99054504	99054504	T	-	DEL	SNORA72	ENST00000501016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	KB-1208A12.3	Clone_based_vega_gene	ENSG00000245970				14	0	0	27	11	28.9474
SNORA72	0	genome.wustl.edu	37	8	99054837	99054839	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	8	99054837	99054839	AAA	-	DEL	SNORA72	ENST00000501016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.049:0.047:0.041	-	-	-	no_errors	KB-1208A12.3	Clone_based_vega_gene	ENSG00000245970				71	0	0	52	16	23.5294
SMC2	0	genome.wustl.edu	37	9	106862422	106862422	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	106862422	106862422	A	-	DEL	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	frame_shift_del	c.529	p.I179fs	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				55	0	0	18	10	35.7143
NIPSNAP3A	0	genome.wustl.edu	37	9	107513348	107513348	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	107513348	107513348	A	-	DEL	NIPSNAP3A	ENST00000374767	human	ensembl	74_37	+1	known	frame_shift_del	c.172	p.N59fs	1.000	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	-	no_errors	NIPSNAP3A	HGNC	ENSG00000136783				276	0	0	86	32	27.1186
PTGR1	0	genome.wustl.edu	37	9	114359602	114359602	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	114359602	114359602	T	-	DEL	PTGR1	ENST00000309195	human	ensembl	74_37	-1	known	frame_shift_del	c.101	p.N34fs	0.995	superfamily_GroES-like,smart_PKS_ER,tigrfam_B4_12hDH	pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER,tigrfam_B4_12hDH	-	no_errors	PTGR1	HGNC	ENSG00000106853				39	0	0	14	7	33.3333
POLE3	0	genome.wustl.edu	37	9	116171195	116171195	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	116171195	116171195	T	-	DEL	POLE3	ENST00000374169	human	ensembl	74_37	-1	known	frame_shift_del	c.340	p.T114fs	0.429	superfamily_Histone-fold	pfam_CBFA_NFYB_domain,superfamily_Histone-fold	-	no_errors	POLE3	HGNC	ENSG00000148229				29	0	0	24	18	42.8571
PHF19	0	genome.wustl.edu	37	9	123620208	123620208	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	123620208	123620208	C	-	DEL	PHF19	ENST00000487555	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	PHF19	HGNC	ENSG00000119403				21	0	0	18	8	30.7692
RABGAP1	0	genome.wustl.edu	37	9	125861042	125861042	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	125861042	125861042	A	-	DEL	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	frame_shift_del	c.2782	p.N930fs	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				128	0	0	38	14	26.9231
DENND1A	0	genome.wustl.edu	37	9	126319868	126319868	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	126319868	126319868	T	-	DEL	DENND1A	ENST00000394219	human	ensembl	74_37	-1	known	frame_shift_del	c.878	p.N293fs	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522				74	0	0	11	7	38.8889
ARPC5L	0	genome.wustl.edu	37	9	127639218	127639218	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	127639218	127639218	A	-	DEL	ARPC5L	ENST00000259477	human	ensembl	74_37	+1	known	frame_shift_del	c.461	p.*154fs	1.000	NULL	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	-	no_errors	ARPC5L	HGNC	ENSG00000136950				39	0	0	19	7	26.9231
CDK9	0	genome.wustl.edu	37	9	130550838	130550839	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	130550838	130550839	-	C	INS	CDK9	ENST00000373265	human	ensembl	74_37	+1	known	frame_shift_ins	c.971_972	p.I327fs	1.000:0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK9	HGNC	ENSG00000136807				10	0	0	5	3	37.5
PTGES	0	genome.wustl.edu	37	9	132510954	132510954	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	132510954	132510954	G	-	DEL	PTGES	ENST00000340607	human	ensembl	74_37	-1	known	frame_shift_del	c.189	p.D64fs	0.000	pfam_Membr-assoc_MAPEG	pfam_Membr-assoc_MAPEG	-	no_errors	PTGES	HGNC	ENSG00000148344				52	0	0	15	3	16.6667
PRDM12	0	genome.wustl.edu	37	9	133543700	133543701	+	Frame_Shift_Ins	INS	-	-	GT			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	133543700	133543701	-	GT	INS	PRDM12	ENST00000253008	human	ensembl	74_37	+1	known	frame_shift_ins	c.570_571	p.M190fs	1.000:0.938	smart_SET_dom,pirsf_Znf_PRDM12,pfscan_SET_dom	pfam_Znf_C2H2,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM12,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM12	HGNC	ENSG00000130711				118	1	0.840336	54	10	15.625
