Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
KIF1B	0	genome.wustl.edu	37	1	10363932	10363932	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	10363932	10363932	G	T	SNP	KIF1B	ENST00000377083	human	ensembl	74_37	+1	known	nonsense	c.2689	p.E897*	0.923	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523				52	0	0	39	3	7.14286
SDF4	0	genome.wustl.edu	37	1	1153081	1153081	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	1153081	1153081	G	A	SNP	SDF4	ENST00000263741	human	ensembl	74_37	-1	known	missense	c.1016	p.P339L	0.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	SDF4	HGNC	ENSG00000078808				103	0	0	39	5	11.3636
CERS2	0	genome.wustl.edu	37	1	150940919	150940919	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	150940919	150940919	G	A	SNP	CERS2	ENST00000271688	human	ensembl	74_37	-1	known	silent	c.243	p.N81	0.999	superfamily_Homeodomain-like,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_Homeobox_dom	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS2	HGNC	ENSG00000143418				48	0	0	33	10	23.2558
IQGAP3	0	genome.wustl.edu	37	1	156524092	156524092	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	156524092	156524092	G	A	SNP	IQGAP3	ENST00000361170	human	ensembl	74_37	-1	known	silent	c.1383	p.G461	0.878	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856				63	0	0	76	7	8.43373
SPTA1	0	genome.wustl.edu	37	1	158595998	158595998	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	158595998	158595998	T	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.5848	p.S1950R	0.837	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				41	0	0	34	11	24.4444
SPTA1	0	genome.wustl.edu	37	1	158606546	158606546	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	158606546	158606546	T	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.5195	p.K1732T	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				118	0	0	98	31	24.031
LMX1A	0	genome.wustl.edu	37	1	165182992	165182992	+	Silent	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	165182992	165182992	A	G	SNP	LMX1A	ENST00000294816	human	ensembl	74_37	-1	known	silent	c.555	p.T185	0.000	superfamily_Homeodomain-like	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1A	HGNC	ENSG00000162761				196	0	0	159	9	5.35714
ASPM	0	genome.wustl.edu	37	1	197111713	197111713	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	197111713	197111713	T	A	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.1669	p.S557C	0.000	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				65	0	0	92	9	8.91089
PTPRC	0	genome.wustl.edu	37	1	198711490	198711490	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	198711490	198711490	A	C	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	missense	c.2691	p.Q897H	1.000	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				76	0	0	80	6	6.97674
MYBPH	0	genome.wustl.edu	37	1	203144565	203144565	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	203144565	203144565	A	G	SNP	MYBPH	ENST00000255416	human	ensembl	74_37	-1	known	missense	c.230	p.L77P	0.994	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPH	HGNC	ENSG00000133055				101	0	0	98	6	5.76923
ESRRG	0	genome.wustl.edu	37	1	216692701	216692701	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	216692701	216692701	A	C	SNP	ESRRG	ENST00000408911	human	ensembl	74_37	-1	known	missense	c.925	p.L309V	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	ESRRG	HGNC	ENSG00000196482				41	0	0	36	5	12.1951
ZP4	0	genome.wustl.edu	37	1	238048098	238048098	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	238048098	238048098	G	T	SNP	ZP4	ENST00000366570	human	ensembl	74_37	-1	known	missense	c.1361	p.S454Y	0.799	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP4	HGNC	ENSG00000116996				14	0	0	19	3	13.6364
LPHN2	0	genome.wustl.edu	37	1	82421583	82421583	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	82421583	82421583	A	T	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.1844	p.N615I	1.000	pfam_DUF3497	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				76	0	0	88	10	10.2041
PKN2	0	genome.wustl.edu	37	1	89273385	89273385	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	1	89273385	89273385	A	T	SNP	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	nonsense	c.2029	p.K677*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243				78	0	0	81	6	6.89655
CPN1	0	genome.wustl.edu	37	10	101824989	101824989	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	10	101824989	101824989	G	A	SNP	CPN1	ENST00000370418	human	ensembl	74_37	-1	known	missense	c.715	p.R239C	0.684	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054				107	0	0	83	7	7.77778
CUBN	0	genome.wustl.edu	37	10	16918918	16918918	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	10	16918918	16918918	G	C	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.9084	p.F3028L	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				62	0	0	68	11	13.9241
MYO3A	0	genome.wustl.edu	37	10	26463375	26463375	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	10	26463375	26463375	T	A	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	nonsense	c.4182	p.Y1394*	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				105	0	0	116	11	8.66142
STOX1	0	genome.wustl.edu	37	10	70644504	70644504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	10	70644504	70644504	C	T	SNP	STOX1	ENST00000298596	human	ensembl	74_37	+1	known	missense	c.952	p.R318C	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730				93	0	0	115	7	5.7377
SORBS1	0	genome.wustl.edu	37	10	97141493	97141493	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	10	97141493	97141493	G	A	SNP	SORBS1	ENST00000607232	human	ensembl	74_37	-1	known	silent	c.969	p.S323	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637				88	0	0	71	13	15.4762
PGR	0	genome.wustl.edu	37	11	100999184	100999184	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	100999184	100999184	G	A	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	silent	c.618	p.S206	0.373	pfam_Progest_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				32	0	0	18	6	25
DSCAML1	0	genome.wustl.edu	37	11	117310022	117310022	+	Silent	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	117310022	117310022	A	G	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	silent	c.4284	p.T1428	0.131	pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				79	0	0	58	5	7.93651
OR10G7	0	genome.wustl.edu	37	11	123908818	123908818	+	Silent	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	123908818	123908818	A	C	SNP	OR10G7	ENST00000330487	human	ensembl	74_37	-1	known	silent	c.891	p.A297	0.975	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G7	HGNC	ENSG00000182634				49	0	0	36	9	20
BTBD10	0	genome.wustl.edu	37	11	13441177	13441177	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	13441177	13441177	A	C	SNP	BTBD10	ENST00000278174	human	ensembl	74_37	-1	known	missense	c.414	p.S138R	1.000	NULL	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	BTBD10	HGNC	ENSG00000148925				197	0	0	209	17	7.52212
TRAF6	0	genome.wustl.edu	37	11	36512115	36512115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	36512115	36512115	C	T	SNP	TRAF6	ENST00000348124	human	ensembl	74_37	-1	known	missense	c.842	p.S281N	0.044	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF6	HGNC	ENSG00000175104				111	0	0	106	14	11.6667
HSD17B12	0	genome.wustl.edu	37	11	43876699	43876699	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	43876699	43876699	G	A	SNP	HSD17B12	ENST00000278353	human	ensembl	74_37	+1	known	silent	c.840	p.S280	0.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B12	HGNC	ENSG00000149084				54	0	0	81	11	11.9565
OR51D1	0	genome.wustl.edu	37	11	4661157	4661157	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	4661157	4661157	T	G	SNP	OR51D1	ENST00000357605	human	ensembl	74_37	+1	known	missense	c.137	p.F46C	0.043	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51D1	HGNC	ENSG00000197428				63	0	0	76	6	7.31707
OR4P4	0	genome.wustl.edu	37	11	55405859	55405859	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	55405859	55405859	T	C	SNP	OR4P4	ENST00000314612	human	ensembl	74_37	+1	known	missense	c.26	p.L9S	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4P4	HGNC	ENSG00000181927				120	0	0	114	12	9.52381
OR8U1	0	genome.wustl.edu	37	11	56143498	56143498	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	56143498	56143498	G	T	SNP	OR8U1	ENST00000302270	human	ensembl	74_37	+1	known	missense	c.399	p.M133I	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8U1	HGNC	ENSG00000172199				123	1	0.806452	114	7	5.78512
