Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
KIF1B	0	genome.wustl.edu	37	1	10318557	10318557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	10318557	10318557	G	A	SNP	KIF1B	ENST00000263934	human	ensembl	74_37	+1	known	missense	c.190	p.D64N	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523				139	1	0.714286	55	11	16.6667
CLCC1	0	genome.wustl.edu	37	1	109484090	109484090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	109484090	109484090	C	T	SNP	CLCC1	ENST00000356970	human	ensembl	74_37	-1	known	missense	c.733	p.A245T	1.000	pfam_Chloride_chnl_CLIC-like	pfam_Chloride_chnl_CLIC-like	-	no_errors	CLCC1	HGNC	ENSG00000121940				153	0	0	44	9	16.9811
GSTM3	0	genome.wustl.edu	37	1	110280306	110280306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	110280306	110280306	C	T	SNP	GSTM3	ENST00000256594	human	ensembl	74_37	-1	known	missense	c.440	p.G147E	1.000	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,prints_GST_mu	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_mu	-	no_errors	GSTM3	HGNC	ENSG00000134202				320	0	0	155	24	13.4078
DENND2C	0	genome.wustl.edu	37	1	115142883	115142883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	115142883	115142883	G	A	SNP	DENND2C	ENST00000393274	human	ensembl	74_37	-1	known	missense	c.2047	p.R683W	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984				124	0	0	58	15	20.5479
PTCHD2	0	genome.wustl.edu	37	1	11579854	11579854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	11579854	11579854	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.2117	p.R706H	1.000	pfam_Patched	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				183	0	0	75	12	13.7931
IGSF3	0	genome.wustl.edu	37	1	117156549	117156549	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	117156549	117156549	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	silent	c.670	p.L224	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061				94	0	0	29	7	19.4444
FBXO44	0	genome.wustl.edu	37	1	11718602	11718602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	11718602	11718602	G	A	SNP	FBXO44	ENST00000376768	human	ensembl	74_37	+1	novel	missense	c.376	p.V126I	1.000	NULL	pfam_F-box-assoc_dom,pfam_F-box_dom,superfamily_F-box_dom,superfamily_Galactose-bd-like,smart_F-box_dom,pfscan_F-box_dom,pfscan_F-box-assoc_dom	-	no_errors	FBXO44	HGNC	ENSG00000132879				61	0	0	30	14	31.8182
CD101	0	genome.wustl.edu	37	1	117559831	117559831	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	117559831	117559831	A	G	SNP	CD101	ENST00000256652	human	ensembl	74_37	+1	known	missense	c.1348	p.I450V	0.000	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD101	HGNC	ENSG00000134256				92	0	0	40	7	14.8936
MTHFR	0	genome.wustl.edu	37	1	11861411	11861411	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	11861411	11861411	G	T	SNP	MTHFR	ENST00000376583	human	ensembl	74_37	-1	known	silent	c.405	p.T135	1.000	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000				113	0	0	52	3	5.45455
HIST2H2BA	0	genome.wustl.edu	37	1	120906302	120906302	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	120906302	120906302	G	A	SNP	HIST2H2BA	ENST00000430394	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HIST2H2BA	HGNC	ENSG00000223345				180	0	0	59	11	15.7143
VPS13D	0	genome.wustl.edu	37	1	12405567	12405567	+	Splice_Site	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	12405567	12405567	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	splice_site	c.9021+1	e42+1	1.000	-	-	-	no_errors	VPS13D	HGNC	ENSG00000048707				193	0	0	58	20	25.641
MXRA8	0	genome.wustl.edu	37	1	1289837	1289837	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	1289837	1289837	G	A	SNP	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	silent	c.1002	p.S334	1.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				98	0	0	45	6	11.7647
CCNL2	0	genome.wustl.edu	37	1	1328774	1328774	+	Splice_Site	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	1328774	1328774	A	G	SNP	CCNL2	ENST00000400809	human	ensembl	74_37	-1	known	splice_site	c.659+2	e5+2	1.000	-	-	-	no_errors	CCNL2	HGNC	ENSG00000221978				156	0	0	82	13	13.6842
PRDM2	0	genome.wustl.edu	37	1	14105136	14105136	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	14105136	14105136	A	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.846	p.E282D	0.965	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				82	0	0	38	7	15.5556
CA14	0	genome.wustl.edu	37	1	150234016	150234016	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	150234016	150234016	C	T	SNP	CA14	ENST00000369111	human	ensembl	74_37	+1	known	silent	c.235	p.L79	0.996	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA14	HGNC	ENSG00000118298				71	0	0	28	11	28.2051
SEMA6C	0	genome.wustl.edu	37	1	151106915	151106915	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	151106915	151106915	G	T	SNP	SEMA6C	ENST00000368913	human	ensembl	74_37	-1	known	missense	c.1721	p.A574D	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6C	HGNC	ENSG00000143434				21	0	0	6	6	50
SEMA6C	0	genome.wustl.edu	37	1	151108068	151108068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	151108068	151108068	G	A	SNP	SEMA6C	ENST00000368913	human	ensembl	74_37	-1	known	missense	c.1432	p.R478W	0.424	superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6C	HGNC	ENSG00000143434				192	0	0	92	21	18.5841
LINGO4	0	genome.wustl.edu	37	1	151773687	151773687	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	151773687	151773687	C	T	SNP	LINGO4	ENST00000368820	human	ensembl	74_37	-1	known	nonsense	c.1494	p.W498*	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO4	HGNC	ENSG00000213171				386	0	0	159	29	15.4255
TCHH	0	genome.wustl.edu	37	1	152080052	152080052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	152080052	152080052	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.5641	p.R1881W	0.994	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				240	0	0	75	23	23.4694
FLG	0	genome.wustl.edu	37	1	152276179	152276179	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	152276179	152276179	C	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.11183	p.G3728V	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				562	0	0	231	54	18.9474
FLG	0	genome.wustl.edu	37	1	152277587	152277587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	152277587	152277587	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.9775	p.E3259K	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				645	2	0.309119	291	82	21.9839
LCE1C	0	genome.wustl.edu	37	1	152777656	152777656	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	152777656	152777656	G	A	SNP	LCE1C	ENST00000368768	human	ensembl	74_37	-1	known	missense	c.299	p.S100L	0.128	NULL	NULL	-	no_errors	LCE1C	HGNC	ENSG00000197084				167	0	0	59	16	21.3333
S100A7A	0	genome.wustl.edu	37	1	153390574	153390574	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	153390574	153390574	G	T	SNP	S100A7A	ENST00000329256	human	ensembl	74_37	+1	known	missense	c.16	p.A6S	0.082	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	S100A7A	HGNC	ENSG00000184330				241	0	0	100	13	11.5044
S100A6	0	genome.wustl.edu	37	1	153507253	153507253	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	153507253	153507253	C	A	SNP	S100A6	ENST00000368719	human	ensembl	74_37	-1	known	missense	c.192	p.K64N	0.872	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_S100_Ca-bd_sub,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	S100A6	HGNC	ENSG00000197956				139	0	0	73	5	6.41026
DENND4B	0	genome.wustl.edu	37	1	153907390	153907390	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	153907390	153907390	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	silent	c.2619	p.R873	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				277	0	0	111	12	9.7561
NUP210L	0	genome.wustl.edu	37	1	154125250	154125250	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	154125250	154125250	G	A	SNP	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	missense	c.302	p.P101L	0.976	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				127	0	0	47	10	17.5439
PYGO2	0	genome.wustl.edu	37	1	154931946	154931946	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	154931946	154931946	G	T	SNP	PYGO2	ENST00000368457	human	ensembl	74_37	-1	known	missense	c.530	p.P177H	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO2	HGNC	ENSG00000163348				152	0	0	34	12	26.087
SHC1	0	genome.wustl.edu	37	1	154942610	154942610	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	154942610	154942610	G	A	SNP	SHC1	ENST00000368445	human	ensembl	74_37	-1	known	silent	c.393	p.G131	1.000	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691				100	0	0	61	10	14.0845
CLK2	0	genome.wustl.edu	37	1	155233104	155233104	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	155233104	155233104	T	C	SNP	CLK2	ENST00000368361	human	ensembl	74_37	-1	known	missense	c.1405	p.T469A	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK2	HGNC	ENSG00000176444				75	0	0	41	5	10.8696
ARHGEF2	0	genome.wustl.edu	37	1	155920171	155920171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	155920171	155920171	G	A	SNP	ARHGEF2	ENST00000368315	human	ensembl	74_37	-1	known	missense	c.2809	p.R937W	0.998	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584				134	0	0	58	13	18.3099
BCAN	0	genome.wustl.edu	37	1	156622678	156622678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	156622678	156622678	G	A	SNP	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	missense	c.1936	p.A646T	1.000	pfscan_EG-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				159	0	0	59	10	14.4928
HDGF	0	genome.wustl.edu	37	1	156714905	156714905	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	156714905	156714905	G	A	SNP	HDGF	ENST00000368206	human	ensembl	74_37	-1	known	silent	c.246	p.Y82	0.999	pfam_PWWP_dom	pfam_PWWP_dom	-	no_errors	HDGF	HGNC	ENSG00000143321				91	0	0	40	9	18.3673
PEAR1	0	genome.wustl.edu	37	1	156883234	156883234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	156883234	156883234	G	A	SNP	PEAR1	ENST00000292357	human	ensembl	74_37	+1	known	missense	c.2563	p.A855T	0.988	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800				102	0	0	36	6	14.2857
OR10Z1	0	genome.wustl.edu	37	1	158577123	158577123	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	158577123	158577123	A	G	SNP	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	missense	c.895	p.T299A	0.009	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				371	0	0	155	24	13.4078
SPTA1	0	genome.wustl.edu	37	1	158651438	158651438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	158651438	158651438	C	T	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.410	p.R137H	0.003	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				137	0	0	89	11	11
ARHGAP30	0	genome.wustl.edu	37	1	161018315	161018315	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	161018315	161018315	C	T	SNP	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	silent	c.2496	p.G832	0.055	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				308	0	0	95	24	20.1681
PPOX	0	genome.wustl.edu	37	1	161140372	161140372	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	161140372	161140372	G	A	SNP	PPOX	ENST00000466452	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.225	-	-	-	no_errors	PPOX	HGNC	ENSG00000143224				161	0	0	80	18	18.3673
ADAMTS4	0	genome.wustl.edu	37	1	161166501	161166501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	161166501	161166501	C	T	SNP	ADAMTS4	ENST00000367996	human	ensembl	74_37	-1	known	missense	c.803	p.R268Q	0.999	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS4	HGNC	ENSG00000158859				211	0	0	80	25	23.8095
C1orf111	0	genome.wustl.edu	37	1	162344047	162344047	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	162344047	162344047	G	T	SNP	C1orf111	ENST00000367935	human	ensembl	74_37	-1	known	missense	c.577	p.P193T	1.000	NULL	NULL	-	no_errors	C1orf111	HGNC	ENSG00000171722				304	0	0	131	34	20.6061
SPEN	0	genome.wustl.edu	37	1	16259385	16259385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	16259385	16259385	C	T	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.6650	p.A2217V	0.998	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				180	0	0	72	11	13.253
PBX1	0	genome.wustl.edu	37	1	164776856	164776856	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	164776856	164776856	A	G	SNP	PBX1	ENST00000420696	human	ensembl	74_37	+1	known	missense	c.779	p.Y260C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX1	HGNC	ENSG00000185630				319	1	0.3125	95	17	15.1786
POGK	0	genome.wustl.edu	37	1	166819281	166819281	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	166819281	166819281	A	G	SNP	POGK	ENST00000367875	human	ensembl	74_37	+1	known	missense	c.1465	p.N489D	0.998	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_Brinker_DNA-bd,pfam_HTH_CenpB_DNA-bd_dom,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Homeodomain-like,smart_Krueppel-associated_box,smart_HTH_CenpB_DNA-bd_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	POGK	HGNC	ENSG00000143157				61	0	0	49	4	7.54717
NME7	0	genome.wustl.edu	37	1	169337064	169337064	+	RNA	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	169337064	169337064	T	C	SNP	NME7	ENST00000485609	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NME7	HGNC	ENSG00000143156				30	0	0	16	10	38.4615
PRRC2C	0	genome.wustl.edu	37	1	171494056	171494056	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	171494056	171494056	A	G	SNP	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	silent	c.1152	p.Q384	0.646	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523				38	0	0	14	3	17.6471
PIGC	0	genome.wustl.edu	37	1	172411799	172411799	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	172411799	172411799	G	A	SNP	PIGC	ENST00000478184	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PIGC	HGNC	ENSG00000135845				136	1	0.729927	61	16	20.7792
PADI3	0	genome.wustl.edu	37	1	17601227	17601227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	17601227	17601227	C	T	SNP	PADI3	ENST00000375460	human	ensembl	74_37	+1	known	missense	c.1253	p.A418V	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619				85	0	0	16	3	15.7895
PADI3	0	genome.wustl.edu	37	1	17609502	17609502	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	17609502	17609502	T	C	SNP	PADI3	ENST00000375460	human	ensembl	74_37	+1	known	silent	c.1923	p.H641	0.870	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619				99	0	0	38	6	13.6364
PADI6	0	genome.wustl.edu	37	1	17727905	17727905	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	17727905	17727905	G	A	SNP	PADI6	ENST00000358481	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	PADI6	HGNC	ENSG00000256049				57	0	0	21	5	19.2308
RASAL2	0	genome.wustl.edu	37	1	178063757	178063757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	178063757	178063757	G	A	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.130	p.V44I	1.000	NULL	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391				51	0	0	14	4	22.2222
ZNF648	0	genome.wustl.edu	37	1	182025680	182025680	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	182025680	182025680	G	A	SNP	ZNF648	ENST00000339948	human	ensembl	74_37	-1	novel	missense	c.1466	p.S489L	0.776	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930				43	0	0	21	3	12.5
SHCBP1L	0	genome.wustl.edu	37	1	182869270	182869270	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	182869270	182869270	C	T	SNP	SHCBP1L	ENST00000367547	human	ensembl	74_37	-1	known	missense	c.1810	p.V604I	0.976	superfamily_Pectin_lyase_fold/virulence	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	-	no_errors	SHCBP1L	HGNC	ENSG00000157060				26	0	0	25	7	21.875
TPR	0	genome.wustl.edu	37	1	186328998	186328998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	186328998	186328998	C	T	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.1322	p.R441H	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				123	0	0	53	14	20.8955
BRINP3	0	genome.wustl.edu	37	1	190068096	190068096	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	190068096	190068096	T	C	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	silent	c.1353	p.T451	0.955	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				116	0	0	66	10	13.1579
UBR4	0	genome.wustl.edu	37	1	19467976	19467976	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	19467976	19467976	C	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.8353	p.G2785C	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				104	0	0	51	10	16.3934
UBR4	0	genome.wustl.edu	37	1	19488197	19488197	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	19488197	19488197	G	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	silent	c.5061	p.G1687	0.982	superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				78	0	0	37	5	11.9048
PQLC2	0	genome.wustl.edu	37	1	19652849	19652849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	19652849	19652849	C	T	SNP	PQLC2	ENST00000375153	human	ensembl	74_37	+1	known	missense	c.493	p.R165W	0.059	NULL	superfamily_MFS_dom_general_subst_transpt,smart_CTNS	-	no_errors	PQLC2	HGNC	ENSG00000040487				47	0	0	10	3	23.0769
CFHR3	0	genome.wustl.edu	37	1	196749098	196749098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	196749098	196749098	G	A	SNP	CFHR3	ENST00000367425	human	ensembl	74_37	+1	known	missense	c.425	p.R142H	0.000	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR3	HGNC	ENSG00000116785				127	0	0	71	5	6.57895
ASPM	0	genome.wustl.edu	37	1	197093329	197093329	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	197093329	197093329	T	C	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.3301	p.R1101G	0.020	superfamily_CH-domain,superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				68	0	0	56	11	16.4179
ASPM	0	genome.wustl.edu	37	1	197108943	197108943	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	197108943	197108943	G	A	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	silent	c.1980	p.I660	0.979	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				195	0	0	71	18	20.2247
KIF21B	0	genome.wustl.edu	37	1	200944791	200944791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	200944791	200944791	C	T	SNP	KIF21B	ENST00000422435	human	ensembl	74_37	-1	known	missense	c.4450	p.E1484K	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852				39	0	0	32	8	20
IPO9	0	genome.wustl.edu	37	1	201840319	201840319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	201840319	201840319	C	T	SNP	IPO9	ENST00000361565	human	ensembl	74_37	+1	known	missense	c.2440	p.H814Y	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO9	HGNC	ENSG00000198700				217	0	0	99	19	16.1017
SYT2	0	genome.wustl.edu	37	1	202568475	202568475	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	202568475	202568475	C	T	SNP	SYT2	ENST00000367267	human	ensembl	74_37	-1	known	silent	c.924	p.P308	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT2	HGNC	ENSG00000143858				229	0	0	79	8	9.1954
PIK3C2B	0	genome.wustl.edu	37	1	204403573	204403573	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	204403573	204403573	A	G	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	missense	c.3680	p.I1227T	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				41	0	0	16	4	20
PIK3C2B	0	genome.wustl.edu	37	1	204419075	204419075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	204419075	204419075	G	A	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	missense	c.2137	p.P713S	1.000	pfam_PI3K_C2_dom,superfamily_C2_dom,smart_PI3K_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				40	0	0	12	4	25
YOD1	0	genome.wustl.edu	37	1	207222856	207222856	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	207222856	207222856	T	C	SNP	YOD1	ENST00000315927	human	ensembl	74_37	-1	known	missense	c.556	p.I186V	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	YOD1	HGNC	ENSG00000180667				123	0	0	81	19	19
CR2	0	genome.wustl.edu	37	1	207646356	207646356	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	207646356	207646356	C	T	SNP	CR2	ENST00000367057	human	ensembl	74_37	+1	known	missense	c.1810	p.H604Y	0.002	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322				84	0	0	38	9	19.1489
CR1	0	genome.wustl.edu	37	1	207748941	207748941	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	207748941	207748941	C	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	missense	c.4453	p.H1485Y	0.673	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				305	0	0	144	31	17.7143
CD46	0	genome.wustl.edu	37	1	207940426	207940426	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	207940426	207940426	T	C	SNP	CD46	ENST00000322875	human	ensembl	74_37	+1	known	missense	c.742	p.Y248H	0.512	pirsf_M_CF_CD46,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pirsf_M_CF_CD46,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CD46	HGNC	ENSG00000117335				113	0	0	55	5	8.33333
PLXNA2	0	genome.wustl.edu	37	1	208219401	208219401	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	208219401	208219401	T	C	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	missense	c.3317	p.Y1106C	1.000	superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				106	0	0	43	10	18.8679
HP1BP3	0	genome.wustl.edu	37	1	21097459	21097459	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	21097459	21097459	T	C	SNP	HP1BP3	ENST00000312239	human	ensembl	74_37	-1	known	silent	c.618	p.A206	0.986	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	-	no_errors	HP1BP3	HGNC	ENSG00000127483				106	0	0	50	10	16.6667
RPS6KC1	0	genome.wustl.edu	37	1	213403856	213403856	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	213403856	213403856	A	G	SNP	RPS6KC1	ENST00000366960	human	ensembl	74_37	+1	known	missense	c.1061	p.D354G	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643				75	0	0	43	7	14
USH2A	0	genome.wustl.edu	37	1	215844335	215844335	+	Silent	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	215844335	215844335	A	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.14112	p.P4704	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				240	0	0	98	12	10.9091
USH2A	0	genome.wustl.edu	37	1	216419954	216419954	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	216419954	216419954	C	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	nonsense	c.2782	p.G928*	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				223	0	0	104	6	5.45455
USH2A	0	genome.wustl.edu	37	1	216420288	216420288	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	216420288	216420288	G	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.2448	p.I816	0.005	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				138	0	0	73	4	5.19481
SPATA17	0	genome.wustl.edu	37	1	217955552	217955552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	217955552	217955552	C	T	SNP	SPATA17	ENST00000366933	human	ensembl	74_37	+1	known	missense	c.760	p.R254C	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPATA17	HGNC	ENSG00000162814				120	0	0	38	7	15.5556
LDLRAD2	0	genome.wustl.edu	37	1	22140919	22140919	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	22140919	22140919	G	A	SNP	LDLRAD2	ENST00000344642	human	ensembl	74_37	+1	known	silent	c.114	p.T38	0.788	superfamily_CUB_dom	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,superfamily_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD2	HGNC	ENSG00000187942				46	0	0	28	6	17.6471
HSPG2	0	genome.wustl.edu	37	1	22188329	22188329	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	22188329	22188329	G	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.4876	p.R1626S	1.000	pfam_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				52	0	0	17	4	19.0476
HSPG2	0	genome.wustl.edu	37	1	22199882	22199882	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	22199882	22199882	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3779	p.G1260A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				365	0	0	105	46	30.4636
PARP1	0	genome.wustl.edu	37	1	226576414	226576414	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	226576414	226576414	C	T	SNP	PARP1	ENST00000366794	human	ensembl	74_37	-1	known	silent	c.660	p.A220	1.000	pirsf_NAD_ADPRT	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799				222	1	0.44843	108	21	16.2791
WNT3A	0	genome.wustl.edu	37	1	228210473	228210473	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	228210473	228210473	C	T	SNP	WNT3A	ENST00000366753	human	ensembl	74_37	+1	known	silent	c.177	p.Y59	0.998	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3A	HGNC	ENSG00000154342				124	0	0	27	12	30.7692
OBSCN	0	genome.wustl.edu	37	1	228495098	228495098	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	228495098	228495098	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.12332	p.A4111V	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				25	0	0	20	8	28.5714
HIST3H2BB	0	genome.wustl.edu	37	1	228646120	228646120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	228646120	228646120	C	T	SNP	HIST3H2BB	ENST00000369160	human	ensembl	74_37	+1	known	missense	c.290	p.T97M	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST3H2BB	HGNC	ENSG00000196890				154	0	0	79	15	15.9574
ACTA1	0	genome.wustl.edu	37	1	229567918	229567918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	229567918	229567918	C	T	SNP	ACTA1	ENST00000366684	human	ensembl	74_37	-1	known	missense	c.631	p.V211M	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTA1	HGNC	ENSG00000143632				69	0	0	19	7	26.9231
DISC1	0	genome.wustl.edu	37	1	232002317	232002317	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	232002317	232002317	T	G	SNP	DISC1	ENST00000366636	human	ensembl	74_37	+1	known	missense	c.2030	p.L677R	0.000	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946				55	0	0	23	8	25.8065
ASAP3	0	genome.wustl.edu	37	1	23758199	23758199	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	23758199	23758199	C	T	SNP	ASAP3	ENST00000336689	human	ensembl	74_37	-1	known	missense	c.2536	p.V846I	0.778	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280				174	0	0	66	20	23.2558
RYR2	0	genome.wustl.edu	37	1	237659953	237659953	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	237659953	237659953	G	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	nonsense	c.2098	p.G700*	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				156	0	0	66	10	13.1579
RYR2	0	genome.wustl.edu	37	1	237806708	237806708	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	237806708	237806708	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.7297	p.V2433I	0.611	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				169	0	0	86	10	10.4167
RYR2	0	genome.wustl.edu	37	1	237947057	237947057	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	237947057	237947057	A	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.12063	p.K4021N	0.981	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				32	0	0	21	5	19.2308
TCEB3	0	genome.wustl.edu	37	1	24077884	24077884	+	Silent	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	24077884	24077884	C	A	SNP	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	silent	c.867	p.A289	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007				116	0	0	52	5	8.77193
PLD5	0	genome.wustl.edu	37	1	242277235	242277235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	242277235	242277235	C	T	SNP	PLD5	ENST00000536534	human	ensembl	74_37	-1	known	missense	c.1027	p.A343T	0.979	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287				113	0	0	47	12	20.339
SCCPDH	0	genome.wustl.edu	37	1	246903516	246903516	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	246903516	246903516	G	T	SNP	SCCPDH	ENST00000366510	human	ensembl	74_37	+1	known	missense	c.427	p.D143Y	1.000	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn	-	no_errors	SCCPDH	HGNC	ENSG00000143653				90	0	0	59	9	13.2353
OR2B11	0	genome.wustl.edu	37	1	247614943	247614943	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	247614943	247614943	C	T	SNP	OR2B11	ENST00000318749	human	ensembl	74_37	-1	known	silent	c.342	p.T114	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B11	HGNC	ENSG00000177535				117	0	0	60	14	18.9189
OR2G3	0	genome.wustl.edu	37	1	247769083	247769083	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	247769083	247769083	C	A	SNP	OR2G3	ENST00000320002	human	ensembl	74_37	+1	known	missense	c.196	p.L66I	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476				433	0	0	180	29	13.8756
OR11L1	0	genome.wustl.edu	37	1	248004808	248004808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	248004808	248004808	G	A	SNP	OR11L1	ENST00000355784	human	ensembl	74_37	-1	known	missense	c.391	p.R131C	0.975	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11L1	HGNC	ENSG00000197591				85	0	0	34	8	19.0476
OR2L8	0	genome.wustl.edu	37	1	248112563	248112563	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	248112563	248112563	T	C	SNP	OR2L8	ENST00000357191	human	ensembl	74_37	+1	known	missense	c.404	p.M135T	0.014	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936				257	0	0	153	23	13.0682
OR2T12	0	genome.wustl.edu	37	1	248458349	248458349	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	248458349	248458349	C	T	SNP	OR2T12	ENST00000317996	human	ensembl	74_37	-1	known	missense	c.532	p.E178K	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T12	HGNC	ENSG00000177201				155	0	0	57	17	22.973
OR2M7	0	genome.wustl.edu	37	1	248487386	248487386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	248487386	248487386	G	A	SNP	OR2M7	ENST00000317965	human	ensembl	74_37	-1	known	missense	c.485	p.A162V	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M7	HGNC	ENSG00000177186				422	0	0	205	53	20.5426
ZNF692	0	genome.wustl.edu	37	1	249151606	249151606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	249151606	249151606	C	T	SNP	ZNF692	ENST00000451251	human	ensembl	74_37	-1	known	missense	c.317	p.R106Q	0.941	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF692	HGNC	ENSG00000171163				137	0	0	62	18	22.5
C1orf63	0	genome.wustl.edu	37	1	25571717	25571717	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	25571717	25571717	G	T	SNP	C1orf63	ENST00000417642	human	ensembl	74_37	-1	known	missense	c.575	p.A192D	0.676	NULL	NULL	-	no_errors	C1orf63	HGNC	ENSG00000117616				153	1	0.649351	68	14	17.0732
ACTRT2	0	genome.wustl.edu	37	1	2939080	2939080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	2939080	2939080	C	T	SNP	ACTRT2	ENST00000378404	human	ensembl	74_37	+1	known	missense	c.830	p.S277L	0.741	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT2	HGNC	ENSG00000169717				273	0	0	94	22	18.9655
MATN1	0	genome.wustl.edu	37	1	31189718	31189718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	31189718	31189718	C	T	SNP	MATN1	ENST00000373765	human	ensembl	74_37	-1	known	missense	c.709	p.V237M	0.997	pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510				47	0	0	13	3	18.75
BAI2	0	genome.wustl.edu	37	1	32207516	32207516	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	32207516	32207516	C	T	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	silent	c.1470	p.T490	0.990	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753				98	0	0	47	7	12.963
KPNA6	0	genome.wustl.edu	37	1	32623924	32623924	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	32623924	32623924	G	A	SNP	KPNA6	ENST00000545542	human	ensembl	74_37	+1	known	missense	c.403	p.V135M	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA6	HGNC	ENSG00000025800				236	1	0.421941	106	30	22.0588
HDAC1	0	genome.wustl.edu	37	1	32793088	32793088	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	32793088	32793088	G	A	SNP	HDAC1	ENST00000490081	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HDAC1	HGNC	ENSG00000116478				137	0	0	39	16	29.0909
ZNF362	0	genome.wustl.edu	37	1	33764618	33764618	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	33764618	33764618	G	A	SNP	ZNF362	ENST00000373428	human	ensembl	74_37	+1	known	missense	c.1234	p.G412S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094				138	0	0	49	5	9.25926
ARHGEF16	0	genome.wustl.edu	37	1	3390004	3390004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	3390004	3390004	G	A	SNP	ARHGEF16	ENST00000378378	human	ensembl	74_37	+1	known	missense	c.1223	p.R408Q	0.018	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF16	HGNC	ENSG00000130762				162	0	0	63	20	24.0964
CSMD2	0	genome.wustl.edu	37	1	33985245	33985245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	33985245	33985245	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.10769	p.A3590V	0.977	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				509	0	0	175	33	15.8654
NCDN	0	genome.wustl.edu	37	1	36026370	36026370	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	36026370	36026370	C	T	SNP	NCDN	ENST00000356090	human	ensembl	74_37	+1	known	silent	c.618	p.A206	0.032	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129				87	0	0	39	10	20.4082
NCDN	0	genome.wustl.edu	37	1	36028834	36028834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	36028834	36028834	G	A	SNP	NCDN	ENST00000356090	human	ensembl	74_37	+1	known	missense	c.1417	p.V473I	0.927	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129				60	0	0	29	4	12.1212
TFAP2E	0	genome.wustl.edu	37	1	36056352	36056352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	36056352	36056352	G	A	SNP	TFAP2E	ENST00000373235	human	ensembl	74_37	+1	known	missense	c.1022	p.R341H	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2E	HGNC	ENSG00000116819				27	0	0	3	3	50
TRAPPC3	0	genome.wustl.edu	37	1	36602646	36602646	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	36602646	36602646	C	T	SNP	TRAPPC3	ENST00000462715	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.150	-	-	-	no_errors	TRAPPC3	HGNC	ENSG00000054116				18	0	0	10	2	16.6667
GRIK3	0	genome.wustl.edu	37	1	37319269	37319269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	37319269	37319269	G	A	SNP	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	missense	c.1159	p.R387W	0.999	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873				131	0	0	37	11	22.9167
EPHA10	0	genome.wustl.edu	37	1	38187410	38187410	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	38187410	38187410	C	T	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	missense	c.2068	p.G690S	0.999	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				59	0	0	20	2	9.09091
MACF1	0	genome.wustl.edu	37	1	39910508	39910508	+	Splice_Site	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	39910508	39910508	G	A	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	splice_site	c.13428+1	e75+1	1.000	-	-	-	no_errors	MACF1	HGNC	ENSG00000127603				111	0	0	45	4	8.16327
NT5C1A	0	genome.wustl.edu	37	1	40124850	40124850	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	40124850	40124850	A	G	SNP	NT5C1A	ENST00000235628	human	ensembl	74_37	-1	known	silent	c.1050	p.G350	0.035	pfam_5-nucleotidase	pfam_5-nucleotidase	-	no_errors	NT5C1A	HGNC	ENSG00000116981				107	0	0	50	12	19.3548
YBX1	0	genome.wustl.edu	37	1	43166532	43166532	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	43166532	43166532	A	C	SNP	YBX1	ENST00000321358	human	ensembl	74_37	+1	known	missense	c.821	p.Q274P	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX1	HGNC	ENSG00000065978				157	0	0	41	6	12.766
C1orf50	0	genome.wustl.edu	37	1	43240471	43240471	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	43240471	43240471	C	A	SNP	C1orf50	ENST00000372525	human	ensembl	74_37	+1	known	missense	c.346	p.P116T	1.000	pfam_DUF2452,superfamily_Cytidine_deaminase-like	pfam_DUF2452,superfamily_Cytidine_deaminase-like	-	no_errors	C1orf50	HGNC	ENSG00000164008				201	0	0	83	17	17
PTPRF	0	genome.wustl.edu	37	1	44010775	44010775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	44010775	44010775	C	T	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	missense	c.29	p.T10M	0.966	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949				8	0	0	4	2	33.3333
PTPRF	0	genome.wustl.edu	37	1	44035352	44035352	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	44035352	44035352	C	T	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	silent	c.471	p.A157	0.991	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949				123	0	0	41	15	26.7857
PTPRF	0	genome.wustl.edu	37	1	44069443	44069443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	44069443	44069443	G	A	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	missense	c.2620	p.D874N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949				155	0	0	58	11	15.942
SLC6A9	0	genome.wustl.edu	37	1	44482788	44482788	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	44482788	44482788	C	T	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	silent	c.18	p.T6	0.409	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517				55	0	0	14	5	26.3158
DMAP1	0	genome.wustl.edu	37	1	44680454	44680454	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	44680454	44680454	C	T	SNP	DMAP1	ENST00000315913	human	ensembl	74_37	+1	known	missense	c.277	p.R93W	0.999	NULL	pfam_DMAP1,superfamily_Homeodomain-like	-	no_errors	DMAP1	HGNC	ENSG00000178028				108	0	0	51	9	15
ERI3	0	genome.wustl.edu	37	1	44713617	44713617	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	44713617	44713617	C	T	SNP	ERI3	ENST00000372257	human	ensembl	74_37	-1	known	missense	c.925	p.G309S	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ERI3	HGNC	ENSG00000117419				119	0	0	44	5	10.2041
HPDL	0	genome.wustl.edu	37	1	45793416	45793416	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	45793416	45793416	T	C	SNP	HPDL	ENST00000334815	human	ensembl	74_37	+1	known	missense	c.596	p.L199P	0.590	pirsf_4OHPhenylPyrv_dOase	pirsf_4OHPhenylPyrv_dOase	-	no_errors	HPDL	HGNC	ENSG00000186603				94	0	0	38	11	22.449
FAAH	0	genome.wustl.edu	37	1	46876093	46876093	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	46876093	46876093	G	A	SNP	FAAH	ENST00000243167	human	ensembl	74_37	+1	known	missense	c.1199	p.C400Y	1.000	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480				636	0	0	201	54	21.1765
C1orf87	0	genome.wustl.edu	37	1	60506705	60506705	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	60506705	60506705	C	T	SNP	C1orf87	ENST00000371201	human	ensembl	74_37	-1	known	nonsense	c.441	p.W147*	0.953	NULL	NULL	-	no_errors	C1orf87	HGNC	ENSG00000162598				155	0	0	74	18	19.5652
CHD5	0	genome.wustl.edu	37	1	6215730	6215730	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	6215730	6215730	G	A	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	silent	c.435	p.D145	0.598	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				118	0	0	43	10	18.8679
USP1	0	genome.wustl.edu	37	1	62916034	62916034	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	62916034	62916034	G	A	SNP	USP1	ENST00000339950	human	ensembl	74_37	+1	known	silent	c.1740	p.A580	0.030	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP1	HGNC	ENSG00000162607				185	0	0	84	17	16.8317
NOL9	0	genome.wustl.edu	37	1	6585974	6585974	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	6585974	6585974	A	G	SNP	NOL9	ENST00000377705	human	ensembl	74_37	-1	known	silent	c.2049	p.P683	0.000	NULL	pfam_Pre-mRNA_cleavage_cplxII_Clp1,superfamily_P-loop_NTPase	-	no_errors	NOL9	HGNC	ENSG00000162408				285	0	0	117	29	19.863
LRRIQ3	0	genome.wustl.edu	37	1	74507249	74507249	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	74507249	74507249	C	T	SNP	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	missense	c.1366	p.A456T	0.000	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				162	0	0	80	15	15.7895
LRRIQ3	0	genome.wustl.edu	37	1	74649285	74649285	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	74649285	74649285	T	C	SNP	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	silent	c.84	p.K28	1.000	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				41	0	0	24	9	27.2727
COL24A1	0	genome.wustl.edu	37	1	86591529	86591529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	86591529	86591529	G	A	SNP	COL24A1	ENST00000370571	human	ensembl	74_37	-1	known	missense	c.490	p.H164Y	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502				50	0	0	47	7	12.963
LMO4	0	genome.wustl.edu	37	1	87805253	87805253	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	87805253	87805253	G	A	SNP	LMO4	ENST00000370542	human	ensembl	74_37	+1	known	missense	c.271	p.G91R	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO4	HGNC	ENSG00000143013				70	0	0	29	6	17.1429
PIK3CD	0	genome.wustl.edu	37	1	9780209	9780209	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	9780209	9780209	G	A	SNP	PIK3CD	ENST00000536656	human	ensembl	74_37	+1	known	missense	c.1274	p.R425H	0.947	pfam_PI3K_C2_dom,superfamily_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608				142	0	0	45	11	19.6429
LPPR4	0	genome.wustl.edu	37	1	99772446	99772446	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	99772446	99772446	C	T	SNP	LPPR4	ENST00000370185	human	ensembl	74_37	+1	known	silent	c.2172	p.R724	0.981	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR4	Uniprot_gn	ENSG00000117600				95	0	0	46	10	17.8571
CNNM1	0	genome.wustl.edu	37	10	101147941	101147941	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	101147941	101147941	G	A	SNP	CNNM1	ENST00000356713	human	ensembl	74_37	+1	known	missense	c.2557	p.E853K	0.975	NULL	pfam_DUF21,pfam_CBS_dom	-	no_errors	CNNM1	HGNC	ENSG00000119946				114	0	0	42	7	14.2857
CPN1	0	genome.wustl.edu	37	10	101824970	101824970	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	101824970	101824970	G	A	SNP	CPN1	ENST00000370418	human	ensembl	74_37	-1	known	missense	c.734	p.T245M	0.988	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054				162	0	0	80	22	21.5686
C10orf2	0	genome.wustl.edu	37	10	102749148	102749148	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	102749148	102749148	G	A	SNP	C10orf2	ENST00000311916	human	ensembl	74_37	+1	known	missense	c.1181	p.R394H	1.000	pfam_DNA_helicase_DnaB-like_C,superfamily_P-loop_NTPase,pfscan_DNA_helicase_DnaB-like_C	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,superfamily_P-loop_NTPase,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815				172	0	0	59	7	10.6061
PPRC1	0	genome.wustl.edu	37	10	103904094	103904094	+	RNA	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	103904094	103904094	T	C	SNP	PPRC1	ENST00000462933	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PPRC1	HGNC	ENSG00000148840				71	0	0	23	4	14.8148
CUEDC2	0	genome.wustl.edu	37	10	104183130	104183130	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	104183130	104183130	G	A	SNP	CUEDC2	ENST00000465409	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CUEDC2	HGNC	ENSG00000107874				162	0	0	75	11	12.7907