ENSG00000236986	0	genome.wustl.edu	37	9	134008392	134008392	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	134008392	134008392	T	-	DEL	ENSG00000236986	ENST00000587264	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-544A12.4	Clone_based_vega_gene	ENSG00000236986				36	0	0	15	10	40
SETX	0	genome.wustl.edu	37	9	135158548	135158549	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	135158548	135158549	AA	-	DEL	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.003	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				22	0	0	2	13	86.6667
TTF1	0	genome.wustl.edu	37	9	135277388	135277388	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	135277388	135277388	T	-	DEL	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	frame_shift_del	c.821	p.K274fs	0.001	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				155	1	0.641026	69	25	26.5957
CEL	0	genome.wustl.edu	37	9	135946658	135946658	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	135946658	135946658	C	-	DEL	CEL	ENST00000372080	human	ensembl	74_37	+1	known	frame_shift_del	c.1778	p.V596fs	0.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835				16	0	0	8	4	33.3333
CEL	0	genome.wustl.edu	37	9	135946987	135946988	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	135946987	135946988	-	C	INS	CEL	ENST00000372080	human	ensembl	74_37	+1	known	frame_shift_ins	c.2107_2108	p.V706fs	0.038:0.002	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835				26	0	0	0	9	100
BRD3	0	genome.wustl.edu	37	9	136905314	136905316	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	136905314	136905316	CTT	-	DEL	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	in_frame_del	c.1485_1483	p.K495in_frame_del	1.000:1.000:1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				14	0	0	1	5	83.3333
BRD3	0	genome.wustl.edu	37	9	136918529	136918529	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	136918529	136918529	G	-	DEL	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	frame_shift_del	c.71	p.P24fs	1.000	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				63	0	0	12	16	57.1429
PTGDS	0	genome.wustl.edu	37	9	139875319	139875322	+	RNA	DEL	CATT	CATT	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CATT	CATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	139875319	139875322	CATT	-	DEL	PTGDS	ENST00000462514	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors	PTGDS	HGNC	ENSG00000107317				28	0	0	12	4	25
C9orf142	0	genome.wustl.edu	37	9	139887322	139887322	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	139887322	139887322	C	-	DEL	C9orf142	ENST00000468484	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.051	-	-	-	no_errors	C9orf142	HGNC	ENSG00000148362				85	0	0	30	17	36.1702
NPDC1	0	genome.wustl.edu	37	9	139934526	139934526	+	RNA	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	139934526	139934526	G	-	DEL	NPDC1	ENST00000472668	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	NPDC1	HGNC	ENSG00000107281				42	0	0	16	4	20
DPP7	0	genome.wustl.edu	37	9	140008718	140008718	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	140008718	140008718	C	-	DEL	DPP7	ENST00000371579	human	ensembl	74_37	-1	known	frame_shift_del	c.298	p.A100fs	0.986	pfam_Peptidase_S28	pfam_Peptidase_S28,pfam_AB_hydrolase_1	-	no_errors	DPP7	HGNC	ENSG00000176978				47	0	0	6	5	45.4545
PNPLA7	0	genome.wustl.edu	37	9	140356679	140356679	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	140356679	140356679	G	-	DEL	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	frame_shift_del	c.3597	p.I1200fs	1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				94	0	0	36	8	18.1818
MIR602	0	genome.wustl.edu	37	9	140732961	140732961	+	RNA	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	140732961	140732961	C	-	DEL	MIR602	ENST00000384960	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.093	-	-	-	no_errors	MIR602	HGNC	ENSG00000207693				135	0	0	52	22	29.7297