TRIM6-TRIM34	0	genome.wustl.edu	37	11	5624861	5624861	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	5624861	5624861	T	C	SNP	TRIM6-TRIM34	ENST00000354852	human	ensembl	74_37	+1	known	missense	c.403	p.F135L	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM6-TRIM34	HGNC	ENSG00000258588				96	0	0	52	5	8.77193
OR52N1	0	genome.wustl.edu	37	11	5809592	5809592	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	5809592	5809592	A	G	SNP	OR52N1	ENST00000317078	human	ensembl	74_37	-1	known	missense	c.455	p.L152P	0.011	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR52N1	HGNC	ENSG00000181001				67	0	0	48	4	7.69231
PCNXL3	0	genome.wustl.edu	37	11	65387008	65387008	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	65387008	65387008	C	T	SNP	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	missense	c.1706	p.A569V	0.798	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				29	0	0	15	5	25
OR2AG2	0	genome.wustl.edu	37	11	6789842	6789842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	6789842	6789842	G	A	SNP	OR2AG2	ENST00000338569	human	ensembl	74_37	-1	known	missense	c.347	p.A116V	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AG2	HGNC	ENSG00000188124				65	0	0	43	8	15.6863
SYT9	0	genome.wustl.edu	37	11	7439317	7439317	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	7439317	7439317	T	C	SNP	SYT9	ENST00000318881	human	ensembl	74_37	+1	known	missense	c.1295	p.I432T	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743				79	0	0	60	8	11.7647
LRRC32	0	genome.wustl.edu	37	11	76371306	76371306	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	76371306	76371306	G	C	SNP	LRRC32	ENST00000260061	human	ensembl	74_37	-1	known	missense	c.1331	p.S444C	0.984	smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507				18	0	0	25	4	13.7931
CCDC89	0	genome.wustl.edu	37	11	85396349	85396349	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	11	85396349	85396349	C	A	SNP	CCDC89	ENST00000316398	human	ensembl	74_37	-1	known	missense	c.825	p.L275F	1.000	NULL	NULL	-	no_errors	CCDC89	HGNC	ENSG00000179071				92	0	0	92	6	6.12245
TAS2R43	0	genome.wustl.edu	37	12	11244194	11244194	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	12	11244194	11244194	T	C	SNP	TAS2R43	ENST00000531678	human	ensembl	74_37	-1	known	missense	c.635	p.H212R	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374				15	0	0	22	4	15.3846
OAS1	0	genome.wustl.edu	37	12	113346553	113346553	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	12	113346553	113346553	G	A	SNP	OAS1	ENST00000445409	human	ensembl	74_37	+1	known	silent	c.393	p.A131	0.657	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS1	HGNC	ENSG00000089127				80	0	0	56	11	16.4179
TMEM132D	0	genome.wustl.edu	37	12	130184611	130184611	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	12	130184611	130184611	C	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.712	p.D238Y	0.979	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				67	0	0	55	5	8.33333
SP1	0	genome.wustl.edu	37	12	53777235	53777235	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	12	53777235	53777235	C	G	SNP	SP1	ENST00000327443	human	ensembl	74_37	+1	known	missense	c.1504	p.L502V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591				97	0	0	83	6	6.74157
CAND1	0	genome.wustl.edu	37	12	67700348	67700348	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	12	67700348	67700348	T	G	SNP	CAND1	ENST00000545606	human	ensembl	74_37	+1	known	missense	c.2900	p.L967R	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530				56	0	0	49	9	15.5172
CD163	0	genome.wustl.edu	37	12	7639263	7639263	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	12	7639263	7639263	C	A	SNP	CD163	ENST00000359156	human	ensembl	74_37	-1	known	nonsense	c.2290	p.E764*	0.110	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	CD163	HGNC	ENSG00000177575				205	0	0	143	22	13.3333
OTOGL	0	genome.wustl.edu	37	12	80733021	80733021	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	12	80733021	80733021	C	G	SNP	OTOGL	ENST00000458043	human	ensembl	74_37	+1	known	nonsense	c.5000	p.S1667*	0.371	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899				211	0	0	165	19	10.3261
MYF6	0	genome.wustl.edu	37	12	81101535	81101535	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	12	81101535	81101535	T	G	SNP	MYF6	ENST00000228641	human	ensembl	74_37	+1	known	missense	c.37	p.F13V	1.000	pfam_Basic,smart_Basic	pfam_Basic,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYF6	HGNC	ENSG00000111046				80	0	0	61	8	11.5942
A2ML1	0	genome.wustl.edu	37	12	9004550	9004550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	12	9004550	9004550	G	A	SNP	A2ML1	ENST00000299698	human	ensembl	74_37	+1	known	missense	c.2405	p.R802H	1.000	pfam_Macroglobln_a2,pfam_SV_autoAg	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535				153	0	0	114	11	8.8
NALCN	0	genome.wustl.edu	37	13	101717784	101717784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	13	101717784	101717784	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.4576	p.G1526S	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				117	0	0	60	26	30.2326
NALCN	0	genome.wustl.edu	37	13	101747941	101747941	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	13	101747941	101747941	A	G	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.3253	p.W1085R	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				33	0	0	47	19	28.7879
GAS6	0	genome.wustl.edu	37	13	114535746	114535746	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	13	114535746	114535746	G	A	SNP	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	missense	c.943	p.R315C	0.000	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				73	0	0	40	3	6.97674
SPERT	0	genome.wustl.edu	37	13	46287451	46287451	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	13	46287451	46287451	C	T	SNP	SPERT	ENST00000310521	human	ensembl	74_37	+1	known	silent	c.291	p.S97	0.002	NULL	NULL	-	no_errors	SPERT	HGNC	ENSG00000174015				114	0	0	73	4	5.19481
POU4F1	0	genome.wustl.edu	37	13	79175862	79175862	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	13	79175862	79175862	C	T	SNP	POU4F1	ENST00000377208	human	ensembl	74_37	-1	known	silent	c.948	p.T316	0.997	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F1	HGNC	ENSG00000152192				34	0	0	16	3	15.7895
ECRP	0	genome.wustl.edu	37	14	21388364	21388364	+	RNA	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	14	21388364	21388364	G	A	SNP	ECRP	ENST00000555624	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-84C10.2	Clone_based_vega_gene	ENSG00000136315				68	0	0	54	7	11.4754
SOS2	0	genome.wustl.edu	37	14	50666574	50666574	+	Splice_Site	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	14	50666574	50666574	C	T	SNP	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	splice_site	c.346-1	e4-1	1.000	-	-	-	no_errors	SOS2	HGNC	ENSG00000100485				70	0	0	65	18	21.6867
ACOT4	0	genome.wustl.edu	37	14	74060458	74060458	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	14	74060458	74060458	C	T	SNP	ACOT4	ENST00000326303	human	ensembl	74_37	+1	known	silent	c.510	p.L170	0.157	pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT4	HGNC	ENSG00000177465				64	0	0	47	31	39.7436
FLRT2	0	genome.wustl.edu	37	14	86089626	86089626	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	14	86089626	86089626	G	A	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.1768	p.E590K	1.000	NULL	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				148	0	0	109	21	16.1538
UNC79	0	genome.wustl.edu	37	14	94088470	94088470	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	14	94088470	94088470	T	G	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.4957	p.S1653A	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				92	0	0	73	17	18.8889
SERPINA5	0	genome.wustl.edu	37	14	95058443	95058443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	14	95058443	95058443	C	T	SNP	SERPINA5	ENST00000329597	human	ensembl	74_37	+1	known	missense	c.1088	p.A363V	0.376	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488				324	0	0	223	12	5.10638
MKRN3	0	genome.wustl.edu	37	15	23811873	23811873	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	15	23811873	23811873	T	C	SNP	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	missense	c.944	p.M315T	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455				44	0	0	36	16	30.7692
BAHD1	0	genome.wustl.edu	37	15	40754422	40754422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	15	40754422	40754422	C	T	SNP	BAHD1	ENST00000416165	human	ensembl	74_37	+1	known	missense	c.1744	p.R582C	0.170	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHD1	HGNC	ENSG00000140320				153	0	0	98	9	8.41121