MIR1307	0	genome.wustl.edu	37	10	105154068	105154068	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	105154068	105154068	G	A	SNP	MIR1307	ENST00000408840	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.204	-	-	-	no_errors	MIR1307	HGNC	ENSG00000221767				173	0	0	60	15	20
PDCD11	0	genome.wustl.edu	37	10	105178275	105178275	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	105178275	105178275	C	A	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	missense	c.1990	p.L664I	0.918	superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				143	0	0	67	14	17.284
ABLIM1	0	genome.wustl.edu	37	10	116247743	116247743	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	116247743	116247743	A	T	SNP	ABLIM1	ENST00000277895	human	ensembl	74_37	-1	known	missense	c.1015	p.S339T	0.945	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM1	HGNC	ENSG00000099204				398	0	0	126	29	18.7097
TIAL1	0	genome.wustl.edu	37	10	121342098	121342098	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	121342098	121342098	T	C	SNP	TIAL1	ENST00000369093	human	ensembl	74_37	-1	known	missense	c.152	p.N51S	0.988	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIAL1	HGNC	ENSG00000151923				109	0	0	63	8	11.2676
BAG3	0	genome.wustl.edu	37	10	121429568	121429568	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	121429568	121429568	C	T	SNP	BAG3	ENST00000369085	human	ensembl	74_37	+1	known	missense	c.386	p.A129V	0.000	NULL	pfam_BAG_domain,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_BAG_domain,pfscan_BAG_domain,pfscan_WW_dom	-	no_errors	BAG3	HGNC	ENSG00000151929				223	0	0	96	6	5.88235
SEC23IP	0	genome.wustl.edu	37	10	121691686	121691686	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	121691686	121691686	C	T	SNP	SEC23IP	ENST00000369075	human	ensembl	74_37	+1	known	nonsense	c.2614	p.Q872*	1.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD	-	no_errors	SEC23IP	HGNC	ENSG00000107651				129	0	0	66	9	12
CDC123	0	genome.wustl.edu	37	10	12288245	12288245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	12288245	12288245	G	A	SNP	CDC123	ENST00000281141	human	ensembl	74_37	+1	known	missense	c.815	p.G272D	0.998	pfam_D123,pirsf_Cell_div_Cdc123	pfam_D123,pirsf_Cell_div_Cdc123	-	no_errors	CDC123	HGNC	ENSG00000151465				165	0	0	103	14	11.9658
TACC2	0	genome.wustl.edu	37	10	123842944	123842944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	123842944	123842944	G	A	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.929	p.C310Y	0.001	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				187	0	0	71	16	18.3908
KNDC1	0	genome.wustl.edu	37	10	135009203	135009203	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	135009203	135009203	G	A	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	missense	c.1612	p.A538T	0.991	superfamily_Kinase-like_dom,smart_KIND	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				44	0	0	24	5	17.2414
MTG1	0	genome.wustl.edu	37	10	135233048	135233048	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	135233048	135233048	G	A	SNP	MTG1	ENST00000317502	human	ensembl	74_37	+1	known	missense	c.817	p.A273T	0.966	pirsf_GTPase_MTG1,tigrfam_GTP-bd_ribosome_bgen_YlqF	pfam_GTP_binding_domain,superfamily_P-loop_NTPase,pirsf_GTPase_MTG1,tigrfam_GTP-bd_ribosome_bgen_YlqF	-	no_errors	MTG1	HGNC	ENSG00000148824				24	0	0	13	3	18.75
CUBN	0	genome.wustl.edu	37	10	17061870	17061870	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	17061870	17061870	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.4130	p.R1377H	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				108	0	0	41	9	18
ARMC3	0	genome.wustl.edu	37	10	23235188	23235188	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	23235188	23235188	A	C	SNP	ARMC3	ENST00000298032	human	ensembl	74_37	+1	known	missense	c.164	p.K55T	1.000	superfamily_ARM-type_fold	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309				106	0	0	30	6	16.6667
ZMYND11	0	genome.wustl.edu	37	10	255984	255984	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	255984	255984	A	G	SNP	ZMYND11	ENST00000381591	human	ensembl	74_37	+1	known	missense	c.272	p.E91G	1.000	superfamily_Znf_FYVE_PHD	pfam_PWWP_dom,pfam_Bromodomain,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND11	HGNC	ENSG00000015171				166	0	0	61	11	15.2778
ANKRD26	0	genome.wustl.edu	37	10	27311608	27311608	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	27311608	27311608	T	C	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	missense	c.4142	p.N1381S	0.038	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				76	0	0	39	7	15.2174
SVIL	0	genome.wustl.edu	37	10	29821496	29821496	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	29821496	29821496	C	T	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	silent	c.1800	p.A600	0.001	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				62	0	0	34	5	12.8205
PFKP	0	genome.wustl.edu	37	10	3147337	3147337	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	3147337	3147337	G	T	SNP	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	missense	c.651	p.M217I	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				56	0	0	26	6	18.75
C10orf68	0	genome.wustl.edu	37	10	33018260	33018260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	33018260	33018260	C	T	SNP	C10orf68	ENST00000375025	human	ensembl	74_37	+1	known	missense	c.701	p.T234M	0.328	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076				96	0	0	46	12	20.6897
CUL2	0	genome.wustl.edu	37	10	35299267	35299267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	35299267	35299267	G	A	SNP	CUL2	ENST00000537177	human	ensembl	74_37	-1	known	missense	c.2267	p.S756L	0.988	smart_Cullin_neddylation_domain	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL2	HGNC	ENSG00000108094				70	0	0	30	8	21.0526
GJD4	0	genome.wustl.edu	37	10	35896743	35896743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	35896743	35896743	C	T	SNP	GJD4	ENST00000321660	human	ensembl	74_37	+1	known	missense	c.302	p.A101V	0.004	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJD4	HGNC	ENSG00000177291				81	0	0	46	7	13.2075
DIP2C	0	genome.wustl.edu	37	10	394598	394598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	394598	394598	C	T	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	missense	c.3214	p.V1072I	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				268	0	0	89	24	21.2389
FLJ31813	0	genome.wustl.edu	37	10	51818917	51818917	+	RNA	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	51818917	51818917	T	C	SNP	FLJ31813	ENST00000456967	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.091	-	-	-	no_errors	RP11-324H6.5	Clone_based_vega_gene	ENSG00000235618				51	0	0	16	4	20
PCDH15	0	genome.wustl.edu	37	10	55582606	55582606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	55582606	55582606	G	A	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.4880	p.T1627I	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				232	0	0	102	21	17.0732
FAM208B	0	genome.wustl.edu	37	10	5777426	5777426	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	5777426	5777426	C	A	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	missense	c.1364	p.P455H	0.002	NULL	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				230	0	0	88	18	16.9811
ANK3	0	genome.wustl.edu	37	10	61833777	61833777	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	61833777	61833777	T	C	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.6862	p.K2288E	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				248	0	0	124	19	13.2867
ZNF365	0	genome.wustl.edu	37	10	64403708	64403708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	64403708	64403708	C	T	SNP	ZNF365	ENST00000395251	human	ensembl	74_37	+1	known	missense	c.23	p.T8I	0.573	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311				143	0	0	57	9	13.6364
EGR2	0	genome.wustl.edu	37	10	64574120	64574120	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	64574120	64574120	A	G	SNP	EGR2	ENST00000242480	human	ensembl	74_37	-1	known	missense	c.278	p.M93T	1.000	NULL	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR2	HGNC	ENSG00000122877				95	0	0	54	11	16.9231
KIN	0	genome.wustl.edu	37	10	7798106	7798106	+	Splice_Site	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	7798106	7798106	C	A	SNP	KIN	ENST00000379562	human	ensembl	74_37	-1	known	splice_site	c.1120-1	e13-1	1.000	-	-	-	no_errors	KIN	HGNC	ENSG00000151657				84	0	0	26	10	27.7778
DLG5	0	genome.wustl.edu	37	10	79614032	79614032	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	79614032	79614032	G	A	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	silent	c.633	p.N211	0.984	pfam_DUF622	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				88	0	0	32	12	27.2727
ACTA2	0	genome.wustl.edu	37	10	90706915	90706915	+	RNA	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	90706915	90706915	T	C	SNP	ACTA2	ENST00000488967	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACTA2	HGNC	ENSG00000107796				63	0	0	32	4	11.1111
IFIT2	0	genome.wustl.edu	37	10	91066903	91066903	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	91066903	91066903	A	C	SNP	IFIT2	ENST00000371826	human	ensembl	74_37	+1	known	missense	c.1190	p.E397A	0.031	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT2	HGNC	ENSG00000119922				147	0	0	71	14	16.4706
RPP30	0	genome.wustl.edu	37	10	92656136	92656136	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	92656136	92656136	G	A	SNP	RPP30	ENST00000413330	human	ensembl	74_37	+1	known	silent	c.684	p.A228	0.000	superfamily_Pol/histidinol_Pase-like	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	-	no_errors	RPP30	HGNC	ENSG00000148688				72	0	0	29	7	19.4444
MYOF	0	genome.wustl.edu	37	10	95076536	95076536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	95076536	95076536	C	T	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.5633	p.R1878Q	0.789	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				104	1	0.952381	49	8	14.0351
KIAA1377	0	genome.wustl.edu	37	11	101834578	101834578	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	101834578	101834578	C	T	SNP	KIAA1377	ENST00000263468	human	ensembl	74_37	+1	known	missense	c.2812	p.P938S	0.004	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318				179	0	0	60	12	16.6667
KBTBD3	0	genome.wustl.edu	37	11	105929633	105929633	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	105929633	105929633	C	T	SNP	KBTBD3	ENST00000526793	human	ensembl	74_37	-1	known	silent	c.192	p.P64	0.700	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD3	HGNC	ENSG00000182359				68	0	0	35	7	16.6667
ATM	0	genome.wustl.edu	37	11	108160475	108160475	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	108160475	108160475	G	T	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.4383	p.W1461C	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				57	0	0	40	9	18.3673
ZC3H12C	0	genome.wustl.edu	37	11	110035729	110035729	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	110035729	110035729	A	G	SNP	ZC3H12C	ENST00000278590	human	ensembl	74_37	+1	known	missense	c.1919	p.Y640C	0.864	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289				137	0	0	57	13	18.5714
ARHGAP20	0	genome.wustl.edu	37	11	110451319	110451319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	110451319	110451319	C	T	SNP	ARHGAP20	ENST00000260283	human	ensembl	74_37	-1	known	missense	c.2351	p.G784D	0.000	NULL	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727				185	1	0.537634	99	12	10.8108
USP28	0	genome.wustl.edu	37	11	113699980	113699980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	113699980	113699980	G	A	SNP	USP28	ENST00000003302	human	ensembl	74_37	-1	known	missense	c.998	p.A333V	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_UBA-like,pfscan_Peptidase_C19/C67	-	no_errors	USP28	HGNC	ENSG00000048028				117	0	0	39	10	20.4082
IL10RA	0	genome.wustl.edu	37	11	117869725	117869725	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	117869725	117869725	A	C	SNP	IL10RA	ENST00000227752	human	ensembl	74_37	+1	known	missense	c.1106	p.D369A	0.999	NULL	superfamily_Fibronectin_type3	-	no_errors	IL10RA	HGNC	ENSG00000110324				83	0	0	22	6	21.4286
MPZL3	0	genome.wustl.edu	37	11	118122995	118122995	+	Silent	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	118122995	118122995	T	G	SNP	MPZL3	ENST00000278949	human	ensembl	74_37	-1	known	silent	c.15	p.G5	0.138	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Myelin_P0	-	no_errors	MPZL3	HGNC	ENSG00000160588				150	0	0	53	7	11.6667
KMT2A	0	genome.wustl.edu	37	11	118343010	118343010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	118343010	118343010	C	T	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.1136	p.A379V	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				156	0	0	52	15	22.3881
MFRP	0	genome.wustl.edu	37	11	119212679	119212679	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	119212679	119212679	G	T	SNP	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	missense	c.1403	p.P468H	0.971	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				94	0	0	40	4	9.09091
GRIK4	0	genome.wustl.edu	37	11	120827494	120827494	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	120827494	120827494	C	T	SNP	GRIK4	ENST00000527524	human	ensembl	74_37	+1	known	missense	c.1706	p.T569M	0.996	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403				196	0	0	66	11	14.2857
TECTA	0	genome.wustl.edu	37	11	121016339	121016339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	121016339	121016339	G	A	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.3619	p.V1207M	0.983	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				251	1	0.396825	143	20	12.2699
C11orf63	0	genome.wustl.edu	37	11	122817342	122817342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	122817342	122817342	G	A	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	missense	c.1771	p.V591I	0.000	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				48	0	0	41	11	21.1538
MICALCL	0	genome.wustl.edu	37	11	12315180	12315180	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	12315180	12315180	C	G	SNP	MICALCL	ENST00000256186	human	ensembl	74_37	+1	known	missense	c.202	p.R68G	0.003	NULL	pfam_DUF3585,smart_ProQ/FinO	-	no_errors	MICALCL	HGNC	ENSG00000133808				409	1	0.243902	175	16	8.37696
SRPR	0	genome.wustl.edu	37	11	126135176	126135176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	126135176	126135176	G	A	SNP	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	missense	c.1298	p.T433I	1.000	pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	-	no_errors	SRPR	HGNC	ENSG00000182934				90	0	0	37	8	17.7778
KIRREL3	0	genome.wustl.edu	37	11	126314880	126314880	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	126314880	126314880	C	T	SNP	KIRREL3	ENST00000525144	human	ensembl	74_37	-1	known	missense	c.1246	p.V416I	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL3	HGNC	ENSG00000149571				147	0	0	47	9	16.0714
ETS1	0	genome.wustl.edu	37	11	128391832	128391832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	128391832	128391832	C	T	SNP	ETS1	ENST00000319397	human	ensembl	74_37	-1	known	missense	c.58	p.D20N	0.999	pirsf_Transform_prot_C-ets	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_Transform_prot_C-ets,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETS1	HGNC	ENSG00000134954				112	0	0	44	4	8.33333
ARHGAP32	0	genome.wustl.edu	37	11	128842462	128842462	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	128842462	128842462	C	T	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	silent	c.3897	p.T1299	0.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				146	0	0	63	13	17.1053
LGR4	0	genome.wustl.edu	37	11	27390555	27390555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	27390555	27390555	G	A	SNP	LGR4	ENST00000379214	human	ensembl	74_37	-1	known	missense	c.1715	p.S572L	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_7TM,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213				155	0	0	55	15	21.4286
HIPK3	0	genome.wustl.edu	37	11	33362656	33362656	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	33362656	33362656	G	A	SNP	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	missense	c.1756	p.G586R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				50	0	0	32	10	23.8095
KIAA1549L	0	genome.wustl.edu	37	11	33565180	33565180	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	33565180	33565180	G	T	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	missense	c.1180	p.A394S	0.091	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427				50	0	0	34	6	15
KIAA1549L	0	genome.wustl.edu	37	11	33565323	33565323	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	33565323	33565323	A	G	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	silent	c.1323	p.L441	0.125	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427				259	0	0	85	30	26.087
PHF21A	0	genome.wustl.edu	37	11	46001356	46001356	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	46001356	46001356	G	A	SNP	PHF21A	ENST00000257821	human	ensembl	74_37	-1	known	silent	c.315	p.H105	0.857	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21A	HGNC	ENSG00000135365				98	0	0	52	10	16.129
AMBRA1	0	genome.wustl.edu	37	11	46455113	46455113	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	46455113	46455113	G	A	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	nonsense	c.2887	p.R963*	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497				79	0	0	36	9	20
LRP4	0	genome.wustl.edu	37	11	46895077	46895077	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	46895077	46895077	G	T	SNP	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	missense	c.4297	p.L1433M	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569				169	0	0	59	7	10.6061
PSMC3	0	genome.wustl.edu	37	11	47444173	47444173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	47444173	47444173	G	A	SNP	PSMC3	ENST00000298852	human	ensembl	74_37	-1	known	missense	c.836	p.A279V	1.000	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC3	HGNC	ENSG00000165916				147	0	0	75	18	19.3548
RAPSN	0	genome.wustl.edu	37	11	47470379	47470379	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	47470379	47470379	C	T	SNP	RAPSN	ENST00000298854	human	ensembl	74_37	-1	known	silent	c.138	p.L46	1.000	pfam_Rapsyn_myristoylation/link_N	pfam_Rapsyn_myristoylation/link_N,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING,prints_Postsynaptic	-	no_errors	RAPSN	HGNC	ENSG00000165917				134	0	0	49	15	23.4375
NUP160	0	genome.wustl.edu	37	11	47827905	47827905	+	RNA	SNP	T	T	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	47827905	47827905	T	A	SNP	NUP160	ENST00000526569	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NUP160	HGNC	ENSG00000030066				29	0	0	18	6	25
PTPRJ	0	genome.wustl.edu	37	11	48149351	48149351	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	48149351	48149351	C	T	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	silent	c.1113	p.D371	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				137	0	0	57	20	25.974
OR51G1	0	genome.wustl.edu	37	11	4945194	4945194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	4945194	4945194	C	T	SNP	OR51G1	ENST00000321961	human	ensembl	74_37	-1	known	missense	c.376	p.V126M	0.260	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G1	HGNC	ENSG00000176879				113	0	0	41	6	12.766
RNH1	0	genome.wustl.edu	37	11	502099	502099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	502099	502099	C	T	SNP	RNH1	ENST00000354420	human	ensembl	74_37	-1	known	missense	c.64	p.E22K	0.493	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	RNH1	HGNC	ENSG00000023191				40	0	0	21	4	16
OR5D13	0	genome.wustl.edu	37	11	55541171	55541171	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	55541171	55541171	C	T	SNP	OR5D13	ENST00000361760	human	ensembl	74_37	+1	known	silent	c.258	p.N86	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D13	HGNC	ENSG00000198877				197	0	0	100	26	20.6349
OR8H2	0	genome.wustl.edu	37	11	55872620	55872620	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	55872620	55872620	G	T	SNP	OR8H2	ENST00000313503	human	ensembl	74_37	+1	known	silent	c.102	p.L34	0.001	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767				424	0	0	212	52	19.697
OR5R1	0	genome.wustl.edu	37	11	56185444	56185444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	56185444	56185444	G	A	SNP	OR5R1	ENST00000312253	human	ensembl	74_37	-1	known	missense	c.265	p.R89C	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5R1	HGNC	ENSG00000174942				63	0	0	42	9	17.6471
OR5M9	0	genome.wustl.edu	37	11	56230791	56230791	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	56230791	56230791	G	T	SNP	OR5M9	ENST00000279791	human	ensembl	74_37	-1	known	missense	c.87	p.F29L	0.966	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M9	HGNC	ENSG00000150269				71	0	0	31	7	18.4211
OR4D9	0	genome.wustl.edu	37	11	59282922	59282922	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	59282922	59282922	C	T	SNP	OR4D9	ENST00000329328	human	ensembl	74_37	+1	known	silent	c.537	p.C179	0.993	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D9	HGNC	ENSG00000172742				282	1	0.353357	108	28	20.5882
PHRF1	0	genome.wustl.edu	37	11	598487	598487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	598487	598487	C	T	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.1009	p.R337W	0.738	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				48	0	0	20	6	23.0769
ATG2A	0	genome.wustl.edu	37	11	64679671	64679671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	64679671	64679671	C	T	SNP	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	missense	c.973	p.E325K	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046				183	0	0	62	15	19.4805
AP5B1	0	genome.wustl.edu	37	11	65545526	65545526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	65545526	65545526	C	T	SNP	AP5B1	ENST00000532090	human	ensembl	74_37	-1	novel	missense	c.2438	p.R813H	0.155	NULL	NULL	-	no_errors	AP5B1	HGNC	ENSG00000254470				98	0	0	40	7	14.8936
CNIH2	0	genome.wustl.edu	37	11	66050763	66050763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	66050763	66050763	C	T	SNP	CNIH2	ENST00000311445	human	ensembl	74_37	+1	known	missense	c.356	p.A119V	1.000	pfam_Cornichon	pfam_Cornichon	-	no_errors	CNIH2	HGNC	ENSG00000174871				308	0	0	137	19	12.1795
CORO1B	0	genome.wustl.edu	37	11	67207818	67207818	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	67207818	67207818	G	A	SNP	CORO1B	ENST00000341356	human	ensembl	74_37	-1	known	silent	c.849	p.Y283	0.997	pfam_DUF1900,superfamily_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1B	HGNC	ENSG00000172725				126	0	0	65	4	5.7971
TBX10	0	genome.wustl.edu	37	11	67402652	67402652	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	67402652	67402652	C	T	SNP	TBX10	ENST00000335385	human	ensembl	74_37	-1	known	silent	c.90	p.R30	0.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX10	HGNC	ENSG00000167800				145	0	0	45	14	23.7288
PPP6R3	0	genome.wustl.edu	37	11	68338536	68338536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	68338536	68338536	G	A	SNP	PPP6R3	ENST00000393799	human	ensembl	74_37	+1	known	missense	c.1307	p.R436Q	1.000	pfam_SAPS	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R3	HGNC	ENSG00000110075				64	0	0	25	5	16.6667
MRPL21	0	genome.wustl.edu	37	11	68660885	68660885	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	68660885	68660885	G	T	SNP	MRPL21	ENST00000362034	human	ensembl	74_37	-1	known	silent	c.435	p.G145	0.997	tigrfam_Ribosomal_L21	tigrfam_Ribosomal_L21	-	no_errors	MRPL21	HGNC	ENSG00000197345				130	0	0	20	24	54.5455
MRGPRD	0	genome.wustl.edu	37	11	68748320	68748320	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	68748320	68748320	T	G	SNP	MRGPRD	ENST00000309106	human	ensembl	74_37	-1	known	missense	c.136	p.S46R	0.014	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRD	HGNC	ENSG00000172938				83	0	0	35	6	14.6341
TPCN2	0	genome.wustl.edu	37	11	68835058	68835058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	68835058	68835058	G	A	SNP	TPCN2	ENST00000294309	human	ensembl	74_37	+1	known	missense	c.814	p.A272T	0.956	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	TPCN2	HGNC	ENSG00000162341				119	0	0	30	15	33.3333
CTTN	0	genome.wustl.edu	37	11	70266595	70266595	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	70266595	70266595	C	T	SNP	CTTN	ENST00000301843	human	ensembl	74_37	+1	known	nonsense	c.769	p.Q257*	1.000	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733				138	0	0	40	14	25.9259
DHCR7	0	genome.wustl.edu	37	11	71155135	71155135	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	71155135	71155135	G	A	SNP	DHCR7	ENST00000355527	human	ensembl	74_37	-1	known	silent	c.225	p.I75	0.000	NULL	pfam_Ergosterol_biosynth_ERG4_ERG24	-	no_errors	DHCR7	HGNC	ENSG00000172893				50	0	0	11	2	15.3846
ENSG00000256518	0	genome.wustl.edu	37	11	71870037	71870037	+	RNA	SNP	C	C	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	71870037	71870037	C	G	SNP	ENSG00000256518	ENST00000542477	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-807H22.5	Clone_based_vega_gene	ENSG00000256518				172	0	0	54	11	16.9231
FOLR1	0	genome.wustl.edu	37	11	71906954	71906954	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	71906954	71906954	C	T	SNP	FOLR1	ENST00000312293	human	ensembl	74_37	+1	known	silent	c.507	p.C169	1.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR1	HGNC	ENSG00000110195				194	0	0	74	5	6.32911
RELT	0	genome.wustl.edu	37	11	73106534	73106534	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	73106534	73106534	T	C	SNP	RELT	ENST00000064780	human	ensembl	74_37	+1	known	nonstop	c.1291	p.*431R	0.994	NULL	pfam_TNF_rcpt_RELT,prints_TNFR_19-like	-	no_errors	RELT	HGNC	ENSG00000054967				160	1	0.621118	48	11	18.6441
NEU3	0	genome.wustl.edu	37	11	74717419	74717419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	74717419	74717419	C	T	SNP	NEU3	ENST00000294064	human	ensembl	74_37	+1	known	missense	c.1268	p.T423I	0.000	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU3	HGNC	ENSG00000162139				241	1	0.413223	89	16	15.2381
PRKRIR	0	genome.wustl.edu	37	11	76062779	76062779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	76062779	76062779	C	T	SNP	PRKRIR	ENST00000260045	human	ensembl	74_37	-1	known	missense	c.1415	p.S472N	1.000	superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492				151	0	0	69	14	16.8675
LRRC32	0	genome.wustl.edu	37	11	76372210	76372210	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	76372210	76372210	G	A	SNP	LRRC32	ENST00000260061	human	ensembl	74_37	-1	known	missense	c.427	p.R143W	0.294	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507				94	0	0	29	8	21.6216
CCDC90B	0	genome.wustl.edu	37	11	82989836	82989836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	82989836	82989836	G	A	SNP	CCDC90B	ENST00000529689	human	ensembl	74_37	-1	known	missense	c.257	p.A86V	0.783	pfam_DUF1640	pfam_DUF1640	-	no_errors	CCDC90B	HGNC	ENSG00000137500				100	0	0	84	11	11.5789
TRIM49	0	genome.wustl.edu	37	11	89537259	89537259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	89537259	89537259	G	A	SNP	TRIM49	ENST00000329758	human	ensembl	74_37	-1	known	missense	c.379	p.R127C	0.001	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM49	HGNC	ENSG00000168930				79	0	0	29	12	29.2683
C11orf16	0	genome.wustl.edu	37	11	8953790	8953790	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	8953790	8953790	C	A	SNP	C11orf16	ENST00000326053	human	ensembl	74_37	-1	known	missense	c.66	p.K22N	0.909	NULL	NULL	-	no_errors	C11orf16	HGNC	ENSG00000176029				21	0	0	12	3	20
SLC36A4	0	genome.wustl.edu	37	11	92918965	92918965	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	92918965	92918965	C	A	SNP	SLC36A4	ENST00000326402	human	ensembl	74_37	-1	known	missense	c.71	p.R24M	1.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC36A4	HGNC	ENSG00000180773				71	0	0	45	5	10
HEPHL1	0	genome.wustl.edu	37	11	93796776	93796776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	93796776	93796776	C	T	SNP	HEPHL1	ENST00000315765	human	ensembl	74_37	+1	known	missense	c.518	p.A173V	0.996	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333				126	1	0.787402	55	7	11.2903
NUAK1	0	genome.wustl.edu	37	12	106461214	106461214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	106461214	106461214	G	A	SNP	NUAK1	ENST00000261402	human	ensembl	74_37	-1	known	missense	c.1352	p.P451L	0.112	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590				103	0	0	35	11	23.913
POLR3B	0	genome.wustl.edu	37	12	106786837	106786837	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	106786837	106786837	T	C	SNP	POLR3B	ENST00000228347	human	ensembl	74_37	+1	known	missense	c.752	p.I251T	1.000	pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR3B	HGNC	ENSG00000013503				181	0	0	85	15	15
STYK1	0	genome.wustl.edu	37	12	10782235	10782235	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	10782235	10782235	G	A	SNP	STYK1	ENST00000075503	human	ensembl	74_37	-1	known	nonsense	c.490	p.R164*	0.994	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STYK1	HGNC	ENSG00000060140				110	0	0	36	10	21.7391
SELPLG	0	genome.wustl.edu	37	12	109016933	109016933	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	109016933	109016933	A	G	SNP	SELPLG	ENST00000550948	human	ensembl	74_37	-1	known	missense	c.1151	p.L384P	0.000	NULL	NULL	-	no_errors	SELPLG	HGNC	ENSG00000110876				24	0	0	15	4	21.0526
SSH1	0	genome.wustl.edu	37	12	109192889	109192889	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	109192889	109192889	G	A	SNP	SSH1	ENST00000326495	human	ensembl	74_37	-1	known	silent	c.1236	p.F412	0.653	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112				81	0	0	23	4	14.8148
ACACB	0	genome.wustl.edu	37	12	109704115	109704115	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	109704115	109704115	G	A	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.7325	p.R2442Q	1.000	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				109	0	0	41	7	14.5833
ENSG00000221246	0	genome.wustl.edu	37	12	111070435	111070435	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	111070435	111070435	G	A	SNP	ENSG00000221246	ENST00000408319	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC144522.1	Clone_based_ensembl_gene	ENSG00000221246				67	0	0	36	10	21.7391
MYL2	0	genome.wustl.edu	37	12	111348961	111348961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	111348961	111348961	C	T	SNP	MYL2	ENST00000228841	human	ensembl	74_37	-1	known	missense	c.421	p.A141T	1.000	smart_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL2	HGNC	ENSG00000111245				263	0	0	73	9	10.9756
NAA25	0	genome.wustl.edu	37	12	112485518	112485518	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	112485518	112485518	G	A	SNP	NAA25	ENST00000261745	human	ensembl	74_37	-1	known	nonsense	c.1957	p.R653*	1.000	pfam_N-acetylTrfase_B_cplx_non-cat	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300				417	0	0	160	32	16.6667
NOS1	0	genome.wustl.edu	37	12	117664550	117664550	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	117664550	117664550	G	A	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	silent	c.3642	p.G1214	0.997	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				88	0	0	38	6	13.6364
MLXIP	0	genome.wustl.edu	37	12	122614587	122614587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	122614587	122614587	G	A	SNP	MLXIP	ENST00000319080	human	ensembl	74_37	+1	known	missense	c.838	p.E280K	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIP	HGNC	ENSG00000175727				61	0	0	28	10	26.3158
VPS33A	0	genome.wustl.edu	37	12	122723199	122723199	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	122723199	122723199	G	A	SNP	VPS33A	ENST00000267199	human	ensembl	74_37	-1	known	nonsense	c.1237	p.Q413*	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719				278	0	0	110	12	9.83607
CLIP1	0	genome.wustl.edu	37	12	122845598	122845598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	122845598	122845598	C	T	SNP	CLIP1	ENST00000540338	human	ensembl	74_37	-1	known	missense	c.913	p.A305T	0.995	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779				84	0	0	35	15	30
NCOR2	0	genome.wustl.edu	37	12	124827627	124827627	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	124827627	124827627	G	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	silent	c.4881	p.G1627	0.740	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				85	0	0	19	3	13.6364
PIWIL1	0	genome.wustl.edu	37	12	130855769	130855769	+	Silent	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	130855769	130855769	T	G	SNP	PIWIL1	ENST00000245255	human	ensembl	74_37	+1	known	silent	c.2370	p.S790	0.353	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207				213	0	0	100	22	18.0328
GOLGA3	0	genome.wustl.edu	37	12	133351739	133351739	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	133351739	133351739	G	A	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	silent	c.4131	p.G1377	0.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				118	0	0	51	7	12.069
GRIN2B	0	genome.wustl.edu	37	12	13716277	13716277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	13716277	13716277	G	A	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.3895	p.R1299C	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				213	0	0	99	16	13.913
SMCO3	0	genome.wustl.edu	37	12	14959221	14959221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	14959221	14959221	C	T	SNP	SMCO3	ENST00000316048	human	ensembl	74_37	-1	known	missense	c.394	p.A132T	1.000	NULL	NULL	-	no_errors	SMCO3	HGNC	ENSG00000179256				153	0	0	98	7	6.66667
TMTC1	0	genome.wustl.edu	37	12	29757135	29757135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	29757135	29757135	G	A	SNP	TMTC1	ENST00000256062	human	ensembl	74_37	-1	known	missense	c.902	p.A301V	1.000	NULL	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687				77	0	0	37	4	9.7561
RHNO1	0	genome.wustl.edu	37	12	2997147	2997147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	2997147	2997147	G	A	SNP	RHNO1	ENST00000489288	human	ensembl	74_37	+1	known	missense	c.239	p.R80K	0.005	NULL	NULL	-	no_errors	RHNO1	HGNC	ENSG00000171792				63	0	0	24	10	29.4118
DDX11	0	genome.wustl.edu	37	12	31245812	31245812	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	31245812	31245812	C	T	SNP	DDX11	ENST00000407793	human	ensembl	74_37	+1	known	silent	c.1275	p.Y425	0.999	superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573				112	0	0	41	4	8.88889
BICD1	0	genome.wustl.edu	37	12	32446952	32446952	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	32446952	32446952	A	G	SNP	BICD1	ENST00000281474	human	ensembl	74_37	+1	known	missense	c.451	p.R151G	1.000	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC_like_C_dom	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC_like_C_dom	-	no_errors	BICD1	HGNC	ENSG00000151746				95	0	0	40	6	13.0435
BICD1	0	genome.wustl.edu	37	12	32490545	32490545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	32490545	32490545	G	A	SNP	BICD1	ENST00000281474	human	ensembl	74_37	+1	known	missense	c.2365	p.A789T	1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC_like_C_dom	-	no_errors	BICD1	HGNC	ENSG00000151746				106	0	0	39	8	17.0213
FGD4	0	genome.wustl.edu	37	12	32777996	32777996	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	32777996	32777996	G	T	SNP	FGD4	ENST00000427716	human	ensembl	74_37	+1	known	missense	c.1629	p.E543D	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132				147	0	0	93	11	10.5769
KIF21A	0	genome.wustl.edu	37	12	39756911	39756911	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	39756911	39756911	G	T	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	silent	c.1008	p.L336	0.900	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				114	0	0	88	15	14.5631
PDZRN4	0	genome.wustl.edu	37	12	41966842	41966842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	41966842	41966842	G	A	SNP	PDZRN4	ENST00000402685	human	ensembl	74_37	+1	known	missense	c.2261	p.R754H	1.000	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966				213	0	0	94	16	14.5455
PRICKLE1	0	genome.wustl.edu	37	12	42854270	42854270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	42854270	42854270	G	A	SNP	PRICKLE1	ENST00000345127	human	ensembl	74_37	-1	known	missense	c.1837	p.P613S	0.847	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE1	HGNC	ENSG00000139174				174	0	0	93	16	14.6789
ANO6	0	genome.wustl.edu	37	12	45771877	45771877	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	45771877	45771877	A	G	SNP	ANO6	ENST00000425752	human	ensembl	74_37	+1	known	silent	c.1146	p.A382	0.998	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119				101	0	0	66	13	16.4557
ANO6	0	genome.wustl.edu	37	12	45822989	45822989	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	45822989	45822989	G	T	SNP	ANO6	ENST00000320560	human	ensembl	74_37	+1	known	missense	c.2628	p.K876N	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119				63	0	0	35	7	16.6667
ASB8	0	genome.wustl.edu	37	12	48547247	48547247	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	48547247	48547247	G	A	SNP	ASB8	ENST00000317697	human	ensembl	74_37	-1	known	silent	c.33	p.S11	1.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB8	HGNC	ENSG00000177981				142	0	0	74	13	14.9425
CCNT1	0	genome.wustl.edu	37	12	49086828	49086828	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	49086828	49086828	G	A	SNP	CCNT1	ENST00000261900	human	ensembl	74_37	-1	known	silent	c.2169	p.P723	0.892	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315				49	0	0	19	5	20.8333
CCNT1	0	genome.wustl.edu	37	12	49087188	49087188	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	49087188	49087188	G	T	SNP	CCNT1	ENST00000261900	human	ensembl	74_37	-1	known	silent	c.1809	p.S603	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315				122	0	0	61	5	7.57576
ADCY6	0	genome.wustl.edu	37	12	49176653	49176653	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	49176653	49176653	C	T	SNP	ADCY6	ENST00000307885	human	ensembl	74_37	-1	known	missense	c.565	p.A189T	0.518	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY6	HGNC	ENSG00000174233				80	0	0	21	7	25
KMT2D	0	genome.wustl.edu	37	12	49444688	49444688	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	49444688	49444688	C	T	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	silent	c.2778	p.S926	0.967	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				169	0	0	74	17	18.6813
TROAP	0	genome.wustl.edu	37	12	49724484	49724484	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	49724484	49724484	C	A	SNP	TROAP	ENST00000257909	human	ensembl	74_37	+1	known	missense	c.1856	p.P619H	0.067	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451				113	0	0	62	7	10.1449
TMBIM6	0	genome.wustl.edu	37	12	50146265	50146265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	50146265	50146265	G	A	SNP	TMBIM6	ENST00000423828	human	ensembl	74_37	+1	known	missense	c.163	p.D55N	0.989	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM6	HGNC	ENSG00000139644				159	0	0	59	12	16.9014
KCNA1	0	genome.wustl.edu	37	12	5021217	5021217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	5021217	5021217	G	A	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	missense	c.673	p.E225K	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				120	0	0	65	8	10.9589
AQP5	0	genome.wustl.edu	37	12	50357276	50357276	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	50357276	50357276	T	G	SNP	AQP5	ENST00000293599	human	ensembl	74_37	+1	known	missense	c.365	p.L122R	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_5,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_5,tigrfam_MIP	-	no_errors	AQP5	HGNC	ENSG00000161798				208	0	0	82	18	18
KRT75	0	genome.wustl.edu	37	12	52822136	52822136	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	52822136	52822136	C	G	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1286	p.R429P	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				144	0	0	28	27	49.0909
TENC1	0	genome.wustl.edu	37	12	53453432	53453432	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	53453432	53453432	C	T	SNP	TENC1	ENST00000314276	human	ensembl	74_37	+1	known	silent	c.2037	p.R679	0.006	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077				139	1	0.714286	47	8	14.5455
ESPL1	0	genome.wustl.edu	37	12	53668729	53668729	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	53668729	53668729	A	G	SNP	ESPL1	ENST00000257934	human	ensembl	74_37	+1	known	silent	c.1635	p.P545	0.979	NULL	pfam_Peptidase_C50,superfamily_DsrEFH-like	-	no_errors	ESPL1	HGNC	ENSG00000135476				68	0	0	31	6	16.2162
LRP1	0	genome.wustl.edu	37	12	57592321	57592321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	57592321	57592321	G	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.9544	p.V3182I	0.988	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				44	0	0	15	4	21.0526
VWF	0	genome.wustl.edu	37	12	6120863	6120863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	6120863	6120863	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.5762	p.R1921Q	0.005	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				60	0	0	19	5	20.8333
CHD4	0	genome.wustl.edu	37	12	6703729	6703729	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	6703729	6703729	A	G	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	silent	c.2209	p.L737	0.998	pfam_SNF2_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				143	0	0	48	12	20
LPAR5	0	genome.wustl.edu	37	12	6729440	6729440	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	6729440	6729440	C	T	SNP	LPAR5	ENST00000329858	human	ensembl	74_37	-1	known	silent	c.975	p.T325	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	LPAR5	HGNC	ENSG00000184574				30	0	0	13	3	18.75
FRS2	0	genome.wustl.edu	37	12	69968091	69968091	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	69968091	69968091	C	T	SNP	FRS2	ENST00000299293	human	ensembl	74_37	+1	known	nonsense	c.883	p.R295*	1.000	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS2	HGNC	ENSG00000166225				162	1	0.613497	63	14	18.1818
ENO2	0	genome.wustl.edu	37	12	7030885	7030885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	7030885	7030885	C	T	SNP	ENO2	ENST00000229277	human	ensembl	74_37	+1	known	missense	c.1007	p.A336V	1.000	pfam_Enolase_C,pfam_MeAsp_NH4-lyase_C,pirsf_Enolase,tigrfam_Enolase	pfam_Enolase_C,pfam_Enolase_N,pfam_MeAsp_NH4-lyase_C,pirsf_Enolase,prints_Enolase,tigrfam_Enolase	-	no_errors	ENO2	HGNC	ENSG00000111674				106	0	0	48	12	20
TMTC2	0	genome.wustl.edu	37	12	83250837	83250837	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	83250837	83250837	G	A	SNP	TMTC2	ENST00000321196	human	ensembl	74_37	+1	known	silent	c.132	p.T44	0.006	NULL	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104				252	0	0	106	17	13.8211