PSIP1	0	genome.wustl.edu	37	9	15468955	15468955	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	15468955	15468955	T	-	DEL	PSIP1	ENST00000380733	human	ensembl	74_37	-1	known	frame_shift_del	c.1206	p.I403fs	1.000	pfam_LEDGF	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,prints_Treacle-like_TCS	-	no_errors	PSIP1	HGNC	ENSG00000164985				38	0	0	24	11	31.4286
ADAMTSL1	0	genome.wustl.edu	37	9	18680349	18680350	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	18680349	18680350	-	G	INS	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	frame_shift_ins	c.1176_1177	p.I395fs	1.000:1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				70	0	0	42	8	16
ADAMTSL1	0	genome.wustl.edu	37	9	18829843	18829843	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	18829843	18829843	C	-	DEL	ADAMTSL1	ENST00000388710	human	ensembl	74_37	+1	known	frame_shift_del	c.220	p.Q76fs	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				115	1	0.862069	28	9	24.3243
SMARCA2	0	genome.wustl.edu	37	9	2039777	2039779	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	2039777	2039779	CAG	-	DEL	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	in_frame_del	c.667_669	p.Q226in_frame_del	0.310:0.494:0.625	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				28	0	0	9	7	43.75
PTENP1	0	genome.wustl.edu	37	9	33675365	33675365	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	33675365	33675365	A	-	DEL	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				19	0	0	25	11	30.5556
KIF24	0	genome.wustl.edu	37	9	34256536	34256537	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	34256536	34256537	CA	-	DEL	KIF24	ENST00000379166	human	ensembl	74_37	-1	known	frame_shift_del	c.3069_3068	p.V1023fs	0.000:0.000	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_P-loop_NTPase,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638				174	0	0	76	29	27.619
C9orf131	0	genome.wustl.edu	37	9	35043650	35043650	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	35043650	35043650	C	-	DEL	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	frame_shift_del	c.1024	p.C344fs	0.000	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				772	0	0	240	76	24.0506
ERMP1	0	genome.wustl.edu	37	9	5801291	5801292	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	5801291	5801292	-	T	INS	ERMP1	ENST00000339450	human	ensembl	74_37	-1	known	frame_shift_ins	c.1952_1951	p.T651fs	0.987:0.994	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219				109	0	0	48	11	18.6441
C9orf41	0	genome.wustl.edu	37	9	77614678	77614678	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	77614678	77614678	A	-	DEL	C9orf41	ENST00000376834	human	ensembl	74_37	-1	known	frame_shift_del	c.699	p.F233fs	1.000	pfam_N2227	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017				81	0	0	42	17	28.8136
ENSG00000229454	0	genome.wustl.edu	37	9	88370966	88370966	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	88370966	88370966	T	-	DEL	ENSG00000229454	ENST00000447148	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-202I11.2	Clone_based_vega_gene	ENSG00000229454				15	0	0	12	8	40
IARS	0	genome.wustl.edu	37	9	95003101	95003101	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	95003101	95003101	A	-	DEL	IARS	ENST00000473915	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	IARS	HGNC	ENSG00000196305				22	0	0	17	5	22.7273
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				23	0	0	12	4	25
PTCH1	0	genome.wustl.edu	37	9	98209617	98209617	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	98209617	98209617	G	-	DEL	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	frame_shift_del	c.3921	p.R1308fs	0.441	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				180	1	0.552486	45	23	33.8235
SLC35D2	0	genome.wustl.edu	37	9	99083473	99083474	+	RNA	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	9	99083473	99083474	-	C	INS	SLC35D2	ENST00000490599	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SLC35D2	HGNC	ENSG00000130958				50	0	0	28	15	34.8837
ARMCX1	0	genome.wustl.edu	37	X	100809163	100809163	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	100809163	100809163	T	-	DEL	ARMCX1	ENST00000372829	human	ensembl	74_37	+1	known	frame_shift_del	c.1250	p.F419fs	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947				147	0	0	61	17	21.7949