PKM	0	genome.wustl.edu	37	15	72511293	72511293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	15	72511293	72511293	C	T	SNP	PKM	ENST00000319622	human	ensembl	74_37	-1	known	missense	c.146	p.C49Y	1.000	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKM	HGNC	ENSG00000067225				26	0	0	19	3	13.6364
BBS4	0	genome.wustl.edu	37	15	73023934	73023934	+	Silent	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	15	73023934	73023934	C	G	SNP	BBS4	ENST00000395205	human	ensembl	74_37	+1	known	silent	c.927	p.P309	0.443	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	BBS4	HGNC	ENSG00000140463				98	0	0	90	27	23.0769
ACAN	0	genome.wustl.edu	37	15	89398570	89398570	+	Silent	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	15	89398570	89398570	A	G	SNP	ACAN	ENST00000439576	human	ensembl	74_37	+1	known	silent	c.2754	p.L918	0.003	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766				45	0	0	32	3	8.57143
HAPLN3	0	genome.wustl.edu	37	15	89421211	89421211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	15	89421211	89421211	C	T	SNP	HAPLN3	ENST00000359595	human	ensembl	74_37	-1	known	missense	c.1073	p.R358H	0.145	superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN3	HGNC	ENSG00000140511				43	0	0	21	6	22.2222
NOMO1	0	genome.wustl.edu	37	16	14946401	14946401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	16	14946401	14946401	G	A	SNP	NOMO1	ENST00000287667	human	ensembl	74_37	+1	known	missense	c.697	p.V233M	1.000	superfamily_CarboxyPept-like_regulatory	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512				20	0	0	17	6	26.087
TRAF7	0	genome.wustl.edu	37	16	2223996	2223996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	16	2223996	2223996	G	A	SNP	TRAF7	ENST00000326181	human	ensembl	74_37	+1	known	missense	c.1210	p.V404I	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653				160	0	0	103	24	18.8976
SULT1A2	0	genome.wustl.edu	37	16	28606764	28606764	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	16	28606764	28606764	G	T	SNP	SULT1A2	ENST00000335715	human	ensembl	74_37	-1	known	missense	c.296	p.T99K	0.014	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A2	HGNC	ENSG00000197165				82	0	0	73	14	16.092
KIF22	0	genome.wustl.edu	37	16	29810471	29810471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	16	29810471	29810471	G	A	SNP	KIF22	ENST00000160827	human	ensembl	74_37	+1	known	missense	c.725	p.R242H	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_DNA-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616				30	0	0	26	19	42.2222
ENSG00000259966	0	genome.wustl.edu	37	16	32616275	32616275	+	RNA	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	16	32616275	32616275	C	G	SNP	ENSG00000259966	ENST00000562976	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-652G5.1	Clone_based_vega_gene	ENSG00000259966				24	0	0	39	3	7.14286
SALL1	0	genome.wustl.edu	37	16	51173596	51173596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	16	51173596	51173596	G	A	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.2537	p.A846V	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				121	0	0	105	25	19.2308
IRX6	0	genome.wustl.edu	37	16	55363013	55363013	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	16	55363013	55363013	A	C	SNP	IRX6	ENST00000290552	human	ensembl	74_37	+1	known	missense	c.1123	p.S375R	0.968	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX6	HGNC	ENSG00000159387				70	0	0	61	6	8.95522
KARS	0	genome.wustl.edu	37	16	75665710	75665710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	16	75665710	75665710	C	T	SNP	KARS	ENST00000319410	human	ensembl	74_37	-1	known	missense	c.1043	p.R348H	1.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Lys-tRNA-ligase_II	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Lys-tRNA-synth_II_C,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Lys-tRNA-ligase_II	-	no_errors	KARS	HGNC	ENSG00000065427				182	0	0	118	8	6.34921
CNTNAP4	0	genome.wustl.edu	37	16	76569647	76569647	+	Silent	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	16	76569647	76569647	T	G	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	silent	c.2958	p.T986	0.034	superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				30	0	0	19	4	17.3913
MYH1	0	genome.wustl.edu	37	17	10399568	10399568	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	17	10399568	10399568	G	C	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.4955	p.A1652G	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				114	0	0	107	7	6.14035
SMG6	0	genome.wustl.edu	37	17	2202841	2202841	+	Silent	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	17	2202841	2202841	C	A	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	silent	c.1206	p.R402	0.996	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				61	0	0	73	7	8.75
SSH2	0	genome.wustl.edu	37	17	27999110	27999110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	17	27999110	27999110	C	T	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	missense	c.571	p.A191T	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				58	0	0	52	5	8.77193
THRA	0	genome.wustl.edu	37	17	38244651	38244651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	17	38244651	38244651	G	A	SNP	THRA	ENST00000264637	human	ensembl	74_37	+1	known	missense	c.880	p.V294I	0.951	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351				109	0	0	98	7	6.66667
C17orf104	0	genome.wustl.edu	37	17	42744530	42744530	+	Silent	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	17	42744530	42744530	C	A	SNP	C17orf104	ENST00000409122	human	ensembl	74_37	+1	known	silent	c.1251	p.G417	1.000	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336				89	0	0	85	6	6.59341
RECQL5	0	genome.wustl.edu	37	17	73627585	73627585	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	17	73627585	73627585	C	A	SNP	RECQL5	ENST00000317905	human	ensembl	74_37	-1	known	missense	c.1393	p.G465C	0.930	NULL	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469				72	0	0	62	4	6.06061
TP53	0	genome.wustl.edu	37	17	7573994	7573994	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	17	7573994	7573994	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.1033	p.N345D	0.995	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				12	0	0	14	8	36.3636
DSG3	0	genome.wustl.edu	37	18	29038417	29038417	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	18	29038417	29038417	G	A	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	missense	c.226	p.D76N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				68	0	0	64	5	7.24638
DSG3	0	genome.wustl.edu	37	18	29038422	29038422	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	18	29038422	29038422	C	A	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	nonsense	c.231	p.Y77*	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				70	0	0	64	7	9.85915
CCDC178	0	genome.wustl.edu	37	18	30847187	30847187	+	Silent	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	18	30847187	30847187	T	A	SNP	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	silent	c.1251	p.A417	0.001	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				45	0	0	73	9	10.9756
ASXL3	0	genome.wustl.edu	37	18	31324793	31324793	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	18	31324793	31324793	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.4981	p.V1661I	0.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				49	0	0	49	11	18.3333
COLEC12	0	genome.wustl.edu	37	18	321787	321787	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	18	321787	321787	G	A	SNP	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	missense	c.2084	p.P695L	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				139	0	0	130	32	19.7531
DLGAP1	0	genome.wustl.edu	37	18	3879582	3879582	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	18	3879582	3879582	C	T	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	missense	c.487	p.V163I	0.993	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579				129	0	0	99	11	10
SYT4	0	genome.wustl.edu	37	18	40851770	40851770	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	18	40851770	40851770	T	C	SNP	SYT4	ENST00000255224	human	ensembl	74_37	-1	known	missense	c.877	p.I293V	1.000	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872				95	0	0	92	5	5.15464
MBD1	0	genome.wustl.edu	37	18	47800630	47800630	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	18	47800630	47800630	C	T	SNP	MBD1	ENST00000424334	human	ensembl	74_37	-1	known	missense	c.1225	p.D409N	1.000	pfam_Znf_CXXC,pfscan_Znf_CXXC	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644				75	0	0	60	4	6.25