FAM90A1	0	genome.wustl.edu	37	12	8374554	8374554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	8374554	8374554	G	A	SNP	FAM90A1	ENST00000307435	human	ensembl	74_37	-1	known	missense	c.1259	p.P420L	0.001	NULL	NULL	-	no_errors	FAM90A1	HGNC	ENSG00000171847				83	0	0	26	6	18.75
SLC6A15	0	genome.wustl.edu	37	12	85264301	85264301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	85264301	85264301	G	A	SNP	SLC6A15	ENST00000266682	human	ensembl	74_37	-1	known	missense	c.1451	p.T484M	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A15	HGNC	ENSG00000072041				201	0	0	58	14	19.4444
MFAP5	0	genome.wustl.edu	37	12	8803134	8803134	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	8803134	8803134	G	A	SNP	MFAP5	ENST00000359478	human	ensembl	74_37	-1	known	missense	c.299	p.P100L	0.973	pfam_MAGP	pfam_MAGP	-	no_errors	MFAP5	HGNC	ENSG00000197614				85	0	0	53	9	14.5161
CEP290	0	genome.wustl.edu	37	12	88478558	88478558	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	88478558	88478558	A	G	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	silent	c.4515	p.N1505	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				62	0	0	23	4	14.8148
A2ML1	0	genome.wustl.edu	37	12	8988128	8988128	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	8988128	8988128	A	C	SNP	A2ML1	ENST00000299698	human	ensembl	74_37	+1	known	missense	c.509	p.Q170P	0.995	pfam_A2M_N	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535				187	0	0	59	5	7.8125
ATP2B1	0	genome.wustl.edu	37	12	90028814	90028814	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	90028814	90028814	T	C	SNP	ATP2B1	ENST00000261173	human	ensembl	74_37	-1	known	silent	c.621	p.V207	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961				152	0	0	86	12	12.2449
PLXNC1	0	genome.wustl.edu	37	12	94648663	94648663	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	94648663	94648663	C	T	SNP	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	silent	c.2982	p.D994	0.042	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				40	0	0	12	3	20
TMPO	0	genome.wustl.edu	37	12	98927810	98927810	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	98927810	98927810	C	A	SNP	TMPO	ENST00000266732	human	ensembl	74_37	+1	known	missense	c.1775	p.A592D	0.998	pfam_LAP2alpha	pfam_LAP2alpha,pfam_LEM-like_dom,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom,pfscan_LEM-like_dom	-	no_errors	TMPO	HGNC	ENSG00000120802				52	0	0	40	4	9.09091
APAF1	0	genome.wustl.edu	37	12	99102474	99102474	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	99102474	99102474	C	T	SNP	APAF1	ENST00000551964	human	ensembl	74_37	+1	known	missense	c.2833	p.R945C	0.062	superfamily_WD40_repeat_dom,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868				44	0	0	18	5	21.7391
FAM155A	0	genome.wustl.edu	37	13	108518597	108518597	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	108518597	108518597	G	A	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	silent	c.348	p.A116	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				30	0	0	10	4	28.5714
PROZ	0	genome.wustl.edu	37	13	113818958	113818958	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	113818958	113818958	G	A	SNP	PROZ	ENST00000375547	human	ensembl	74_37	+1	known	missense	c.505	p.D169N	0.913	pirsf_Pept_S1A_FX	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Peptidase_S1,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	PROZ	HGNC	ENSG00000126231				51	0	0	24	5	17.2414
TUBA3C	0	genome.wustl.edu	37	13	19751314	19751314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	19751314	19751314	G	A	SNP	TUBA3C	ENST00000400113	human	ensembl	74_37	-1	known	missense	c.809	p.A270V	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033				290	0	0	123	11	8.20896
MTUS2	0	genome.wustl.edu	37	13	29600969	29600969	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	29600969	29600969	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.2164	p.G722R	0.966	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				95	0	0	32	15	31.9149
VWA8	0	genome.wustl.edu	37	13	42144798	42144798	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	42144798	42144798	C	T	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	silent	c.5415	p.T1805	0.001	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				109	0	0	51	9	15
EPSTI1	0	genome.wustl.edu	37	13	43544769	43544769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	43544769	43544769	G	A	SNP	EPSTI1	ENST00000313640	human	ensembl	74_37	-1	known	missense	c.226	p.R76W	0.892	NULL	NULL	-	no_errors	EPSTI1	HGNC	ENSG00000133106				219	0	0	64	21	24.7059
PCDH17	0	genome.wustl.edu	37	13	58207391	58207391	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	58207391	58207391	C	T	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.711	p.N237	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				105	0	0	40	17	29.8246
TBC1D4	0	genome.wustl.edu	37	13	76055542	76055542	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	76055542	76055542	T	C	SNP	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	missense	c.362	p.H121R	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				221	0	0	62	6	8.82353
SLITRK5	0	genome.wustl.edu	37	13	88328684	88328684	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	88328684	88328684	G	A	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	silent	c.1041	p.R347	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				186	0	0	59	42	41.5842
ABCC4	0	genome.wustl.edu	37	13	95726498	95726498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	95726498	95726498	C	T	SNP	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	missense	c.2887	p.V963I	0.235	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				61	0	0	19	5	20.8333
IPO5	0	genome.wustl.edu	37	13	98652834	98652834	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	98652834	98652834	G	T	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.1097	p.C366F	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				149	0	0	46	29	38.6667
KIF26A	0	genome.wustl.edu	37	14	104642480	104642480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	104642480	104642480	G	A	SNP	KIF26A	ENST00000423312	human	ensembl	74_37	+1	known	missense	c.3355	p.V1119I	0.970	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735				15	0	0	6	3	33.3333
AHNAK2	0	genome.wustl.edu	37	14	105407181	105407181	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	105407181	105407181	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.14607	p.K4869	0.898	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				56	0	0	24	6	20
AHNAK2	0	genome.wustl.edu	37	14	105413931	105413931	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	105413931	105413931	C	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.7857	p.Q2619H	0.001	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				474	0	0	173	44	20.2765
MTA1	0	genome.wustl.edu	37	14	105936409	105936409	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	105936409	105936409	C	T	SNP	MTA1	ENST00000331320	human	ensembl	74_37	+1	known	missense	c.2005	p.R669C	1.000	NULL	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA1	HGNC	ENSG00000182979				144	0	0	18	14	43.75
C14orf80	0	genome.wustl.edu	37	14	105958492	105958492	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	105958492	105958492	C	T	SNP	C14orf80	ENST00000548920	human	ensembl	74_37	+1	known	nonsense	c.217	p.R73*	0.434	NULL	NULL	-	no_errors	C14orf80	HGNC	ENSG00000185347				55	0	0	17	5	22.7273
OR4Q3	0	genome.wustl.edu	37	14	20215900	20215900	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	20215900	20215900	T	G	SNP	OR4Q3	ENST00000331723	human	ensembl	74_37	+1	known	missense	c.314	p.L105R	0.805	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652				58	0	0	32	6	15.7895
OR4K2	0	genome.wustl.edu	37	14	20344817	20344817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	20344817	20344817	C	T	SNP	OR4K2	ENST00000298642	human	ensembl	74_37	+1	known	missense	c.391	p.H131Y	0.089	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K2	HGNC	ENSG00000165762				244	0	0	119	26	17.931
ACIN1	0	genome.wustl.edu	37	14	23530554	23530554	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	23530554	23530554	C	A	SNP	ACIN1	ENST00000262710	human	ensembl	74_37	-1	known	missense	c.3551	p.R1184L	1.000	NULL	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	ACIN1	HGNC	ENSG00000100813				212	0	0	90	20	18.1818
PCK2	0	genome.wustl.edu	37	14	24567797	24567797	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	24567797	24567797	A	G	SNP	PCK2	ENST00000216780	human	ensembl	74_37	+1	known	missense	c.574	p.T192A	1.000	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889				82	0	0	28	2	6.66667
CIDEB	0	genome.wustl.edu	37	14	24775286	24775286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	24775286	24775286	C	T	SNP	CIDEB	ENST00000258807	human	ensembl	74_37	-1	known	missense	c.394	p.A132T	1.000	NULL	pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	CIDEB	HGNC	ENSG00000136305				159	0	0	73	7	8.75
CTAGE5	0	genome.wustl.edu	37	14	39815175	39815175	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	39815175	39815175	A	T	SNP	CTAGE5	ENST00000396158	human	ensembl	74_37	+1	known	missense	c.1914	p.R638S	0.979	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527				146	0	0	59	18	23.3766
MIS18BP1	0	genome.wustl.edu	37	14	45711523	45711523	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	45711523	45711523	T	C	SNP	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	missense	c.857	p.E286G	0.000	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				139	0	0	67	15	18.2927
SOS2	0	genome.wustl.edu	37	14	50666416	50666416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	50666416	50666416	G	A	SNP	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	missense	c.503	p.A168V	1.000	pfam_Histone_core_D,superfamily_Histone-fold	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				83	0	0	42	8	16
PTGDR	0	genome.wustl.edu	37	14	52735102	52735102	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	52735102	52735102	G	A	SNP	PTGDR	ENST00000306051	human	ensembl	74_37	+1	known	silent	c.570	p.E190	0.853	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt,prints_Prostanoid_rcpt	-	no_errors	PTGDR	HGNC	ENSG00000168229				170	0	0	64	8	11.1111
PTGER2	0	genome.wustl.edu	37	14	52781549	52781549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	52781549	52781549	C	T	SNP	PTGER2	ENST00000245457	human	ensembl	74_37	+1	known	missense	c.283	p.R95W	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP2_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTGER2	HGNC	ENSG00000125384				81	0	0	41	6	12.766
DDHD1	0	genome.wustl.edu	37	14	53539354	53539354	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	53539354	53539354	C	A	SNP	DDHD1	ENST00000323669	human	ensembl	74_37	-1	known	missense	c.1464	p.M488I	1.000	NULL	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523				55	0	0	34	6	15
JKAMP	0	genome.wustl.edu	37	14	59954419	59954419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	59954419	59954419	G	A	SNP	JKAMP	ENST00000356057	human	ensembl	74_37	+1	known	missense	c.148	p.A50T	0.979	pfam_DUF766	pfam_DUF766	-	no_errors	JKAMP	HGNC	ENSG00000050130				313	0	0	144	27	15.7895
SYNE2	0	genome.wustl.edu	37	14	64632037	64632037	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	64632037	64632037	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.16514	p.R5505Q	0.001	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				120	0	0	51	11	17.7419
GALNT16	0	genome.wustl.edu	37	14	69798192	69798192	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	69798192	69798192	C	T	SNP	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	silent	c.702	p.R234	0.004	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626				216	0	0	134	28	17.284
C14orf169	0	genome.wustl.edu	37	14	73959112	73959112	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	73959112	73959112	C	T	SNP	C14orf169	ENST00000531973	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	C14orf169	HGNC	ENSG00000255242				67	0	0	40	10	20
LTBP2	0	genome.wustl.edu	37	14	74969585	74969585	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	74969585	74969585	G	A	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	silent	c.4941	p.A1647	0.790	superfamily_TB_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				167	0	0	61	11	15.2778
LTBP2	0	genome.wustl.edu	37	14	74995322	74995322	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	74995322	74995322	G	A	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	silent	c.2232	p.A744	0.008	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				129	0	0	67	8	10.6667
AREL1	0	genome.wustl.edu	37	14	75130503	75130503	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	75130503	75130503	T	C	SNP	AREL1	ENST00000356357	human	ensembl	74_37	-1	known	missense	c.2392	p.T798A	0.998	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Filamin/ABP280_repeat-like,superfamily_HECT,superfamily_Ig_E-set,smart_HECT,pfscan_Filamin/ABP280_repeat-like,pfscan_HECT	-	no_errors	AREL1	HGNC	ENSG00000119682				297	0	0	99	15	13.1579
TMEM63C	0	genome.wustl.edu	37	14	77706903	77706903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	77706903	77706903	G	A	SNP	TMEM63C	ENST00000298351	human	ensembl	74_37	+1	known	missense	c.1016	p.R339Q	1.000	NULL	pfam_DUF221	-	no_errors	TMEM63C	HGNC	ENSG00000165548				53	0	0	17	3	15
ISM2	0	genome.wustl.edu	37	14	77948722	77948722	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	77948722	77948722	A	G	SNP	ISM2	ENST00000342219	human	ensembl	74_37	-1	known	missense	c.916	p.W306R	0.434	NULL	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM2	HGNC	ENSG00000100593				117	0	0	39	12	23.5294
FLRT2	0	genome.wustl.edu	37	14	86089442	86089442	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	86089442	86089442	C	T	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	silent	c.1584	p.S528	1.000	NULL	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				253	0	0	94	10	9.61538
CCDC88C	0	genome.wustl.edu	37	14	91760652	91760652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	91760652	91760652	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.3977	p.R1326H	0.993	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				69	0	0	31	12	27.907
SLC24A4	0	genome.wustl.edu	37	14	92790234	92790234	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	92790234	92790234	G	A	SNP	SLC24A4	ENST00000532405	human	ensembl	74_37	+1	known	silent	c.60	p.P20	0.999	NULL	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A4	HGNC	ENSG00000140090				51	0	0	9	4	30.7692
SERPINA6	0	genome.wustl.edu	37	14	94770841	94770841	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	94770841	94770841	G	A	SNP	SERPINA6	ENST00000341584	human	ensembl	74_37	-1	known	missense	c.1132	p.R378C	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA6	HGNC	ENSG00000170099				132	0	0	42	10	19.2308
SERPINA6	0	genome.wustl.edu	37	14	94772522	94772522	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	94772522	94772522	G	T	SNP	SERPINA6	ENST00000341584	human	ensembl	74_37	-1	known	silent	c.918	p.I306	0.213	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA6	HGNC	ENSG00000170099				96	0	0	40	9	18.3673
DICER1	0	genome.wustl.edu	37	14	95569709	95569709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	95569709	95569709	G	A	SNP	DICER1	ENST00000343455	human	ensembl	74_37	-1	known	missense	c.4024	p.R1342C	1.000	pfam_RNase_III_dom,superfamily_RNase_III_dom,smart_RNase_III_dom,pfscan_RNase_III_dom	pfam_RNase_III_dom,pfam_PAZ_dom,pfam_Dicer_dimerisation_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_P-loop_NTPase,superfamily_PAZ_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_PAZ_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697				166	0	0	70	16	18.6047
HERC2P3	0	genome.wustl.edu	37	15	20643871	20643871	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	20643871	20643871	C	T	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				208	0	0	120	8	6.25
OR4M2	0	genome.wustl.edu	37	15	22369389	22369389	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	22369389	22369389	G	T	SNP	OR4M2	ENST00000332663	human	ensembl	74_37	+1	putative	missense	c.814	p.V272L	0.545	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974				270	0	0	149	14	8.58896
FAN1	0	genome.wustl.edu	37	15	31202890	31202890	+	Silent	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	31202890	31202890	C	A	SNP	FAN1	ENST00000362065	human	ensembl	74_37	+1	known	silent	c.1449	p.T483	0.996	NULL	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690				157	0	0	59	10	14.4928
TRPM1	0	genome.wustl.edu	37	15	31332390	31332390	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	31332390	31332390	G	T	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	silent	c.2298	p.T766	0.997	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				170	1	0.584795	59	4	6.34921
RYR3	0	genome.wustl.edu	37	15	34030749	34030749	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	34030749	34030749	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	silent	c.7614	p.T2538	0.001	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				124	0	0	42	8	16
IVD	0	genome.wustl.edu	37	15	40708280	40708280	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	40708280	40708280	A	G	SNP	IVD	ENST00000487418	human	ensembl	74_37	+1	known	missense	c.973	p.M325V	1.000	pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	IVD	HGNC	ENSG00000128928				77	0	0	17	8	32
CASC5	0	genome.wustl.edu	37	15	40912959	40912959	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	40912959	40912959	T	A	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	nonsense	c.575	p.L192*	0.002	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				134	0	0	60	13	17.8082
CASC5	0	genome.wustl.edu	37	15	40914465	40914465	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	40914465	40914465	C	A	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	missense	c.2081	p.T694K	0.004	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				155	0	0	67	12	15.1899
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42138489	42138489	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	42138489	42138489	G	T	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	missense	c.2382	p.W794C	0.878	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				221	0	0	78	17	17.8947
EHD4	0	genome.wustl.edu	37	15	42211660	42211660	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	42211660	42211660	G	A	SNP	EHD4	ENST00000220325	human	ensembl	74_37	-1	known	silent	c.672	p.A224	0.224	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD4	HGNC	ENSG00000103966				75	0	0	43	6	12.2449
ZNF106	0	genome.wustl.edu	37	15	42743852	42743852	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	42743852	42743852	A	G	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	silent	c.549	p.G183	0.995	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				181	0	0	80	14	14.8936
MAP1A	0	genome.wustl.edu	37	15	43820988	43820988	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	43820988	43820988	T	C	SNP	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	silent	c.7317	p.T2439	0.996	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				76	0	0	37	14	27.451
GLDN	0	genome.wustl.edu	37	15	51696856	51696856	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	51696856	51696856	G	T	SNP	GLDN	ENST00000335449	human	ensembl	74_37	+1	known	missense	c.1561	p.A521S	0.668	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Collagen,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	GLDN	HGNC	ENSG00000186417				245	0	0	120	21	14.8936
DMXL2	0	genome.wustl.edu	37	15	51766637	51766637	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	51766637	51766637	C	A	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.7117	p.A2373S	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				117	0	0	29	24	45.283
TMOD3	0	genome.wustl.edu	37	15	52161500	52161500	+	Silent	SNP	A	A	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	52161500	52161500	A	T	SNP	TMOD3	ENST00000308580	human	ensembl	74_37	+1	known	silent	c.213	p.S71	0.004	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	TMOD3	HGNC	ENSG00000138594				196	0	0	86	12	12.2449
ONECUT1	0	genome.wustl.edu	37	15	53049924	53049924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	53049924	53049924	C	T	SNP	ONECUT1	ENST00000305901	human	ensembl	74_37	-1	known	missense	c.1226	p.R409H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	ONECUT1	HGNC	ENSG00000169856				234	0	0	117	20	14.5985
ONECUT1	0	genome.wustl.edu	37	15	53049957	53049957	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	53049957	53049957	C	T	SNP	ONECUT1	ENST00000305901	human	ensembl	74_37	-1	known	missense	c.1193	p.R398Q	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	ONECUT1	HGNC	ENSG00000169856				285	0	0	141	21	12.963
PRTG	0	genome.wustl.edu	37	15	55912281	55912281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	55912281	55912281	G	A	SNP	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	missense	c.3382	p.R1128W	0.999	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450				144	0	0	55	12	17.9104
FOXB1	0	genome.wustl.edu	37	15	60297516	60297516	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	60297516	60297516	G	A	SNP	FOXB1	ENST00000396057	human	ensembl	74_37	+1	known	silent	c.354	p.A118	0.997	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXB1	HGNC	ENSG00000171956				46	0	0	19	5	20.8333
ANXA2	0	genome.wustl.edu	37	15	60641281	60641281	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	60641281	60641281	T	A	SNP	ANXA2	ENST00000332680	human	ensembl	74_37	-1	known	missense	c.1007	p.Y336F	1.000	pfam_Annexin_repeat,smart_Annexin_repeat	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinII,prints_AnnexinV	-	no_errors	ANXA2	HGNC	ENSG00000182718				80	0	0	42	5	10.6383
HERC1	0	genome.wustl.edu	37	15	63984660	63984660	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	63984660	63984660	G	T	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.5780	p.P1927Q	1.000	superfamily_ARM-type_fold	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				124	0	0	45	6	11.7647
DPP8	0	genome.wustl.edu	37	15	65793059	65793059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	65793059	65793059	C	T	SNP	DPP8	ENST00000341861	human	ensembl	74_37	-1	known	missense	c.479	p.R160H	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP8	HGNC	ENSG00000074603				226	0	0	133	23	14.7436
NOX5	0	genome.wustl.edu	37	15	69347808	69347808	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	69347808	69347808	C	T	SNP	NOX5	ENST00000388866	human	ensembl	74_37	+1	known	missense	c.2134	p.R712C	0.367	pfam_Fe_red_NAD-bd_6	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NOX5	HGNC	ENSG00000255346				77	0	0	35	5	12.5
LOXL1	0	genome.wustl.edu	37	15	74219771	74219771	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	74219771	74219771	C	G	SNP	LOXL1	ENST00000261921	human	ensembl	74_37	+1	known	missense	c.647	p.A216G	0.706	NULL	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	-	no_errors	LOXL1	HGNC	ENSG00000129038				28	0	0	1	4	80
SEMA7A	0	genome.wustl.edu	37	15	74702973	74702973	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	74702973	74702973	C	A	SNP	SEMA7A	ENST00000261918	human	ensembl	74_37	-1	known	missense	c.1993	p.V665F	0.925	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA7A	HGNC	ENSG00000138623				210	0	0	63	12	16
C15orf37	0	genome.wustl.edu	37	15	80215370	80215370	+	Silent	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	80215370	80215370	C	A	SNP	C15orf37	ENST00000560255	human	ensembl	74_37	+1	known	silent	c.255	p.A85	0.006	NULL	NULL	-	no_errors	C15orf37	HGNC	ENSG00000259642				60	0	0	17	6	26.087
ADAMTSL3	0	genome.wustl.edu	37	15	84651707	84651707	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	84651707	84651707	C	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	silent	c.3327	p.T1109	0.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218				130	0	0	55	7	11.2903
POLG	0	genome.wustl.edu	37	15	89864210	89864210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	89864210	89864210	C	T	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	missense	c.2768	p.G923D	1.000	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				163	0	0	71	13	15.4762
ENSG00000221309	0	genome.wustl.edu	37	15	90838291	90838291	+	RNA	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	90838291	90838291	C	A	SNP	ENSG00000221309	ENST00000408382	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.049	-	-	-	no_errors	AC091167.1	Clone_based_ensembl_gene	ENSG00000221309				60	0	0	24	4	14.2857
FES	0	genome.wustl.edu	37	15	91432867	91432867	+	Splice_Site	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	91432867	91432867	G	A	SNP	FES	ENST00000328850	human	ensembl	74_37	+1	known	splice_site	c.926+1	e6+1	1.000	-	-	-	no_errors	FES	HGNC	ENSG00000182511				213	0	0	79	23	22.549
CACNA1H	0	genome.wustl.edu	37	16	1257285	1257285	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	1257285	1257285	A	G	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.2918	p.Q973R	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				21	0	0	13	5	27.7778
TPSD1	0	genome.wustl.edu	37	16	1306523	1306523	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	1306523	1306523	G	T	SNP	TPSD1	ENST00000211076	human	ensembl	74_37	+1	known	missense	c.89	p.G30V	0.014	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	TPSD1	HGNC	ENSG00000095917				140	0	0	45	6	11.7647
TPSD1	0	genome.wustl.edu	37	16	1306674	1306674	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	1306674	1306674	G	A	SNP	TPSD1	ENST00000211076	human	ensembl	74_37	+1	known	silent	c.240	p.A80	0.442	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	TPSD1	HGNC	ENSG00000095917				116	0	0	40	8	16.6667
MKL2	0	genome.wustl.edu	37	16	14341277	14341277	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	14341277	14341277	G	A	SNP	MKL2	ENST00000341243	human	ensembl	74_37	+1	known	silent	c.2127	p.T709	0.073	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL2	HGNC	ENSG00000186260				47	0	0	18	5	21.7391
NOMO1	0	genome.wustl.edu	37	16	14932348	14932348	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	14932348	14932348	G	T	SNP	NOMO1	ENST00000287667	human	ensembl	74_37	+1	known	missense	c.250	p.D84Y	1.000	superfamily_Collagen-bd_Cna_B-typ_dom	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512				246	0	0	124	25	16.7785
IFT140	0	genome.wustl.edu	37	16	1616233	1616233	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	1616233	1616233	G	A	SNP	IFT140	ENST00000426508	human	ensembl	74_37	-1	known	silent	c.1830	p.T610	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535				299	0	0	115	30	20.6897
IGFALS	0	genome.wustl.edu	37	16	1841073	1841073	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	1841073	1841073	A	G	SNP	IGFALS	ENST00000415638	human	ensembl	74_37	-1	known	missense	c.1460	p.L487P	0.998	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	IGFALS	HGNC	ENSG00000099769				51	0	0	15	10	40
NTHL1	0	genome.wustl.edu	37	16	2090230	2090230	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	2090230	2090230	G	A	SNP	NTHL1	ENST00000219066	human	ensembl	74_37	-1	known	missense	c.719	p.T240M	1.000	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,smart_HhH-GPD_domain	pfam_HhH-GPD_domain,pfam_HhH_motif,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	NTHL1	HGNC	ENSG00000065057				254	0	0	100	7	6.54206
TSC2	0	genome.wustl.edu	37	16	2124276	2124276	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	2124276	2124276	T	C	SNP	TSC2	ENST00000219476	human	ensembl	74_37	+1	known	missense	c.2431	p.C811R	1.000	pfam_Tuberin-type_domain	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom,prints_Tuberin	-	no_errors	TSC2	HGNC	ENSG00000103197				110	0	0	36	8	18.1818
CRYM	0	genome.wustl.edu	37	16	21278978	21278978	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	21278978	21278978	C	T	SNP	CRYM	ENST00000219599	human	ensembl	74_37	-1	known	silent	c.570	p.S190	0.003	pfam_ODC_Mu_crystall,pfam_Shikm_DH/Glu-tRNA_Rdtase,pfam_6PGDH_NADP-bd	pfam_ODC_Mu_crystall,pfam_Shikm_DH/Glu-tRNA_Rdtase,pfam_6PGDH_NADP-bd	-	no_errors	CRYM	HGNC	ENSG00000103316				127	0	0	51	6	10.5263
PKD1	0	genome.wustl.edu	37	16	2159842	2159842	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	2159842	2159842	G	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.5326	p.L1776M	0.002	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				78	0	0	28	4	12.5
PKD1	0	genome.wustl.edu	37	16	2162823	2162823	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	2162823	2162823	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.3127	p.V1043M	0.982	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				69	0	0	32	6	15.7895
CASKIN1	0	genome.wustl.edu	37	16	2231518	2231518	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	2231518	2231518	G	T	SNP	CASKIN1	ENST00000343516	human	ensembl	74_37	-1	known	silent	c.1851	p.P617	0.994	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971				30	0	0	13	3	18.75
HS3ST2	0	genome.wustl.edu	37	16	22826339	22826339	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	22826339	22826339	A	G	SNP	HS3ST2	ENST00000261374	human	ensembl	74_37	+1	known	silent	c.408	p.V136	0.997	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST2	HGNC	ENSG00000122254				83	0	0	23	4	14.8148
E4F1	0	genome.wustl.edu	37	16	2285285	2285285	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	2285285	2285285	C	T	SNP	E4F1	ENST00000301727	human	ensembl	74_37	+1	known	silent	c.2067	p.I689	0.302	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967				171	0	0	59	13	18.0556
EARS2	0	genome.wustl.edu	37	16	23544081	23544081	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	23544081	23544081	G	T	SNP	EARS2	ENST00000449606	human	ensembl	74_37	-1	known	missense	c.964	p.Q322K	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Glu-tRNA-ligase_bac/mito	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,superfamily_aa-tRNA-synth_I_codon-bd,prints_Glu/Gln-tRNA-synth,tigrfam_Glu-tRNA-ligase_bac/mito	-	no_errors	EARS2	HGNC	ENSG00000103356				37	0	0	21	3	12.5
ARHGAP17	0	genome.wustl.edu	37	16	24950837	24950837	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	24950837	24950837	C	T	SNP	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	silent	c.1572	p.Q524	1.000	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				27	0	0	9	3	25
GTF3C1	0	genome.wustl.edu	37	16	27497443	27497443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	27497443	27497443	G	A	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.3733	p.R1245C	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				410	0	0	166	31	15.736
ZNF48	0	genome.wustl.edu	37	16	30410362	30410362	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	30410362	30410362	G	A	SNP	ZNF48	ENST00000320159	human	ensembl	74_37	+1	known	silent	c.1791	p.T597	0.409	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035				186	0	0	60	13	17.8082
ZNF629	0	genome.wustl.edu	37	16	30794106	30794106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	30794106	30794106	C	T	SNP	ZNF629	ENST00000262525	human	ensembl	74_37	-1	known	missense	c.1543	p.V515M	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870				110	1	0.900901	41	6	12.766
ZNF205	0	genome.wustl.edu	37	16	3170202	3170202	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	3170202	3170202	G	A	SNP	ZNF205	ENST00000219091	human	ensembl	74_37	+1	known	missense	c.1541	p.S514N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF205	HGNC	ENSG00000122386				85	0	0	30	12	28.5714
ZNF213	0	genome.wustl.edu	37	16	3187610	3187610	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	3187610	3187610	C	T	SNP	ZNF213	ENST00000396878	human	ensembl	74_37	+1	known	missense	c.329	p.P110L	0.163	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF213	HGNC	ENSG00000085644				92	0	0	26	3	10.3448
ARHGDIG	0	genome.wustl.edu	37	16	332056	332056	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	332056	332056	G	A	SNP	ARHGDIG	ENST00000219409	human	ensembl	74_37	+1	known	silent	c.285	p.R95	0.350	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	-	no_errors	ARHGDIG	HGNC	ENSG00000242173				219	0	0	73	8	9.87654
LOC283914	0	genome.wustl.edu	37	16	34624132	34624132	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	34624132	34624132	C	T	SNP	LOC283914	ENST00000569242	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-488I20.3	Clone_based_vega_gene	ENSG00000259841				9	0	0	3	2	40
TRAP1	0	genome.wustl.edu	37	16	3740886	3740886	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	3740886	3740886	G	A	SNP	TRAP1	ENST00000246957	human	ensembl	74_37	-1	known	silent	c.189	p.T63	0.049	NULL	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602				81	0	0	45	11	19.6429
CREBBP	0	genome.wustl.edu	37	16	3790494	3790494	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	3790494	3790494	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.4039	p.R1347W	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				93	0	0	53	9	14.5161
CREBBP	0	genome.wustl.edu	37	16	3823777	3823777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	3823777	3823777	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.2438	p.P813L	0.994	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				101	0	0	41	11	21.1538
ZNF423	0	genome.wustl.edu	37	16	49764857	49764857	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	49764857	49764857	G	A	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	silent	c.102	p.C34	0.897	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				367	1	0.271739	138	26	15.8537
PAPD5	0	genome.wustl.edu	37	16	50263298	50263298	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	50263298	50263298	C	T	SNP	PAPD5	ENST00000573002	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	PAPD5	HGNC	ENSG00000121274				36	0	0	21	4	16
CYLD	0	genome.wustl.edu	37	16	50813710	50813710	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	50813710	50813710	A	G	SNP	CYLD	ENST00000311559	human	ensembl	74_37	+1	known	missense	c.1273	p.K425E	0.970	NULL	pfam_CAP-Gly_domain,pfam_Peptidase_C19/C67,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19/C67	-	no_errors	CYLD	HGNC	ENSG00000083799				290	1	0.343643	121	31	20.3947
CHD9	0	genome.wustl.edu	37	16	53276823	53276823	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	53276823	53276823	T	A	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	nonsense	c.2949	p.C983*	1.000	pfam_SNF2_N,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				295	0	0	115	23	16.6667
NUDT21	0	genome.wustl.edu	37	16	56485037	56485037	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	56485037	56485037	C	T	SNP	NUDT21	ENST00000300291	human	ensembl	74_37	-1	known	silent	c.78	p.Q26	1.000	pirsf_Cleav_polyA_spec_factor_su5	superfamily_NUDIX_hydrolase_dom-like,pirsf_Cleav_polyA_spec_factor_su5	-	no_errors	NUDT21	HGNC	ENSG00000167005				307	0	0	92	18	16.3636
NUP93	0	genome.wustl.edu	37	16	56864565	56864565	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	56864565	56864565	G	A	SNP	NUP93	ENST00000308159	human	ensembl	74_37	+1	known	nonsense	c.1053	p.W351*	1.000	pfam_Nucleoporin_int_Nup93/Nic96	pfam_Nucleoporin_int_Nup93/Nic96	-	no_errors	NUP93	HGNC	ENSG00000102900				129	0	0	55	13	19.1176
SLC12A3	0	genome.wustl.edu	37	16	56906652	56906652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	56906652	56906652	C	T	SNP	SLC12A3	ENST00000438926	human	ensembl	74_37	+1	known	missense	c.1049	p.S350L	0.989	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915				133	0	0	47	11	18.9655
CCL22	0	genome.wustl.edu	37	16	57394460	57394460	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	57394460	57394460	G	T	SNP	CCL22	ENST00000219235	human	ensembl	74_37	+1	known	missense	c.185	p.R62M	0.701	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL22	HGNC	ENSG00000102962				124	0	0	36	13	26.5306
KATNB1	0	genome.wustl.edu	37	16	57789377	57789377	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	57789377	57789377	C	T	SNP	KATNB1	ENST00000379661	human	ensembl	74_37	+1	known	missense	c.1537	p.R513W	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KATNB1	HGNC	ENSG00000140854				202	0	0	67	9	11.8421
TEPP	0	genome.wustl.edu	37	16	58019155	58019155	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	58019155	58019155	T	C	SNP	TEPP	ENST00000290871	human	ensembl	74_37	+1	known	missense	c.671	p.V224A	0.847	NULL	NULL	-	no_errors	TEPP	HGNC	ENSG00000159648				26	0	0	15	3	16.6667
FBXL8	0	genome.wustl.edu	37	16	67197644	67197644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	67197644	67197644	C	T	SNP	FBXL8	ENST00000258200	human	ensembl	74_37	+1	known	missense	c.1046	p.A349V	0.743	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL8	HGNC	ENSG00000135722				41	0	0	21	7	25
ACD	0	genome.wustl.edu	37	16	67691945	67691945	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	67691945	67691945	G	A	SNP	ACD	ENST00000393919	human	ensembl	74_37	-1	known	missense	c.1408	p.P470S	0.013	NULL	NULL	-	no_errors	ACD	HGNC	ENSG00000102977				106	0	0	36	7	16.2791
ENKD1	0	genome.wustl.edu	37	16	67699037	67699037	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	67699037	67699037	C	T	SNP	ENKD1	ENST00000243878	human	ensembl	74_37	-1	known	silent	c.315	p.L105	0.493	NULL	NULL	-	no_errors	ENKD1	HGNC	ENSG00000124074				502	0	0	180	28	13.4615
C16orf86	0	genome.wustl.edu	37	16	67701280	67701280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	67701280	67701280	G	A	SNP	C16orf86	ENST00000403458	human	ensembl	74_37	+1	known	missense	c.184	p.A62T	0.000	NULL	NULL	-	no_errors	C16orf86	HGNC	ENSG00000159761				65	0	0	17	9	34.6154
ENSG00000263126	0	genome.wustl.edu	37	16	67918083	67918083	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	67918083	67918083	G	A	SNP	ENSG00000263126	ENST00000572067	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.964	-	-	-	no_errors	CTC-479C5.10	Clone_based_vega_gene	ENSG00000263126				19	0	0	9	3	25
ESRP2	0	genome.wustl.edu	37	16	68265946	68265946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	68265946	68265946	C	T	SNP	ESRP2	ENST00000565858	human	ensembl	74_37	-1	known	missense	c.1088	p.R363Q	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067				87	0	0	30	5	14.2857
WFIKKN1	0	genome.wustl.edu	37	16	682785	682785	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	682785	682785	C	T	SNP	WFIKKN1	ENST00000319070	human	ensembl	74_37	+1	known	silent	c.375	p.S125	1.000	pfam_Kazal_dom	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN1	HGNC	ENSG00000127578				72	0	0	27	5	15.625
SNTB2	0	genome.wustl.edu	37	16	69334794	69334794	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	69334794	69334794	G	A	SNP	SNTB2	ENST00000336278	human	ensembl	74_37	+1	known	silent	c.1590	p.S530	0.146	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB2	HGNC	ENSG00000168807				86	0	0	40	11	21.5686
SF3B3	0	genome.wustl.edu	37	16	70563087	70563087	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	70563087	70563087	C	G	SNP	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	missense	c.382	p.R128G	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				119	0	0	50	18	26.4706
AP1G1	0	genome.wustl.edu	37	16	71779115	71779115	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	71779115	71779115	G	A	SNP	AP1G1	ENST00000433195	human	ensembl	74_37	-1	known	missense	c.2000	p.A667V	1.000	pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G1	HGNC	ENSG00000166747				81	0	0	45	10	18.1818
ATMIN	0	genome.wustl.edu	37	16	81078429	81078429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	81078429	81078429	G	A	SNP	ATMIN	ENST00000299575	human	ensembl	74_37	+1	known	missense	c.2326	p.G776R	1.000	NULL	smart_Znf_C2H2-like	-	no_errors	ATMIN	HGNC	ENSG00000166454				143	0	0	65	24	26.9663
CDH13	0	genome.wustl.edu	37	16	83378583	83378583	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	83378583	83378583	C	T	SNP	CDH13	ENST00000566620	human	ensembl	74_37	+1	known	silent	c.753	p.I251	0.023	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945				171	0	0	72	11	13.253
KLHL36	0	genome.wustl.edu	37	16	84684525	84684525	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	84684525	84684525	G	A	SNP	KLHL36	ENST00000564996	human	ensembl	74_37	+1	known	missense	c.52	p.E18K	1.000	superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686				116	0	0	45	9	16.6667
FOXF1	0	genome.wustl.edu	37	16	86544715	86544715	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	86544715	86544715	G	A	SNP	FOXF1	ENST00000262426	human	ensembl	74_37	+1	known	silent	c.540	p.S180	0.957	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF1	HGNC	ENSG00000103241				59	0	0	20	4	16.6667
CDK10	0	genome.wustl.edu	37	16	89757893	89757893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	89757893	89757893	G	A	SNP	CDK10	ENST00000353379	human	ensembl	74_37	+1	known	missense	c.275	p.R92H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK10	HGNC	ENSG00000185324				55	0	0	17	2	10.5263
MYH13	0	genome.wustl.edu	37	17	10258072	10258072	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	10258072	10258072	G	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	silent	c.930	p.F310	0.989	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				129	0	0	39	7	15.2174
MYH8	0	genome.wustl.edu	37	17	10296236	10296236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	10296236	10296236	G	A	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	missense	c.5375	p.T1792M	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				278	0	0	136	21	13.3758
MYH1	0	genome.wustl.edu	37	17	10404747	10404747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	10404747	10404747	G	A	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.3418	p.R1140C	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				174	0	0	72	10	12.1951
MYH2	0	genome.wustl.edu	37	17	10441021	10441021	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	10441021	10441021	G	A	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	silent	c.1548	p.F516	0.985	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				297	0	0	123	26	17.4497
DNAH9	0	genome.wustl.edu	37	17	11775053	11775053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	11775053	11775053	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.10192	p.R3398W	0.998	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				236	1	0.421941	89	19	17.5926
TEKT3	0	genome.wustl.edu	37	17	15212047	15212047	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	15212047	15212047	T	C	SNP	TEKT3	ENST00000338696	human	ensembl	74_37	-1	known	missense	c.1190	p.Q397R	1.000	pfam_Tektin,prints_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT3	HGNC	ENSG00000125409				151	0	0	69	13	15.8537