TMSB15A	0	genome.wustl.edu	37	X	101770012	101770012	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	101770012	101770012	T	-	DEL	TMSB15A	ENST00000289373	human	ensembl	74_37	-1	known	frame_shift_del	c.80	p.N27fs	0.981	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_metazoa	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_metazoa	-	no_errors	TMSB15A	HGNC	ENSG00000158164				279	1	0.357143	105	25	19.2308
GPRASP2	0	genome.wustl.edu	37	X	101971768	101971768	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	101971768	101971768	T	-	DEL	GPRASP2	ENST00000332262	human	ensembl	74_37	+1	known	frame_shift_del	c.1971	p.L659fs	0.004	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301				119	0	0	65	30	31.5789
AMMECR1	0	genome.wustl.edu	37	X	109561058	109561060	+	In_Frame_Del	DEL	CCG	CCG	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	CCG	CCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	109561058	109561060	CCG	-	DEL	AMMECR1	ENST00000262844	human	ensembl	74_37	-1	known	in_frame_del	c.242_240	p.G82in_frame_del	1.000:1.000:0.999	NULL	pfam_AMMECR1_domain,superfamily_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	-	no_errors	AMMECR1	HGNC	ENSG00000101935				9	0	0	5	2	28.5714
DCX	0	genome.wustl.edu	37	X	110654094	110654094	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	110654094	110654094	A	-	DEL	DCX	ENST00000338081	human	ensembl	74_37	-1	known	frame_shift_del	c.109	p.C37fs	0.998	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pirsf_Doublecortin_chordata,pfscan_Doublecortin_dom	-	no_errors	DCX	HGNC	ENSG00000077279				394	0	0	183	19	9.40594
FRMD7	0	genome.wustl.edu	37	X	131214036	131214037	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	131214036	131214037	-	T	INS	FRMD7	ENST00000298542	human	ensembl	74_37	-1	known	frame_shift_ins	c.1048_1047	p.Q349fs	1.000:1.000	NULL	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	FRMD7	HGNC	ENSG00000165694				306	0	0	103	32	23.7037
GPR112	0	genome.wustl.edu	37	X	135426886	135426886	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	135426886	135426886	A	-	DEL	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	frame_shift_del	c.1021	p.T343fs	0.009	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				130	0	0	73	26	26.2626
SPANXN3	0	genome.wustl.edu	37	X	142605149	142605149	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	142605149	142605149	T	-	DEL	SPANXN3	ENST00000370503	human	ensembl	74_37	-1	known	frame_shift_del	c.71	p.N24fs	0.000	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN3	HGNC	ENSG00000189252				288	0	0	103	44	29.932
PRRG3	0	genome.wustl.edu	37	X	150869296	150869297	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	150869296	150869297	-	G	INS	PRRG3	ENST00000370353	human	ensembl	74_37	+1	known	frame_shift_ins	c.487_488	p.R166fs	0.000:0.000	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG3	HGNC	ENSG00000130032				84	0	0	38	9	19.1489
F8	0	genome.wustl.edu	37	X	154158428	154158428	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	154158428	154158428	T	-	DEL	F8	ENST00000360256	human	ensembl	74_37	-1	known	frame_shift_del	c.3637	p.I1213fs	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				66	0	0	27	16	37.2093
SAT1	0	genome.wustl.edu	37	X	23802147	23802147	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	23802147	23802147	A	-	DEL	SAT1	ENST00000379251	human	ensembl	74_37	+1	known	frame_shift_del	c.439	p.N150fs	0.001	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SAT1	HGNC	ENSG00000130066				9	0	0	5	7	58.3333
PPP2R3B	0	genome.wustl.edu	37	X	302052	302052	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	302052	302052	T	-	DEL	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	frame_shift_del	c.1165	p.T389fs	1.000	pfscan_EF_hand_dom	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				379	1	0.263158	97	55	36.1842