CDH7	0	genome.wustl.edu	37	18	63511174	63511174	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	18	63511174	63511174	G	T	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	missense	c.1108	p.D370Y	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				94	0	0	85	8	8.60215
CDH7	0	genome.wustl.edu	37	18	63547907	63547907	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	18	63547907	63547907	G	T	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	missense	c.2135	p.W712L	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				95	0	0	131	8	5.7554
LOC100289333	0	genome.wustl.edu	37	19	12318169	12318169	+	RNA	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	12318169	12318169	T	C	SNP	LOC100289333	ENST00000415793	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.566	-	-	-	no_errors	CTD-2666L21.1	Clone_based_vega_gene	ENSG00000234773				86	0	0	82	7	7.86517
MEF2B	0	genome.wustl.edu	37	19	19258640	19258640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	19258640	19258640	G	A	SNP	MEF2B	ENST00000162023	human	ensembl	74_37	-1	known	missense	c.260	p.T87M	1.000	superfamily_TF_MADSbox	pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2B	HGNC	ENSG00000213999				35	0	0	25	3	10.7143
ZNF208	0	genome.wustl.edu	37	19	22155381	22155381	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	22155381	22155381	T	A	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.2455	p.T819S	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				67	0	0	89	11	11
NPHS1	0	genome.wustl.edu	37	19	36330422	36330422	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	36330422	36330422	C	G	SNP	NPHS1	ENST00000378910	human	ensembl	74_37	-1	known	missense	c.2903	p.G968A	0.995	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NPHS1	HGNC	ENSG00000161270				97	0	0	72	14	16.2791
HKR1	0	genome.wustl.edu	37	19	37853775	37853775	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	37853775	37853775	A	G	SNP	HKR1	ENST00000324411	human	ensembl	74_37	+1	known	missense	c.1078	p.K360E	0.027	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666				107	0	0	87	17	16.3462
DAPK3	0	genome.wustl.edu	37	19	3969700	3969700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	3969700	3969700	G	A	SNP	DAPK3	ENST00000301264	human	ensembl	74_37	-1	known	missense	c.34	p.H12Y	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DAPK3	HGNC	ENSG00000167657				58	0	0	48	5	9.43396
CARD8	0	genome.wustl.edu	37	19	48733886	48733886	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	48733886	48733886	C	A	SNP	CARD8	ENST00000391898	human	ensembl	74_37	-1	known	missense	c.844	p.A282S	0.055	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD8	HGNC	ENSG00000105483				140	0	0	113	22	16.2963
PTOV1	0	genome.wustl.edu	37	19	50360274	50360274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	50360274	50360274	C	T	SNP	PTOV1	ENST00000391842	human	ensembl	74_37	+1	known	missense	c.601	p.R201C	1.000	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960				176	0	0	125	13	9.42029
ZNF534	0	genome.wustl.edu	37	19	52937331	52937331	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	52937331	52937331	C	G	SNP	ZNF534	ENST00000332323	human	ensembl	74_37	+1	known	missense	c.139	p.L47V	0.829	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633				82	0	0	67	12	15.1899
NLRP7	0	genome.wustl.edu	37	19	55449462	55449462	+	Silent	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	55449462	55449462	C	A	SNP	NLRP7	ENST00000446217	human	ensembl	74_37	-1	known	silent	c.2163	p.R721	0.764	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634				286	0	0	233	26	10.0386
USP29	0	genome.wustl.edu	37	19	57641627	57641627	+	Silent	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	57641627	57641627	A	G	SNP	USP29	ENST00000254181	human	ensembl	74_37	+1	known	silent	c.1584	p.Q528	0.997	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP29	HGNC	ENSG00000131864				144	0	0	153	19	11.0465
ZNF814	0	genome.wustl.edu	37	19	58385546	58385546	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	58385546	58385546	G	T	SNP	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	missense	c.1212	p.D404E	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				20	0	0	15	3	16.6667
ZNF135	0	genome.wustl.edu	37	19	58578607	58578607	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	58578607	58578607	G	A	SNP	ZNF135	ENST00000401053	human	ensembl	74_37	+1	known	missense	c.827	p.R276Q	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF135	HGNC	ENSG00000176293				137	1	0.724638	100	23	18.6992
A1BG	0	genome.wustl.edu	37	19	58862776	58862776	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	58862776	58862776	G	A	SNP	A1BG	ENST00000263100	human	ensembl	74_37	-1	known	silent	c.891	p.V297	0.002	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	A1BG	HGNC	ENSG00000121410				115	0	0	92	9	8.91089
DPP10	0	genome.wustl.edu	37	2	116503686	116503686	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	116503686	116503686	A	T	SNP	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	nonsense	c.889	p.K297*	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497				29	0	0	47	5	9.61538
LRP1B	0	genome.wustl.edu	37	2	140995737	140995737	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	140995737	140995737	A	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.13544	p.M4515R	0.991	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				76	0	0	90	9	9.09091
LRP1B	0	genome.wustl.edu	37	2	141093238	141093238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	141093238	141093238	A	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.12062	p.L4021P	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				73	0	0	103	8	7.20721
SCN3A	0	genome.wustl.edu	37	2	166003271	166003271	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	166003271	166003271	T	C	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	missense	c.1649	p.K550R	0.962	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				102	0	0	110	16	12.6984
HOXD10	0	genome.wustl.edu	37	2	176981726	176981726	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	176981726	176981726	G	A	SNP	HOXD10	ENST00000249501	human	ensembl	74_37	+1	known	silent	c.165	p.P55	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD10	HGNC	ENSG00000128710				74	0	0	113	8	6.61157
TTN	0	genome.wustl.edu	37	2	179424681	179424681	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	179424681	179424681	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.78474	p.K26158N	0.992	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				70	0	0	77	6	7.22892
TTN	0	genome.wustl.edu	37	2	179439187	179439187	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	179439187	179439187	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.63968	p.L21323P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				314	0	0	344	25	6.77507
TTN	0	genome.wustl.edu	37	2	179600580	179600580	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	179600580	179600580	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.10861	p.Y3621H	0.999	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				48	0	0	63	11	14.8649
ZDBF2	0	genome.wustl.edu	37	2	207172843	207172843	+	Silent	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	207172843	207172843	T	C	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	silent	c.3591	p.S1197	0.999	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				56	0	0	57	7	10.9375
ALK	0	genome.wustl.edu	37	2	29416759	29416759	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	29416759	29416759	C	T	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	silent	c.4194	p.P1398	0.001	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094				59	0	0	40	5	11.1111
SLC1A4	0	genome.wustl.edu	37	2	65217089	65217089	+	Silent	SNP	G	G	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	65217089	65217089	G	C	SNP	SLC1A4	ENST00000234256	human	ensembl	74_37	+1	known	silent	c.312	p.S104	0.992	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A4	HGNC	ENSG00000115902				9	0	0	5	4	44.4444
PCBP1	0	genome.wustl.edu	37	2	70315122	70315122	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	2	70315122	70315122	A	T	SNP	PCBP1	ENST00000303577	human	ensembl	74_37	+1	known	missense	c.247	p.I83F	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP1	HGNC	ENSG00000169564				139	0	0	115	10	8
DNMT3B	0	genome.wustl.edu	37	20	31387101	31387101	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	20	31387101	31387101	C	T	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	nonsense	c.1726	p.R576*	0.995	pfam_C5_MeTfrase	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				24	0	0	19	3	13.6364