PEMT	0	genome.wustl.edu	37	17	17412839	17412839	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	17412839	17412839	T	C	SNP	PEMT	ENST00000255389	human	ensembl	74_37	-1	known	missense	c.487	p.K163E	1.000	pfam_Phopholipid_MeTrfase,pirsf_PEMT/MFAP	pfam_Phopholipid_MeTrfase,pirsf_PEMT/MFAP	-	no_errors	PEMT	HGNC	ENSG00000133027				137	0	0	61	4	6.15385
TOM1L2	0	genome.wustl.edu	37	17	17788064	17788064	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	17788064	17788064	G	A	SNP	TOM1L2	ENST00000379504	human	ensembl	74_37	-1	known	nonsense	c.385	p.R129*	0.997	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_VHS	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L2	HGNC	ENSG00000175662				252	1	0.395257	79	20	20.202
MYO15A	0	genome.wustl.edu	37	17	18058634	18058634	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	18058634	18058634	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.8347	p.V2783M	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				123	1	0.806452	49	10	16.9492
LGALS9B	0	genome.wustl.edu	37	17	20354904	20354904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	20354904	20354904	G	A	SNP	LGALS9B	ENST00000423676	human	ensembl	74_37	-1	known	missense	c.814	p.R272C	0.946	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS9B	HGNC	ENSG00000170298				139	0	0	70	10	12.5
LOC440416	0	genome.wustl.edu	37	17	20805631	20805631	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	20805631	20805631	G	A	SNP	LOC440416	ENST00000577537	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-344E13.3	Clone_based_vega_gene	ENSG00000233098				171	1	0.581395	67	24	26.3736
DHRS7B	0	genome.wustl.edu	37	17	21087756	21087756	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	21087756	21087756	G	A	SNP	DHRS7B	ENST00000395511	human	ensembl	74_37	+1	known	missense	c.599	p.S200N	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_DUF1776_fun	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_DUF1776_fun,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7B	HGNC	ENSG00000109016				140	0	0	44	15	25.4237
FAM27L	0	genome.wustl.edu	37	17	21825448	21825448	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	21825448	21825448	C	T	SNP	FAM27L	ENST00000426869	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	FAM27L	HGNC	ENSG00000178130				78	0	0	22	5	18.5185
SMG6	0	genome.wustl.edu	37	17	2202634	2202634	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	2202634	2202634	C	T	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	silent	c.1413	p.T471	0.000	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				413	0	0	172	29	14.4279
POLDIP2	0	genome.wustl.edu	37	17	26680011	26680011	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	26680011	26680011	G	T	SNP	POLDIP2	ENST00000540200	human	ensembl	74_37	-1	known	silent	c.546	p.P182	1.000	superfamily_Hemimethylated_DNA-bd_dom	pfam_ApaG_domain,pfam_Hemimethylated_DNA-bd_dom,superfamily_ApaG_domain,superfamily_Hemimethylated_DNA-bd_dom,pfscan_ApaG_domain	-	no_errors	POLDIP2	HGNC	ENSG00000004142				62	0	0	16	3	15.7895
SEZ6	0	genome.wustl.edu	37	17	27287983	27287983	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	27287983	27287983	C	T	SNP	SEZ6	ENST00000317338	human	ensembl	74_37	-1	known	missense	c.1249	p.G417S	1.000	pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,pfscan_CUB_dom	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_CUB_dom,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6	HGNC	ENSG00000063015				267	0	0	75	15	16.6667
ABHD15	0	genome.wustl.edu	37	17	27889934	27889934	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	27889934	27889934	G	T	SNP	ABHD15	ENST00000307201	human	ensembl	74_37	-1	known	missense	c.1052	p.P351H	1.000	pirsf_AB-Hydro_YheT	pirsf_AB-Hydro_YheT	-	no_errors	ABHD15	HGNC	ENSG00000168792				140	0	0	40	10	20
SSH2	0	genome.wustl.edu	37	17	27994231	27994231	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	27994231	27994231	G	A	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	missense	c.739	p.R247C	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				54	0	0	32	5	13.5135
GAS2L2	0	genome.wustl.edu	37	17	34077256	34077256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	34077256	34077256	C	T	SNP	GAS2L2	ENST00000254466	human	ensembl	74_37	-1	known	missense	c.467	p.R156H	0.999	pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139				532	0	0	144	32	18.1818
ACACA	0	genome.wustl.edu	37	17	35478397	35478397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	35478397	35478397	C	T	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.6154	p.G2052S	0.995	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				224	0	0	61	15	19.7368
ACACA	0	genome.wustl.edu	37	17	35614709	35614709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	35614709	35614709	G	A	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.1742	p.A581V	1.000	pfam_Biotin_COase_C,superfamily_Rudment_hybrid_motif,smart_Biotin_COase_C,pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				106	0	0	55	9	14.0625
ITGAE	0	genome.wustl.edu	37	17	3657175	3657175	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	3657175	3657175	T	C	SNP	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	missense	c.1429	p.I477V	0.005	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAE	HGNC	ENSG00000083457				110	0	0	38	7	15.5556
PNMT	0	genome.wustl.edu	37	17	37826401	37826401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	37826401	37826401	C	T	SNP	PNMT	ENST00000269582	human	ensembl	74_37	+1	known	missense	c.608	p.T203M	0.723	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	PNMT	HGNC	ENSG00000141744				43	0	0	22	8	26.6667
ATP2A3	0	genome.wustl.edu	37	17	3850715	3850715	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	3850715	3850715	C	T	SNP	ATP2A3	ENST00000359983	human	ensembl	74_37	-1	known	silent	c.1065	p.T355	0.168	prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A3	HGNC	ENSG00000074370				134	0	0	35	11	23.913
ATP2A3	0	genome.wustl.edu	37	17	3854611	3854611	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	3854611	3854611	C	A	SNP	ATP2A3	ENST00000359983	human	ensembl	74_37	-1	known	missense	c.397	p.D133Y	0.988	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A3	HGNC	ENSG00000074370				114	0	0	27	6	18.1818
KRT16	0	genome.wustl.edu	37	17	39767342	39767342	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	39767342	39767342	A	G	SNP	KRT16	ENST00000301653	human	ensembl	74_37	-1	known	silent	c.912	p.A304	0.000	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT16	HGNC	ENSG00000186832				370	0	0	139	26	15.7576
HDAC5	0	genome.wustl.edu	37	17	42165936	42165936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	42165936	42165936	G	A	SNP	HDAC5	ENST00000225983	human	ensembl	74_37	-1	known	missense	c.1421	p.T474M	0.998	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840				67	0	0	18	4	18.1818
GPATCH8	0	genome.wustl.edu	37	17	42513884	42513884	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	42513884	42513884	T	C	SNP	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	missense	c.223	p.K75E	1.000	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				110	0	0	56	6	9.67742
FZD2	0	genome.wustl.edu	37	17	42635443	42635443	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	42635443	42635443	T	C	SNP	FZD2	ENST00000315323	human	ensembl	74_37	+1	known	silent	c.387	p.G129	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD2	HGNC	ENSG00000180340				166	0	0	63	5	7.35294
ACBD4	0	genome.wustl.edu	37	17	43221001	43221001	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	43221001	43221001	G	T	SNP	ACBD4	ENST00000431281	human	ensembl	74_37	+1	known	missense	c.1019	p.R340M	0.000	NULL	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD4	HGNC	ENSG00000181513				80	0	0	44	8	15.3846
FMNL1	0	genome.wustl.edu	37	17	43321564	43321564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	43321564	43321564	G	A	SNP	FMNL1	ENST00000328118	human	ensembl	74_37	+1	known	missense	c.2470	p.A824T	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL1	HGNC	ENSG00000184922				39	0	0	11	6	35.2941
MYBBP1A	0	genome.wustl.edu	37	17	4446270	4446270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	4446270	4446270	G	A	SNP	MYBBP1A	ENST00000381556	human	ensembl	74_37	-1	known	missense	c.2830	p.H944Y	0.000	superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382				239	0	0	89	17	16.0377
PELP1	0	genome.wustl.edu	37	17	4576294	4576294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	4576294	4576294	C	T	SNP	PELP1	ENST00000269230	human	ensembl	74_37	-1	known	missense	c.1724	p.R575H	0.650	NULL	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456				116	0	0	28	5	15.1515
ZMYND15	0	genome.wustl.edu	37	17	4647919	4647919	+	Splice_Site	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	4647919	4647919	G	T	SNP	ZMYND15	ENST00000433935	human	ensembl	74_37	+1	known	splice_site	c.1684-1	e10-1	0.996	-	-	-	no_errors	ZMYND15	HGNC	ENSG00000141497				213	0	0	79	22	21.7822
DLX3	0	genome.wustl.edu	37	17	48072218	48072218	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	48072218	48072218	C	T	SNP	DLX3	ENST00000434704	human	ensembl	74_37	-1	known	missense	c.145	p.D49N	1.000	pfam_Distal-less_N	pfam_Distal-less_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX3	HGNC	ENSG00000064195				188	0	0	60	9	13.0435
SPATA20	0	genome.wustl.edu	37	17	48628511	48628511	+	Silent	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	48628511	48628511	C	A	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	silent	c.1536	p.P512	0.001	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				54	0	0	13	11	45.8333
CAMTA2	0	genome.wustl.edu	37	17	4875560	4875560	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	4875560	4875560	G	A	SNP	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	silent	c.2844	p.D948	0.003	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				225	1	0.442478	66	13	16.4557
NUP88	0	genome.wustl.edu	37	17	5314064	5314064	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	5314064	5314064	T	C	SNP	NUP88	ENST00000573584	human	ensembl	74_37	-1	known	missense	c.639	p.I213M	0.165	pfam_Nucleoporin_Nup88	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559				338	0	0	155	12	7.18563
LPO	0	genome.wustl.edu	37	17	56329565	56329565	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	56329565	56329565	C	T	SNP	LPO	ENST00000262290	human	ensembl	74_37	+1	known	missense	c.803	p.A268V	0.001	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419				113	0	0	34	4	10.5263
MTMR4	0	genome.wustl.edu	37	17	56585898	56585898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	56585898	56585898	G	A	SNP	MTMR4	ENST00000323456	human	ensembl	74_37	-1	known	missense	c.482	p.A161V	0.999	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389				126	0	0	46	8	14.8148
DHX40	0	genome.wustl.edu	37	17	57679954	57679954	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	57679954	57679954	C	T	SNP	DHX40	ENST00000251241	human	ensembl	74_37	+1	known	silent	c.1878	p.G626	0.989	pfam_DUF1605	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX40	HGNC	ENSG00000108406				80	0	0	44	8	15.3846
BCAS3	0	genome.wustl.edu	37	17	58786631	58786631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	58786631	58786631	C	T	SNP	BCAS3	ENST00000390652	human	ensembl	74_37	+1	known	missense	c.266	p.P89L	0.997	NULL	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376				114	0	0	51	5	8.92857
PLEKHM1P	0	genome.wustl.edu	37	17	62788490	62788490	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	62788490	62788490	G	A	SNP	PLEKHM1P	ENST00000578036	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	PLEKHM1P	HGNC	ENSG00000214176				102	0	0	33	5	13.1579
NOL11	0	genome.wustl.edu	37	17	65720271	65720271	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	65720271	65720271	C	T	SNP	NOL11	ENST00000253247	human	ensembl	74_37	+1	known	missense	c.626	p.A209V	0.998	pfam_NUC205	pfam_NUC205	-	no_errors	NOL11	HGNC	ENSG00000130935				55	0	0	31	5	13.8889
BPTF	0	genome.wustl.edu	37	17	65942195	65942195	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	65942195	65942195	G	T	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.7749	p.Q2583H	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				93	0	0	41	13	24.0741
ELP5	0	genome.wustl.edu	37	17	7158035	7158035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	7158035	7158035	G	A	SNP	ELP5	ENST00000354429	human	ensembl	74_37	+1	known	missense	c.370	p.D124N	0.992	pfam_Elp5	pfam_Elp5	-	no_errors	ELP5	HGNC	ENSG00000170291				114	0	0	53	9	14.5161
SLC2A4	0	genome.wustl.edu	37	17	7186563	7186563	+	Splice_Site	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	7186563	7186563	G	T	SNP	SLC2A4	ENST00000317370	human	ensembl	74_37	+1	known	splice_site	c.34-1	e2-1	1.000	-	-	-	no_errors	SLC2A4	HGNC	ENSG00000181856				267	0	0	107	27	20.1493
C17orf77	0	genome.wustl.edu	37	17	72588709	72588709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	72588709	72588709	C	T	SNP	C17orf77	ENST00000328023	human	ensembl	74_37	+1	known	missense	c.524	p.T175M	0.000	NULL	NULL	-	no_errors	C17orf77	HGNC	ENSG00000182352				68	0	0	30	4	11.7647
NLGN2	0	genome.wustl.edu	37	17	7319189	7319189	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	7319189	7319189	C	T	SNP	NLGN2	ENST00000302926	human	ensembl	74_37	+1	known	missense	c.1397	p.A466V	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992				88	0	0	39	7	15.2174
GGA3	0	genome.wustl.edu	37	17	73235131	73235131	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	73235131	73235131	T	G	SNP	GGA3	ENST00000245541	human	ensembl	74_37	-1	known	missense	c.1814	p.N605T	0.999	pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA3	HGNC	ENSG00000125447				93	0	0	25	8	24.2424
GGA3	0	genome.wustl.edu	37	17	73237561	73237561	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	73237561	73237561	A	G	SNP	GGA3	ENST00000245541	human	ensembl	74_37	-1	known	missense	c.866	p.V289A	1.000	pfam_GAT,pfscan_GAT	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA3	HGNC	ENSG00000125447				243	0	0	150	23	13.2948
CHRNB1	0	genome.wustl.edu	37	17	7351982	7351982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	7351982	7351982	G	A	SNP	CHRNB1	ENST00000306071	human	ensembl	74_37	+1	known	missense	c.695	p.R232H	0.016	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB1	HGNC	ENSG00000170175				100	0	0	31	5	13.8889
ITGB4	0	genome.wustl.edu	37	17	73748326	73748326	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	73748326	73748326	C	T	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	missense	c.3865	p.R1289W	0.997	pirsf_Integrin_bsu-4,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				411	0	0	133	38	22.2222
FBF1	0	genome.wustl.edu	37	17	73922938	73922938	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	73922938	73922938	C	A	SNP	FBF1	ENST00000389570	human	ensembl	74_37	-1	known	nonsense	c.454	p.G152*	1.000	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878				33	0	0	11	4	26.6667
GALR2	0	genome.wustl.edu	37	17	74071298	74071298	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	74071298	74071298	A	G	SNP	GALR2	ENST00000329003	human	ensembl	74_37	+1	known	missense	c.334	p.S112G	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_GAL2_rcpt	-	no_errors	GALR2	HGNC	ENSG00000182687				96	0	0	39	9	18.75
RHBDF2	0	genome.wustl.edu	37	17	74475291	74475291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	74475291	74475291	C	T	SNP	RHBDF2	ENST00000313080	human	ensembl	74_37	-1	known	missense	c.428	p.S143N	1.000	pfam_Rhomboid_SP	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667				50	0	0	19	5	20.8333
TMC8	0	genome.wustl.edu	37	17	76137013	76137013	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	76137013	76137013	A	T	SNP	TMC8	ENST00000318430	human	ensembl	74_37	+1	known	missense	c.2001	p.Q667H	0.014	NULL	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895				25	0	0	5	3	37.5
AFMID	0	genome.wustl.edu	37	17	76203090	76203090	+	Nonstop_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	76203090	76203090	T	G	SNP	AFMID	ENST00000591952	human	ensembl	74_37	+1	novel	nonstop	c.253	p.*85G	0.000	NULL	NULL	-	no_errors	AFMID	HGNC	ENSG00000183077				59	0	0	29	7	19.4444
LGALS3BP	0	genome.wustl.edu	37	17	76970808	76970808	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	76970808	76970808	C	T	SNP	LGALS3BP	ENST00000262776	human	ensembl	74_37	-1	known	missense	c.338	p.C113Y	0.995	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	pfam_SRCR,pfam_BACK,superfamily_Srcr_rcpt-rel,superfamily_BTB/POZ_fold,smart_Srcr_rcpt-rel,smart_BACK,pfscan_BTB/POZ-like,pfscan_SRCR,prints_SRCR	-	no_errors	LGALS3BP	HGNC	ENSG00000108679				64	0	0	18	9	33.3333
LSMD1	0	genome.wustl.edu	37	17	7760760	7760760	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	7760760	7760760	T	C	SNP	LSMD1	ENST00000335155	human	ensembl	74_37	-1	known	missense	c.22	p.M8V	0.988	NULL	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSMD1	HGNC	ENSG00000183011				111	0	0	52	9	14.7541
RNF213	0	genome.wustl.edu	37	17	78345759	78345759	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	78345759	78345759	T	C	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.12511	p.Y4171H	0.928	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				64	0	0	20	5	20
CNTROB	0	genome.wustl.edu	37	17	7852792	7852792	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	7852792	7852792	G	A	SNP	CNTROB	ENST00000380262	human	ensembl	74_37	+1	known	silent	c.2742	p.P914	0.000	NULL	NULL	-	no_errors	CNTROB	HGNC	ENSG00000170037				114	0	0	52	9	14.7541
CCDC137	0	genome.wustl.edu	37	17	79634813	79634813	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	79634813	79634813	T	C	SNP	CCDC137	ENST00000329214	human	ensembl	74_37	+1	known	silent	c.189	p.I63	0.988	NULL	NULL	-	no_errors	CCDC137	HGNC	ENSG00000185298				86	0	0	32	4	11.1111
ARHGEF15	0	genome.wustl.edu	37	17	8215445	8215445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	8215445	8215445	G	A	SNP	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	missense	c.88	p.A30T	0.111	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				221	0	0	79	12	13.1868
PIK3R5	0	genome.wustl.edu	37	17	8790929	8790929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	8790929	8790929	C	T	SNP	PIK3R5	ENST00000447110	human	ensembl	74_37	-1	known	missense	c.1688	p.R563Q	0.997	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506				29	0	0	9	3	25
SEH1L	0	genome.wustl.edu	37	18	12951893	12951893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	12951893	12951893	G	A	SNP	SEH1L	ENST00000399892	human	ensembl	74_37	+1	known	missense	c.151	p.A51T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SEH1L	HGNC	ENSG00000085415				240	1	0.414938	98	20	16.9492
ZNF521	0	genome.wustl.edu	37	18	22806905	22806905	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	22806905	22806905	T	C	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.977	p.Y326C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				66	0	0	39	6	13.3333
SMCHD1	0	genome.wustl.edu	37	18	2700849	2700849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	2700849	2700849	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	missense	c.1580	p.T527M	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596				156	0	0	54	10	15.625
GALNT1	0	genome.wustl.edu	37	18	33243730	33243730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	33243730	33243730	C	T	SNP	GALNT1	ENST00000269195	human	ensembl	74_37	+1	known	missense	c.278	p.A93V	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT1	HGNC	ENSG00000141429				173	0	0	52	39	42.8571
DLGAP1	0	genome.wustl.edu	37	18	3879724	3879724	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	3879724	3879724	G	A	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	silent	c.345	p.R115	0.024	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579				181	1	0.549451	69	20	22.4719
SLC14A2	0	genome.wustl.edu	37	18	43253755	43253755	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	43253755	43253755	C	T	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	nonsense	c.2485	p.Q829*	1.000	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				114	0	0	40	5	11.1111
SERPINB4	0	genome.wustl.edu	37	18	61306894	61306894	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	61306894	61306894	T	C	SNP	SERPINB4	ENST00000341074	human	ensembl	74_37	-1	known	missense	c.586	p.K196E	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB4	HGNC	ENSG00000206073				94	0	0	25	10	28.5714
CDH7	0	genome.wustl.edu	37	18	63547708	63547708	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	63547708	63547708	A	G	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	missense	c.1936	p.I646V	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				92	0	0	32	8	20
CDH19	0	genome.wustl.edu	37	18	64235727	64235727	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	64235727	64235727	G	A	SNP	CDH19	ENST00000262150	human	ensembl	74_37	-1	known	missense	c.416	p.S139L	0.989	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991				149	0	0	70	13	15.6627
NETO1	0	genome.wustl.edu	37	18	70450955	70450955	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	70450955	70450955	G	A	SNP	NETO1	ENST00000327305	human	ensembl	74_37	-1	known	nonsense	c.826	p.R276*	0.999	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342				237	0	0	95	16	14.4144
MBP	0	genome.wustl.edu	37	18	74729219	74729219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	74729219	74729219	C	T	SNP	MBP	ENST00000355994	human	ensembl	74_37	-1	known	missense	c.145	p.A49T	1.000	NULL	pfam_Myelin_BP,prints_Myelin_BP	-	no_errors	MBP	HGNC	ENSG00000197971				88	0	0	35	4	10.2564
SOGA2	0	genome.wustl.edu	37	18	8825096	8825096	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	8825096	8825096	G	A	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	silent	c.3588	p.P1196	0.251	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				116	0	0	68	7	9.33333
ICAM5	0	genome.wustl.edu	37	19	10404794	10404794	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	10404794	10404794	A	G	SNP	ICAM5	ENST00000221980	human	ensembl	74_37	+1	known	missense	c.1790	p.E597G	0.993	smart_Ig_sub	pfam_Ig_I-set,pfam_ICAM_N,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM5	HGNC	ENSG00000105376				301	0	0	104	6	5.45455
CDC37	0	genome.wustl.edu	37	19	10506724	10506724	+	Silent	SNP	G	G	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	10506724	10506724	G	C	SNP	CDC37	ENST00000222005	human	ensembl	74_37	-1	known	silent	c.258	p.A86	0.182	pfam_Cdc37_N_dom	pfam_Cdc37_Hsp90-bd,pfam_Cdc37_N_dom,pfam_Cdc37_C	-	no_errors	CDC37	HGNC	ENSG00000105401				307	1	0.324675	120	26	17.8082
YIPF2	0	genome.wustl.edu	37	19	11038348	11038348	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	11038348	11038348	G	T	SNP	YIPF2	ENST00000253031	human	ensembl	74_37	-1	known	silent	c.237	p.T79	0.992	NULL	pfam_Yip1	-	no_errors	YIPF2	HGNC	ENSG00000130733				126	0	0	49	6	10.9091
SMARCA4	0	genome.wustl.edu	37	19	11138595	11138595	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	11138595	11138595	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	silent	c.3351	p.A1117	0.037	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				385	0	0	129	31	19.375
DOCK6	0	genome.wustl.edu	37	19	11352784	11352784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	11352784	11352784	C	T	SNP	DOCK6	ENST00000294618	human	ensembl	74_37	-1	known	missense	c.1580	p.R527Q	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N	-	no_errors	DOCK6	HGNC	ENSG00000130158				29	0	0	8	2	20
ECSIT	0	genome.wustl.edu	37	19	11618782	11618782	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	11618782	11618782	C	T	SNP	ECSIT	ENST00000592312	human	ensembl	74_37	-1	putative	missense	c.472	p.A158T	0.000	NULL	pfam_ECSIT	-	no_errors	ECSIT	HGNC	ENSG00000130159				135	0	0	44	11	20
MAN2B1	0	genome.wustl.edu	37	19	12774530	12774530	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	12774530	12774530	C	T	SNP	MAN2B1	ENST00000456935	human	ensembl	74_37	-1	known	silent	c.750	p.A250	0.004	pfam_Glyco_hydro_38_N,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774				27	0	0	18	5	21.7391
MAST1	0	genome.wustl.edu	37	19	12985409	12985409	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	12985409	12985409	T	C	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	missense	c.4438	p.W1480R	1.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				22	0	0	15	3	16.6667
PKN1	0	genome.wustl.edu	37	19	14574680	14574680	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	14574680	14574680	C	T	SNP	PKN1	ENST00000342216	human	ensembl	74_37	+1	known	silent	c.1554	p.V518	0.069	NULL	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN1	HGNC	ENSG00000123143				91	0	0	34	8	19.0476
EMR2	0	genome.wustl.edu	37	19	14854579	14854579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	14854579	14854579	G	A	SNP	EMR2	ENST00000315576	human	ensembl	74_37	-1	known	missense	c.2201	p.A734V	0.920	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR2	HGNC	ENSG00000127507				143	0	0	58	5	7.93651
SLC1A6	0	genome.wustl.edu	37	19	15079275	15079275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	15079275	15079275	G	A	SNP	SLC1A6	ENST00000221742	human	ensembl	74_37	-1	known	missense	c.388	p.R130W	0.488	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143				32	0	0	14	9	39.1304
BRD4	0	genome.wustl.edu	37	19	15383721	15383721	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	15383721	15383721	G	A	SNP	BRD4	ENST00000263377	human	ensembl	74_37	-1	known	nonsense	c.190	p.Q64*	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				214	0	0	51	14	21.5385
CYP4F3	0	genome.wustl.edu	37	19	15752261	15752261	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	15752261	15752261	G	A	SNP	CYP4F3	ENST00000221307	human	ensembl	74_37	+1	known	nonsense	c.36	p.W12*	0.001	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F3	HGNC	ENSG00000186529				165	0	0	49	9	15.5172
NWD1	0	genome.wustl.edu	37	19	16860087	16860087	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	16860087	16860087	G	C	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.634	p.A212P	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				157	1	0.632911	49	32	39.5062
SIN3B	0	genome.wustl.edu	37	19	16976446	16976446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	16976446	16976446	G	A	SNP	SIN3B	ENST00000379803	human	ensembl	74_37	+1	known	missense	c.1705	p.V569I	0.813	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511				42	0	0	16	7	30.4348
USHBP1	0	genome.wustl.edu	37	19	17361173	17361173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	17361173	17361173	C	T	SNP	USHBP1	ENST00000252597	human	ensembl	74_37	-1	known	missense	c.1973	p.R658H	0.956	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307				153	0	0	45	12	21.0526
REXO1	0	genome.wustl.edu	37	19	1819962	1819962	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	1819962	1819962	A	T	SNP	REXO1	ENST00000170168	human	ensembl	74_37	-1	known	missense	c.2621	p.L874Q	0.707	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313				82	0	0	20	3	13.0435
PIK3R2	0	genome.wustl.edu	37	19	18277076	18277076	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	18277076	18277076	G	A	SNP	PIK3R2	ENST00000222254	human	ensembl	74_37	+1	known	missense	c.1523	p.R508H	0.839	prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R2	HGNC	ENSG00000105647				86	0	0	33	4	10.8108
KIAA1683	0	genome.wustl.edu	37	19	18376403	18376403	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	18376403	18376403	C	T	SNP	KIAA1683	ENST00000392413	human	ensembl	74_37	-1	known	silent	c.1947	p.V649	0.037	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518				111	0	0	49	11	18.3333
MAU2	0	genome.wustl.edu	37	19	19431805	19431805	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	19431805	19431805	T	C	SNP	MAU2	ENST00000262815	human	ensembl	74_37	+1	known	missense	c.137	p.L46P	1.000	pfam_Cohesin_loading_factor	pfam_Cohesin_loading_factor,smart_TPR_repeat	-	no_errors	MAU2	HGNC	ENSG00000129933				25	0	0	11	3	21.4286
GNA11	0	genome.wustl.edu	37	19	3119273	3119273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	3119273	3119273	G	A	SNP	GNA11	ENST00000078429	human	ensembl	74_37	+1	known	missense	c.805	p.V269I	0.999	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_Gprotein_alpha	-	no_errors	GNA11	HGNC	ENSG00000088256				189	0	0	85	9	9.57447
MIER2	0	genome.wustl.edu	37	19	327209	327209	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	327209	327209	C	T	SNP	MIER2	ENST00000264819	human	ensembl	74_37	-1	known	silent	c.417	p.T139	0.154	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER2	HGNC	ENSG00000105556				394	0	0	175	35	16.6667
RHPN2	0	genome.wustl.edu	37	19	33493301	33493301	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	33493301	33493301	C	G	SNP	RHPN2	ENST00000254260	human	ensembl	74_37	-1	known	missense	c.957	p.E319D	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941				164	0	0	62	14	18.4211
LRP3	0	genome.wustl.edu	37	19	33697253	33697253	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	33697253	33697253	G	A	SNP	LRP3	ENST00000253193	human	ensembl	74_37	+1	known	missense	c.1577	p.R526H	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP3	HGNC	ENSG00000130881				40	0	0	10	3	23.0769
KCTD15	0	genome.wustl.edu	37	19	34297878	34297878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	34297878	34297878	G	A	SNP	KCTD15	ENST00000430256	human	ensembl	74_37	+1	known	missense	c.353	p.R118Q	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD15	HGNC	ENSG00000153885				175	0	0	60	16	21.0526
KCTD15	0	genome.wustl.edu	37	19	34302307	34302307	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	34302307	34302307	C	T	SNP	KCTD15	ENST00000430256	human	ensembl	74_37	+1	known	silent	c.543	p.I181	0.989	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD15	HGNC	ENSG00000153885				27	0	0	13	4	23.5294
FAM187B	0	genome.wustl.edu	37	19	35719411	35719411	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	35719411	35719411	C	G	SNP	FAM187B	ENST00000324675	human	ensembl	74_37	-1	known	missense	c.173	p.G58A	0.000	NULL	NULL	-	no_errors	FAM187B	HGNC	ENSG00000177558				142	0	0	45	9	16.6667
LRFN3	0	genome.wustl.edu	37	19	36435744	36435744	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	36435744	36435744	C	T	SNP	LRFN3	ENST00000246529	human	ensembl	74_37	+1	known	silent	c.1710	p.P570	0.005	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN3	HGNC	ENSG00000126243				46	0	0	29	7	19.4444
TJP3	0	genome.wustl.edu	37	19	3748014	3748014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	3748014	3748014	G	A	SNP	TJP3	ENST00000262968	human	ensembl	74_37	+1	known	missense	c.2644	p.V882M	0.852	prints_ZonOcculdens	pfam_PDZ,pfam_SH3_2,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289				26	0	0	11	4	26.6667
ZNF793	0	genome.wustl.edu	37	19	38028433	38028433	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	38028433	38028433	C	T	SNP	ZNF793	ENST00000445217	human	ensembl	74_37	+1	known	silent	c.873	p.A291	0.969	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF793	HGNC	ENSG00000188227				93	0	0	42	4	8.69565
PLD3	0	genome.wustl.edu	37	19	40877625	40877625	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	40877625	40877625	C	T	SNP	PLD3	ENST00000356508	human	ensembl	74_37	+1	known	nonsense	c.724	p.R242*	0.103	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD3	HGNC	ENSG00000105223				62	0	0	21	4	16
MAP2K2	0	genome.wustl.edu	37	19	4117450	4117450	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	4117450	4117450	C	T	SNP	MAP2K2	ENST00000262948	human	ensembl	74_37	-1	known	silent	c.270	p.Q90	0.990	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K2	HGNC	ENSG00000126934				77	0	0	40	8	16.6667
NUMBL	0	genome.wustl.edu	37	19	41188832	41188832	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	41188832	41188832	G	A	SNP	NUMBL	ENST00000252891	human	ensembl	74_37	-1	known	silent	c.291	p.H97	1.000	pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pirsf_Numb/numb-like,pfscan_PTB/PI_dom	pfam_Numb_domain,pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pirsf_Numb/numb-like,pfscan_PTB/PI_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245				193	0	0	61	13	17.5676
CYP2A7	0	genome.wustl.edu	37	19	41386388	41386388	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	41386388	41386388	C	T	SNP	CYP2A7	ENST00000301146	human	ensembl	74_37	-1	known	silent	c.489	p.T163	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2B-like	-	no_errors	CYP2A7	HGNC	ENSG00000198077				176	0	0	60	10	14.2857
CIC	0	genome.wustl.edu	37	19	42795827	42795827	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	42795827	42795827	G	C	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.2816	p.G939A	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				241	1	0.413223	81	26	24.2991
MEGF8	0	genome.wustl.edu	37	19	42873057	42873057	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	42873057	42873057	T	C	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	missense	c.6544	p.C2182R	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				146	0	0	60	4	6.25
MPND	0	genome.wustl.edu	37	19	4357406	4357406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	4357406	4357406	G	A	SNP	MPND	ENST00000262966	human	ensembl	74_37	+1	known	missense	c.1153	p.A385T	0.998	NULL	pfam_JAB_MPN_dom	-	no_errors	MPND	HGNC	ENSG00000008382				61	0	0	24	6	20
PSG9	0	genome.wustl.edu	37	19	43772054	43772054	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	43772054	43772054	G	A	SNP	PSG9	ENST00000270077	human	ensembl	74_37	-1	known	silent	c.312	p.N104	0.195	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG9	HGNC	ENSG00000183668				544	0	0	222	52	18.9781
CLASRP	0	genome.wustl.edu	37	19	45543570	45543570	+	Splice_Site	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	45543570	45543570	G	A	SNP	CLASRP	ENST00000221455	human	ensembl	74_37	+1	known	splice_site	c.99+1	e1+1	1.000	-	-	-	no_errors	CLASRP	HGNC	ENSG00000104859				28	0	0	9	3	25
GIPR	0	genome.wustl.edu	37	19	46180981	46180981	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	46180981	46180981	A	G	SNP	GIPR	ENST00000590918	human	ensembl	74_37	+1	known	missense	c.868	p.N290D	1.000	pfam_GPCR_2_secretin-like,prints_GPCR_2_GIP_rcpt,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,prints_GPCR_2_GIP_rcpt,prints_GPCR_2_secretin-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	GIPR	HGNC	ENSG00000010310				354	0	0	128	15	10.4895
FOXA3	0	genome.wustl.edu	37	19	46375402	46375402	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	46375402	46375402	A	G	SNP	FOXA3	ENST00000302177	human	ensembl	74_37	+1	known	missense	c.139	p.S47G	1.000	pfam_Fork-head_N	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA3	HGNC	ENSG00000170608				179	0	0	69	4	5.47945
PNMAL2	0	genome.wustl.edu	37	19	46998569	46998569	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	46998569	46998569	G	A	SNP	PNMAL2	ENST00000599531	human	ensembl	74_37	-1	known	nonsense	c.154	p.R52*	0.001	NULL	NULL	-	no_errors	PNMAL2	HGNC	ENSG00000204851				191	1	0.520833	75	15	16.6667
ARHGAP35	0	genome.wustl.edu	37	19	47425354	47425354	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	47425354	47425354	G	A	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	missense	c.3422	p.S1141N	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007				109	0	0	29	5	14.7059
ZC3H4	0	genome.wustl.edu	37	19	47572412	47572412	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	47572412	47572412	C	G	SNP	ZC3H4	ENST00000253048	human	ensembl	74_37	-1	known	missense	c.2335	p.E779Q	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H4	HGNC	ENSG00000130749				221	0	0	74	15	16.8539
GLTSCR1	0	genome.wustl.edu	37	19	48184029	48184029	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	48184029	48184029	C	T	SNP	GLTSCR1	ENST00000396720	human	ensembl	74_37	+1	known	silent	c.1602	p.S534	0.005	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169				131	0	0	37	9	19.5652
KCNA7	0	genome.wustl.edu	37	19	49575417	49575417	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	49575417	49575417	C	T	SNP	KCNA7	ENST00000221444	human	ensembl	74_37	-1	known	silent	c.426	p.A142	1.000	prints_K_chnl,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848				84	0	0	23	5	17.8571
SYT3	0	genome.wustl.edu	37	19	51129177	51129177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	51129177	51129177	G	A	SNP	SYT3	ENST00000338916	human	ensembl	74_37	-1	known	missense	c.1379	p.A460V	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT3	HGNC	ENSG00000213023				52	0	0	16	3	15.7895
ACPT	0	genome.wustl.edu	37	19	51297840	51297840	+	Splice_Site	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	51297840	51297840	T	C	SNP	ACPT	ENST00000270594	human	ensembl	74_37	+1	known	splice_site	c.707+2	e7+2	0.997	-	-	-	no_errors	ACPT	HGNC	ENSG00000142513				58	0	0	29	4	12.1212
PPP2R1A	0	genome.wustl.edu	37	19	52725404	52725404	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	52725404	52725404	C	T	SNP	PPP2R1A	ENST00000322088	human	ensembl	74_37	+1	known	missense	c.1571	p.T524M	0.996	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568				48	0	0	22	3	12
ZNF83	0	genome.wustl.edu	37	19	53117809	53117809	+	Silent	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	53117809	53117809	C	A	SNP	ZNF83	ENST00000301096	human	ensembl	74_37	-1	known	silent	c.9	p.G3	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF83	HGNC	ENSG00000167766				61	0	0	44	4	8.33333
ZNF665	0	genome.wustl.edu	37	19	53667933	53667933	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	53667933	53667933	C	T	SNP	ZNF665	ENST00000396424	human	ensembl	74_37	-1	known	missense	c.1810	p.G604S	0.456	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497				190	0	0	88	13	12.8713
LILRB5	0	genome.wustl.edu	37	19	54754814	54754814	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	54754814	54754814	G	T	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	silent	c.1821	p.L607	0.002	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				85	0	0	30	4	11.7647
LENG9	0	genome.wustl.edu	37	19	54973657	54973657	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	54973657	54973657	A	G	SNP	LENG9	ENST00000333834	human	ensembl	74_37	-1	known	silent	c.1119	p.A373	0.731	superfamily_RNA_ligase/cNuc_Pdiesterase	superfamily_RNA_ligase/cNuc_Pdiesterase,smart_Znf_CCCH	-	no_errors	LENG9	HGNC	ENSG00000182909				171	0	0	57	8	12.3077
KIR2DL1	0	genome.wustl.edu	37	19	55286906	55286906	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	55286906	55286906	C	T	SNP	KIR2DL1	ENST00000336077	human	ensembl	74_37	+1	known	silent	c.660	p.V220	0.005	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL1	HGNC	ENSG00000125498				315	0	0	138	12	8
ENSG00000268678	0	genome.wustl.edu	37	19	57863135	57863135	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	57863135	57863135	G	A	SNP	ENSG00000268678	ENST00000597973	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTC-444N24.13	Clone_based_vega_gene	ENSG00000268678				46	0	0	26	8	23.5294
ZNF606	0	genome.wustl.edu	37	19	58490991	58490991	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	58490991	58490991	T	C	SNP	ZNF606	ENST00000341164	human	ensembl	74_37	-1	known	missense	c.1057	p.I353V	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704				153	0	0	63	21	25
GTF2F1	0	genome.wustl.edu	37	19	6380326	6380326	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	6380326	6380326	A	C	SNP	GTF2F1	ENST00000394456	human	ensembl	74_37	-1	known	missense	c.1520	p.I507S	0.975	pfam_TFIIF-alpha	pfam_TFIIF-alpha,superfamily_TFIIF_interaction	-	no_errors	GTF2F1	HGNC	ENSG00000125651				411	2	0.484262	155	32	17.1123
C3	0	genome.wustl.edu	37	19	6680187	6680187	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	6680187	6680187	A	G	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.4438	p.Y1480H	1.000	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				153	0	0	67	15	18.2927
LRRC8E	0	genome.wustl.edu	37	19	7964276	7964276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	7964276	7964276	C	T	SNP	LRRC8E	ENST00000306708	human	ensembl	74_37	+1	known	missense	c.869	p.T290M	0.942	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017				62	0	0	34	8	19.0476
ACTL9	0	genome.wustl.edu	37	19	8808894	8808894	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	8808894	8808894	A	T	SNP	ACTL9	ENST00000324436	human	ensembl	74_37	-1	known	missense	c.158	p.V53D	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL9	HGNC	ENSG00000181786				188	0	0	69	16	18.8235
MUC16	0	genome.wustl.edu	37	19	9060506	9060506	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	9060506	9060506	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.26940	p.S8980	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				315	0	0	143	36	20.1117
GRHL1	0	genome.wustl.edu	37	2	10136026	10136026	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	10136026	10136026	C	A	SNP	GRHL1	ENST00000324907	human	ensembl	74_37	+1	known	missense	c.1519	p.P507T	0.992	NULL	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317				406	0	0	140	40	22.2222
NPAS2	0	genome.wustl.edu	37	2	101594191	101594191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	101594191	101594191	C	T	SNP	NPAS2	ENST00000542504	human	ensembl	74_37	+1	known	missense	c.1607	p.S536L	0.007	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485				150	0	0	51	5	8.92857
NCK2	0	genome.wustl.edu	37	2	106509597	106509597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	106509597	106509597	G	A	SNP	NCK2	ENST00000233154	human	ensembl	74_37	+1	known	missense	c.1108	p.G370R	1.000	pirsf_Cytoplasmic_NCK,pfscan_SH2	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK2	HGNC	ENSG00000071051				27	0	0	9	4	30.7692
FOXD4L1	0	genome.wustl.edu	37	2	114257389	114257389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	114257389	114257389	G	A	SNP	FOXD4L1	ENST00000306507	human	ensembl	74_37	+1	known	missense	c.556	p.A186T	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L1	HGNC	ENSG00000184492				586	0	0	205	42	17.004
DPP10	0	genome.wustl.edu	37	2	116572537	116572537	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	116572537	116572537	A	C	SNP	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	missense	c.1881	p.E627D	1.000	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497				226	0	0	89	18	16.8224
GREB1	0	genome.wustl.edu	37	2	11780503	11780503	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	11780503	11780503	C	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.5773	p.R1925W	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				148	0	0	50	9	15.2542