FAM47C	0	genome.wustl.edu	37	X	37027077	37027077	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	37027077	37027077	C	-	DEL	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	frame_shift_del	c.594	p.P200fs	0.031	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				107	0	0	35	23	39.6552
PRRG1	0	genome.wustl.edu	37	X	37312610	37312611	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	37312610	37312611	-	C	INS	PRRG1	ENST00000378628	human	ensembl	74_37	+1	known	frame_shift_ins	c.393_394	p.P134fs	0.008:0.109	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG1	HGNC	ENSG00000130962				272	1	0.3663	93	12	11.4286
MED14	0	genome.wustl.edu	37	X	40588606	40588607	+	RNA	DEL	AA	AA	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	40588606	40588607	AA	-	DEL	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MED14	HGNC	ENSG00000180182				73	0	0	20	10	33.3333
GSPT2	0	genome.wustl.edu	37	X	51487453	51487453	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	51487453	51487453	A	-	DEL	GSPT2	ENST00000340438	human	ensembl	74_37	+1	known	frame_shift_del	c.731	p.N246fs	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom	-	no_errors	GSPT2	HGNC	ENSG00000189369				133	0	0	53	25	32.0513
FGD1	0	genome.wustl.edu	37	X	54472572	54472572	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	54472572	54472572	G	-	DEL	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	frame_shift_del	c.2856	p.E953fs	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302				47	0	0	14	6	30
MTMR8	0	genome.wustl.edu	37	X	63551494	63551494	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	63551494	63551494	A	-	DEL	MTMR8	ENST00000374852	human	ensembl	74_37	-1	known	frame_shift_del	c.1295	p.F432fs	0.926	smart_Tyr_Pase_cat	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat	-	no_errors	MTMR8	HGNC	ENSG00000102043				52	0	0	21	13	38.2353
FOXO4	0	genome.wustl.edu	37	X	70316610	70316610	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	70316610	70316610	G	-	DEL	FOXO4	ENST00000374259	human	ensembl	74_37	+1	known	frame_shift_del	c.232	p.G79fs	0.984	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481				25	0	0	4	4	50
CXCR3	0	genome.wustl.edu	37	X	70836494	70836495	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	70836494	70836495	-	T	INS	CXCR3	ENST00000373691	human	ensembl	74_37	-1	known	frame_shift_ins	c.969_968	p.V324fs	0.999:0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR3,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810				108	0	0	28	9	24.3243
MAP2K4P1	0	genome.wustl.edu	37	X	72744763	72744763	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	72744763	72744763	T	-	DEL	MAP2K4P1	ENST00000602584	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	MAP2K4P1	HGNC	ENSG00000269904				46	0	0	19	11	36.6667
XIST	0	genome.wustl.edu	37	X	73046080	73046080	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	73046080	73046080	T	-	DEL	XIST	ENST00000416330	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				223	0	0	100	31	23.6641
XIST	0	genome.wustl.edu	37	X	73070114	73070114	+	RNA	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	73070114	73070114	A	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				52	0	0	18	4	18.1818
COX7B	0	genome.wustl.edu	37	X	77158412	77158412	+	RNA	DEL	T	T	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	77158412	77158412	T	-	DEL	COX7B	ENST00000475465	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	COX7B	HGNC	ENSG00000131174				8	0	0	13	4	23.5294
BRWD3	0	genome.wustl.edu	37	X	79978170	79978171	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	79978170	79978171	-	A	INS	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	frame_shift_ins	c.1767_1766	p.L589fs	1.000:1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				182	0	0	67	27	28.7234
FAM133A	0	genome.wustl.edu	37	X	92964569	92964569	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8078-01A-11D-2340-08	TCGA-BR-8078-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5bc1875d-e406-4a35-afca-899f61b71c47	297a9105-ac5a-4c40-b601-05d087b3c279	X	92964569	92964569	A	-	DEL	FAM133A	ENST00000322139	human	ensembl	74_37	+1	known	frame_shift_del	c.151	p.T53fs	0.964	NULL	NULL	-	no_errors	FAM133A	HGNC	ENSG00000179083				52	0	0	29	15	34.0909