E2F1	0	genome.wustl.edu	37	20	32268147	32268147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	20	32268147	32268147	G	A	SNP	E2F1	ENST00000343380	human	ensembl	74_37	-1	known	missense	c.337	p.R113C	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412				26	0	0	29	2	6.45161
DLGAP4	0	genome.wustl.edu	37	20	35125434	35125434	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	20	35125434	35125434	G	T	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.1975	p.A659S	0.876	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				42	0	0	41	4	8.88889
ZHX3	0	genome.wustl.edu	37	20	39830759	39830759	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	20	39830759	39830759	C	T	SNP	ZHX3	ENST00000309060	human	ensembl	74_37	-1	known	missense	c.2798	p.R933H	0.080	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ZHX3	HGNC	ENSG00000174306				86	0	0	89	14	13.5922
BCAS1	0	genome.wustl.edu	37	20	52674669	52674669	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	20	52674669	52674669	C	A	SNP	BCAS1	ENST00000371440	human	ensembl	74_37	-1	known	missense	c.97	p.V33F	0.000	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787				20	0	0	27	5	15.625
PROKR2	0	genome.wustl.edu	37	20	5294674	5294674	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	20	5294674	5294674	G	A	SNP	PROKR2	ENST00000217270	human	ensembl	74_37	-1	known	silent	c.342	p.Y114	0.886	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR2	HGNC	ENSG00000101292				69	0	0	51	7	12.069
EVA1C	0	genome.wustl.edu	37	21	33887131	33887131	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	21	33887131	33887131	G	A	SNP	EVA1C	ENST00000300255	human	ensembl	74_37	+1	known	silent	c.957	p.P319	0.015	NULL	pfam_Lectin_gal-bd_dom,pfscan_Lectin_gal-bd_dom	-	no_errors	EVA1C	HGNC	ENSG00000166979				54	0	0	44	3	6.38298
SUMO3	0	genome.wustl.edu	37	21	46233836	46233836	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	21	46233836	46233836	C	A	SNP	SUMO3	ENST00000411651	human	ensembl	74_37	-1	known	missense	c.205	p.V69F	0.000	NULL	pfam_Rad60/SUMO_like,pfscan_Ubiquitin_supergroup	-	no_errors	SUMO3	HGNC	ENSG00000184900				33	0	0	33	3	8.33333
BMS1P20	0	genome.wustl.edu	37	22	22664606	22664606	+	RNA	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	22	22664606	22664606	A	G	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				16	0	0	24	3	11.1111
MYH9	0	genome.wustl.edu	37	22	36696948	36696948	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	22	36696948	36696948	C	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.2787	p.E929D	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				109	0	0	76	10	11.6279
NAGA	0	genome.wustl.edu	37	22	42458989	42458989	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	22	42458989	42458989	G	A	SNP	NAGA	ENST00000396398	human	ensembl	74_37	-1	known	missense	c.799	p.R267W	0.223	superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	NAGA	HGNC	ENSG00000198951				44	0	0	35	4	10.2564
AMOTL2	0	genome.wustl.edu	37	3	134080535	134080535	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	3	134080535	134080535	G	A	SNP	AMOTL2	ENST00000249883	human	ensembl	74_37	-1	known	missense	c.1394	p.A465V	0.995	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL2	HGNC	ENSG00000114019				32	0	0	24	4	14.2857
ATR	0	genome.wustl.edu	37	3	142254976	142254976	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	3	142254976	142254976	T	G	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	missense	c.3793	p.K1265Q	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				50	0	0	58	4	6.45161
OXNAD1	0	genome.wustl.edu	37	3	16336421	16336421	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	3	16336421	16336421	C	A	SNP	OXNAD1	ENST00000544043	human	ensembl	74_37	+1	known	missense	c.403	p.P135T	1.000	superfamily_Riboflavin_synthase-like_b-brl	pfam_OxRdtase_FAD/NAD-bd,pfam_Fe_red_NAD-bd_6,superfamily_Riboflavin_synthase-like_b-brl,prints_Phe_hydroxylase,prints_NADH-Cyt_B5_reductase	-	no_errors	OXNAD1	HGNC	ENSG00000154814				97	0	0	88	5	5.37634
PLD1	0	genome.wustl.edu	37	3	171330103	171330103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	3	171330103	171330103	G	A	SNP	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	missense	c.2848	p.R950W	0.006	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651				68	0	0	49	5	9.25926
SCN5A	0	genome.wustl.edu	37	3	38591931	38591931	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	3	38591931	38591931	C	G	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.5932	p.D1978H	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				58	0	0	30	3	9.09091
DAG1	0	genome.wustl.edu	37	3	49568587	49568587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	3	49568587	49568587	C	T	SNP	DAG1	ENST00000308775	human	ensembl	74_37	+1	known	missense	c.643	p.R215W	0.991	superfamily_Alpha-dystroglycan_domain_2	pfam_DAG1,superfamily_Alpha-dystroglycan_domain_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	DAG1	HGNC	ENSG00000173402				57	0	0	45	5	10
LRTM1	0	genome.wustl.edu	37	3	54958847	54958847	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	3	54958847	54958847	T	C	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.403	p.S135G	0.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771				54	0	0	56	12	17.6471
FLNB	0	genome.wustl.edu	37	3	58109299	58109299	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	3	58109299	58109299	C	G	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	nonsense	c.3606	p.Y1202*	0.998	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				69	0	0	60	7	10.4478
OR5H14	0	genome.wustl.edu	37	3	97868494	97868494	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	3	97868494	97868494	A	G	SNP	OR5H14	ENST00000437310	human	ensembl	74_37	+1	known	missense	c.265	p.S89G	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H14	HGNC	ENSG00000236032				212	0	0	219	34	13.4387
NDNF	0	genome.wustl.edu	37	4	121961132	121961132	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	121961132	121961132	T	A	SNP	NDNF	ENST00000379692	human	ensembl	74_37	-1	known	missense	c.266	p.K89M	1.000	NULL	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	NDNF	HGNC	ENSG00000173376				57	0	0	41	4	8.88889
EDNRA	0	genome.wustl.edu	37	4	148407147	148407147	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	148407147	148407147	T	G	SNP	EDNRA	ENST00000324300	human	ensembl	74_37	+1	known	missense	c.314	p.I105S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Endthln_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_ETA_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn	-	no_errors	EDNRA	HGNC	ENSG00000151617				125	0	0	124	17	12.0567
DCHS2	0	genome.wustl.edu	37	4	155254538	155254538	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	155254538	155254538	T	C	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.1325	p.E442G	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				82	0	0	37	5	11.9048
GLRB	0	genome.wustl.edu	37	4	158041808	158041808	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	158041808	158041808	T	G	SNP	GLRB	ENST00000264428	human	ensembl	74_37	+1	known	missense	c.223	p.F75V	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Glycine_rcpt_B,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRB	HGNC	ENSG00000109738				67	0	0	35	4	10.2564
RAPGEF2	0	genome.wustl.edu	37	4	160251157	160251157	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	160251157	160251157	A	T	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	missense	c.814	p.I272F	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756				77	0	0	89	7	7.29167
WDR17	0	genome.wustl.edu	37	4	177052829	177052829	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	177052829	177052829	G	C	SNP	WDR17	ENST00000280190	human	ensembl	74_37	+1	known	missense	c.1110	p.L370F	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627				204	0	0	178	17	8.71795
AGA	0	genome.wustl.edu	37	4	178355641	178355641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	178355641	178355641	C	T	SNP	AGA	ENST00000264595	human	ensembl	74_37	-1	known	missense	c.701	p.R234H	1.000	pfam_Peptidase_T2	pfam_Peptidase_T2	-	no_errors	AGA	HGNC	ENSG00000038002				82	0	0	61	9	12.8571
ING2	0	genome.wustl.edu	37	4	184431507	184431507	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	184431507	184431507	T	C	SNP	ING2	ENST00000302327	human	ensembl	74_37	+1	known	missense	c.245	p.L82P	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING2	HGNC	ENSG00000168556				161	0	0	119	8	6.29921