SMPD4	0	genome.wustl.edu	37	2	130930247	130930247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	130930247	130930247	G	A	SNP	SMPD4	ENST00000409031	human	ensembl	74_37	-1	known	missense	c.575	p.P192L	0.998	NULL	NULL	-	no_errors	SMPD4	HGNC	ENSG00000136699				226	1	0.440529	68	13	16.0494
LOC150776	0	genome.wustl.edu	37	2	132263987	132263987	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	132263987	132263987	C	T	SNP	LOC150776	ENST00000438378	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.968	-	-	-	no_errors	AC093838.4	Clone_based_vega_gene	ENSG00000152117				106	0	0	26	7	21.2121
NCKAP5	0	genome.wustl.edu	37	2	133541594	133541594	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	133541594	133541594	C	T	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	silent	c.2790	p.P930	0.196	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				54	0	0	15	3	16.6667
LOC100507600	0	genome.wustl.edu	37	2	136579747	136579747	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	136579747	136579747	G	A	SNP	LOC100507600	ENST00000437007	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC011893.3	Clone_based_vega_gene	ENSG00000226806				29	0	0	20	5	20
BAZ2B	0	genome.wustl.edu	37	2	160181327	160181327	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	160181327	160181327	A	G	SNP	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	silent	c.6348	p.S2116	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636				52	0	0	22	6	21.4286
FAP	0	genome.wustl.edu	37	2	163099429	163099429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	163099429	163099429	C	T	SNP	FAP	ENST00000188790	human	ensembl	74_37	-1	known	missense	c.80	p.R27H	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098				52	0	0	15	3	16.6667
PXDN	0	genome.wustl.edu	37	2	1652415	1652415	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	1652415	1652415	G	A	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.3137	p.T1046M	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				36	0	0	11	3	21.4286
XIRP2	0	genome.wustl.edu	37	2	168105457	168105457	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	168105457	168105457	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.7555	p.I2519V	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				202	0	0	76	10	11.6279
LRP2	0	genome.wustl.edu	37	2	169996081	169996081	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	169996081	169996081	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	silent	c.13239	p.A4413	0.333	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				260	0	0	117	15	11.3636
FASTKD1	0	genome.wustl.edu	37	2	170416906	170416906	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	170416906	170416906	T	C	SNP	FASTKD1	ENST00000453153	human	ensembl	74_37	-1	known	missense	c.962	p.E321G	1.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD1	HGNC	ENSG00000138399				201	0	0	80	23	22.3301
GORASP2	0	genome.wustl.edu	37	2	171822458	171822458	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	171822458	171822458	G	A	SNP	GORASP2	ENST00000452526	human	ensembl	74_37	+1	known	missense	c.1213	p.A405T	0.027	NULL	pfam_GRASP55/65_PDZ,superfamily_PDZ	-	no_errors	GORASP2	HGNC	ENSG00000115806				169	0	0	58	18	23.6842
CDCA7	0	genome.wustl.edu	37	2	174229545	174229545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	174229545	174229545	G	A	SNP	CDCA7	ENST00000306721	human	ensembl	74_37	+1	known	missense	c.722	p.R241H	0.885	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7	HGNC	ENSG00000144354				125	0	0	67	16	19.2771
RBM45	0	genome.wustl.edu	37	2	178977308	178977308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	178977308	178977308	G	A	SNP	RBM45	ENST00000286070	human	ensembl	74_37	+1	known	missense	c.35	p.G12D	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM45	HGNC	ENSG00000155636				97	0	0	48	5	9.43396
OSBPL6	0	genome.wustl.edu	37	2	179259111	179259111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	179259111	179259111	G	A	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	missense	c.2657	p.R886Q	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				234	0	0	91	18	16.5138
TTN	0	genome.wustl.edu	37	2	179397429	179397429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	179397429	179397429	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.96209	p.R32070H	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				72	0	0	47	8	14.5455
TTN	0	genome.wustl.edu	37	2	179414715	179414715	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	179414715	179414715	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.84146	p.Q28049R	1.000	superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				47	0	0	38	5	11.6279
TTN	0	genome.wustl.edu	37	2	179590652	179590652	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	179590652	179590652	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.16665	p.R5555	0.231	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				42	0	0	24	6	20
TTN	0	genome.wustl.edu	37	2	179638834	179638834	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	179638834	179638834	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.7061	p.R2354H	1.000	superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				133	1	0.746269	68	18	20.9302
ZNF385B	0	genome.wustl.edu	37	2	180634426	180634426	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	180634426	180634426	C	T	SNP	ZNF385B	ENST00000410066	human	ensembl	74_37	-1	known	silent	c.57	p.R19	0.731	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385B	HGNC	ENSG00000144331				134	0	0	49	14	22.2222
ITGA4	0	genome.wustl.edu	37	2	182374394	182374394	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	182374394	182374394	C	T	SNP	ITGA4	ENST00000397033	human	ensembl	74_37	+1	known	missense	c.1705	p.R569W	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232				117	0	0	50	12	19.3548
NCKAP1	0	genome.wustl.edu	37	2	183860434	183860434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	183860434	183860434	C	T	SNP	NCKAP1	ENST00000360982	human	ensembl	74_37	-1	known	missense	c.754	p.D252N	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676				118	0	0	45	9	16.6667
ENSG00000231689	0	genome.wustl.edu	37	2	189092660	189092660	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	189092660	189092660	C	T	SNP	ENSG00000231689	ENST00000415357	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.084	-	-	-	no_errors	AC068718.1	Clone_based_vega_gene	ENSG00000231689				136	0	0	55	10	15.3846
COL5A2	0	genome.wustl.edu	37	2	189927977	189927977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	189927977	189927977	C	T	SNP	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	missense	c.1790	p.G597D	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262				138	0	0	63	10	13.6986
GTF3C3	0	genome.wustl.edu	37	2	197636657	197636657	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	197636657	197636657	A	G	SNP	GTF3C3	ENST00000263956	human	ensembl	74_37	-1	known	missense	c.2075	p.M692T	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041				116	0	0	46	16	25.8065
ANKRD44	0	genome.wustl.edu	37	2	197986194	197986194	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	197986194	197986194	G	A	SNP	ANKRD44	ENST00000328737	human	ensembl	74_37	-1	known	silent	c.693	p.N231	0.039	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413				72	0	0	40	4	9.09091
RFTN2	0	genome.wustl.edu	37	2	198540105	198540105	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	198540105	198540105	C	T	SNP	RFTN2	ENST00000295049	human	ensembl	74_37	-1	known	silent	c.78	p.P26	0.974	NULL	NULL	-	no_errors	RFTN2	HGNC	ENSG00000162944				254	1	0.392157	110	12	9.83607
KCTD18	0	genome.wustl.edu	37	2	201371662	201371662	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	201371662	201371662	C	T	SNP	KCTD18	ENST00000359878	human	ensembl	74_37	-1	known	silent	c.78	p.R26	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD18	HGNC	ENSG00000155729				97	0	0	35	10	22.2222
BMPR2	0	genome.wustl.edu	37	2	203383560	203383560	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	203383560	203383560	C	T	SNP	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	nonsense	c.637	p.R213*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				75	0	0	43	5	10.4167
FAM117B	0	genome.wustl.edu	37	2	203622015	203622015	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	203622015	203622015	A	C	SNP	FAM117B	ENST00000392238	human	ensembl	74_37	+1	known	missense	c.1184	p.Q395P	1.000	NULL	NULL	-	no_errors	FAM117B	HGNC	ENSG00000138439				111	0	0	44	12	21.4286
CTLA4	0	genome.wustl.edu	37	2	204735367	204735367	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	204735367	204735367	T	A	SNP	CTLA4	ENST00000302823	human	ensembl	74_37	+1	known	missense	c.168	p.F56L	0.986	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,prints_CTLA4	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,prints_CTLA4	-	no_errors	CTLA4	HGNC	ENSG00000163599				174	0	0	74	13	14.9425
PARD3B	0	genome.wustl.edu	37	2	206305302	206305302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	206305302	206305302	C	T	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	missense	c.2950	p.R984W	0.992	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				137	1	0.724638	69	18	20.6897
MAP2	0	genome.wustl.edu	37	2	210560533	210560533	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	210560533	210560533	G	A	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.3639	p.T1213	0.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				86	0	0	26	6	18.75
MAP2	0	genome.wustl.edu	37	2	210574923	210574923	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	210574923	210574923	T	A	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	missense	c.5018	p.V1673D	1.000	pfam_MAP_tubulin-bd_rpt	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				38	0	0	17	4	19.0476
RPE	0	genome.wustl.edu	37	2	210882238	210882238	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	210882238	210882238	G	T	SNP	RPE	ENST00000359429	human	ensembl	74_37	+1	known	missense	c.519	p.E173D	1.000	pfam_Ribul_P_3_epim-like,superfamily_RibuloseP-bd_barrel,tigrfam_Ribul_P_3_epim-like	pfam_Ribul_P_3_epim-like,superfamily_RibuloseP-bd_barrel,tigrfam_Ribul_P_3_epim-like	-	no_errors	RPE	HGNC	ENSG00000197713				138	0	0	46	8	14.8148
TNS1	0	genome.wustl.edu	37	2	218712976	218712976	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	218712976	218712976	G	T	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	missense	c.1889	p.P630H	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				108	0	0	35	8	18.6047
SPEG	0	genome.wustl.edu	37	2	220353375	220353375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	220353375	220353375	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.8014	p.V2672M	0.017	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				83	0	0	32	8	20
INHA	0	genome.wustl.edu	37	2	220439842	220439842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	220439842	220439842	G	A	SNP	INHA	ENST00000243786	human	ensembl	74_37	+1	known	missense	c.695	p.R232H	1.000	pirsf_Inhibin_asu_subgr	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999				82	0	0	38	4	9.52381
SLC4A3	0	genome.wustl.edu	37	2	220494917	220494917	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	220494917	220494917	G	A	SNP	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	silent	c.735	p.E245	1.000	NULL	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				37	0	0	19	7	26.9231
CUL3	0	genome.wustl.edu	37	2	225376167	225376167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	225376167	225376167	C	T	SNP	CUL3	ENST00000264414	human	ensembl	74_37	-1	known	missense	c.787	p.V263M	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257				244	0	0	117	21	15.2174
SP110	0	genome.wustl.edu	37	2	231042288	231042288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	231042288	231042288	C	T	SNP	SP110	ENST00000258381	human	ensembl	74_37	-1	known	missense	c.1556	p.R519H	0.000	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899				589	0	0	232	42	15.3285
GIGYF2	0	genome.wustl.edu	37	2	233715062	233715062	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	233715062	233715062	C	T	SNP	GIGYF2	ENST00000373566	human	ensembl	74_37	+1	known	nonsense	c.3841	p.Q1281*	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120				163	0	0	52	11	17.4603
ANKMY1	0	genome.wustl.edu	37	2	241463633	241463633	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	241463633	241463633	C	T	SNP	ANKMY1	ENST00000272972	human	ensembl	74_37	-1	known	missense	c.1234	p.G412S	0.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504				97	0	0	47	15	24.1935
GPR35	0	genome.wustl.edu	37	2	241570284	241570284	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	241570284	241570284	C	T	SNP	GPR35	ENST00000438013	human	ensembl	74_37	+1	known	silent	c.1008	p.C336	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR35	HGNC	ENSG00000178623				237	0	0	92	24	20.6897
PASK	0	genome.wustl.edu	37	2	242066674	242066674	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	242066674	242066674	T	C	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	silent	c.1656	p.P552	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				391	0	0	118	20	14.4928
MFSD2B	0	genome.wustl.edu	37	2	24247090	24247090	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	24247090	24247090	C	A	SNP	MFSD2B	ENST00000338315	human	ensembl	74_37	+1	known	missense	c.1439	p.S480Y	0.002	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD2B	HGNC	ENSG00000205639				38	0	0	9	3	25
GAL3ST2	0	genome.wustl.edu	37	2	242741267	242741267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	242741267	242741267	G	A	SNP	GAL3ST2	ENST00000192314	human	ensembl	74_37	+1	known	missense	c.191	p.S64N	1.000	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST2	HGNC	ENSG00000154252				126	0	0	48	8	14.2857
LOC101930257	0	genome.wustl.edu	37	2	243056854	243056854	+	RNA	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	243056854	243056854	A	G	SNP	LOC101930257	ENST00000431796	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC093642.5	Clone_based_vega_gene	ENSG00000220804				55	0	0	39	5	11.3636
ITSN2	0	genome.wustl.edu	37	2	24524945	24524945	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	24524945	24524945	C	T	SNP	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	missense	c.884	p.G295E	1.000	smart_EPS15_homology,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				63	0	0	33	5	13.1579
ADCY3	0	genome.wustl.edu	37	2	25042948	25042948	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	25042948	25042948	G	A	SNP	ADCY3	ENST00000260600	human	ensembl	74_37	-1	known	silent	c.3288	p.Y1096	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031				99	0	0	38	4	9.52381
ADCY3	0	genome.wustl.edu	37	2	25061489	25061489	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	25061489	25061489	C	T	SNP	ADCY3	ENST00000260600	human	ensembl	74_37	-1	known	missense	c.1358	p.R453H	0.999	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031				280	0	0	67	14	17.284
DNAJC27	0	genome.wustl.edu	37	2	25194767	25194767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	25194767	25194767	C	T	SNP	DNAJC27	ENST00000264711	human	ensembl	74_37	-1	known	missense	c.7	p.A3T	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_DnaJ_domain,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_DnaJ_domain,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_Small_GTPase,prints_DnaJ_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	DNAJC27	HGNC	ENSG00000115137				32	0	0	11	3	21.4286
CAD	0	genome.wustl.edu	37	2	27458503	27458503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	27458503	27458503	G	A	SNP	CAD	ENST00000264705	human	ensembl	74_37	+1	known	missense	c.4069	p.V1357I	0.964	pfam_MGS-like_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf	-	no_errors	CAD	HGNC	ENSG00000084774				89	0	0	30	15	33.3333
PPM1G	0	genome.wustl.edu	37	2	27608664	27608664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	27608664	27608664	C	T	SNP	PPM1G	ENST00000344034	human	ensembl	74_37	-1	known	missense	c.359	p.R120Q	1.000	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1G	HGNC	ENSG00000115241				86	0	0	52	10	16.129
CLIP4	0	genome.wustl.edu	37	2	29404624	29404624	+	Silent	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	29404624	29404624	C	A	SNP	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	silent	c.1983	p.A661	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295				179	0	0	59	10	14.4928
EHD3	0	genome.wustl.edu	37	2	31489099	31489099	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	31489099	31489099	G	T	SNP	EHD3	ENST00000322054	human	ensembl	74_37	+1	known	silent	c.1137	p.L379	1.000	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD3	HGNC	ENSG00000013016				135	0	0	44	9	16.9811
XDH	0	genome.wustl.edu	37	2	31593290	31593290	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	31593290	31593290	G	A	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	silent	c.1911	p.S637	0.014	pfam_Ald_Oxase/Xan_DH_a/b,superfamily_Ald_Oxase/Xan_DH_a/b,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125				78	0	0	32	9	21.9512
LTBP1	0	genome.wustl.edu	37	2	33572473	33572473	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	33572473	33572473	A	G	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	missense	c.3899	p.E1300G	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				125	0	0	60	6	9.09091
COLEC11	0	genome.wustl.edu	37	2	3673649	3673649	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	3673649	3673649	T	C	SNP	COLEC11	ENST00000236693	human	ensembl	74_37	+1	known	missense	c.160	p.C54R	0.000	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	COLEC11	HGNC	ENSG00000118004				293	0	0	129	22	14.5695
CYP1B1	0	genome.wustl.edu	37	2	38298187	38298187	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	38298187	38298187	G	A	SNP	CYP1B1	ENST00000260630	human	ensembl	74_37	-1	known	missense	c.1310	p.P437L	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1B1	HGNC	ENSG00000138061				93	0	0	30	10	25
SLC8A1	0	genome.wustl.edu	37	2	40656427	40656427	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	40656427	40656427	C	A	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	nonsense	c.994	p.E332*	1.000	pfscan_DnaJ_domain,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				182	0	0	116	23	16.5468
ENSG00000251942	0	genome.wustl.edu	37	2	53697618	53697618	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	53697618	53697618	G	A	SNP	ENSG00000251942	ENST00000516133	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.379	-	-	-	no_errors	SCARNA16	RFAM	ENSG00000251942				35	0	0	4	3	42.8571
EFEMP1	0	genome.wustl.edu	37	2	56098186	56098186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	56098186	56098186	C	T	SNP	EFEMP1	ENST00000355426	human	ensembl	74_37	-1	known	missense	c.1073	p.R358H	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380				99	0	0	44	12	21.4286
XPO1	0	genome.wustl.edu	37	2	61709583	61709583	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	61709583	61709583	A	G	SNP	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	silent	c.2904	p.V968	0.998	pfam_CRM1_C_dom,superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898				147	0	0	52	10	16.129
ETAA1	0	genome.wustl.edu	37	2	67629950	67629950	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	67629950	67629950	C	T	SNP	ETAA1	ENST00000462772	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ETAA1	HGNC	ENSG00000143971				94	0	0	43	7	14
AAK1	0	genome.wustl.edu	37	2	69732777	69732777	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	69732777	69732777	T	C	SNP	AAK1	ENST00000409085	human	ensembl	74_37	-1	known	silent	c.2193	p.S731	0.987	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AAK1	HGNC	ENSG00000115977				63	0	0	25	5	16.6667
ZNF638	0	genome.wustl.edu	37	2	71576635	71576635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	71576635	71576635	G	A	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	missense	c.551	p.R184H	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				96	0	0	45	9	16.6667
EVA1A	0	genome.wustl.edu	37	2	75720679	75720679	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	75720679	75720679	G	A	SNP	EVA1A	ENST00000233712	human	ensembl	74_37	-1	known	silent	c.142	p.L48	1.000	NULL	NULL	-	no_errors	EVA1A	HGNC	ENSG00000115363				50	0	0	13	4	23.5294
LRRTM4	0	genome.wustl.edu	37	2	77746720	77746720	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	77746720	77746720	A	C	SNP	LRRTM4	ENST00000409911	human	ensembl	74_37	-1	known	missense	c.278	p.L93R	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204				118	0	0	58	12	17.1429
CTNNA2	0	genome.wustl.edu	37	2	80101447	80101447	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	80101447	80101447	T	C	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	silent	c.933	p.A311	0.995	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				100	0	0	39	4	9.30233
USP39	0	genome.wustl.edu	37	2	85846392	85846392	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	85846392	85846392	G	A	SNP	USP39	ENST00000409470	human	ensembl	74_37	+1	known	silent	c.318	p.P106	0.018	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP39	HGNC	ENSG00000168883				46	0	0	16	6	27.2727
SNPH	0	genome.wustl.edu	37	20	1285978	1285978	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	1285978	1285978	G	A	SNP	SNPH	ENST00000381867	human	ensembl	74_37	+1	known	silent	c.897	p.T299	1.000	NULL	NULL	-	no_errors	SNPH	HGNC	ENSG00000101298				109	0	0	33	4	10.8108
RRBP1	0	genome.wustl.edu	37	20	17641004	17641004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	17641004	17641004	G	A	SNP	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	missense	c.149	p.A50V	0.993	pfam_Rib_rcpt_KP	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844				49	0	0	25	9	26.4706
CD93	0	genome.wustl.edu	37	20	23066077	23066077	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	23066077	23066077	G	A	SNP	CD93	ENST00000246006	human	ensembl	74_37	-1	known	silent	c.753	p.G251	0.007	pirsf_CD93/CD141	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				243	0	0	102	24	19.0476
GZF1	0	genome.wustl.edu	37	20	23350271	23350271	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	23350271	23350271	A	G	SNP	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	missense	c.1678	p.N560D	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				225	0	0	88	20	18.5185
NINL	0	genome.wustl.edu	37	20	25507059	25507059	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	25507059	25507059	G	A	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	silent	c.165	p.N55	0.002	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				392	0	0	137	18	11.6129
CBFA2T2	0	genome.wustl.edu	37	20	32232206	32232206	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	32232206	32232206	C	T	SNP	CBFA2T2	ENST00000346541	human	ensembl	74_37	+1	known	silent	c.1569	p.I523	0.988	pfam_Znf_MYND,pfscan_Znf_MYND,prints_ETO	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1	-	no_errors	CBFA2T2	HGNC	ENSG00000078699				173	0	0	61	9	12.8571
RALY	0	genome.wustl.edu	37	20	32663747	32663747	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	32663747	32663747	C	T	SNP	RALY	ENST00000246194	human	ensembl	74_37	+1	known	missense	c.445	p.R149W	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970				65	0	0	29	12	29.2683
C20orf194	0	genome.wustl.edu	37	20	3277379	3277379	+	RNA	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	3277379	3277379	C	A	SNP	C20orf194	ENST00000498079	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.871	-	-	-	no_errors	C20orf194	HGNC	ENSG00000088854				79	0	0	44	8	15.3846
ERGIC3	0	genome.wustl.edu	37	20	34144790	34144790	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	34144790	34144790	C	T	SNP	ERGIC3	ENST00000447986	human	ensembl	74_37	+1	known	missense	c.971	p.A324V	1.000	pfam_Erv_C	pfam_Erv_C	-	no_errors	ERGIC3	HGNC	ENSG00000125991				58	0	0	28	3	9.67742
ADAM33	0	genome.wustl.edu	37	20	3653445	3653445	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	3653445	3653445	C	T	SNP	ADAM33	ENST00000356518	human	ensembl	74_37	-1	known	missense	c.1234	p.G412R	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451				41	0	0	14	4	22.2222
SNORA71B	0	genome.wustl.edu	37	20	37053897	37053897	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	37053897	37053897	G	A	SNP	SNORA71B	ENST00000364546	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORA71B	HGNC	ENSG00000235408				219	0	0	68	11	13.9241
RALGAPB	0	genome.wustl.edu	37	20	37203485	37203485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	37203485	37203485	C	T	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.4360	p.P1454S	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				184	0	0	64	19	22.8916
PTPRT	0	genome.wustl.edu	37	20	40980779	40980779	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	40980779	40980779	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	silent	c.1707	p.S569	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				178	1	0.558659	57	13	18.5714
OSER1	0	genome.wustl.edu	37	20	42825844	42825844	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	42825844	42825844	C	T	SNP	OSER1	ENST00000255174	human	ensembl	74_37	-1	known	missense	c.727	p.A243T	0.041	NULL	pfam_DUF776	-	no_errors	OSER1	HGNC	ENSG00000132823				118	0	0	55	18	24.6575
RBPJL	0	genome.wustl.edu	37	20	43938299	43938299	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	43938299	43938299	A	C	SNP	RBPJL	ENST00000343694	human	ensembl	74_37	+1	known	missense	c.224	p.K75T	1.000	pfam_LAG1_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJL	HGNC	ENSG00000124232				84	0	0	19	5	20.8333
PLTP	0	genome.wustl.edu	37	20	44530909	44530909	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	44530909	44530909	C	T	SNP	PLTP	ENST00000542937	human	ensembl	74_37	-1	known	missense	c.1232	p.R411H	0.998	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	PLTP	HGNC	ENSG00000100979				47	0	0	30	3	9.09091
ZNF334	0	genome.wustl.edu	37	20	45130815	45130815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	45130815	45130815	C	T	SNP	ZNF334	ENST00000347606	human	ensembl	74_37	-1	known	missense	c.1163	p.C388Y	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185				247	0	0	111	23	17.1642
ZNF334	0	genome.wustl.edu	37	20	45131154	45131154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	45131154	45131154	C	T	SNP	ZNF334	ENST00000347606	human	ensembl	74_37	-1	known	missense	c.824	p.R275H	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185				203	0	0	95	17	15.1786
BCAS1	0	genome.wustl.edu	37	20	52645217	52645217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	52645217	52645217	G	A	SNP	BCAS1	ENST00000371440	human	ensembl	74_37	-1	known	missense	c.437	p.P146L	0.000	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787				114	0	0	59	4	6.34921
MC3R	0	genome.wustl.edu	37	20	54824345	54824345	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	54824345	54824345	C	T	SNP	MC3R	ENST00000243911	human	ensembl	74_37	+1	known	missense	c.446	p.A149V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_3_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC3R	HGNC	ENSG00000124089				181	0	0	71	14	16.4706
TUBB1	0	genome.wustl.edu	37	20	57597953	57597953	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	57597953	57597953	C	T	SNP	TUBB1	ENST00000217133	human	ensembl	74_37	+1	known	silent	c.111	p.R37	0.002	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162				77	0	0	35	12	25.5319
MCM8	0	genome.wustl.edu	37	20	5974312	5974312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	5974312	5974312	C	T	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	missense	c.2521	p.R841W	1.000	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				111	0	0	47	6	11.3208
CRLS1	0	genome.wustl.edu	37	20	6012658	6012658	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	6012658	6012658	C	T	SNP	CRLS1	ENST00000378863	human	ensembl	74_37	+1	known	nonsense	c.661	p.R221*	0.991	NULL	pfam_CDP-OH_P_trans	-	no_errors	CRLS1	HGNC	ENSG00000088766				147	0	0	94	9	8.73786
LAMA5	0	genome.wustl.edu	37	20	60890152	60890152	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	60890152	60890152	C	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.7979	p.W2660L	1.000	pfam_Laminin_II	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				41	0	0	21	8	27.5862
DIDO1	0	genome.wustl.edu	37	20	61513091	61513091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	61513091	61513091	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.4217	p.R1406Q	0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				194	0	0	79	21	21
HELZ2	0	genome.wustl.edu	37	20	62195518	62195518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	62195518	62195518	G	A	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.4657	p.R1553W	0.973	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				44	0	0	9	2	18.1818
HELZ2	0	genome.wustl.edu	37	20	62196357	62196357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	62196357	62196357	C	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.3818	p.R1273Q	0.674	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				20	0	0	5	3	37.5
PCMTD2	0	genome.wustl.edu	37	20	62904787	62904787	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	62904787	62904787	A	G	SNP	PCMTD2	ENST00000308824	human	ensembl	74_37	+1	known	missense	c.920	p.D307G	0.990	NULL	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880				217	0	0	85	8	8.60215
SLC52A3	0	genome.wustl.edu	37	20	744159	744159	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	744159	744159	G	A	SNP	SLC52A3	ENST00000217254	human	ensembl	74_37	-1	known	silent	c.1056	p.S352	1.000	pfam_Endogenous_retrovirus_rcpt	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A3	HGNC	ENSG00000101276				112	1	0.884956	35	6	14.6341
TPTE	0	genome.wustl.edu	37	21	10914434	10914434	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	10914434	10914434	G	A	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	missense	c.1285	p.R429C	0.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				65	0	0	42	5	10.6383
TMPRSS15	0	genome.wustl.edu	37	21	19666643	19666643	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	19666643	19666643	G	A	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	silent	c.2430	p.C810	0.954	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				199	0	0	72	17	19.1011
TMPRSS15	0	genome.wustl.edu	37	21	19737468	19737468	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	19737468	19737468	C	T	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	silent	c.762	p.Q254	0.998	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				179	0	0	72	9	11.1111
NCAM2	0	genome.wustl.edu	37	21	22881276	22881276	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	22881276	22881276	C	T	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	nonsense	c.2182	p.Q728*	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				152	0	0	55	5	8.33333
RWDD2B	0	genome.wustl.edu	37	21	30380391	30380391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	30380391	30380391	G	A	SNP	RWDD2B	ENST00000493196	human	ensembl	74_37	-1	known	missense	c.416	p.A139V	0.021	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	pfam_DUF1115,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	-	no_errors	RWDD2B	HGNC	ENSG00000156253				65	0	0	53	15	22.0588
SON	0	genome.wustl.edu	37	21	34923165	34923165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	34923165	34923165	C	T	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	missense	c.1628	p.T543M	0.810	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				235	0	0	99	21	17.5
DOPEY2	0	genome.wustl.edu	37	21	37617398	37617398	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	37617398	37617398	C	T	SNP	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	silent	c.3120	p.C1040	0.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				51	0	0	23	3	11.5385
HLCS	0	genome.wustl.edu	37	21	38269298	38269298	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	38269298	38269298	G	T	SNP	HLCS	ENST00000336648	human	ensembl	74_37	-1	known	missense	c.1313	p.P438H	0.976	NULL	pfam_BPL_LipA_LipB,pfam_BPL_C,tigrfam_Biotin_CoA_COase_ligase	-	no_errors	HLCS	HGNC	ENSG00000159267				180	0	0	98	17	14.7826
DSCR3	0	genome.wustl.edu	37	21	38610677	38610677	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	38610677	38610677	G	A	SNP	DSCR3	ENST00000492514	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	DSCR3	HGNC	ENSG00000157538				47	0	0	19	9	32.1429
DSCAM	0	genome.wustl.edu	37	21	41385265	41385265	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	41385265	41385265	T	C	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.5735	p.N1912S	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				110	0	0	45	5	10
MX1	0	genome.wustl.edu	37	21	42813706	42813706	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	42813706	42813706	G	T	SNP	MX1	ENST00000398598	human	ensembl	74_37	+1	known	missense	c.794	p.R265L	0.001	pfam_Dynamin_central,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,prints_Dynamin_SF	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_GED,prints_Dynamin_SF	-	no_errors	MX1	HGNC	ENSG00000157601				182	1	0.546448	90	5	5.26316
U2AF1	0	genome.wustl.edu	37	21	44515560	44515560	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	44515560	44515560	G	A	SNP	U2AF1	ENST00000291552	human	ensembl	74_37	-1	known	silent	c.336	p.N112	0.810	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_U2_small	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_U2_small	-	no_errors	U2AF1	HGNC	ENSG00000160201				192	1	0.518135	90	18	16.6667
PWP2	0	genome.wustl.edu	37	21	45546795	45546795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	45546795	45546795	C	T	SNP	PWP2	ENST00000291576	human	ensembl	74_37	+1	known	missense	c.2089	p.R697W	1.000	smart_WD40_repeat	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP2	HGNC	ENSG00000241945				317	0	0	110	26	19.1176
KRTAP10-9	0	genome.wustl.edu	37	21	46047097	46047097	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	46047097	46047097	G	A	SNP	KRTAP10-9	ENST00000397911	human	ensembl	74_37	+1	known	silent	c.9	p.A3	0.011	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837				205	0	0	66	14	17.5
ITGB2	0	genome.wustl.edu	37	21	46308785	46308785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	46308785	46308785	C	T	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	missense	c.1903	p.E635K	0.318	pirsf_Integrin_bsu,pfam_Integrin_bsu_tail,superfamily_Integrin_bsu_tail	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255				86	0	0	26	9	25.7143
PRMT2	0	genome.wustl.edu	37	21	48083413	48083413	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	48083413	48083413	T	C	SNP	PRMT2	ENST00000355680	human	ensembl	74_37	+1	known	missense	c.1216	p.S406P	1.000	NULL	pfam_SH3_domain,pfam_Arg_MeTrfase,pfam_SH3_2,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_Trfase_Trm5/Tyw2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PRMT2	HGNC	ENSG00000160310				93	0	0	57	4	6.55738
IL17RA	0	genome.wustl.edu	37	22	17590340	17590340	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	17590340	17590340	T	C	SNP	IL17RA	ENST00000319363	human	ensembl	74_37	+1	known	missense	c.2231	p.V744A	0.000	NULL	pfam_SEFIR	-	no_errors	IL17RA	HGNC	ENSG00000177663				41	0	0	28	4	12.5
DGCR2	0	genome.wustl.edu	37	22	19050715	19050715	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	19050715	19050715	C	A	SNP	DGCR2	ENST00000263196	human	ensembl	74_37	-1	known	missense	c.625	p.G209C	1.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,smart_VWF_C,pfscan_LDrepeatLR_classA_rpt,pfscan_C-type_lectin	-	no_errors	DGCR2	HGNC	ENSG00000070413				62	0	0	22	3	12
PPIL2	0	genome.wustl.edu	37	22	22024875	22024875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	22024875	22024875	C	T	SNP	PPIL2	ENST00000412327	human	ensembl	74_37	+1	known	missense	c.103	p.R35C	1.000	pfam_Rtf2_RING-finger	pfam_Cyclophilin-like_PPIase_dom,pfam_Rtf2_RING-finger,superfamily_Cyclophilin-like_PPIase_dom,smart_Ubox_domain,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL2	HGNC	ENSG00000100023				204	1	0.487805	77	18	18.9474
PRAME	0	genome.wustl.edu	37	22	22892556	22892556	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	22892556	22892556	A	G	SNP	PRAME	ENST00000398741	human	ensembl	74_37	-1	known	missense	c.545	p.F182S	0.001	NULL	NULL	-	no_errors	PRAME	HGNC	ENSG00000185686				204	0	0	89	16	15.2381
BCR	0	genome.wustl.edu	37	22	23540479	23540479	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	23540479	23540479	C	T	SNP	BCR	ENST00000463770	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	BCR	HGNC	ENSG00000186716				272	0	0	113	20	15.0376
GGT1	0	genome.wustl.edu	37	22	25010758	25010758	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	25010758	25010758	C	T	SNP	GGT1	ENST00000248923	human	ensembl	74_37	+1	known	silent	c.180	p.D60	0.527	pfam_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031				152	0	0	49	7	12.5
MN1	0	genome.wustl.edu	37	22	28195359	28195359	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	28195359	28195359	G	A	SNP	MN1	ENST00000302326	human	ensembl	74_37	-1	known	silent	c.1173	p.G391	0.995	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184				21	0	0	9	4	30.7692
ASCC2	0	genome.wustl.edu	37	22	30210653	30210653	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	30210653	30210653	G	T	SNP	ASCC2	ENST00000307790	human	ensembl	74_37	-1	known	missense	c.713	p.P238H	1.000	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325				64	0	0	28	5	15.1515
PES1	0	genome.wustl.edu	37	22	30977552	30977552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	30977552	30977552	C	T	SNP	PES1	ENST00000354694	human	ensembl	74_37	-1	known	missense	c.710	p.R237H	1.000	pfam_Pescadillo	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029				76	0	0	19	7	26.9231
INPP5J	0	genome.wustl.edu	37	22	31522407	31522407	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	31522407	31522407	C	T	SNP	INPP5J	ENST00000331075	human	ensembl	74_37	+1	known	silent	c.1317	p.D439	0.162	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133				286	0	0	121	22	15.3846
SFI1	0	genome.wustl.edu	37	22	32002324	32002324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	32002324	32002324	C	T	SNP	SFI1	ENST00000400288	human	ensembl	74_37	+1	known	missense	c.2065	p.R689C	0.038	superfamily_Cyclin-like	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089				81	0	0	42	4	8.69565
DEPDC5	0	genome.wustl.edu	37	22	32210985	32210985	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	32210985	32210985	C	T	SNP	DEPDC5	ENST00000266091	human	ensembl	74_37	+1	known	nonsense	c.1453	p.R485*	1.000	NULL	pfam_IML1,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150				152	1	0.653595	53	14	20.8955
HMGXB4	0	genome.wustl.edu	37	22	35660704	35660704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	35660704	35660704	C	T	SNP	HMGXB4	ENST00000216106	human	ensembl	74_37	+1	known	missense	c.323	p.T108I	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGXB4	HGNC	ENSG00000100281				296	0	0	125	9	6.71642
APOL2	0	genome.wustl.edu	37	22	36624092	36624092	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	36624092	36624092	G	A	SNP	APOL2	ENST00000249066	human	ensembl	74_37	-1	known	silent	c.372	p.G124	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL2	HGNC	ENSG00000128335				109	0	0	54	11	16.9231
ELFN2	0	genome.wustl.edu	37	22	37771205	37771205	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	37771205	37771205	G	A	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	nonsense	c.370	p.R124*	1.000	smart_Leu-rich_rpt_typical-subtyp	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				150	0	0	67	8	10.6667
CARD10	0	genome.wustl.edu	37	22	37914056	37914056	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	37914056	37914056	C	G	SNP	CARD10	ENST00000251973	human	ensembl	74_37	-1	known	missense	c.295	p.A99P	0.671	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065				103	0	0	32	3	8.57143
KCNJ4	0	genome.wustl.edu	37	22	38823343	38823343	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	38823343	38823343	G	A	SNP	KCNJ4	ENST00000303592	human	ensembl	74_37	-1	known	silent	c.795	p.I265	0.940	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.3	-	no_errors	KCNJ4	HGNC	ENSG00000168135				78	0	0	40	8	16.6667
APOBEC3B	0	genome.wustl.edu	37	22	39388072	39388072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	39388072	39388072	G	A	SNP	APOBEC3B	ENST00000333467	human	ensembl	74_37	+1	known	missense	c.1052	p.R351H	0.044	pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3B	HGNC	ENSG00000179750				68	0	0	22	5	18.5185
ST13	0	genome.wustl.edu	37	22	41222545	41222545	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	41222545	41222545	C	T	SNP	ST13	ENST00000216218	human	ensembl	74_37	-1	known	silent	c.1107	p.A369	0.968	NULL	pfam_TPR_1,smart_TPR_repeat,smart_STI1_HS-bd,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ST13	HGNC	ENSG00000100380				330	0	0	129	24	15.6863
TEF	0	genome.wustl.edu	37	22	41790186	41790186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	41790186	41790186	G	A	SNP	TEF	ENST00000266304	human	ensembl	74_37	+1	known	missense	c.562	p.A188T	1.000	NULL	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	TEF	HGNC	ENSG00000167074				227	2	0.873362	80	16	16.6667
TOB2	0	genome.wustl.edu	37	22	41833202	41833202	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	41833202	41833202	G	A	SNP	TOB2	ENST00000327492	human	ensembl	74_37	-1	known	silent	c.148	p.L50	0.784	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	pfam_Anti_prolifrtn,pfam_Ataxin-2_C,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	TOB2	HGNC	ENSG00000183864				83	0	0	36	6	14.2857
MCAT	0	genome.wustl.edu	37	22	43529111	43529111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	43529111	43529111	C	T	SNP	MCAT	ENST00000290429	human	ensembl	74_37	-1	known	missense	c.1111	p.A371T	0.003	smart_PKS_acyl_transferase	pfam_Acyl_transferase,superfamily_Acyl_Trfase/lysoPLipase,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_acyl_transferase	-	no_errors	MCAT	HGNC	ENSG00000100294				286	0	0	101	31	23.4848
TTLL12	0	genome.wustl.edu	37	22	43576904	43576904	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	43576904	43576904	G	A	SNP	TTLL12	ENST00000216129	human	ensembl	74_37	-1	known	silent	c.390	p.H130	0.041	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL12	HGNC	ENSG00000100304				92	0	0	49	5	9.25926