SLIT2	0	genome.wustl.edu	37	4	20493407	20493407	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	20493407	20493407	T	G	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.799	p.S267A	0.996	NULL	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				102	0	0	81	5	5.81395
PCDH7	0	genome.wustl.edu	37	4	30724803	30724803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	30724803	30724803	G	A	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.1759	p.D587N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				43	0	0	35	7	16.6667
LOC401127	0	genome.wustl.edu	37	4	39483039	39483039	+	RNA	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	39483039	39483039	G	A	SNP	LOC401127	ENST00000513652	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-472B18.1	Clone_based_vega_gene	ENSG00000224097				50	0	0	47	8	14.5455
ABCA11P	0	genome.wustl.edu	37	4	419995	419995	+	RNA	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	419995	419995	C	G	SNP	ABCA11P	ENST00000451020	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ABCA11P	HGNC	ENSG00000251595				21	0	0	21	3	12.5
GRXCR1	0	genome.wustl.edu	37	4	42895621	42895621	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	42895621	42895621	T	C	SNP	GRXCR1	ENST00000399770	human	ensembl	74_37	+1	known	missense	c.338	p.V113A	1.000	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203				125	0	0	115	12	9.44882
TMPRSS11A	0	genome.wustl.edu	37	4	68795684	68795684	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	68795684	68795684	C	A	SNP	TMPRSS11A	ENST00000334830	human	ensembl	74_37	-1	known	missense	c.404	p.R135I	0.010	pfam_SEA_dom,pirsf_Pept_S1A_HAT/DESC1	pfam_Peptidase_S1,pfam_SEA_dom,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_HAT/DESC1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS11A	HGNC	ENSG00000187054				65	0	0	65	4	5.7971
TADA2B	0	genome.wustl.edu	37	4	7056285	7056285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	7056285	7056285	G	A	SNP	TADA2B	ENST00000310074	human	ensembl	74_37	+1	known	missense	c.767	p.R256H	1.000	pirsf_Transcriptional_adaptor_2	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_Znf_ZZ,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	TADA2B	HGNC	ENSG00000173011				59	0	0	43	4	8.51064
CXCL9	0	genome.wustl.edu	37	4	76925962	76925962	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	76925962	76925962	C	A	SNP	CXCL9	ENST00000264888	human	ensembl	74_37	-1	known	missense	c.276	p.Q92H	1.000	superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	-	no_errors	CXCL9	HGNC	ENSG00000138755				56	0	0	49	7	12.5
GAK	0	genome.wustl.edu	37	4	861053	861053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	861053	861053	C	T	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	missense	c.2563	p.G855R	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950				132	0	0	77	10	11.4943
GRID2	0	genome.wustl.edu	37	4	94137982	94137982	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	4	94137982	94137982	A	C	SNP	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	missense	c.883	p.S295R	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208				131	0	0	110	16	12.6984
SLCO4C1	0	genome.wustl.edu	37	5	101593707	101593707	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	101593707	101593707	A	C	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	missense	c.1213	p.L405V	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930				44	0	0	59	5	7.8125
CTNND2	0	genome.wustl.edu	37	5	11022936	11022936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	11022936	11022936	G	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.2944	p.R982W	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				71	0	0	50	9	15.2542
CAMK4	0	genome.wustl.edu	37	5	110712565	110712565	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	110712565	110712565	T	G	SNP	CAMK4	ENST00000282356	human	ensembl	74_37	+1	known	missense	c.311	p.L104R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495				90	0	0	83	14	14.433
CEP120	0	genome.wustl.edu	37	5	122751739	122751739	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	122751739	122751739	C	A	SNP	CEP120	ENST00000306467	human	ensembl	74_37	-1	known	missense	c.286	p.V96F	1.000	pfam_DUF3668,superfamily_C2_dom	pfam_DUF3668,superfamily_C2_dom	-	no_errors	CEP120	HGNC	ENSG00000168944				25	0	0	28	2	6.66667
MATR3	0	genome.wustl.edu	37	5	138658622	138658622	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	138658622	138658622	G	A	SNP	MATR3	ENST00000361059	human	ensembl	74_37	+1	known	missense	c.2114	p.S705N	0.140	NULL	smart_Znf_U1,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	MATR3	HGNC	ENSG00000015479				39	0	0	51	6	10.5263
PSD2	0	genome.wustl.edu	37	5	139189337	139189337	+	Silent	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	139189337	139189337	G	T	SNP	PSD2	ENST00000274710	human	ensembl	74_37	+1	known	silent	c.312	p.L104	0.838	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD2	HGNC	ENSG00000146005				117	0	0	82	9	9.89011
PCDHA13	0	genome.wustl.edu	37	5	140263637	140263637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	140263637	140263637	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	missense	c.1784	p.R595H	0.203	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				133	0	0	97	14	12.6126
PCDHB3	0	genome.wustl.edu	37	5	140480968	140480968	+	Silent	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	140480968	140480968	G	T	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	silent	c.735	p.P245	0.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				72	0	0	77	8	9.41176
PCDHB16	0	genome.wustl.edu	37	5	140563160	140563160	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	140563160	140563160	C	A	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.1026	p.D342E	0.904	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				82	0	0	70	4	5.40541
PCDHB11	0	genome.wustl.edu	37	5	140579789	140579789	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	140579789	140579789	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.442	p.V148I	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				163	0	0	132	20	13.1579
JAKMIP2	0	genome.wustl.edu	37	5	147016608	147016608	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	147016608	147016608	G	T	SNP	JAKMIP2	ENST00000265272	human	ensembl	74_37	-1	known	missense	c.1534	p.Q512K	1.000	NULL	NULL	-	no_errors	JAKMIP2	HGNC	ENSG00000176049				126	0	0	106	10	8.62069
PLEKHG4B	0	genome.wustl.edu	37	5	156286	156286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	156286	156286	C	T	SNP	PLEKHG4B	ENST00000283426	human	ensembl	74_37	+1	known	missense	c.1241	p.A414V	0.990	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404				53	0	0	37	7	15.9091
RANBP17	0	genome.wustl.edu	37	5	170722912	170722912	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	170722912	170722912	A	C	SNP	RANBP17	ENST00000523189	human	ensembl	74_37	+1	known	missense	c.3064	p.S1022R	0.382	NULL	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	RANBP17	HGNC	ENSG00000204764				80	0	0	61	5	7.57576
UGT3A1	0	genome.wustl.edu	37	5	35965825	35965825	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	35965825	35965825	G	T	SNP	UGT3A1	ENST00000274278	human	ensembl	74_37	-1	known	missense	c.506	p.T169K	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A1	HGNC	ENSG00000145626				81	0	0	66	5	7.04225
ADCY2	0	genome.wustl.edu	37	5	7789859	7789859	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	7789859	7789859	C	T	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.2574	p.N858	1.000	smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				45	0	0	43	9	17.3077
ADCY2	0	genome.wustl.edu	37	5	7820795	7820795	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	7820795	7820795	A	G	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	missense	c.3116	p.K1039R	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				46	0	0	49	7	12.5
JMY	0	genome.wustl.edu	37	5	78533384	78533384	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	78533384	78533384	T	A	SNP	JMY	ENST00000396137	human	ensembl	74_37	+1	known	missense	c.911	p.I304N	1.000	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409				84	0	0	95	7	6.86275
VCAN	0	genome.wustl.edu	37	5	82836238	82836238	+	Silent	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	82836238	82836238	A	G	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	silent	c.7416	p.P2472	0.013	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				89	0	0	73	8	9.87654
HAPLN1	0	genome.wustl.edu	37	5	82937440	82937440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	5	82937440	82937440	C	T	SNP	HAPLN1	ENST00000274341	human	ensembl	74_37	-1	known	missense	c.940	p.V314I	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN1	HGNC	ENSG00000145681				141	0	0	131	8	5.7554
BEND3	0	genome.wustl.edu	37	6	107390253	107390253	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	6	107390253	107390253	C	T	SNP	BEND3	ENST00000369042	human	ensembl	74_37	-1	known	silent	c.2142	p.P714	0.978	NULL	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409				115	0	0	62	5	7.46269
LAMA2	0	genome.wustl.edu	37	6	129823886	129823886	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	6	129823886	129823886	T	C	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.8327	p.I2776T	0.998	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				31	0	0	40	3	6.97674
ULBP1	0	genome.wustl.edu	37	6	150290418	150290418	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	6	150290418	150290418	C	G	SNP	ULBP1	ENST00000229708	human	ensembl	74_37	+1	known	missense	c.547	p.Q183E	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP1	HGNC	ENSG00000111981				111	0	0	93	6	6.06061
PLG	0	genome.wustl.edu	37	6	161143543	161143543	+	Silent	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	6	161143543	161143543	T	C	SNP	PLG	ENST00000308192	human	ensembl	74_37	+1	known	silent	c.1200	p.S400	0.995	pirsf_Pept_S1A_plasmin,pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	PLG	HGNC	ENSG00000122194				118	0	0	98	16	14.0351
BTN1A1	0	genome.wustl.edu	37	6	26508948	26508948	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	6	26508948	26508948	G	T	SNP	BTN1A1	ENST00000244513	human	ensembl	74_37	+1	known	missense	c.1127	p.R376M	0.879	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557				158	0	0	117	13	10
HLA-G	0	genome.wustl.edu	37	6	29795657	29795657	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	6	29795657	29795657	G	A	SNP	HLA-G	ENST00000376828	human	ensembl	74_37	+1	known	silent	c.51	p.L17	0.015	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-G	HGNC	ENSG00000204632				52	0	0	29	2	6.45161
RARS2	0	genome.wustl.edu	37	6	88224725	88224725	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	6	88224725	88224725	C	T	SNP	RARS2	ENST00000369536	human	ensembl	74_37	-1	known	missense	c.1600	p.V534M	0.963	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd,tigrfam_Arg-tRNA-ligase_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-ligase_Ia	-	no_errors	RARS2	HGNC	ENSG00000146282				68	0	0	59	6	9.23077
ACHE	0	genome.wustl.edu	37	7	100491202	100491202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	7	100491202	100491202	C	T	SNP	ACHE	ENST00000302913	human	ensembl	74_37	-1	known	missense	c.652	p.V218M	0.606	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085				77	0	0	61	12	16.4384
NAPEPLD	0	genome.wustl.edu	37	7	102760123	102760123	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	7	102760123	102760123	A	G	SNP	NAPEPLD	ENST00000455523	human	ensembl	74_37	-1	known	missense	c.1061	p.F354S	1.000	NULL	NULL	-	no_errors	NAPEPLD	HGNC	ENSG00000161048				96	0	0	65	6	8.4507
AGK	0	genome.wustl.edu	37	7	141336807	141336807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	7	141336807	141336807	G	A	SNP	AGK	ENST00000355413	human	ensembl	74_37	+1	known	missense	c.716	p.S239N	1.000	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	AGK	HGNC	ENSG00000006530				29	0	0	22	6	21.4286
FOXK1	0	genome.wustl.edu	37	7	4800738	4800738	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	7	4800738	4800738	G	A	SNP	FOXK1	ENST00000328914	human	ensembl	74_37	+1	known	silent	c.1740	p.A580	0.004	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK1	HGNC	ENSG00000164916				125	0	0	84	9	9.67742
ZPBP	0	genome.wustl.edu	37	7	50057879	50057879	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	7	50057879	50057879	C	A	SNP	ZPBP	ENST00000046087	human	ensembl	74_37	-1	known	missense	c.740	p.R247L	0.998	pfam_Sp38-bd	pfam_Sp38-bd,pfscan_Ig-like_dom	-	no_errors	ZPBP	HGNC	ENSG00000042813				48	0	0	49	6	10.9091
RNF216	0	genome.wustl.edu	37	7	5780920	5780920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	7	5780920	5780920	C	T	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	missense	c.728	p.R243H	0.000	NULL	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275				96	0	0	105	6	5.40541
EIF2AK1	0	genome.wustl.edu	37	7	6082613	6082613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	7	6082613	6082613	C	T	SNP	EIF2AK1	ENST00000199389	human	ensembl	74_37	-1	known	missense	c.742	p.A248T	0.002	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232				32	0	0	34	5	12.8205
VKORC1L1	0	genome.wustl.edu	37	7	65419336	65419336	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	7	65419336	65419336	T	G	SNP	VKORC1L1	ENST00000434382	human	ensembl	74_37	+1	novel	missense	c.470	p.F157C	1.000	NULL	pfam_VKOR	-	no_errors	VKORC1L1	HGNC	ENSG00000196715				13	0	0	15	4	21.0526
ZNF12	0	genome.wustl.edu	37	7	6731622	6731622	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	7	6731622	6731622	T	G	SNP	ZNF12	ENST00000405858	human	ensembl	74_37	-1	known	missense	c.951	p.R317S	0.168	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631				67	0	0	57	9	13.6364
NPTX2	0	genome.wustl.edu	37	7	98257796	98257796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	7	98257796	98257796	G	A	SNP	NPTX2	ENST00000265634	human	ensembl	74_37	+1	known	missense	c.1151	p.R384H	0.003	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX2	HGNC	ENSG00000106236				15	0	0	13	3	18.75
RGS22	0	genome.wustl.edu	37	8	100999827	100999827	+	Silent	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	100999827	100999827	G	T	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	silent	c.3039	p.I1013	1.000	superfamily_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				34	0	0	43	4	8.51064
DCAF13	0	genome.wustl.edu	37	8	104427572	104427572	+	Silent	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	104427572	104427572	T	C	SNP	DCAF13	ENST00000297579	human	ensembl	74_37	+1	known	silent	c.354	p.T118	0.984	NULL	pfam_Sof1,pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				77	0	0	52	15	22.3881
DPYS	0	genome.wustl.edu	37	8	105393408	105393408	+	RNA	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	105393408	105393408	T	A	SNP	DPYS	ENST00000521372	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.965	-	-	-	no_errors	DPYS	HGNC	ENSG00000147647				46	0	0	45	7	13.4615
CSMD3	0	genome.wustl.edu	37	8	113421186	113421186	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	113421186	113421186	T	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.5471	p.Q1824R	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				145	0	0	146	10	6.41026
CSMD3	0	genome.wustl.edu	37	8	113599416	113599416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	113599416	113599416	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.3764	p.P1255L	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				83	0	0	128	7	5.18519
NOV	0	genome.wustl.edu	37	8	120429131	120429131	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	120429131	120429131	C	T	SNP	NOV	ENST00000259526	human	ensembl	74_37	+1	known	silent	c.232	p.L78	0.000	pfam_IGFBP-like,smart_IGFBP-like,pirsf_IGFBP_CNN	pfam_IGFBP-like,pfam_Cys_knot,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	NOV	HGNC	ENSG00000136999				31	0	0	29	3	9.375
CSMD1	0	genome.wustl.edu	37	8	2832041	2832041	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	2832041	2832041	A	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.8675	p.L2892H	0.978	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				21	0	0	15	4	21.0526
CPA6	0	genome.wustl.edu	37	8	68419089	68419089	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	68419089	68419089	C	G	SNP	CPA6	ENST00000297770	human	ensembl	74_37	-1	known	missense	c.569	p.W190S	1.000	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA6	HGNC	ENSG00000165078				51	0	0	59	13	18.0556
PREX2	0	genome.wustl.edu	37	8	68995528	68995528	+	Silent	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	68995528	68995528	T	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	silent	c.1932	p.V644	1.000	superfamily_PDZ,smart_PDZ	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				48	0	0	81	6	6.89655
C8orf34	0	genome.wustl.edu	37	8	69445301	69445301	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	69445301	69445301	A	G	SNP	C8orf34	ENST00000518698	human	ensembl	74_37	+1	known	missense	c.1022	p.D341G	1.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084				97	0	0	116	8	6.45161