SCUBE1	0	genome.wustl.edu	37	22	43619155	43619155	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	43619155	43619155	G	A	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	silent	c.1275	p.G425	0.055	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				277	0	0	119	28	19.0476
EFCAB6	0	genome.wustl.edu	37	22	44031028	44031028	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	44031028	44031028	G	A	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	silent	c.2052	p.F684	0.000	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				131	0	0	51	4	7.27273
SAMM50	0	genome.wustl.edu	37	22	44368144	44368144	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	44368144	44368144	C	T	SNP	SAMM50	ENST00000350028	human	ensembl	74_37	+1	known	silent	c.351	p.D117	0.586	NULL	pfam_Bac_surfAg_D15	-	no_errors	SAMM50	HGNC	ENSG00000100347				104	0	0	43	9	17.3077
GRAMD4	0	genome.wustl.edu	37	22	47033823	47033823	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	47033823	47033823	C	A	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	missense	c.249	p.H83Q	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240				236	0	0	93	16	14.6789
CRELD2	0	genome.wustl.edu	37	22	50318101	50318101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	50318101	50318101	C	T	SNP	CRELD2	ENST00000404488	human	ensembl	74_37	+1	known	missense	c.1013	p.A338V	0.468	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pfam_DUF3456,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_Furin_repeat,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	CRELD2	HGNC	ENSG00000184164				27	0	0	11	3	21.4286
TRABD	0	genome.wustl.edu	37	22	50635771	50635771	+	Silent	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	50635771	50635771	C	A	SNP	TRABD	ENST00000303434	human	ensembl	74_37	+1	known	silent	c.522	p.A174	1.000	pfam_Pheromone_shutdown_TraB	pfam_Pheromone_shutdown_TraB	-	no_errors	TRABD	HGNC	ENSG00000170638				139	0	0	56	12	17.6471
SBF1	0	genome.wustl.edu	37	22	50892961	50892961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	50892961	50892961	C	T	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.5023	p.A1675T	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				135	0	0	53	12	18.4615
SHANK3	0	genome.wustl.edu	37	22	51160524	51160524	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	51160524	51160524	G	A	SNP	SHANK3	ENST00000262795	human	ensembl	74_37	+1	known	silent	c.4311	p.P1437	1.000	NULL	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322				41	0	0	22	6	21.4286
NIT2	0	genome.wustl.edu	37	3	100065064	100065064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	100065064	100065064	G	A	SNP	NIT2	ENST00000394140	human	ensembl	74_37	+1	known	missense	c.470	p.R157Q	1.000	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	NIT2	HGNC	ENSG00000114021				72	0	0	22	3	12
POGLUT1	0	genome.wustl.edu	37	3	119209485	119209485	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	119209485	119209485	T	C	SNP	POGLUT1	ENST00000295588	human	ensembl	74_37	+1	known	silent	c.885	p.D295	0.013	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,smart_LipoPS_modifying	-	no_errors	POGLUT1	HGNC	ENSG00000163389				221	0	0	122	15	10.9489
ILDR1	0	genome.wustl.edu	37	3	121712299	121712299	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	121712299	121712299	G	A	SNP	ILDR1	ENST00000344209	human	ensembl	74_37	-1	known	missense	c.1297	p.R433W	0.000	NULL	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR1	HGNC	ENSG00000145103				32	0	0	12	5	29.4118
ILDR1	0	genome.wustl.edu	37	3	121720675	121720675	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	121720675	121720675	T	C	SNP	ILDR1	ENST00000344209	human	ensembl	74_37	-1	known	missense	c.416	p.D139G	1.000	smart_Ig_sub	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR1	HGNC	ENSG00000145103				135	0	0	51	15	22.7273
ADCY5	0	genome.wustl.edu	37	3	123021992	123021992	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	123021992	123021992	C	T	SNP	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	silent	c.2634	p.A878	0.075	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				80	0	0	37	7	15.9091
MYLK	0	genome.wustl.edu	37	3	123419658	123419658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	123419658	123419658	G	A	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.2657	p.A886V	0.141	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				174	0	0	48	10	17.2414
RAF1	0	genome.wustl.edu	37	3	12645699	12645699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	12645699	12645699	G	A	SNP	RAF1	ENST00000442415	human	ensembl	74_37	-1	known	missense	c.770	p.S257L	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	RAF1	HGNC	ENSG00000132155				124	0	0	52	12	18.75
SEC61A1	0	genome.wustl.edu	37	3	127779411	127779411	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	127779411	127779411	C	A	SNP	SEC61A1	ENST00000243253	human	ensembl	74_37	+1	known	missense	c.523	p.L175I	1.000	pfam_SecY/SEC61-alpha,superfamily_SecY_su_dom,pirsf_SecY/SEC61-alpha,tigrfam_SecY/SEC61-alpha	pfam_SecY/SEC61-alpha,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY/SEC61-alpha,tigrfam_SecY/SEC61-alpha	-	no_errors	SEC61A1	HGNC	ENSG00000058262				186	0	0	80	8	9.09091
SEC61A1	0	genome.wustl.edu	37	3	127788654	127788654	+	RNA	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	127788654	127788654	A	G	SNP	SEC61A1	ENST00000483956	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	SEC61A1	HGNC	ENSG00000058262				11	0	0	2	2	50
TMEM40	0	genome.wustl.edu	37	3	12790209	12790209	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	12790209	12790209	G	A	SNP	TMEM40	ENST00000431022	human	ensembl	74_37	-1	known	silent	c.204	p.S68	0.003	NULL	NULL	-	no_errors	TMEM40	HGNC	ENSG00000088726				376	1	0.265252	150	25	14.2857
TMCC1	0	genome.wustl.edu	37	3	129389363	129389363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	129389363	129389363	C	T	SNP	TMCC1	ENST00000393238	human	ensembl	74_37	-1	known	missense	c.1321	p.A441T	0.865	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765				128	0	0	79	5	5.95238
CPNE4	0	genome.wustl.edu	37	3	131293941	131293941	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	131293941	131293941	T	C	SNP	CPNE4	ENST00000502818	human	ensembl	74_37	-1	known	missense	c.955	p.M319V	1.000	NULL	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE4	HGNC	ENSG00000196353				146	0	0	59	9	13.2353
SLCO2A1	0	genome.wustl.edu	37	3	133661493	133661493	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	133661493	133661493	C	T	SNP	SLCO2A1	ENST00000310926	human	ensembl	74_37	-1	known	silent	c.1581	p.L527	0.998	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640				99	0	0	50	7	12.2807
GRK7	0	genome.wustl.edu	37	3	141497441	141497441	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	141497441	141497441	G	A	SNP	GRK7	ENST00000264952	human	ensembl	74_37	+1	known	silent	c.315	p.A105	0.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK7	HGNC	ENSG00000114124				76	0	0	26	6	18.75
PLSCR4	0	genome.wustl.edu	37	3	145917640	145917640	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	145917640	145917640	C	T	SNP	PLSCR4	ENST00000354952	human	ensembl	74_37	-1	known	missense	c.584	p.C195Y	1.000	pfam_Scramblase	pfam_Scramblase	-	no_errors	PLSCR4	HGNC	ENSG00000114698				59	0	0	29	6	17.1429
ZIC1	0	genome.wustl.edu	37	3	147128485	147128485	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	147128485	147128485	G	A	SNP	ZIC1	ENST00000282928	human	ensembl	74_37	+1	known	missense	c.586	p.G196S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC1	HGNC	ENSG00000152977				100	0	0	38	7	15.5556
FAM194A	0	genome.wustl.edu	37	3	150398595	150398595	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	150398595	150398595	G	A	SNP	FAM194A	ENST00000295910	human	ensembl	74_37	-1	known	silent	c.1005	p.V335	0.000	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645				157	0	0	79	9	10.2273
IGSF10	0	genome.wustl.edu	37	3	151174864	151174864	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	151174864	151174864	C	A	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.274	p.G92C	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				104	0	0	59	12	16.9014
ACTRT3	0	genome.wustl.edu	37	3	169485486	169485486	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	169485486	169485486	C	A	SNP	ACTRT3	ENST00000330368	human	ensembl	74_37	-1	known	missense	c.853	p.G285C	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT3	HGNC	ENSG00000184378				232	0	0	103	21	16.9355
CLDN11	0	genome.wustl.edu	37	3	170185173	170185173	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	170185173	170185173	G	A	SNP	CLDN11	ENST00000480067	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CLDN11	HGNC	ENSG00000013297				56	0	0	17	5	22.7273
PIK3CA	0	genome.wustl.edu	37	3	178952084	178952084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	178952084	178952084	C	T	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.3139	p.H1047Y	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				122	0	0	74	11	12.9412
FAM131A	0	genome.wustl.edu	37	3	184059734	184059734	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	184059734	184059734	G	A	SNP	FAM131A	ENST00000310585	human	ensembl	74_37	+1	known	missense	c.113	p.S38N	0.000	NULL	NULL	-	no_errors	FAM131A	HGNC	ENSG00000175182				247	0	0	123	20	13.986
HRG	0	genome.wustl.edu	37	3	186390618	186390618	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	186390618	186390618	C	T	SNP	HRG	ENST00000232003	human	ensembl	74_37	+1	known	missense	c.601	p.R201W	0.968	smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	HRG	HGNC	ENSG00000113905				96	0	0	42	8	16
ENSG00000263826	0	genome.wustl.edu	37	3	186501291	186501291	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	186501291	186501291	C	T	SNP	ENSG00000263826	ENST00000577781	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-573D15.9	Clone_based_vega_gene	ENSG00000263826				38	0	0	21	8	27.5862
BCL6	0	genome.wustl.edu	37	3	187444578	187444578	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	187444578	187444578	C	T	SNP	BCL6	ENST00000232014	human	ensembl	74_37	-1	known	missense	c.1649	p.R550H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6	HGNC	ENSG00000113916				148	0	0	75	11	12.7907
TCTEX1D2	0	genome.wustl.edu	37	3	196043062	196043062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	196043062	196043062	G	A	SNP	TCTEX1D2	ENST00000325318	human	ensembl	74_37	-1	known	missense	c.154	p.L52F	1.000	pfam_Tctex	pfam_Tctex	-	no_errors	TCTEX1D2	HGNC	ENSG00000213123				79	0	0	34	4	10.5263
EFHB	0	genome.wustl.edu	37	3	19975208	19975208	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	19975208	19975208	T	G	SNP	EFHB	ENST00000295824	human	ensembl	74_37	-1	known	missense	c.303	p.K101N	0.007	NULL	pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFHB	HGNC	ENSG00000163576				249	0	0	95	13	12.037
RBMS3	0	genome.wustl.edu	37	3	29925682	29925682	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	29925682	29925682	A	G	SNP	RBMS3	ENST00000383767	human	ensembl	74_37	+1	known	silent	c.774	p.T258	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS3	HGNC	ENSG00000144642				89	0	0	44	5	10.2041
FBXL2	0	genome.wustl.edu	37	3	33427168	33427168	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	33427168	33427168	C	T	SNP	FBXL2	ENST00000283627	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FBXL2	HGNC	ENSG00000153558				36	0	0	39	5	11.3636
SLC22A14	0	genome.wustl.edu	37	3	38357085	38357085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	38357085	38357085	C	T	SNP	SLC22A14	ENST00000273173	human	ensembl	74_37	+1	known	missense	c.1415	p.P472L	0.001	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A14	HGNC	ENSG00000144671				145	0	0	52	8	13.3333
TRAK1	0	genome.wustl.edu	37	3	42236371	42236371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	42236371	42236371	C	T	SNP	TRAK1	ENST00000396175	human	ensembl	74_37	+1	known	missense	c.877	p.R293W	0.926	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606				45	0	0	21	2	8.69565
EXOSC7	0	genome.wustl.edu	37	3	45038709	45038709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	45038709	45038709	C	T	SNP	EXOSC7	ENST00000265564	human	ensembl	74_37	+1	known	missense	c.385	p.R129W	0.489	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC7	HGNC	ENSG00000075914				103	0	0	43	8	15.6863
SACM1L	0	genome.wustl.edu	37	3	45780148	45780148	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	45780148	45780148	C	T	SNP	SACM1L	ENST00000389061	human	ensembl	74_37	+1	known	silent	c.1461	p.S487	0.934	NULL	pfam_Syja_N,pfscan_Syja_N	-	no_errors	SACM1L	HGNC	ENSG00000211456				77	0	0	54	8	12.9032
CCR2	0	genome.wustl.edu	37	3	46399158	46399158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	46399158	46399158	C	T	SNP	CCR2	ENST00000292301	human	ensembl	74_37	+1	known	missense	c.140	p.P47L	0.019	prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807				163	0	0	112	25	18.2482
CCR5	0	genome.wustl.edu	37	3	46415343	46415343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	46415343	46415343	C	T	SNP	CCR5	ENST00000292303	human	ensembl	74_37	+1	known	missense	c.950	p.A317V	0.140	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_rcpt,prints_GPCR_Rhodpsn,prints_Chemokine_CCR5,prints_Chemokine_CCR1,prints_ATII_rcpt	-	no_errors	CCR5	HGNC	ENSG00000160791				244	0	0	128	41	24.2604
COL7A1	0	genome.wustl.edu	37	3	48622168	48622168	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	48622168	48622168	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.4046	p.P1349L	1.000	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				95	0	0	40	6	13.0435
CELSR3	0	genome.wustl.edu	37	3	48677486	48677486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	48677486	48677486	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.9547	p.R3183W	0.940	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				41	0	0	18	8	30.7692
DALRD3	0	genome.wustl.edu	37	3	49053239	49053239	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	49053239	49053239	C	A	SNP	DALRD3	ENST00000341949	human	ensembl	74_37	-1	known	missense	c.1510	p.G504W	1.000	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	-	no_errors	DALRD3	HGNC	ENSG00000178149				204	0	0	83	15	15.3061
KLHDC8B	0	genome.wustl.edu	37	3	49212303	49212303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	49212303	49212303	G	A	SNP	KLHDC8B	ENST00000332780	human	ensembl	74_37	+1	known	missense	c.670	p.V224I	0.776	pfam_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC8B	HGNC	ENSG00000185909				120	0	0	44	7	13.7255
MST1R	0	genome.wustl.edu	37	3	49940022	49940022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	49940022	49940022	C	T	SNP	MST1R	ENST00000296474	human	ensembl	74_37	-1	known	missense	c.1021	p.E341K	0.970	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MST1R	HGNC	ENSG00000164078				398	0	0	135	24	15.0943
RRP9	0	genome.wustl.edu	37	3	51968519	51968519	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	51968519	51968519	C	T	SNP	RRP9	ENST00000232888	human	ensembl	74_37	-1	known	missense	c.1229	p.R410Q	0.997	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RRP9	HGNC	ENSG00000114767				84	0	0	22	7	24.1379
CACNA1D	0	genome.wustl.edu	37	3	53531422	53531422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	53531422	53531422	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.311	p.R104H	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				220	0	0	89	15	14.4231
CHDH	0	genome.wustl.edu	37	3	53854543	53854543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	53854543	53854543	G	A	SNP	CHDH	ENST00000315251	human	ensembl	74_37	-1	known	missense	c.1078	p.R360W	0.002	pirsf_GMC_OxRdtase	pfam_GMC_OxRdtase_N,pfam_GMC_OxRtase_C,pirsf_GMC_OxRdtase	-	no_errors	CHDH	HGNC	ENSG00000016391				251	1	0.396825	67	16	19.2771
PDHB	0	genome.wustl.edu	37	3	58417706	58417706	+	Silent	SNP	T	T	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	58417706	58417706	T	A	SNP	PDHB	ENST00000302746	human	ensembl	74_37	-1	known	silent	c.102	p.T34	0.901	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	PDHB	HGNC	ENSG00000168291				86	0	0	37	9	19.5652
FAM3D	0	genome.wustl.edu	37	3	58639469	58639469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	58639469	58639469	G	A	SNP	FAM3D	ENST00000358781	human	ensembl	74_37	-1	known	missense	c.53	p.T18M	0.002	NULL	NULL	-	no_errors	FAM3D	HGNC	ENSG00000198643				170	0	0	71	13	15.4762
MAGI1	0	genome.wustl.edu	37	3	65342220	65342220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	65342220	65342220	C	T	SNP	MAGI1	ENST00000402939	human	ensembl	74_37	-1	known	missense	c.4222	p.E1408K	0.999	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				158	0	0	112	10	8.19672
FAM86DP	0	genome.wustl.edu	37	3	75475644	75475644	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	75475644	75475644	G	A	SNP	FAM86DP	ENST00000459803	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.487	-	-	-	no_errors	FAM86DP	HGNC	ENSG00000244026				189	0	0	55	7	11.2903
BRPF1	0	genome.wustl.edu	37	3	9781452	9781452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	9781452	9781452	C	T	SNP	BRPF1	ENST00000383829	human	ensembl	74_37	+1	known	missense	c.1369	p.P457S	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983				54	0	0	15	4	21.0526
ADH1A	0	genome.wustl.edu	37	4	100205900	100205900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	100205900	100205900	G	A	SNP	ADH1A	ENST00000209668	human	ensembl	74_37	-1	known	missense	c.320	p.P107L	0.994	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH1A	HGNC	ENSG00000187758				119	0	0	51	8	13.5593
ZNF518B	0	genome.wustl.edu	37	4	10447064	10447064	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	10447064	10447064	G	T	SNP	ZNF518B	ENST00000326756	human	ensembl	74_37	-1	known	missense	c.889	p.L297M	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163				328	0	0	155	34	17.9894
ZNF518B	0	genome.wustl.edu	37	4	10447911	10447911	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	10447911	10447911	G	A	SNP	ZNF518B	ENST00000326756	human	ensembl	74_37	-1	known	silent	c.42	p.N14	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163				374	1	0.266667	151	34	18.3784
TACR3	0	genome.wustl.edu	37	4	104640560	104640560	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	104640560	104640560	C	T	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	silent	c.273	p.A91	0.019	prints_Neurokn_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				149	0	0	54	18	25
ANK2	0	genome.wustl.edu	37	4	114277438	114277438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	114277438	114277438	C	T	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.7664	p.T2555I	0.073	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				277	0	0	110	24	17.9104
HSPA4L	0	genome.wustl.edu	37	4	128724950	128724950	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	128724950	128724950	T	C	SNP	HSPA4L	ENST00000439123	human	ensembl	74_37	+1	known	missense	c.923	p.M308T	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4L	HGNC	ENSG00000164070				73	0	0	43	11	20.3704
PCDH10	0	genome.wustl.edu	37	4	134084187	134084187	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	134084187	134084187	T	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.2853	p.D951E	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				147	0	0	72	5	6.49351
PCDH18	0	genome.wustl.edu	37	4	138450912	138450912	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	138450912	138450912	C	T	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	silent	c.2331	p.S777	0.003	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				80	0	0	40	5	11.1111
ABCE1	0	genome.wustl.edu	37	4	146044706	146044706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	146044706	146044706	G	A	SNP	ABCE1	ENST00000296577	human	ensembl	74_37	+1	known	missense	c.1594	p.V532I	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	-	no_errors	ABCE1	HGNC	ENSG00000164163				36	0	0	25	8	24.2424
POU4F2	0	genome.wustl.edu	37	4	147561730	147561730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	147561730	147561730	C	T	SNP	POU4F2	ENST00000281321	human	ensembl	74_37	+1	known	missense	c.1000	p.L334F	1.000	superfamily_Homeodomain-like	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615				231	0	0	109	6	5.21739
FHDC1	0	genome.wustl.edu	37	4	153897118	153897118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	153897118	153897118	G	A	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	missense	c.2675	p.R892Q	1.000	NULL	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				88	0	0	38	6	13.6364
LRAT	0	genome.wustl.edu	37	4	155665779	155665779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	155665779	155665779	G	A	SNP	LRAT	ENST00000336356	human	ensembl	74_37	+1	known	missense	c.301	p.V101I	1.000	NULL	pfam_LRAT-like_dom	-	no_errors	LRAT	HGNC	ENSG00000121207				47	0	0	26	6	18.75
FAM198B	0	genome.wustl.edu	37	4	159092400	159092400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	159092400	159092400	G	A	SNP	FAM198B	ENST00000393807	human	ensembl	74_37	-1	known	missense	c.128	p.A43V	1.000	NULL	NULL	-	no_errors	FAM198B	HGNC	ENSG00000164125				115	0	0	51	4	7.27273
GLRA3	0	genome.wustl.edu	37	4	175649729	175649729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	175649729	175649729	C	T	SNP	GLRA3	ENST00000274093	human	ensembl	74_37	-1	known	missense	c.388	p.D130N	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A3,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA3	HGNC	ENSG00000145451				191	0	0	82	13	13.6842
TENM3	0	genome.wustl.edu	37	4	183713497	183713497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	183713497	183713497	C	T	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.5672	p.A1891V	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				159	0	0	52	12	18.75
SLIT2	0	genome.wustl.edu	37	4	20521061	20521061	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	20521061	20521061	T	C	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.1115	p.F372S	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				69	0	0	25	3	10.7143
GPR125	0	genome.wustl.edu	37	4	22390560	22390560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	22390560	22390560	C	T	SNP	GPR125	ENST00000334304	human	ensembl	74_37	-1	known	missense	c.2734	p.A912T	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR125	HGNC	ENSG00000152990				109	0	0	44	18	29.0323
TLR10	0	genome.wustl.edu	37	4	38777063	38777063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	38777063	38777063	G	A	SNP	TLR10	ENST00000308973	human	ensembl	74_37	-1	known	missense	c.149	p.T50I	0.222	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123				83	0	0	48	14	22.5806
LRRC66	0	genome.wustl.edu	37	4	52861526	52861526	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	52861526	52861526	G	A	SNP	LRRC66	ENST00000343457	human	ensembl	74_37	-1	known	silent	c.1662	p.G554	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993				240	0	0	104	18	14.7541
PDGFRA	0	genome.wustl.edu	37	4	55138643	55138643	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	55138643	55138643	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	74_37	+1	known	silent	c.1320	p.T440	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRA	HGNC	ENSG00000134853				137	0	0	55	13	19.1176
EVC2	0	genome.wustl.edu	37	4	5578094	5578094	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	5578094	5578094	G	A	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	nonsense	c.3145	p.Q1049*	1.000	NULL	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				71	0	0	30	8	21.0526
KDR	0	genome.wustl.edu	37	4	55964877	55964877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	55964877	55964877	C	T	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	missense	c.2360	p.R787Q	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052				109	0	0	40	9	18.3673
WFS1	0	genome.wustl.edu	37	4	6302887	6302887	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	6302887	6302887	G	A	SNP	WFS1	ENST00000226760	human	ensembl	74_37	+1	known	silent	c.1365	p.T455	0.748	NULL	NULL	-	no_errors	WFS1	HGNC	ENSG00000109501				140	0	0	63	23	26.7442
PPP2R2C	0	genome.wustl.edu	37	4	6325119	6325119	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	6325119	6325119	C	T	SNP	PPP2R2C	ENST00000335585	human	ensembl	74_37	-1	known	silent	c.1254	p.T418	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2C	HGNC	ENSG00000074211				113	0	0	39	9	18.75
YTHDC1	0	genome.wustl.edu	37	4	69184427	69184427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	69184427	69184427	C	T	SNP	YTHDC1	ENST00000344157	human	ensembl	74_37	-1	known	missense	c.1742	p.R581Q	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896				77	0	0	32	7	17.9487
GC	0	genome.wustl.edu	37	4	72634051	72634051	+	Silent	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	72634051	72634051	C	A	SNP	GC	ENST00000273951	human	ensembl	74_37	-1	known	silent	c.228	p.A76	0.000	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N	pfam_Serum_albumin_N,pfam_VitD-bind_III,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_VitD-bd,prints_ALB/AFP/VDB	-	no_errors	GC	HGNC	ENSG00000145321				56	0	0	23	5	17.8571
PPBP	0	genome.wustl.edu	37	4	74853698	74853698	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	74853698	74853698	A	G	SNP	PPBP	ENST00000296028	human	ensembl	74_37	-1	known	silent	c.123	p.T41	0.102	superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	-	no_errors	PPBP	HGNC	ENSG00000163736				155	0	0	50	4	7.40741
PTPN13	0	genome.wustl.edu	37	4	87622904	87622904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	87622904	87622904	G	A	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	missense	c.1145	p.R382Q	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				127	0	0	57	10	14.9254
CAMK4	0	genome.wustl.edu	37	5	110560283	110560283	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	110560283	110560283	C	T	SNP	CAMK4	ENST00000282356	human	ensembl	74_37	+1	known	silent	c.102	p.I34	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495				51	0	0	19	4	17.3913
APC	0	genome.wustl.edu	37	5	112174554	112174554	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	112174554	112174554	A	C	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.3263	p.K1088T	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				119	0	0	60	4	6.25
APC	0	genome.wustl.edu	37	5	112177857	112177857	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	112177857	112177857	A	G	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.6566	p.K2189R	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				130	0	0	59	11	15.7143
CHSY3	0	genome.wustl.edu	37	5	129241210	129241210	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	129241210	129241210	G	A	SNP	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	missense	c.688	p.D230N	1.000	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108				180	0	0	63	19	23.1707
TERT	0	genome.wustl.edu	37	5	1294331	1294331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	1294331	1294331	G	A	SNP	TERT	ENST00000310581	human	ensembl	74_37	-1	known	missense	c.670	p.R224C	0.011	NULL	pfam_Telomerase_RBD,pfam_RVT,smart_Telomerase_RBD,pfscan_RVT,prints_Telomerase_RT	-	no_errors	TERT	HGNC	ENSG00000164362				18	0	0	4	3	42.8571
PPP2CA	0	genome.wustl.edu	37	5	133561635	133561635	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	133561635	133561635	G	A	SNP	PPP2CA	ENST00000231504	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.978	-	-	-	no_errors	PPP2CA	HGNC	ENSG00000113575				38	0	0	1	3	75
TRPC7	0	genome.wustl.edu	37	5	135549172	135549172	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	135549172	135549172	T	G	SNP	TRPC7	ENST00000513104	human	ensembl	74_37	-1	known	missense	c.2540	p.K847T	1.000	prints_TRPC7_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018				51	0	0	24	7	22.5806
TRPC7	0	genome.wustl.edu	37	5	135692820	135692820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	135692820	135692820	C	T	SNP	TRPC7	ENST00000513104	human	ensembl	74_37	-1	known	missense	c.256	p.V86M	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018				179	1	0.555556	86	12	12.2449
BRD8	0	genome.wustl.edu	37	5	137503737	137503737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	137503737	137503737	C	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.673	p.G225C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				210	0	0	59	32	35.1648
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				214	0	0	55	45	45
ANKHD1	0	genome.wustl.edu	37	5	139865292	139865292	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	139865292	139865292	C	A	SNP	ANKHD1	ENST00000297183	human	ensembl	74_37	+1	known	missense	c.2117	p.P706H	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503				115	0	0	51	12	19.0476
HARS	0	genome.wustl.edu	37	5	140053863	140053863	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	140053863	140053863	G	T	SNP	HARS	ENST00000504156	human	ensembl	74_37	-1	known	silent	c.1509	p.G503	0.434	superfamily_Anticodon-bd	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_His-tRNA-ligase	-	no_errors	HARS	HGNC	ENSG00000170445				80	0	0	29	7	19.4444
PCDHA1	0	genome.wustl.edu	37	5	140166076	140166076	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	140166076	140166076	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	silent	c.201	p.A67	0.998	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				247	1	0.403226	89	22	19.8198
PCDHA4	0	genome.wustl.edu	37	5	140188623	140188623	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	140188623	140188623	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	silent	c.1851	p.G617	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				204	0	0	71	13	15.4762
PCDHA7	0	genome.wustl.edu	37	5	140215888	140215888	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	140215888	140215888	G	A	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	silent	c.1920	p.T640	0.486	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				174	0	0	60	14	18.9189
PCDHA11	0	genome.wustl.edu	37	5	140249016	140249016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	140249016	140249016	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.328	p.V110M	0.976	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				471	0	0	183	43	19.0265
ENSG00000255622	0	genome.wustl.edu	37	5	140537186	140537186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	140537186	140537186	G	A	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	missense	c.1610	p.R537H	0.031	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622				192	0	0	68	15	18.0723
PCDHB18	0	genome.wustl.edu	37	5	140615452	140615452	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	140615452	140615452	C	T	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.298	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				353	0	0	133	29	17.9012
PCDHGA8	0	genome.wustl.edu	37	5	140773918	140773918	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	140773918	140773918	T	C	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	missense	c.1538	p.V513A	0.615	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767				141	0	0	51	16	23.8806
SLC6A3	0	genome.wustl.edu	37	5	1409934	1409934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	1409934	1409934	G	A	SNP	SLC6A3	ENST00000270349	human	ensembl	74_37	-1	known	missense	c.1300	p.L434F	0.999	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319				151	0	0	51	6	10.5263
GRIA1	0	genome.wustl.edu	37	5	153085479	153085479	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	153085479	153085479	C	T	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	missense	c.1705	p.R569C	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				168	0	0	79	23	22.549
TENM2	0	genome.wustl.edu	37	5	167553835	167553835	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	167553835	167553835	C	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	silent	c.2286	p.G762	0.888	pfam_EGF_extracell,smart_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				43	0	0	17	4	19.0476
FTH1P10	0	genome.wustl.edu	37	5	17354466	17354466	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	17354466	17354466	C	T	SNP	FTH1P10	ENST00000401830	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FTH1P10	HGNC	ENSG00000223361				74	0	0	33	7	17.5
FGFR4	0	genome.wustl.edu	37	5	176524326	176524326	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	176524326	176524326	G	A	SNP	FGFR4	ENST00000292408	human	ensembl	74_37	+1	known	silent	c.2187	p.A729	0.000	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR4	HGNC	ENSG00000160867				33	0	0	12	4	25
HNRNPH1	0	genome.wustl.edu	37	5	179042578	179042578	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	179042578	179042578	T	A	SNP	HNRNPH1	ENST00000356731	human	ensembl	74_37	-1	known	missense	c.1319	p.N440I	1.000	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH1	HGNC	ENSG00000169045				70	0	0	26	8	23.5294
MGAT4B	0	genome.wustl.edu	37	5	179226099	179226099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	179226099	179226099	G	A	SNP	MGAT4B	ENST00000337755	human	ensembl	74_37	-1	known	missense	c.1217	p.A406V	0.050	NULL	pfam_Glyco_transf_54	-	no_errors	MGAT4B	HGNC	ENSG00000161013				214	0	0	67	19	22.093
TBC1D9B	0	genome.wustl.edu	37	5	179290483	179290483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	179290483	179290483	C	T	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.3718	p.A1240T	0.995	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				124	0	0	51	7	12.069
MGAT1	0	genome.wustl.edu	37	5	180219400	180219400	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	180219400	180219400	C	T	SNP	MGAT1	ENST00000307826	human	ensembl	74_37	-1	known	nonsense	c.572	p.W191*	1.000	pfam_Glyco_trans_13	pfam_Glyco_trans_13	-	no_errors	MGAT1	HGNC	ENSG00000131446				185	0	0	46	9	16.3636
CDH10	0	genome.wustl.edu	37	5	24505238	24505238	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	24505238	24505238	A	C	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.1376	p.V459G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				86	0	0	53	11	17.1875
PDZD2	0	genome.wustl.edu	37	5	32058080	32058080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	32058080	32058080	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.2071	p.A691T	0.999	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				109	0	0	33	7	17.5
NPR3	0	genome.wustl.edu	37	5	32712054	32712054	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	32712054	32712054	T	G	SNP	NPR3	ENST00000265074	human	ensembl	74_37	+1	known	missense	c.172	p.L58V	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389				22	0	0	10	3	23.0769
IRX1	0	genome.wustl.edu	37	5	3599501	3599501	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	3599501	3599501	A	G	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.439	p.N147D	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				140	0	0	64	10	13.5135
DAB2	0	genome.wustl.edu	37	5	39382876	39382876	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	39382876	39382876	C	T	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	silent	c.1185	p.P395	0.999	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				161	0	0	66	15	18.5185
PTGER4	0	genome.wustl.edu	37	5	40681632	40681632	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	40681632	40681632	G	A	SNP	PTGER4	ENST00000302472	human	ensembl	74_37	+1	known	silent	c.537	p.T179	0.969	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prost_EP4_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC	ENSG00000171522				122	0	0	42	13	23.6364
C7	0	genome.wustl.edu	37	5	40955513	40955513	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	40955513	40955513	G	A	SNP	C7	ENST00000313164	human	ensembl	74_37	+1	known	missense	c.1118	p.G373E	0.916	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936				248	0	0	98	12	10.9091
AHRR	0	genome.wustl.edu	37	5	427768	427768	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	427768	427768	C	A	SNP	AHRR	ENST00000316418	human	ensembl	74_37	+1	known	missense	c.737	p.A246D	0.001	NULL	pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHRR	HGNC	ENSG00000063438				192	0	0	62	15	19.4805
AHRR	0	genome.wustl.edu	37	5	434269	434269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	434269	434269	G	A	SNP	AHRR	ENST00000316418	human	ensembl	74_37	+1	known	missense	c.1480	p.G494S	0.000	NULL	pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHRR	HGNC	ENSG00000063438				78	0	0	28	9	24.3243
C5orf34	0	genome.wustl.edu	37	5	43506054	43506054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	43506054	43506054	G	A	SNP	C5orf34	ENST00000306862	human	ensembl	74_37	-1	known	missense	c.728	p.S243F	1.000	NULL	NULL	-	no_errors	C5orf34	HGNC	ENSG00000172244				180	0	0	100	26	20.6349
SLC9A3	0	genome.wustl.edu	37	5	482775	482775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	482775	482775	C	T	SNP	SLC9A3	ENST00000264938	human	ensembl	74_37	-1	known	missense	c.1244	p.R415H	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_dom,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230				65	0	0	26	7	21.2121
ADAMTS16	0	genome.wustl.edu	37	5	5232611	5232611	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	5232611	5232611	G	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.1832	p.R611H	0.998	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				160	0	0	78	5	6.0241
GZMA	0	genome.wustl.edu	37	5	54404137	54404137	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	54404137	54404137	A	G	SNP	GZMA	ENST00000274306	human	ensembl	74_37	+1	known	missense	c.542	p.D181G	0.995	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	GZMA	HGNC	ENSG00000145649				98	0	0	44	16	26.6667
MAST4	0	genome.wustl.edu	37	5	66456371	66456371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	66456371	66456371	C	T	SNP	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	missense	c.3745	p.R1249W	1.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				244	0	0	93	19	16.9643
RAD17	0	genome.wustl.edu	37	5	68687822	68687822	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	68687822	68687822	A	G	SNP	RAD17	ENST00000380774	human	ensembl	74_37	+1	known	missense	c.1204	p.K402E	1.000	tigrfam_Checkpoint_prot_Rad24_fun/met	superfamily_P-loop_NTPase,tigrfam_Checkpoint_prot_Rad24_fun/met	-	no_errors	RAD17	HGNC	ENSG00000152942				137	0	0	56	16	22.2222
ZNF366	0	genome.wustl.edu	37	5	71756247	71756247	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	71756247	71756247	G	A	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	silent	c.1077	p.H359	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				71	0	0	29	6	17.1429
GFM2	0	genome.wustl.edu	37	5	74028900	74028900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	74028900	74028900	G	A	SNP	GFM2	ENST00000296805	human	ensembl	74_37	-1	known	missense	c.1534	p.L512F	1.000	superfamily_EFG_III-V	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_EFG_III-V,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM2	HGNC	ENSG00000164347				129	0	0	67	10	12.987
COL4A3BP	0	genome.wustl.edu	37	5	74698880	74698880	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	74698880	74698880	C	A	SNP	COL4A3BP	ENST00000380494	human	ensembl	74_37	-1	known	missense	c.1318	p.G440C	1.000	NULL	pfam_START_lipid-bd_dom,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_START_lipid-bd_dom,pfscan_Pleckstrin_homology,pfscan_START_lipid-bd_dom	-	no_errors	COL4A3BP	HGNC	ENSG00000113163				117	0	0	55	5	8.33333
LOC101929215	0	genome.wustl.edu	37	5	79368029	79368029	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	79368029	79368029	G	A	SNP	LOC101929215	ENST00000514042	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	CTD-2201I18.1	Clone_based_vega_gene	ENSG00000249825				180	0	0	66	16	19.5122
GPR98	0	genome.wustl.edu	37	5	89953947	89953947	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	89953947	89953947	A	G	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.4604	p.E1535G	1.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				174	0	0	85	5	5.55556
ASCC3	0	genome.wustl.edu	37	6	101077033	101077033	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	101077033	101077033	C	T	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	silent	c.4233	p.V1411	0.997	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				64	0	0	39	4	9.30233
NR2E1	0	genome.wustl.edu	37	6	108492665	108492665	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	108492665	108492665	G	A	SNP	NR2E1	ENST00000368986	human	ensembl	74_37	+1	known	missense	c.29	p.R10H	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR2E1	HGNC	ENSG00000112333				257	0	0	81	12	12.9032
AK9	0	genome.wustl.edu	37	6	109867151	109867151	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	109867151	109867151	G	A	SNP	AK9	ENST00000424296	human	ensembl	74_37	-1	known	silent	c.3144	p.N1048	0.069	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085				121	0	0	64	18	21.9512
TRAF3IP2	0	genome.wustl.edu	37	6	111896928	111896928	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	111896928	111896928	C	T	SNP	TRAF3IP2	ENST00000340026	human	ensembl	74_37	-1	known	silent	c.1146	p.P382	0.000	NULL	pfam_SEFIR	-	no_errors	TRAF3IP2	HGNC	ENSG00000056972				165	0	0	52	5	8.77193
NUS1	0	genome.wustl.edu	37	6	118015303	118015303	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	118015303	118015303	A	G	SNP	NUS1	ENST00000368494	human	ensembl	74_37	+1	known	silent	c.651	p.R217	0.000	pfam_UPP_synth-like,superfamily_UPP_synth-like	pfam_UPP_synth-like,superfamily_UPP_synth-like	-	no_errors	NUS1	HGNC	ENSG00000153989				243	0	0	100	17	14.5299
MAN1A1	0	genome.wustl.edu	37	6	119669917	119669917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	119669917	119669917	C	T	SNP	MAN1A1	ENST00000368468	human	ensembl	74_37	-1	known	missense	c.314	p.R105H	0.885	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885				51	0	0	24	3	11.1111
HIVEP1	0	genome.wustl.edu	37	6	12124092	12124092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	12124092	12124092	A	G	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.4064	p.N1355S	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				103	0	0	52	11	17.4603
HIVEP2	0	genome.wustl.edu	37	6	143091558	143091558	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	143091558	143091558	G	A	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	nonsense	c.4318	p.R1440*	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				143	0	0	41	8	16.3265