CRISPLD1	0	genome.wustl.edu	37	8	75937820	75937820	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	75937820	75937820	T	A	SNP	CRISPLD1	ENST00000262207	human	ensembl	74_37	+1	known	missense	c.1284	p.H428Q	0.991	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD1	HGNC	ENSG00000121005				41	0	0	73	5	6.41026
IL7	0	genome.wustl.edu	37	8	79650848	79650848	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	8	79650848	79650848	G	T	SNP	IL7	ENST00000263851	human	ensembl	74_37	-1	known	missense	c.251	p.A84D	1.000	pfam_IL-7/IL-9_fam,smart_IL-7,pirsf_IL-7,prints_IL-7	pfam_IL-7/IL-9_fam,smart_IL-7,pirsf_IL-7,prints_IL-7	-	no_errors	IL7	HGNC	ENSG00000104432				50	0	0	66	6	8.33333
OR13F1	0	genome.wustl.edu	37	9	107267259	107267259	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	9	107267259	107267259	C	A	SNP	OR13F1	ENST00000334726	human	ensembl	74_37	+1	known	nonsense	c.716	p.S239*	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13F1	HGNC	ENSG00000186881				136	0	0	112	13	10.4
DBH	0	genome.wustl.edu	37	9	136507403	136507403	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	9	136507403	136507403	C	T	SNP	DBH	ENST00000393056	human	ensembl	74_37	+1	known	silent	c.561	p.G187	0.010	smart_DOMON_domain	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454				48	0	0	32	5	13.5135
PPP1R26	0	genome.wustl.edu	37	9	138378506	138378506	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	9	138378506	138378506	C	T	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	missense	c.2150	p.A717V	0.000	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				15	0	0	20	3	13.0435
ABCA2	0	genome.wustl.edu	37	9	139911417	139911417	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	9	139911417	139911417	C	T	SNP	ABCA2	ENST00000265662	human	ensembl	74_37	-1	known	missense	c.2713	p.V905M	0.007	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331				64	0	0	66	6	8.33333
FRMPD1	0	genome.wustl.edu	37	9	37746329	37746329	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	9	37746329	37746329	G	T	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	missense	c.4300	p.D1434Y	0.697	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				20	0	0	27	4	12.9032
TCEAL6	0	genome.wustl.edu	37	X	101395818	101395818	+	Silent	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	101395818	101395818	A	G	SNP	TCEAL6	ENST00000372773	human	ensembl	74_37	-1	known	silent	c.486	p.F162	0.003	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL6	HGNC	ENSG00000204071				94	0	0	68	9	11.6883
RAB40A	0	genome.wustl.edu	37	X	102755054	102755054	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	102755054	102755054	T	C	SNP	RAB40A	ENST00000304236	human	ensembl	74_37	-1	known	missense	c.631	p.K211E	1.000	pfam_SOCS_C,smart_Ran_GTPase,smart_SOCS_C,pfscan_SOCS_C	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,prints_Small_GTPase,pfscan_SOCS_C,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40A	HGNC	ENSG00000172476				133	0	0	72	16	18.1818
TRPC5	0	genome.wustl.edu	37	X	111155645	111155645	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	111155645	111155645	T	G	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.774	p.Q258H	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				186	0	0	138	12	8
RBMX	0	genome.wustl.edu	37	X	135960230	135960230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	135960230	135960230	C	T	SNP	RBMX	ENST00000320676	human	ensembl	74_37	-1	known	missense	c.232	p.A78T	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274				24	0	0	21	5	19.2308
SLITRK4	0	genome.wustl.edu	37	X	142716880	142716880	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	142716880	142716880	C	A	SNP	SLITRK4	ENST00000338017	human	ensembl	74_37	-1	known	missense	c.2045	p.S682I	0.944	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542				203	0	0	159	25	13.587
FMR1NB	0	genome.wustl.edu	37	X	147088343	147088343	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	147088343	147088343	T	G	SNP	FMR1NB	ENST00000370467	human	ensembl	74_37	+1	known	missense	c.519	p.C173W	0.003	superfamily_P_trefoil	superfamily_P_trefoil	-	no_errors	FMR1NB	HGNC	ENSG00000176988				106	0	0	97	13	11.8182
MAMLD1	0	genome.wustl.edu	37	X	149638240	149638240	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	149638240	149638240	A	T	SNP	MAMLD1	ENST00000432680	human	ensembl	74_37	+1	known	missense	c.320	p.E107V	0.730	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619				127	0	0	98	6	5.76923
CNGA2	0	genome.wustl.edu	37	X	150912264	150912264	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	150912264	150912264	A	G	SNP	CNGA2	ENST00000329903	human	ensembl	74_37	+1	known	missense	c.1289	p.K430R	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862				62	0	0	51	15	22.7273
OPN1MW2	0	genome.wustl.edu	37	X	153490663	153490663	+	Silent	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	153490663	153490663	C	G	SNP	OPN1MW2	ENST00000369929	human	ensembl	74_37	+1	known	silent	c.399	p.V133	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_red/grn,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1MW2	HGNC	ENSG00000166160				139	0	0	87	5	5.43478
MAP3K15	0	genome.wustl.edu	37	X	19410172	19410172	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	19410172	19410172	A	C	SNP	MAP3K15	ENST00000338883	human	ensembl	74_37	-1	known	missense	c.2379	p.F793L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815				34	0	0	29	3	9.375
ARSD	0	genome.wustl.edu	37	X	2826865	2826865	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	2826865	2826865	G	A	SNP	ARSD	ENST00000381154	human	ensembl	74_37	-1	known	silent	c.1317	p.S439	0.992	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSD	HGNC	ENSG00000006756				32	0	0	33	6	15.3846
ARSD	0	genome.wustl.edu	37	X	2826866	2826866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	2826866	2826866	C	T	SNP	ARSD	ENST00000381154	human	ensembl	74_37	-1	known	missense	c.1316	p.S439N	0.933	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSD	HGNC	ENSG00000006756				32	0	0	33	6	15.3846
PPP2R3B	0	genome.wustl.edu	37	X	295132	295132	+	Silent	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	295132	295132	T	C	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	silent	c.1698	p.A566	0.264	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				29	0	0	27	2	6.89655
DMD	0	genome.wustl.edu	37	X	31515045	31515045	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	31515045	31515045	T	C	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.8407	p.S2803G	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				29	0	0	17	4	19.0476
FAM47A	0	genome.wustl.edu	37	X	34149532	34149532	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	34149532	34149532	G	A	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	silent	c.864	p.D288	0.016	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				35	0	0	32	4	11.1111
CXorf67	0	genome.wustl.edu	37	X	51150192	51150192	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	51150192	51150192	A	C	SNP	CXorf67	ENST00000342995	human	ensembl	74_37	+1	known	missense	c.324	p.E108D	0.000	NULL	NULL	-	no_errors	CXorf67	HGNC	ENSG00000187690				28	0	0	13	3	18.75
ALAS2	0	genome.wustl.edu	37	X	55052271	55052271	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	X	55052271	55052271	C	T	SNP	ALAS2	ENST00000330807	human	ensembl	74_37	-1	known	missense	c.163	p.A55T	0.774	pfam_5aminolev_synth_preseq	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578				71	0	0	63	7	10
FRMD4A	0	genome.wustl.edu	37	10	13696451	13696452	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	10	13696451	13696452	-	G	INS	FRMD4A	ENST00000357447	human	ensembl	74_37	-1	known	frame_shift_ins	c.3015_3014	p.S1006fs	0.992:1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474				103	0	0	75	7	8.53659
BLM	0	genome.wustl.edu	37	15	91303325	91303326	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	15	91303325	91303326	-	T	INS	BLM	ENST00000559724	human	ensembl	74_37	+1	known	frame_shift_ins	c.1202_1203	p.F405fs	0.000:0.021	NULL	NULL	-	no_errors	BLM	HGNC	ENSG00000197299				10	0	0	15	5	25
ZIM3	0	genome.wustl.edu	37	19	57647033	57647033	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	19	57647033	57647033	T	-	DEL	ZIM3	ENST00000269834	human	ensembl	74_37	-1	known	frame_shift_del	c.672	p.K224fs	0.046	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946				153	0	0	172	12	6.52174
TRPV5	0	genome.wustl.edu	37	7	142630549	142630549	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	7	142630549	142630549	C	-	DEL	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	frame_shift_del	c.8	p.G3fs	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV5,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412				98	0	0	101	19	15.8333