UST	0	genome.wustl.edu	37	6	149395060	149395060	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	149395060	149395060	C	T	SNP	UST	ENST00000367463	human	ensembl	74_37	+1	known	silent	c.1029	p.Y343	0.970	pfam_Sulfotransferase	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	UST	HGNC	ENSG00000111962				138	0	0	66	4	5.71429
TIAM2	0	genome.wustl.edu	37	6	155574136	155574136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	155574136	155574136	C	T	SNP	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	missense	c.4261	p.R1421C	1.000	smart_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				88	0	0	23	6	20.6897
TFB1M	0	genome.wustl.edu	37	6	155581523	155581523	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	155581523	155581523	G	A	SNP	TFB1M	ENST00000367166	human	ensembl	74_37	-1	known	silent	c.678	p.G226	0.092	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N	-	no_errors	TFB1M	HGNC	ENSG00000029639				82	0	0	42	11	20.7547
PACRG	0	genome.wustl.edu	37	6	163149256	163149256	+	RNA	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	163149256	163149256	T	G	SNP	PACRG	ENST00000542669	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PACRG	HGNC	ENSG00000112530				541	0	0	141	42	22.9508
SMOC2	0	genome.wustl.edu	37	6	168999659	168999659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	168999659	168999659	C	T	SNP	SMOC2	ENST00000354536	human	ensembl	74_37	+1	known	missense	c.832	p.R278C	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_EF_hand_dom,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562				27	0	0	9	3	25
HIST1H3C	0	genome.wustl.edu	37	6	26046023	26046023	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	26046023	26046023	C	T	SNP	HIST1H3C	ENST00000540144	human	ensembl	74_37	+1	known	missense	c.385	p.R129C	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3C	HGNC	ENSG00000196532				90	0	0	43	7	14
BTN2A1	0	genome.wustl.edu	37	6	26468713	26468713	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	26468713	26468713	A	G	SNP	BTN2A1	ENST00000312541	human	ensembl	74_37	+1	known	missense	c.1520	p.N507S	0.000	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A1	HGNC	ENSG00000112763				202	0	0	71	14	16.4706
BTN2A1	0	genome.wustl.edu	37	6	26468722	26468722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	26468722	26468722	C	T	SNP	BTN2A1	ENST00000312541	human	ensembl	74_37	+1	known	missense	c.1529	p.T510M	0.000	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A1	HGNC	ENSG00000112763				200	0	0	67	13	16.25
SCAND3	0	genome.wustl.edu	37	6	28540669	28540669	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	28540669	28540669	G	A	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	silent	c.2997	p.C999	1.000	superfamily_RNaseH-like_dom	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				195	0	0	81	25	23.5849
OR11A1	0	genome.wustl.edu	37	6	29394924	29394924	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	29394924	29394924	G	T	SNP	OR11A1	ENST00000377147	human	ensembl	74_37	-1	known	silent	c.495	p.A165	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11A1	HGNC	ENSG00000204694				67	0	0	26	9	25.7143
TRIM26	0	genome.wustl.edu	37	6	30166814	30166814	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	30166814	30166814	G	T	SNP	TRIM26	ENST00000437089	human	ensembl	74_37	-1	known	missense	c.67	p.L23M	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127				70	0	0	35	5	12.5
RIPK1	0	genome.wustl.edu	37	6	3077208	3077208	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	3077208	3077208	C	A	SNP	RIPK1	ENST00000259808	human	ensembl	74_37	+1	known	missense	c.151	p.P51T	0.994	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Death_domain,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK1	HGNC	ENSG00000137275				105	0	0	36	7	16.2791
MUC21	0	genome.wustl.edu	37	6	30955787	30955787	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	30955787	30955787	T	G	SNP	MUC21	ENST00000376296	human	ensembl	74_37	+1	known	missense	c.1517	p.L506R	0.024	NULL	NULL	-	no_errors	MUC21	HGNC	ENSG00000204544				115	0	0	42	9	17.6471
NFKBIL1	0	genome.wustl.edu	37	6	31525449	31525449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	31525449	31525449	G	A	SNP	NFKBIL1	ENST00000376148	human	ensembl	74_37	+1	known	missense	c.379	p.A127T	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NFKBIL1	HGNC	ENSG00000204498				114	0	0	31	7	18.4211
RXRB	0	genome.wustl.edu	37	6	33163388	33163388	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	33163388	33163388	G	A	SNP	RXRB	ENST00000374680	human	ensembl	74_37	-1	known	silent	c.1215	p.R405	0.989	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Retinoid-X_rcpt/HNF4,prints_Retinoic_acid_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	RXRB	HGNC	ENSG00000204231				97	0	0	40	10	20
ZBTB9	0	genome.wustl.edu	37	6	33424018	33424018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	33424018	33424018	G	A	SNP	ZBTB9	ENST00000395064	human	ensembl	74_37	+1	known	missense	c.1141	p.G381R	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB9	HGNC	ENSG00000213588				50	0	0	29	4	12.1212
SPDEF	0	genome.wustl.edu	37	6	34512112	34512112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	34512112	34512112	G	A	SNP	SPDEF	ENST00000374037	human	ensembl	74_37	-1	known	missense	c.121	p.R41W	0.001	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPDEF	HGNC	ENSG00000124664				51	0	0	19	8	29.6296
ZNF76	0	genome.wustl.edu	37	6	35259412	35259412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	35259412	35259412	C	T	SNP	ZNF76	ENST00000373953	human	ensembl	74_37	+1	known	missense	c.829	p.R277C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF76	HGNC	ENSG00000065029				148	0	0	49	11	18.3333
STK38	0	genome.wustl.edu	37	6	36475326	36475326	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	36475326	36475326	A	G	SNP	STK38	ENST00000229812	human	ensembl	74_37	-1	known	silent	c.723	p.H241	0.913	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	STK38	HGNC	ENSG00000112079				621	0	0	220	56	20.2899
MTCH1	0	genome.wustl.edu	37	6	36946332	36946332	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	36946332	36946332	G	T	SNP	MTCH1	ENST00000373627	human	ensembl	74_37	-1	known	silent	c.462	p.P154	1.000	superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	MTCH1	HGNC	ENSG00000137409				222	0	0	94	13	12.1495
MDGA1	0	genome.wustl.edu	37	6	37613720	37613720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	37613720	37613720	G	A	SNP	MDGA1	ENST00000434837	human	ensembl	74_37	-1	known	missense	c.2237	p.P746L	1.000	NULL	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA1	HGNC	ENSG00000112139				80	0	0	31	5	13.8889
ZFAND3	0	genome.wustl.edu	37	6	38084410	38084410	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	38084410	38084410	C	T	SNP	ZFAND3	ENST00000287218	human	ensembl	74_37	+1	known	missense	c.424	p.R142W	0.982	NULL	pfam_Znf_AN1,pfam_Znf_A20,smart_Znf_A20,smart_Znf_AN1,pfscan_Znf_A20,pfscan_Znf_AN1	-	no_errors	ZFAND3	HGNC	ENSG00000156639				148	0	0	49	7	12.5
DAAM2	0	genome.wustl.edu	37	6	39869739	39869739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	39869739	39869739	C	T	SNP	DAAM2	ENST00000274867	human	ensembl	74_37	+1	known	missense	c.3133	p.R1045C	1.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DAAM2	HGNC	ENSG00000146122				106	0	0	40	7	14.8936
PGC	0	genome.wustl.edu	37	6	41712453	41712453	+	Silent	SNP	A	A	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	41712453	41712453	A	T	SNP	PGC	ENST00000373025	human	ensembl	74_37	-1	known	silent	c.153	p.A51	0.000	superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	PGC	HGNC	ENSG00000096088				63	0	0	33	5	13.1579
BYSL	0	genome.wustl.edu	37	6	41900303	41900303	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	41900303	41900303	C	T	SNP	BYSL	ENST00000230340	human	ensembl	74_37	+1	known	silent	c.1173	p.A391	0.017	pfam_Bystin	pfam_Bystin	-	no_errors	BYSL	HGNC	ENSG00000112578				200	0	0	68	13	16.0494
CUL9	0	genome.wustl.edu	37	6	43166460	43166460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	43166460	43166460	C	T	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	missense	c.2917	p.R973C	0.928	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				285	0	0	102	19	15.7025
TDRD6	0	genome.wustl.edu	37	6	46656498	46656498	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	46656498	46656498	C	T	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	silent	c.633	p.R211	0.983	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				123	0	0	54	10	15.625
TDRD6	0	genome.wustl.edu	37	6	46661523	46661523	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	46661523	46661523	C	T	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	silent	c.5658	p.G1886	0.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				63	0	0	50	10	16.6667
EFHC1	0	genome.wustl.edu	37	6	52329890	52329890	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	52329890	52329890	C	T	SNP	EFHC1	ENST00000371068	human	ensembl	74_37	+1	known	missense	c.1114	p.R372W	1.000	NULL	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_hand_dom	-	no_errors	EFHC1	HGNC	ENSG00000096093				59	0	0	32	14	30.4348
ICK	0	genome.wustl.edu	37	6	52878462	52878462	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	52878462	52878462	A	G	SNP	ICK	ENST00000350082	human	ensembl	74_37	-1	known	missense	c.1150	p.S384P	0.557	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ICK	HGNC	ENSG00000112144				259	0	0	98	18	15.5172
FILIP1	0	genome.wustl.edu	37	6	76018593	76018593	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	76018593	76018593	G	T	SNP	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	silent	c.3456	p.S1152	0.958	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407				116	0	0	43	13	23.2143
PHIP	0	genome.wustl.edu	37	6	79752650	79752650	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	79752650	79752650	A	G	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	silent	c.510	p.Y170	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247				320	0	0	115	18	13.5338
TTK	0	genome.wustl.edu	37	6	80751905	80751905	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	80751905	80751905	A	G	SNP	TTK	ENST00000369798	human	ensembl	74_37	+1	known	missense	c.2560	p.R854G	0.014	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				90	0	0	40	10	20
SNAP91	0	genome.wustl.edu	37	6	84417539	84417539	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	84417539	84417539	G	A	SNP	SNAP91	ENST00000369694	human	ensembl	74_37	-1	known	silent	c.108	p.G36	1.000	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609				274	0	0	110	13	10.5691
C6orf165	0	genome.wustl.edu	37	6	88138405	88138405	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	88138405	88138405	G	T	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	missense	c.1022	p.G341V	1.000	pfam_DUF3508	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				222	0	0	96	19	16.5217
RRAGD	0	genome.wustl.edu	37	6	90097137	90097137	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	90097137	90097137	G	A	SNP	RRAGD	ENST00000369415	human	ensembl	74_37	-1	known	silent	c.321	p.N107	1.000	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	-	no_errors	RRAGD	HGNC	ENSG00000025039				378	0	0	180	34	15.8879
MDN1	0	genome.wustl.edu	37	6	90461284	90461284	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	90461284	90461284	T	G	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.3093	p.K1031N	0.880	superfamily_P-loop_NTPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				106	0	0	43	6	12.2449
CASP8AP2	0	genome.wustl.edu	37	6	90573907	90573907	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	90573907	90573907	G	A	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.421	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				88	0	0	42	15	26.3158
MUC17	0	genome.wustl.edu	37	7	100676090	100676090	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	100676090	100676090	G	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.1393	p.A465T	0.005	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				730	2	0.273224	334	79	19.1283
CUX1	0	genome.wustl.edu	37	7	101840004	101840004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	101840004	101840004	C	T	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	missense	c.1346	p.P449L	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				203	0	0	73	14	16.092
DPY19L2P2	0	genome.wustl.edu	37	7	102835961	102835961	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	102835961	102835961	C	T	SNP	DPY19L2P2	ENST00000312132	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DPY19L2P2	HGNC	ENSG00000170629				75	0	0	37	5	11.9048
RELN	0	genome.wustl.edu	37	7	103179672	103179672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	103179672	103179672	G	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.7033	p.P2345S	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				86	0	0	36	5	12.1951
PUS7	0	genome.wustl.edu	37	7	105135657	105135657	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	105135657	105135657	G	T	SNP	PUS7	ENST00000356362	human	ensembl	74_37	-1	known	nonsense	c.774	p.C258*	1.000	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7	HGNC	ENSG00000091127				275	0	0	139	25	15.2439
THSD7A	0	genome.wustl.edu	37	7	11441596	11441596	+	Splice_Site	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	11441596	11441596	C	A	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	splice_site	c.4238-1	e23-1	1.000	-	-	-	no_errors	THSD7A	HGNC	ENSG00000005108				157	0	0	76	6	7.31707
CTTNBP2	0	genome.wustl.edu	37	7	117432324	117432324	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	117432324	117432324	G	T	SNP	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	missense	c.926	p.T309K	1.000	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				296	1	0.3367	131	28	17.6101
AASS	0	genome.wustl.edu	37	7	121755182	121755182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	121755182	121755182	G	A	SNP	AASS	ENST00000393376	human	ensembl	74_37	-1	known	missense	c.989	p.A330V	0.152	pfam_AlaDH/PNT_NAD(H)-bd	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311				149	0	0	46	14	23.3333
ZNF800	0	genome.wustl.edu	37	7	127014561	127014561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	127014561	127014561	G	A	SNP	ZNF800	ENST00000265827	human	ensembl	74_37	-1	known	missense	c.829	p.R277C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405				178	0	0	71	16	18.3908
LRRC4	0	genome.wustl.edu	37	7	127669515	127669515	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	127669515	127669515	G	T	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.1179	p.S393R	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				131	0	0	51	6	10.5263
LRRC4	0	genome.wustl.edu	37	7	127670327	127670327	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	127670327	127670327	C	G	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.367	p.A123P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				135	0	0	48	16	25
MIR335	0	genome.wustl.edu	37	7	130137901	130137901	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	130137901	130137901	G	A	SNP	MIR335	ENST00000604666	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	hsa-mir-335	miRBase	ENSG00000270823				217	0	0	82	26	24.0741
MKLN1	0	genome.wustl.edu	37	7	131128350	131128350	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	131128350	131128350	G	T	SNP	MKLN1	ENST00000352689	human	ensembl	74_37	+1	known	missense	c.1284	p.L428F	0.879	NULL	pfam_Muskelin_N,pfam_Kelch_1,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_LisH_dimerisation,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MKLN1	HGNC	ENSG00000128585				117	1	0.847458	57	21	26.9231
AKR1B15	0	genome.wustl.edu	37	7	134254170	134254170	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	134254170	134254170	G	A	SNP	AKR1B15	ENST00000423958	human	ensembl	74_37	+1	known	nonsense	c.240	p.W80*	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B15	HGNC	ENSG00000227471				161	0	0	61	8	11.5942
KIAA1549	0	genome.wustl.edu	37	7	138566238	138566238	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	138566238	138566238	C	T	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	silent	c.4125	p.A1375	0.017	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				127	0	0	46	9	16.3636
KIAA1549	0	genome.wustl.edu	37	7	138603140	138603140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	138603140	138603140	G	A	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.1232	p.P411L	0.946	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				176	1	0.564972	60	15	20
RAB19	0	genome.wustl.edu	37	7	140107546	140107546	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	140107546	140107546	G	T	SNP	RAB19	ENST00000275874	human	ensembl	74_37	+1	known	missense	c.100	p.V34L	1.000	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB19	HGNC	ENSG00000146955				149	0	0	38	14	26.9231
SLC4A2	0	genome.wustl.edu	37	7	150759083	150759083	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	150759083	150759083	C	T	SNP	SLC4A2	ENST00000413384	human	ensembl	74_37	+1	known	silent	c.9	p.S3	1.000	NULL	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889				35	0	0	15	3	16.6667
FASTK	0	genome.wustl.edu	37	7	150774877	150774877	+	RNA	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	150774877	150774877	G	T	SNP	FASTK	ENST00000461979	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FASTK	HGNC	ENSG00000164896				71	0	0	28	11	28.2051
CRYGN	0	genome.wustl.edu	37	7	151135100	151135100	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	151135100	151135100	G	T	SNP	CRYGN	ENST00000337323	human	ensembl	74_37	-1	known	silent	c.252	p.S84	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGN	HGNC	ENSG00000127377				102	0	0	28	6	17.6471
INTS1	0	genome.wustl.edu	37	7	1523451	1523451	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	1523451	1523451	G	A	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	silent	c.3954	p.S1318	0.592	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				90	0	0	34	8	19.0476
RBM33	0	genome.wustl.edu	37	7	155556521	155556521	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	155556521	155556521	G	T	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	missense	c.2995	p.G999C	1.000	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				26	0	0	8	2	20
NOM1	0	genome.wustl.edu	37	7	156762322	156762322	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	156762322	156762322	C	T	SNP	NOM1	ENST00000275820	human	ensembl	74_37	+1	known	silent	c.2508	p.D836	0.995	NULL	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909				332	0	0	94	11	10.4762
TMEM184A	0	genome.wustl.edu	37	7	1590549	1590549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	1590549	1590549	C	T	SNP	TMEM184A	ENST00000297477	human	ensembl	74_37	-1	known	missense	c.289	p.V97M	1.000	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	TMEM184A	HGNC	ENSG00000164855				84	0	0	22	5	18.5185
OSBPL3	0	genome.wustl.edu	37	7	24874117	24874117	+	Silent	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	24874117	24874117	G	T	SNP	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	silent	c.1734	p.P578	0.802	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882				174	0	0	68	10	12.8205
AMZ1	0	genome.wustl.edu	37	7	2752350	2752350	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	2752350	2752350	C	T	SNP	AMZ1	ENST00000312371	human	ensembl	74_37	+1	known	silent	c.1335	p.G445	1.000	NULL	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ1	HGNC	ENSG00000174945				89	0	0	27	5	15.625
CCDC129	0	genome.wustl.edu	37	7	31690787	31690787	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	31690787	31690787	C	T	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	missense	c.2693	p.T898M	0.000	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				196	0	0	71	12	14.4578
EPDR1	0	genome.wustl.edu	37	7	37960699	37960699	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	37960699	37960699	T	C	SNP	EPDR1	ENST00000559325	human	ensembl	74_37	+1	known	missense	c.518	p.V173A	0.980	smart_Ependymin,prints_Ependymin	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289				18	0	0	9	4	30.7692
AEBP1	0	genome.wustl.edu	37	7	44153500	44153500	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	44153500	44153500	C	T	SNP	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	silent	c.3117	p.N1039	0.164	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				74	0	0	27	7	20.5882
ADCY1	0	genome.wustl.edu	37	7	45632428	45632428	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	45632428	45632428	G	A	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	missense	c.710	p.R237H	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				205	0	0	80	13	13.9785
ADCY1	0	genome.wustl.edu	37	7	45742987	45742987	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	45742987	45742987	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	nonsense	c.2467	p.R823*	0.989	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				167	0	0	52	17	24.6377
PKD1L1	0	genome.wustl.edu	37	7	47851593	47851593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	47851593	47851593	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	missense	c.7403	p.S2468N	0.027	pfam_PKD1_2_channel	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				20	0	0	7	7	50
FKBP9L	0	genome.wustl.edu	37	7	55752957	55752957	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	55752957	55752957	C	T	SNP	FKBP9L	ENST00000455909	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FKBP9L	HGNC	ENSG00000176826				59	0	0	30	4	11.7647
ZNF713	0	genome.wustl.edu	37	7	56007543	56007543	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	56007543	56007543	T	C	SNP	ZNF713	ENST00000429591	human	ensembl	74_37	+1	known	silent	c.1137	p.H379	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF713	HGNC	ENSG00000178665				116	0	0	48	18	27.2727
PMS2	0	genome.wustl.edu	37	7	6026895	6026895	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	6026895	6026895	C	T	SNP	PMS2	ENST00000265849	human	ensembl	74_37	-1	known	missense	c.1501	p.V501M	0.001	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512				150	0	0	72	17	19.1011
PMS2	0	genome.wustl.edu	37	7	6042145	6042145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	6042145	6042145	A	G	SNP	PMS2	ENST00000265849	human	ensembl	74_37	-1	known	missense	c.476	p.V159A	0.928	superfamily_HATPase_ATP-bd,tigrfam_DNA_mismatch_repair_N	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512				205	0	0	117	19	13.9706
PRKAR1B	0	genome.wustl.edu	37	7	618981	618981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	618981	618981	G	A	SNP	PRKAR1B	ENST00000360274	human	ensembl	74_37	-1	known	missense	c.803	p.A268V	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1B	HGNC	ENSG00000188191				141	0	0	49	11	18.3333
CCT6P1	0	genome.wustl.edu	37	7	65225435	65225435	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	65225435	65225435	C	T	SNP	CCT6P1	ENST00000442266	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	CCT6P1	HGNC	ENSG00000228409				43	0	0	22	6	21.4286
TYW1B	0	genome.wustl.edu	37	7	72281204	72281204	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	72281204	72281204	G	A	SNP	TYW1B	ENST00000438904	human	ensembl	74_37	-1	known	silent	c.285	p.D95	0.960	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1B	HGNC	ENSG00000254184				156	0	0	77	15	16.3043
STX1A	0	genome.wustl.edu	37	7	73117167	73117167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	73117167	73117167	G	A	SNP	STX1A	ENST00000395154	human	ensembl	74_37	-1	putative	missense	c.686	p.A229V	0.018	NULL	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,pfscan_T_SNARE_dom	-	no_errors	STX1A	HGNC	ENSG00000106089				87	0	0	24	4	14.2857
WBSCR28	0	genome.wustl.edu	37	7	73280112	73280112	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	73280112	73280112	T	C	SNP	WBSCR28	ENST00000320531	human	ensembl	74_37	+1	known	missense	c.707	p.V236A	0.000	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877				387	1	0.257732	138	45	24.5902
ZNF804B	0	genome.wustl.edu	37	7	88963218	88963218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	88963218	88963218	G	A	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.922	p.D308N	0.028	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				88	0	0	29	5	14.7059
SAMD9	0	genome.wustl.edu	37	7	92733171	92733171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	92733171	92733171	G	A	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	missense	c.2240	p.A747V	0.997	superfamily_P-loop_NTPase	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413				339	1	0.294118	174	42	19.4444
COL1A2	0	genome.wustl.edu	37	7	94041414	94041414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	94041414	94041414	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.1385	p.A462V	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				27	0	0	23	7	23.3333
DYNC1I1	0	genome.wustl.edu	37	7	95499216	95499216	+	Silent	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	95499216	95499216	C	A	SNP	DYNC1I1	ENST00000324972	human	ensembl	74_37	+1	known	silent	c.447	p.G149	0.055	pfam_Dynein_IC_1/2	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560				194	0	0	81	12	12.9032
SMURF1	0	genome.wustl.edu	37	7	98649848	98649848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	98649848	98649848	G	A	SNP	SMURF1	ENST00000361125	human	ensembl	74_37	-1	known	missense	c.701	p.P234L	0.999	superfamily_WW_dom,pfscan_WW_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF1	HGNC	ENSG00000198742				258	0	0	82	12	12.766
RRM2B	0	genome.wustl.edu	37	8	103220371	103220371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	103220371	103220371	G	A	SNP	RRM2B	ENST00000251810	human	ensembl	74_37	-1	known	missense	c.1046	p.A349V	1.000	NULL	pfam_RNR_small,superfamily_Ferritin-like_SF	-	no_errors	RRM2B	HGNC	ENSG00000048392				100	0	0	41	17	29.3103
UBR5	0	genome.wustl.edu	37	8	103289205	103289205	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	103289205	103289205	A	G	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	silent	c.6504	p.S2168	0.972	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				110	0	0	51	8	13.5593
AZIN1	0	genome.wustl.edu	37	8	103855874	103855874	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	103855874	103855874	C	A	SNP	AZIN1	ENST00000337198	human	ensembl	74_37	-1	known	nonsense	c.7	p.G3*	1.000	NULL	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	AZIN1	HGNC	ENSG00000155096				122	0	0	54	5	8.47458
LRP12	0	genome.wustl.edu	37	8	105503269	105503269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	105503269	105503269	G	A	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	missense	c.2155	p.R719C	0.999	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				99	0	0	56	14	20
FAM167A	0	genome.wustl.edu	37	8	11282093	11282093	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	11282093	11282093	C	T	SNP	FAM167A	ENST00000284486	human	ensembl	74_37	-1	known	missense	c.434	p.R145H	1.000	pfam_FAM167	pfam_FAM167	-	no_errors	FAM167A	HGNC	ENSG00000154319				82	0	0	35	7	16.6667
DLC1	0	genome.wustl.edu	37	8	12957132	12957132	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	12957132	12957132	T	G	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.2714	p.E905A	1.000	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				80	0	0	25	8	24.2424
EFR3A	0	genome.wustl.edu	37	8	133015532	133015532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	133015532	133015532	G	A	SNP	EFR3A	ENST00000254624	human	ensembl	74_37	+1	known	missense	c.2360	p.R787H	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294				142	0	0	53	10	15.873
KCNK9	0	genome.wustl.edu	37	8	140631097	140631097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	140631097	140631097	C	T	SNP	KCNK9	ENST00000303015	human	ensembl	74_37	-1	known	missense	c.529	p.A177T	1.000	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK9,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427				68	0	0	42	9	17.6471
DENND3	0	genome.wustl.edu	37	8	142202652	142202652	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	142202652	142202652	G	T	SNP	DENND3	ENST00000262585	human	ensembl	74_37	+1	known	nonsense	c.3286	p.G1096*	0.922	superfamily_WD40_repeat_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339				140	0	0	51	7	12.069
EPPK1	0	genome.wustl.edu	37	8	144945087	144945087	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	144945087	144945087	G	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	missense	c.2335	p.L779M	0.991	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				171	0	0	59	12	16.9014
PLEC	0	genome.wustl.edu	37	8	144999695	144999695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	144999695	144999695	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.4813	p.R1605C	0.969	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				52	0	0	14	3	17.6471
SLC39A4	0	genome.wustl.edu	37	8	145638296	145638296	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	145638296	145638296	G	A	SNP	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	silent	c.1662	p.S554	0.800	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804				35	0	0	17	4	19.0476
MYOM2	0	genome.wustl.edu	37	8	2064029	2064029	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	2064029	2064029	A	C	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	missense	c.3345	p.E1115D	0.041	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				44	0	0	20	5	20
BMP1	0	genome.wustl.edu	37	8	22053003	22053003	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	22053003	22053003	C	T	SNP	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	silent	c.1668	p.R556	0.999	pirsf_BMP_1/tolloid-like,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				135	0	0	58	9	13.4328
TNFRSF10D	0	genome.wustl.edu	37	8	23002133	23002133	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	23002133	23002133	G	A	SNP	TNFRSF10D	ENST00000312584	human	ensembl	74_37	-1	known	missense	c.784	p.R262C	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_10	-	no_errors	TNFRSF10D	HGNC	ENSG00000173530				101	0	0	30	5	14.2857
LOXL2	0	genome.wustl.edu	37	8	23198632	23198632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	23198632	23198632	C	T	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	missense	c.616	p.V206M	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				244	0	0	85	13	13.2653
PPP2R2A	0	genome.wustl.edu	37	8	26221281	26221281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	26221281	26221281	G	A	SNP	PPP2R2A	ENST00000380737	human	ensembl	74_37	+1	known	missense	c.847	p.E283K	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2A	HGNC	ENSG00000221914				82	0	0	36	7	16.2791
CHRNA2	0	genome.wustl.edu	37	8	27321182	27321182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	27321182	27321182	C	T	SNP	CHRNA2	ENST00000407991	human	ensembl	74_37	-1	known	missense	c.778	p.V260I	0.996	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA2	HGNC	ENSG00000120903				105	0	0	37	10	21.2766
KIF13B	0	genome.wustl.edu	37	8	28974486	28974486	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	28974486	28974486	G	A	SNP	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	silent	c.3699	p.G1233	0.612	pfam_Kinesin-like	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892				153	0	0	48	17	26.1538
KIF13B	0	genome.wustl.edu	37	8	29035015	29035015	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	29035015	29035015	C	T	SNP	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	silent	c.801	p.G267	0.063	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892				231	0	0	82	11	11.828
CSMD1	0	genome.wustl.edu	37	8	3253820	3253820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	3253820	3253820	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.2492	p.G831D	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				26	0	0	8	3	27.2727
BRF2	0	genome.wustl.edu	37	8	37704629	37704629	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	37704629	37704629	C	T	SNP	BRF2	ENST00000220659	human	ensembl	74_37	-1	known	silent	c.279	p.A93	0.334	superfamily_Cyclin-like	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221				235	0	0	93	19	16.9643
SLC20A2	0	genome.wustl.edu	37	8	42323320	42323320	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	42323320	42323320	C	T	SNP	SLC20A2	ENST00000342228	human	ensembl	74_37	-1	known	silent	c.405	p.V135	0.996	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A2	HGNC	ENSG00000168575				145	0	0	68	15	18.0723
PXDNL	0	genome.wustl.edu	37	8	52284448	52284448	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	52284448	52284448	G	T	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.3886	p.Q1296K	1.000	superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				48	0	0	19	4	17.3913
ATP6V1H	0	genome.wustl.edu	37	8	54742014	54742014	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	54742014	54742014	T	A	SNP	ATP6V1H	ENST00000359530	human	ensembl	74_37	-1	known	missense	c.296	p.D99V	1.000	pfam_ATPase_V1-cplx_hsu,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	pfam_ATPase_V1-cplx_hsu,pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	-	no_errors	ATP6V1H	HGNC	ENSG00000047249				102	0	0	54	11	16.9231
RP1	0	genome.wustl.edu	37	8	55537789	55537789	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	55537789	55537789	C	T	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	silent	c.1347	p.P449	0.902	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				150	0	0	64	15	18.9873
MOS	0	genome.wustl.edu	37	8	57025637	57025637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	57025637	57025637	G	A	SNP	MOS	ENST00000311923	human	ensembl	74_37	-1	known	missense	c.905	p.A302V	0.021	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOS	HGNC	ENSG00000172680				84	0	0	38	8	17.3913
MCPH1	0	genome.wustl.edu	37	8	6266828	6266828	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	6266828	6266828	A	G	SNP	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	silent	c.51	p.S17	0.983	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				128	0	0	40	4	9.09091
VCPIP1	0	genome.wustl.edu	37	8	67577678	67577678	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	67577678	67577678	T	C	SNP	VCPIP1	ENST00000310421	human	ensembl	74_37	-1	known	missense	c.1516	p.K506E	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073				335	0	0	161	33	17.0103
SLCO5A1	0	genome.wustl.edu	37	8	70617426	70617426	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	70617426	70617426	G	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	74_37	-1	known	missense	c.1462	p.L488I	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571				139	0	0	61	10	14.0845
GDAP1	0	genome.wustl.edu	37	8	75276270	75276270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	75276270	75276270	G	A	SNP	GDAP1	ENST00000220822	human	ensembl	74_37	+1	known	missense	c.745	p.V249I	1.000	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1	HGNC	ENSG00000104381				102	0	0	35	7	16.6667
SGK223	0	genome.wustl.edu	37	8	8234263	8234263	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	8234263	8234263	T	C	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	silent	c.1656	p.V552	0.344	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				136	0	0	37	11	22.9167
SGK223	0	genome.wustl.edu	37	8	8234544	8234544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	8234544	8234544	G	A	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	missense	c.1375	p.R459W	0.068	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				69	0	0	22	5	18.5185
FABP4	0	genome.wustl.edu	37	8	82391069	82391069	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	82391069	82391069	C	T	SNP	FABP4	ENST00000518669	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.933	-	-	-	no_errors	FABP4	HGNC	ENSG00000170323				101	0	0	47	8	14.5455
RBM12B	0	genome.wustl.edu	37	8	94746562	94746562	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	94746562	94746562	G	A	SNP	RBM12B	ENST00000399300	human	ensembl	74_37	-1	known	nonsense	c.2077	p.R693*	0.663	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808				287	1	0.347222	148	29	16.3842
INTS8	0	genome.wustl.edu	37	8	95837172	95837172	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	95837172	95837172	C	A	SNP	INTS8	ENST00000523731	human	ensembl	74_37	+1	known	missense	c.182	p.P61H	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941				89	0	0	46	5	9.80392
KCNS2	0	genome.wustl.edu	37	8	99440481	99440481	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	99440481	99440481	G	A	SNP	KCNS2	ENST00000287042	human	ensembl	74_37	+1	known	missense	c.274	p.V92I	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486				198	1	0.502513	58	13	18.3099
ANKS6	0	genome.wustl.edu	37	9	101552769	101552769	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	101552769	101552769	A	G	SNP	ANKS6	ENST00000375018	human	ensembl	74_37	-1	known	missense	c.479	p.V160A	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138				56	0	0	14	3	17.6471
BAAT	0	genome.wustl.edu	37	9	104124952	104124952	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	104124952	104124952	G	T	SNP	BAAT	ENST00000259407	human	ensembl	74_37	-1	known	missense	c.1015	p.Q339K	0.004	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881				147	1	0.675676	67	17	20.2381
CTNNAL1	0	genome.wustl.edu	37	9	111746708	111746708	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	111746708	111746708	T	A	SNP	CTNNAL1	ENST00000325551	human	ensembl	74_37	-1	known	missense	c.648	p.K216N	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	-	no_errors	CTNNAL1	HGNC	ENSG00000119326				154	0	0	69	11	13.75
RGS3	0	genome.wustl.edu	37	9	116269637	116269637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	116269637	116269637	G	A	SNP	RGS3	ENST00000350696	human	ensembl	74_37	+1	known	missense	c.1156	p.G386R	0.771	NULL	pfam_RGS_dom,pfam_C2_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_C2_dom,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				87	0	0	24	6	20
C9orf91	0	genome.wustl.edu	37	9	117405501	117405501	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	117405501	117405501	C	T	SNP	C9orf91	ENST00000374049	human	ensembl	74_37	+1	known	nonsense	c.940	p.R314*	0.040	NULL	NULL	-	no_errors	C9orf91	HGNC	ENSG00000157693				220	1	0.452489	73	15	17.0455
TNC	0	genome.wustl.edu	37	9	117846648	117846648	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	117846648	117846648	C	T	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	silent	c.1971	p.T657	0.113	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				99	0	0	49	18	26.8657
TRIM32	0	genome.wustl.edu	37	9	119460295	119460295	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	119460295	119460295	A	G	SNP	TRIM32	ENST00000373983	human	ensembl	74_37	+1	known	missense	c.274	p.S92G	1.000	NULL	pfam_NHL_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM32	HGNC	ENSG00000119401				147	0	0	58	4	6.45161
OR1J4	0	genome.wustl.edu	37	9	125281745	125281745	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	125281745	125281745	A	G	SNP	OR1J4	ENST00000340750	human	ensembl	74_37	+1	known	missense	c.326	p.D109G	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1J4	HGNC	ENSG00000239590				210	0	0	113	24	17.5182
LRSAM1	0	genome.wustl.edu	37	9	130223460	130223460	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	130223460	130223460	C	T	SNP	LRSAM1	ENST00000300417	human	ensembl	74_37	+1	known	silent	c.330	p.N110	0.898	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356				131	0	0	63	10	13.6986
SWI5	0	genome.wustl.edu	37	9	131038608	131038608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	131038608	131038608	C	T	SNP	SWI5	ENST00000320188	human	ensembl	74_37	+1	known	missense	c.184	p.P62S	0.000	NULL	pfam_DNA-repair_Swi5	-	no_errors	SWI5	HGNC	ENSG00000175854				45	0	0	14	6	30
MPDZ	0	genome.wustl.edu	37	9	13150616	13150616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	13150616	13150616	C	T	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.3524	p.R1175Q	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				167	0	0	70	16	18.6047
FAM73B	0	genome.wustl.edu	37	9	131830576	131830576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	131830576	131830576	C	T	SNP	FAM73B	ENST00000358369	human	ensembl	74_37	+1	known	missense	c.1369	p.R457W	0.981	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73B	HGNC	ENSG00000148343				57	0	0	39	8	17.0213
CRAT	0	genome.wustl.edu	37	9	131862207	131862207	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	131862207	131862207	G	A	SNP	CRAT	ENST00000318080	human	ensembl	74_37	-1	known	silent	c.1023	p.Y341	0.306	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321				142	1	0.699301	47	14	22.9508
USP20	0	genome.wustl.edu	37	9	132630616	132630616	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	132630616	132630616	G	A	SNP	USP20	ENST00000315480	human	ensembl	74_37	+1	known	silent	c.1023	p.S341	0.141	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP20	HGNC	ENSG00000136878				184	0	0	53	7	11.6667
GTF3C4	0	genome.wustl.edu	37	9	135553410	135553410	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	135553410	135553410	C	T	SNP	GTF3C4	ENST00000372146	human	ensembl	74_37	+1	known	missense	c.404	p.A135V	0.399	NULL	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484				128	0	0	56	13	18.8406
MED22	0	genome.wustl.edu	37	9	136208458	136208458	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	136208458	136208458	G	A	SNP	MED22	ENST00000343730	human	ensembl	74_37	-1	known	missense	c.500	p.S167L	0.417	NULL	pfam_Mediator_Med22	-	no_errors	MED22	HGNC	ENSG00000148297				67	0	0	21	3	12.5
SNAPC4	0	genome.wustl.edu	37	9	139272011	139272011	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	139272011	139272011	G	T	SNP	SNAPC4	ENST00000298532	human	ensembl	74_37	-1	known	missense	c.4268	p.A1423D	0.001	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684				101	0	0	25	6	19.3548
SNAPC4	0	genome.wustl.edu	37	9	139287157	139287157	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	139287157	139287157	G	A	SNP	SNAPC4	ENST00000298532	human	ensembl	74_37	-1	known	silent	c.705	p.G235	0.000	smart_SANT/Myb	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684				145	0	0	76	11	12.6437
SEC16A	0	genome.wustl.edu	37	9	139358902	139358902	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	139358902	139358902	C	T	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	silent	c.4416	p.Q1472	1.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				66	0	0	23	3	11.5385
FAM69B	0	genome.wustl.edu	37	9	139612048	139612048	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	139612048	139612048	G	A	SNP	FAM69B	ENST00000371692	human	ensembl	74_37	+1	known	missense	c.83	p.R28K	1.000	NULL	pfam_FAM69_kinase_dom	-	no_errors	FAM69B	HGNC	ENSG00000165716				54	0	0	18	6	25
ABCA2	0	genome.wustl.edu	37	9	139905597	139905597	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	139905597	139905597	C	T	SNP	ABCA2	ENST00000459850	human	ensembl	74_37	-1	known	silent	c.6051	p.P2017	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331				138	1	0.719424	36	7	16.2791
ABCA2	0	genome.wustl.edu	37	9	139907311	139907311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	139907311	139907311	G	A	SNP	ABCA2	ENST00000265662	human	ensembl	74_37	-1	known	missense	c.4934	p.A1645V	0.920	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331				23	0	0	11	3	21.4286
TPRN	0	genome.wustl.edu	37	9	140093982	140093982	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	140093982	140093982	G	A	SNP	TPRN	ENST00000409012	human	ensembl	74_37	-1	known	silent	c.1182	p.V394	0.000	NULL	NULL	-	no_errors	TPRN	HGNC	ENSG00000176058				12	0	0	5	2	28.5714
PNPLA7	0	genome.wustl.edu	37	9	140355976	140355976	+	RNA	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	140355976	140355976	G	A	SNP	PNPLA7	ENST00000469998	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PNPLA7	HGNC	ENSG00000130653				49	0	0	17	5	22.7273
ARRDC1	0	genome.wustl.edu	37	9	140508544	140508544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	140508544	140508544	G	A	SNP	ARRDC1	ENST00000371421	human	ensembl	74_37	+1	known	missense	c.496	p.V166M	0.924	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC1	HGNC	ENSG00000197070				240	0	0	98	21	17.6471
FREM1	0	genome.wustl.edu	37	9	14813042	14813042	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	14813042	14813042	C	T	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	silent	c.2664	p.E888	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				185	0	0	71	20	21.978
SMARCA2	0	genome.wustl.edu	37	9	2110347	2110347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	2110347	2110347	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.3386	p.G1129D	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				122	0	0	43	3	6.52174
IFNA13	0	genome.wustl.edu	37	9	21367455	21367455	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	21367455	21367455	T	C	SNP	IFNA13	ENST00000449498	human	ensembl	74_37	-1	known	silent	c.555	p.R185	0.037	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA13	HGNC	ENSG00000233816				295	0	0	136	12	8.10811
KIAA0020	0	genome.wustl.edu	37	9	2829847	2829847	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	2829847	2829847	T	C	SNP	KIAA0020	ENST00000397885	human	ensembl	74_37	-1	known	missense	c.779	p.N260S	1.000	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608				404	0	0	172	35	16.9082
RFX3	0	genome.wustl.edu	37	9	3225156	3225156	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	3225156	3225156	G	A	SNP	RFX3	ENST00000382004	human	ensembl	74_37	-1	known	silent	c.2136	p.L712	0.147	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298				66	0	0	34	7	17.0732
SMU1	0	genome.wustl.edu	37	9	33073797	33073797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	33073797	33073797	G	A	SNP	SMU1	ENST00000397149	human	ensembl	74_37	-1	known	missense	c.34	p.R12C	1.000	smart_LisH_dimerisation,pfscan_LisH_dimerisation	pfam_WD40_repeat,pfam_Nucleoporin_Nup160,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SMU1	HGNC	ENSG00000122692				95	0	0	35	8	18.6047
TLN1	0	genome.wustl.edu	37	9	35713993	35713993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	35713993	35713993	G	A	SNP	TLN1	ENST00000314888	human	ensembl	74_37	-1	known	missense	c.3206	p.A1069V	1.000	NULL	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN1	HGNC	ENSG00000137076				137	0	0	58	6	9.375
ZCCHC7	0	genome.wustl.edu	37	9	37126323	37126323	+	RNA	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	37126323	37126323	A	C	SNP	ZCCHC7	ENST00000461038	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.466	-	-	-	no_errors	ZCCHC7	HGNC	ENSG00000147905				167	0	0	94	15	13.7615
GLIS3	0	genome.wustl.edu	37	9	4118080	4118080	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	4118080	4118080	C	T	SNP	GLIS3	ENST00000381971	human	ensembl	74_37	-1	known	silent	c.1398	p.A466	0.741	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS3	HGNC	ENSG00000107249				74	0	0	32	9	21.9512
PGM5	0	genome.wustl.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	70993145	70993145	A	G	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.292	p.I98V	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				113	0	0	68	8	10.5263
TRPM3	0	genome.wustl.edu	37	9	73233803	73233803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	73233803	73233803	G	A	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.2383	p.R795C	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				78	0	0	41	7	14.5833
PCSK5	0	genome.wustl.edu	37	9	78803568	78803568	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	78803568	78803568	A	G	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	missense	c.2357	p.H786R	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_EG-like_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				164	0	0	55	9	14.0625
PCSK5	0	genome.wustl.edu	37	9	78925658	78925658	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	78925658	78925658	A	G	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	missense	c.3694	p.T1232A	0.000	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				38	0	0	29	3	9.375
PCSK5	0	genome.wustl.edu	37	9	78936358	78936358	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	78936358	78936358	G	A	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	missense	c.3824	p.G1275D	0.002	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_Furin_repeat	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				98	0	0	44	6	12
CDK20	0	genome.wustl.edu	37	9	90585494	90585494	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	90585494	90585494	G	A	SNP	CDK20	ENST00000325303	human	ensembl	74_37	-1	known	silent	c.552	p.G184	0.926	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK20	HGNC	ENSG00000156345				59	0	0	19	6	24
ASPN	0	genome.wustl.edu	37	9	95228784	95228784	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	95228784	95228784	G	A	SNP	ASPN	ENST00000375544	human	ensembl	74_37	-1	known	nonsense	c.457	p.R153*	0.996	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	ASPN	HGNC	ENSG00000106819				243	0	0	107	18	14.4
WWC3	0	genome.wustl.edu	37	X	10077877	10077877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	10077877	10077877	C	T	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.791	p.A264V	0.996	NULL	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				344	0	0	91	18	16.5138
TCEAL7	0	genome.wustl.edu	37	X	102586399	102586399	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	102586399	102586399	G	A	SNP	TCEAL7	ENST00000332431	human	ensembl	74_37	+1	known	missense	c.68	p.R23H	0.001	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL7	HGNC	ENSG00000182916				54	0	0	12	5	29.4118
MID2	0	genome.wustl.edu	37	X	107169389	107169389	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	107169389	107169389	C	T	SNP	MID2	ENST00000262843	human	ensembl	74_37	+1	known	nonsense	c.1663	p.Q555*	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID2	HGNC	ENSG00000080561				205	0	0	102	24	19.0476
COL4A6	0	genome.wustl.edu	37	X	107423838	107423838	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	107423838	107423838	G	A	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	nonsense	c.2041	p.R681*	0.002	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565				36	0	0	24	3	11.1111
GUCY2F	0	genome.wustl.edu	37	X	108635326	108635326	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	108635326	108635326	A	G	SNP	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	silent	c.2595	p.V865	0.999	pfam_Haem_no_assoc-bd,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890				140	0	0	44	9	16.9811
SLC25A43	0	genome.wustl.edu	37	X	118540544	118540544	+	Silent	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	118540544	118540544	C	A	SNP	SLC25A43	ENST00000217909	human	ensembl	74_37	+1	known	silent	c.397	p.R133	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A43	HGNC	ENSG00000077713				129	0	0	62	20	24.3902
TENM1	0	genome.wustl.edu	37	X	123787483	123787483	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	123787483	123787483	G	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.1319	p.S440Y	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				306	0	0	147	26	15.0289
BCORL1	0	genome.wustl.edu	37	X	129147983	129147983	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	129147983	129147983	C	T	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	missense	c.1235	p.P412L	0.990	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				66	0	0	17	7	29.1667
ZNF280C	0	genome.wustl.edu	37	X	129364678	129364678	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	129364678	129364678	A	G	SNP	ZNF280C	ENST00000370978	human	ensembl	74_37	-1	known	silent	c.795	p.T265	0.006	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277				145	0	0	48	12	20
TLR8	0	genome.wustl.edu	37	X	12939421	12939421	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	12939421	12939421	C	T	SNP	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	silent	c.2262	p.S754	0.001	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				208	0	0	95	28	22.7642
ARHGAP36	0	genome.wustl.edu	37	X	130222661	130222661	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	130222661	130222661	G	T	SNP	ARHGAP36	ENST00000276211	human	ensembl	74_37	+1	known	nonsense	c.1546	p.G516*	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256				67	0	0	24	4	14.2857
HS6ST2	0	genome.wustl.edu	37	X	132092382	132092382	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	132092382	132092382	G	A	SNP	HS6ST2	ENST00000521489	human	ensembl	74_37	-1	known	silent	c.249	p.C83	0.998	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST2	HGNC	ENSG00000171004				33	0	0	8	3	27.2727
FAM127C	0	genome.wustl.edu	37	X	134156235	134156235	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	134156235	134156235	C	A	SNP	FAM127C	ENST00000391440	human	ensembl	74_37	-1	known	missense	c.255	p.K85N	0.837	NULL	NULL	-	no_errors	FAM127C	HGNC	ENSG00000212747				144	0	0	46	12	20.6897
MAGEA11	0	genome.wustl.edu	37	X	148797716	148797716	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	148797716	148797716	G	A	SNP	MAGEA11	ENST00000355220	human	ensembl	74_37	+1	known	silent	c.570	p.G190	0.001	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA11	HGNC	ENSG00000185247				124	0	0	66	20	23.2558
MAGEA10	0	genome.wustl.edu	37	X	151303922	151303922	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	151303922	151303922	A	G	SNP	MAGEA10	ENST00000244096	human	ensembl	74_37	-1	known	silent	c.171	p.S57	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA10	HGNC	ENSG00000124260				153	1	0.649351	89	19	17.5926
CETN2	0	genome.wustl.edu	37	X	151997576	151997576	+	RNA	SNP	T	T	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	151997576	151997576	T	G	SNP	CETN2	ENST00000493482	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CETN2	HGNC	ENSG00000147400				40	0	0	30	6	16.6667
FAM58A	0	genome.wustl.edu	37	X	152860096	152860096	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	152860096	152860096	C	T	SNP	FAM58A	ENST00000406277	human	ensembl	74_37	-1	known	missense	c.332	p.R111H	0.681	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	FAM58A	HGNC	ENSG00000147382				113	0	0	55	8	12.6984
L1CAM	0	genome.wustl.edu	37	X	153128940	153128940	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	153128940	153128940	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	silent	c.3528	p.G1176	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				78	0	0	20	10	33.3333
AVPR2	0	genome.wustl.edu	37	X	153171714	153171714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	153171714	153171714	C	T	SNP	AVPR2	ENST00000337474	human	ensembl	74_37	+1	known	missense	c.754	p.R252W	0.706	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895				140	1	0.70922	43	13	23.2143
HCFC1	0	genome.wustl.edu	37	X	153228708	153228708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	153228708	153228708	C	T	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	missense	c.680	p.C227Y	1.000	pfam_Kelch_2	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				239	1	0.416667	112	11	8.94309
UBL4A	0	genome.wustl.edu	37	X	153714222	153714222	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	153714222	153714222	G	A	SNP	UBL4A	ENST00000369660	human	ensembl	74_37	-1	known	missense	c.251	p.A84V	0.000	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBL4A	HGNC	ENSG00000102178				311	0	0	112	26	18.8406
P2RY8	0	genome.wustl.edu	37	X	1584880	1584880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	1584880	1584880	G	A	SNP	P2RY8	ENST00000381297	human	ensembl	74_37	-1	known	missense	c.572	p.A191V	0.959	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	P2RY8	HGNC	ENSG00000182162				64	0	0	35	5	12.5
GRPR	0	genome.wustl.edu	37	X	16142438	16142438	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	16142438	16142438	T	C	SNP	GRPR	ENST00000380289	human	ensembl	74_37	+1	known	missense	c.362	p.L121P	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Bombsn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Bombsn_rcpt,prints_Gastrin_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GRPR	HGNC	ENSG00000126010				215	0	0	90	23	20.354
CTPS2	0	genome.wustl.edu	37	X	16717193	16717193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	16717193	16717193	C	T	SNP	CTPS2	ENST00000359276	human	ensembl	74_37	-1	known	missense	c.190	p.G64S	1.000	pfam_CTP_synthase_N,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	pfam_CTP_synthase_N,pfam_GATASE,pfam_Peptidase_C26,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	-	no_errors	CTPS2	HGNC	ENSG00000047230				250	0	0	126	20	13.6986
SYAP1	0	genome.wustl.edu	37	X	16778386	16778386	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	16778386	16778386	G	T	SNP	SYAP1	ENST00000380155	human	ensembl	74_37	+1	known	missense	c.963	p.Q321H	0.970	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	SYAP1	HGNC	ENSG00000169895				192	0	0	108	25	18.797
SH3KBP1	0	genome.wustl.edu	37	X	19610206	19610206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	19610206	19610206	G	A	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	missense	c.1117	p.P373S	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				237	0	0	73	17	18.8889
PTCHD1	0	genome.wustl.edu	37	X	23397938	23397938	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	23397938	23397938	C	T	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	silent	c.582	p.G194	0.316	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186				303	0	0	148	14	8.64198
ZFX	0	genome.wustl.edu	37	X	24226349	24226349	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	24226349	24226349	G	A	SNP	ZFX	ENST00000540034	human	ensembl	74_37	+1	known	missense	c.1072	p.A358T	0.987	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889				156	0	0	58	14	19.4444
DCAF8L1	0	genome.wustl.edu	37	X	27999217	27999217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	27999217	27999217	C	T	SNP	DCAF8L1	ENST00000441525	human	ensembl	74_37	-1	known	missense	c.235	p.V79I	0.458	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372				264	0	0	110	17	13.3858
MAGEB1	0	genome.wustl.edu	37	X	30269409	30269409	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	30269409	30269409	C	T	SNP	MAGEB1	ENST00000378981	human	ensembl	74_37	+1	known	missense	c.799	p.R267C	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107				175	0	0	54	15	21.7391
DMD	0	genome.wustl.edu	37	X	31986498	31986498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	31986498	31986498	C	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.6572	p.R2191Q	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				252	0	0	88	21	19.2661
DMD	0	genome.wustl.edu	37	X	32481587	32481587	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	32481587	32481587	A	C	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.3401	p.L1134R	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				35	0	0	23	7	23.3333
CYBB	0	genome.wustl.edu	37	X	37655252	37655252	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	37655252	37655252	A	G	SNP	CYBB	ENST00000378588	human	ensembl	74_37	+1	known	missense	c.532	p.T178A	1.000	pfam_Fe3_Rdtase_TM_dom,prints_Cyt_b245_heavy_chain	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	CYBB	HGNC	ENSG00000165168				162	0	0	74	6	7.5
MED14	0	genome.wustl.edu	37	X	40522275	40522275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	40522275	40522275	G	A	SNP	MED14	ENST00000324817	human	ensembl	74_37	-1	known	missense	c.3586	p.P1196S	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182				65	0	0	23	4	14.8148
ZNF674	0	genome.wustl.edu	37	X	46387797	46387797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	46387797	46387797	G	A	SNP	ZNF674	ENST00000523374	human	ensembl	74_37	-1	known	missense	c.226	p.R76W	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF674	HGNC	ENSG00000251192				186	1	0.534759	62	17	21.519
TBC1D25	0	genome.wustl.edu	37	X	48417659	48417659	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	48417659	48417659	C	T	SNP	TBC1D25	ENST00000376771	human	ensembl	74_37	+1	known	silent	c.630	p.H210	0.493	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354				56	0	0	16	7	30.4348
HDAC6	0	genome.wustl.edu	37	X	48674553	48674553	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	48674553	48674553	A	G	SNP	HDAC6	ENST00000444343	human	ensembl	74_37	+1	known	missense	c.1541	p.H514R	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631				216	0	0	68	18	20.9302
PQBP1	0	genome.wustl.edu	37	X	48759692	48759692	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	48759692	48759692	C	T	SNP	PQBP1	ENST00000218224	human	ensembl	74_37	+1	known	missense	c.475	p.R159W	0.613	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	PQBP1	HGNC	ENSG00000102103				52	0	0	22	5	18.5185
WDR45	0	genome.wustl.edu	37	X	48933234	48933234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	48933234	48933234	C	T	SNP	WDR45	ENST00000322995	human	ensembl	74_37	-1	known	missense	c.728	p.R243H	0.997	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR45	HGNC	ENSG00000196998				91	0	0	34	5	12.8205
GPKOW	0	genome.wustl.edu	37	X	48973467	48973467	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	48973467	48973467	A	G	SNP	GPKOW	ENST00000156109	human	ensembl	74_37	-1	known	missense	c.830	p.V277A	0.000	superfamily_Translation_prot_SH3-like	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394				128	0	0	50	6	10.7143
DGKK	0	genome.wustl.edu	37	X	50136226	50136226	+	RNA	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	50136226	50136226	C	T	SNP	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.526	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466				76	0	0	17	12	41.3793
KDM5C	0	genome.wustl.edu	37	X	53240993	53240993	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	53240993	53240993	A	G	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	silent	c.1218	p.A406	0.467	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				52	0	0	32	7	17.9487
IQSEC2	0	genome.wustl.edu	37	X	53279577	53279577	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	53279577	53279577	G	A	SNP	IQSEC2	ENST00000396435	human	ensembl	74_37	-1	known	silent	c.2181	p.T727	0.195	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_P-loop_NTPase,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC2	HGNC	ENSG00000124313				57	0	0	23	9	28.125
FAM120C	0	genome.wustl.edu	37	X	54209257	54209257	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	54209257	54209257	C	T	SNP	FAM120C	ENST00000375180	human	ensembl	74_37	-1	known	silent	c.375	p.A125	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083				49	0	0	8	4	33.3333
PFKFB1	0	genome.wustl.edu	37	X	54986275	54986275	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	54986275	54986275	C	T	SNP	PFKFB1	ENST00000375006	human	ensembl	74_37	-1	known	silent	c.369	p.E123	1.000	pfam_6Phosfructo_kin,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB1	HGNC	ENSG00000158571				47	0	0	13	4	23.5294
ALAS2	0	genome.wustl.edu	37	X	55042055	55042055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	55042055	55042055	C	T	SNP	ALAS2	ENST00000330807	human	ensembl	74_37	-1	known	missense	c.1124	p.R375H	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578				90	0	0	46	6	11.5385
ALAS2	0	genome.wustl.edu	37	X	55052394	55052394	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	55052394	55052394	G	A	SNP	ALAS2	ENST00000330807	human	ensembl	74_37	-1	known	missense	c.40	p.L14F	0.217	pfam_5aminolev_synth_preseq	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578				61	0	0	36	7	16.2791
USP51	0	genome.wustl.edu	37	X	55515175	55515175	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	55515175	55515175	G	A	SNP	USP51	ENST00000500968	human	ensembl	74_37	-1	known	silent	c.198	p.P66	0.000	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP51	HGNC	ENSG00000247746				99	0	0	19	5	20.8333
NLGN4X	0	genome.wustl.edu	37	X	5821701	5821701	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	5821701	5821701	A	T	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	missense	c.1078	p.F360I	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				210	0	0	80	8	9.09091
MSN	0	genome.wustl.edu	37	X	64887722	64887722	+	Splice_Site	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	64887722	64887722	T	C	SNP	MSN	ENST00000360270	human	ensembl	74_37	+1	known	splice_site	c.12+2	e1+2	1.000	-	-	-	no_errors	MSN	HGNC	ENSG00000147065				44	0	0	22	5	18.5185
RAB41	0	genome.wustl.edu	37	X	69502190	69502190	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	69502190	69502190	C	T	SNP	RAB41	ENST00000374473	human	ensembl	74_37	+1	known	silent	c.123	p.S41	0.007	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB41	HGNC	ENSG00000147127				122	0	0	37	5	11.9048
SLC7A3	0	genome.wustl.edu	37	X	70149828	70149828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	70149828	70149828	C	T	SNP	SLC7A3	ENST00000298085	human	ensembl	74_37	-1	known	missense	c.20	p.R7H	0.969	tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349				118	0	0	55	9	14.0625
FOXO4	0	genome.wustl.edu	37	X	70316714	70316714	+	Splice_Site	SNP	G	G	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	70316714	70316714	G	T	SNP	FOXO4	ENST00000341558	human	ensembl	74_37	+1	known	splice_site	c.172-1	e2-1	1.000	-	-	-	no_errors	FOXO4	HGNC	ENSG00000184481				25	0	0	13	4	23.5294
CXorf65	0	genome.wustl.edu	37	X	70326403	70326403	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	70326403	70326403	A	G	SNP	CXorf65	ENST00000374251	human	ensembl	74_37	-1	known	missense	c.4	p.F2L	0.904	NULL	NULL	-	no_errors	CXorf65	HGNC	ENSG00000204165				274	0	0	110	18	14.0625
MED12	0	genome.wustl.edu	37	X	70356410	70356410	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	70356410	70356410	A	C	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	missense	c.5305	p.T1769P	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				27	0	0	7	3	30
MED12	0	genome.wustl.edu	37	X	70360614	70360614	+	Silent	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	70360614	70360614	G	A	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	silent	c.6183	p.Q2061	0.999	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				127	0	0	68	4	5.55556
MED12	0	genome.wustl.edu	37	X	70360623	70360623	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	70360623	70360623	A	G	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	silent	c.6192	p.Q2064	0.903	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				114	0	0	59	7	10.6061
MED12	0	genome.wustl.edu	37	X	70360647	70360647	+	Silent	SNP	A	A	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	70360647	70360647	A	G	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	silent	c.6216	p.Q2072	0.341	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				77	0	0	52	6	10.3448
ATP7A	0	genome.wustl.edu	37	X	77267084	77267084	+	Silent	SNP	T	T	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	77267084	77267084	T	C	SNP	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	silent	c.2085	p.L695	0.989	NULL	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				386	0	0	186	31	14.2857
NAP1L3	0	genome.wustl.edu	37	X	92927974	92927974	+	Silent	SNP	C	C	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	92927974	92927974	C	T	SNP	NAP1L3	ENST00000373079	human	ensembl	74_37	-1	known	silent	c.330	p.A110	0.681	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310				63	0	0	33	4	10.8108
TNMD	0	genome.wustl.edu	37	X	99854133	99854133	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	99854133	99854133	G	A	SNP	TNMD	ENST00000373031	human	ensembl	74_37	+1	known	missense	c.698	p.R233H	0.998	NULL	pfam_BRICHOS_dom,superfamily_Chitin-bd_1,pfscan_BRICHOS_dom	-	no_errors	TNMD	HGNC	ENSG00000000005				59	0	0	21	4	16
SASS6	0	genome.wustl.edu	37	1	100588802	100588802	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	100588802	100588802	A	-	DEL	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	frame_shift_del	c.170	p.L57fs	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				44	0	0	27	8	22.8571
WDR47	0	genome.wustl.edu	37	1	109560141	109560141	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	109560141	109560141	T	-	DEL	WDR47	ENST00000400794	human	ensembl	74_37	-1	known	frame_shift_del	c.241	p.R81fs	1.000	smart_CTLH_C,pfscan_CTLH_C	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433				85	0	0	53	7	11.6667
CSDE1	0	genome.wustl.edu	37	1	115280605	115280608	+	Frame_Shift_Del	DEL	AGGG	AGGG	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AGGG	AGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	115280605	115280608	AGGG	-	DEL	CSDE1	ENST00000369530	human	ensembl	74_37	-1	known	frame_shift_del	c.426_423	p.P142fs	1.000:1.000:1.000:0.999	superfamily_NA-bd_OB-fold	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307				193	0	0	85	7	7.6087
TTF2	0	genome.wustl.edu	37	1	117644048	117644049	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	117644048	117644049	-	A	INS	TTF2	ENST00000369466	human	ensembl	74_37	+1	known	frame_shift_ins	c.3391_3392	p.K1134fs	0.994:0.536	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830				239	0	0	127	21	14.1892
RPRD2	0	genome.wustl.edu	37	1	150443735	150443735	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	150443735	150443735	C	-	DEL	RPRD2	ENST00000369068	human	ensembl	74_37	+1	known	frame_shift_del	c.2311	p.P772fs	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_CID_dom	-	no_errors	RPRD2	HGNC	ENSG00000163125				82	0	0	39	5	11.3636
CDC42SE1	0	genome.wustl.edu	37	1	151028059	151028059	+	RNA	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	151028059	151028059	T	-	DEL	CDC42SE1	ENST00000491825	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDC42SE1	HGNC	ENSG00000197622				9	0	0	8	2	20
CREB3L4	0	genome.wustl.edu	37	1	153946103	153946103	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	153946103	153946103	T	-	DEL	CREB3L4	ENST00000271889	human	ensembl	74_37	+1	known	frame_shift_del	c.905	p.S304fs	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L4	HGNC	ENSG00000143578				36	0	0	14	5	26.3158
DEDD	0	genome.wustl.edu	37	1	161091815	161091816	+	RNA	DEL	AA	AA	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	161091815	161091816	AA	-	DEL	DEDD	ENST00000486041	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	DEDD	HGNC	ENSG00000158796				49	0	0	21	6	22.2222
UAP1	0	genome.wustl.edu	37	1	162549290	162549290	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	162549290	162549290	A	-	DEL	UAP1	ENST00000271469	human	ensembl	74_37	+1	known	frame_shift_del	c.558	p.E189fs	0.998	pfam_UDPGP_trans	pfam_UDPGP_trans	-	no_errors	UAP1	HGNC	ENSG00000117143				108	0	0	55	8	12.6984
HMCN1	0	genome.wustl.edu	37	1	186086701	186086701	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	186086701	186086701	A	-	DEL	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	frame_shift_del	c.11794	p.N3933fs	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				157	0	0	88	18	16.9811
DDX59	0	genome.wustl.edu	37	1	200594042	200594042	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	200594042	200594042	T	-	DEL	DDX59	ENST00000447706	human	ensembl	74_37	-1	known	frame_shift_del	c.1730	p.N577fs	0.001	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				70	0	0	33	6	15.3846
HSPG2	0	genome.wustl.edu	37	1	22176669	22176669	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	22176669	22176669	G	-	DEL	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	frame_shift_del	c.7311	p.T2438fs	0.850	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				162	0	0	70	13	15.6627
FBXO28	0	genome.wustl.edu	37	1	224301979	224301980	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	224301979	224301980	-	C	INS	FBXO28	ENST00000366862	human	ensembl	74_37	+1	known	frame_shift_ins	c.148_149	p.A52fs	0.000:0.004	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO28	HGNC	ENSG00000143756				15	0	0	4	2	33.3333
CCSAP	0	genome.wustl.edu	37	1	229462512	229462514	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	229462512	229462514	GTT	-	DEL	CCSAP	ENST00000284617	human	ensembl	74_37	-1	known	in_frame_del	c.609_607	p.N203in_frame_del	0.082:0.991:0.998	NULL	NULL	-	no_errors	CCSAP	HGNC	ENSG00000154429				179	1	0.555556	94	14	12.963
OR14I1	0	genome.wustl.edu	37	1	248844882	248844882	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	248844882	248844882	G	-	DEL	OR14I1	ENST00000342623	human	ensembl	74_37	-1	known	frame_shift_del	c.724	p.Q242fs	0.920	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR14I1	HGNC	ENSG00000189181				182	0	0	81	9	10
CNKSR1	0	genome.wustl.edu	37	1	26514777	26514778	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	26514777	26514778	-	C	INS	CNKSR1	ENST00000374253	human	ensembl	74_37	+1	known	frame_shift_ins	c.1528_1529	p.P513fs	0.000:0.000	NULL	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675				155	0	0	48	11	18.6441
WDTC1	0	genome.wustl.edu	37	1	27621107	27621108	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	27621107	27621108	-	G	INS	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	frame_shift_ins	c.860_861	p.E290fs	1.000:1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				78	0	0	29	11	27.5
CD164L2	0	genome.wustl.edu	37	1	27708756	27708756	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	27708756	27708756	G	-	DEL	CD164L2	ENST00000374025	human	ensembl	74_37	-1	known	frame_shift_del	c.390	p.R131fs	0.058	NULL	pfam_CD164_MGC24	-	no_errors	CD164L2	HGNC	ENSG00000174950				85	0	0	38	7	15.5556
MEGF6	0	genome.wustl.edu	37	1	3418429	3418429	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	3418429	3418429	C	-	DEL	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	frame_shift_del	c.2245	p.A749fs	0.930	smart_EG-like_dom,smart_EGF_laminin	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				105	0	0	36	7	16.2791
ZMYM6	0	genome.wustl.edu	37	1	35484912	35484912	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	35484912	35484912	A	-	DEL	ZMYM6	ENST00000317538	human	ensembl	74_37	-1	novel	frame_shift_del	c.470	p.L157fs	0.001	NULL	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM6	HGNC	ENSG00000163867				104	1	0.952381	50	16	24.2424
CCDC27	0	genome.wustl.edu	37	1	3688024	3688025	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	3688024	3688025	-	C	INS	CCDC27	ENST00000294600	human	ensembl	74_37	+1	known	frame_shift_ins	c.1908_1909	p.L638fs	0.063:0.211	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592				258	0	0	87	6	6.45161
LRRC41	0	genome.wustl.edu	37	1	46751494	46751495	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	46751494	46751495	-	G	INS	LRRC41	ENST00000343304	human	ensembl	74_37	-1	known	frame_shift_ins	c.1035_1034	p.A346fs	0.611:0.616	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128				136	0	0	62	7	10.1449
NDC1	0	genome.wustl.edu	37	1	54291559	54291559	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	54291559	54291559	A	-	DEL	NDC1	ENST00000371429	human	ensembl	74_37	-1	known	frame_shift_del	c.506	p.F169fs	0.998	pfam_Nucleoporin_prot_Ndc1/Nup	pfam_Nucleoporin_prot_Ndc1/Nup	-	no_errors	NDC1	HGNC	ENSG00000058804				145	0	0	78	12	13.3333
HOOK1	0	genome.wustl.edu	37	1	60314140	60314140	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	60314140	60314140	A	-	DEL	HOOK1	ENST00000371208	human	ensembl	74_37	+1	known	frame_shift_del	c.1083	p.A364fs	0.150	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709				148	0	0	88	11	11.1111
DOCK7	0	genome.wustl.edu	37	1	63090936	63090936	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	63090936	63090936	A	-	DEL	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	frame_shift_del	c.1419	p.F473fs	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641				236	0	0	102	30	22.7273
PKN2	0	genome.wustl.edu	37	1	89298819	89298819	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	89298819	89298819	A	-	DEL	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	frame_shift_del	c.2730	p.K912fs	0.032	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243				79	0	0	24	3	11.1111
GBP3	0	genome.wustl.edu	37	1	89473442	89473442	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	89473442	89473442	T	-	DEL	GBP3	ENST00000370481	human	ensembl	74_37	-1	known	frame_shift_del	c.1753	p.T585fs	0.000	NULL	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP3	HGNC	ENSG00000117226				255	2	0.77821	105	14	11.7647
ABCA4	0	genome.wustl.edu	37	1	94497458	94497458	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	94497458	94497458	G	-	DEL	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	frame_shift_del	c.4004	p.P1335fs	0.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				132	1	0.75188	53	10	15.873
LZIC	0	genome.wustl.edu	37	1	9990467	9990468	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	1	9990467	9990468	-	T	INS	LZIC	ENST00000541052	human	ensembl	74_37	-1	known	frame_shift_ins	c.626_625	p.T209fs	0.999:0.998	pfam_ICAT	pfam_ICAT,superfamily_ICAT	-	no_errors	LZIC	HGNC	ENSG00000162441				648	0	0	214	38	15.0794
ADD3	0	genome.wustl.edu	37	10	111893350	111893350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	111893350	111893350	A	-	DEL	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.K701fs	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				310	2	0.641026	75	11	12.7907
WDR37	0	genome.wustl.edu	37	10	1170870	1170870	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	1170870	1170870	A	-	DEL	WDR37	ENST00000263150	human	ensembl	74_37	+1	known	frame_shift_del	c.1259	p.I422fs	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR37	HGNC	ENSG00000047056				102	0	0	25	4	13.7931
SEC23IP	0	genome.wustl.edu	37	10	121674229	121674229	+	RNA	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	121674229	121674229	T	-	DEL	SEC23IP	ENST00000462222	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SEC23IP	HGNC	ENSG00000107651				170	1	0.584795	101	21	17.2131
FAM175B	0	genome.wustl.edu	37	10	126517968	126517969	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	126517968	126517969	-	T	INS	FAM175B	ENST00000298492	human	ensembl	74_37	+1	known	frame_shift_ins	c.585_586	p.D197fs	1.000:1.000	NULL	prints_FAM175_BRISC_cplx_Abro1_su,prints_FAM175	-	no_errors	FAM175B	HGNC	ENSG00000165660				117	0	0	64	6	8.57143
MYO3A	0	genome.wustl.edu	37	10	26385330	26385330	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	26385330	26385330	T	-	DEL	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	frame_shift_del	c.1583	p.Y530fs	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				69	0	0	22	9	29.0323
ENSG00000235939	0	genome.wustl.edu	37	10	50680934	50680934	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	50680934	50680934	A	-	DEL	ENSG00000235939	ENST00000423283	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-123B3.2	Clone_based_vega_gene	ENSG00000235939				41	0	0	12	10	45.4545
HK1	0	genome.wustl.edu	37	10	71144463	71144464	+	RNA	DEL	GT	GT	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	71144463	71144464	GT	-	DEL	HK1	ENST00000494253	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HK1	HGNC	ENSG00000156515				87	0	0	55	14	20.2899
PALD1	0	genome.wustl.edu	37	10	72299505	72299505	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	72299505	72299505	C	-	DEL	PALD1	ENST00000263563	human	ensembl	74_37	+1	known	frame_shift_del	c.1895	p.R634fs	1.000	NULL	smart_Tyr_Pase_cat	-	no_errors	PALD1	HGNC	ENSG00000107719				122	0	0	44	10	18.5185
ZSWIM8	0	genome.wustl.edu	37	10	75560464	75560464	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	10	75560464	75560464	C	-	DEL	ZSWIM8	ENST00000398706	human	ensembl	74_37	+1	known	frame_shift_del	c.5093	p.Y1701fs	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM8	HGNC	ENSG00000214655				242	0	0	82	15	15.4639
MUC6	0	genome.wustl.edu	37	11	1016540	1016543	+	Frame_Shift_Del	DEL	GAAG	GAAG	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	GAAG	GAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	1016540	1016543	GAAG	-	DEL	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	frame_shift_del	c.6261_6258	p.F2087fs	0.000:0.000:0.000:0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				476	0	0	165	22	11.7647
ATM	0	genome.wustl.edu	37	11	108114816	108114817	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	108114816	108114817	-	T	INS	ATM	ENST00000278616	human	ensembl	74_37	+1	known	frame_shift_ins	c.633_634	p.S213fs	0.765:0.976	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				79	0	0	56	8	12.5
KMT2A	0	genome.wustl.edu	37	11	118344185	118344186	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	118344185	118344186	-	C	INS	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	frame_shift_ins	c.2311_2312	p.S774fs	1.000:1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				314	0	0	125	29	18.8312
TMEM25	0	genome.wustl.edu	37	11	118405013	118405015	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	118405013	118405015	AAC	-	DEL	TMEM25	ENST00000533102	human	ensembl	74_37	+1	known	in_frame_del	c.967_969	p.N324in_frame_del	0.001:0.022:0.032	NULL	pfam_CD80_C2-set,pfscan_Ig-like_dom	-	no_errors	TMEM25	HGNC	ENSG00000149582				135	0	0	22	7	24.1379
UPK2	0	genome.wustl.edu	37	11	118827661	118827661	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	118827661	118827661	C	-	DEL	UPK2	ENST00000264031	human	ensembl	74_37	+1	known	frame_shift_del	c.145	p.C51fs	0.973	pfam_Uroplakin_II,pirsf_Uroplakin_II	pfam_Uroplakin_II,pirsf_Uroplakin_II	-	no_errors	UPK2	HGNC	ENSG00000110375				180	0	0	56	11	16.4179
MCAM	0	genome.wustl.edu	37	11	119185617	119185618	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	119185617	119185618	-	G	INS	MCAM	ENST00000264036	human	ensembl	74_37	-1	known	frame_shift_ins	c.326_325	p.Q109fs	0.771:0.905	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MCAM	HGNC	ENSG00000076706				250	0	0	86	14	14
OR8D4	0	genome.wustl.edu	37	11	123777442	123777442	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	123777442	123777442	T	-	DEL	OR8D4	ENST00000321355	human	ensembl	74_37	+1	known	frame_shift_del	c.304	p.F104fs	0.939	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D4	HGNC	ENSG00000181518				423	1	0.235849	201	27	11.8421
MUC5B	0	genome.wustl.edu	37	11	1251244	1251245	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	1251244	1251245	-	G	INS	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	frame_shift_ins	c.1239_1240	p.L415fs	0.000:0.000	smart_VWC_out,smart_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				101	0	0	36	11	23.4043
PRDM10	0	genome.wustl.edu	37	11	129780428	129780429	+	In_Frame_Ins	INS	-	-	CTG			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	129780428	129780429	-	CTG	INS	PRDM10	ENST00000358825	human	ensembl	74_37	-1	known	in_frame_ins	c.3118_3117	p.1039in_frame_insQ	0.011:0.107	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325				111	0	0	33	2	5.71429
KRTAP5-5	0	genome.wustl.edu	37	11	1651497	1651497	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	1651497	1651497	G	-	DEL	KRTAP5-5	ENST00000399676	human	ensembl	74_37	+1	known	frame_shift_del	c.427	p.S145fs	0.965	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940				306	0	0	79	15	15.9574
PLEKHA7	0	genome.wustl.edu	37	11	16822525	16822525	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	16822525	16822525	A	-	DEL	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	frame_shift_del	c.2405	p.F802fs	0.999	NULL	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689				344	1	0.289855	112	23	17.037
WT1-AS	0	genome.wustl.edu	37	11	32460527	32460527	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	32460527	32460527	A	-	DEL	WT1-AS	ENST00000395900	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WT1-AS	HGNC	ENSG00000183242				111	0	0	39	6	13.3333
CCDC73	0	genome.wustl.edu	37	11	32637520	32637520	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	32637520	32637520	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.1341	p.E448fs	0.000	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				63	0	0	31	5	13.8889
HIPK3	0	genome.wustl.edu	37	11	33358692	33358693	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	33358692	33358693	-	T	INS	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	frame_shift_ins	c.1293_1294	p.C433fs	1.000:1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				60	0	0	23	9	28.125
AMBRA1	0	genome.wustl.edu	37	11	46564574	46564575	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	46564574	46564575	-	G	INS	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	frame_shift_ins	c.993_992	p.A332fs	1.000:1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497				76	0	0	34	6	15
ENSG00000254815	0	genome.wustl.edu	37	11	558069	558069	+	RNA	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	558069	558069	G	-	DEL	ENSG00000254815	ENST00000527620	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-496I9.1	Clone_based_vega_gene	ENSG00000254815				95	0	0	26	6	18.75
RPLP0P2	0	genome.wustl.edu	37	11	61405179	61405179	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	61405179	61405179	A	-	DEL	RPLP0P2	ENST00000496593	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.975	-	-	-	no_errors	RPLP0P2	HGNC	ENSG00000243742				20	0	0	13	6	31.5789
PLCB3	0	genome.wustl.edu	37	11	64032517	64032517	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	64032517	64032517	C	-	DEL	PLCB3	ENST00000279230	human	ensembl	74_37	+1	known	frame_shift_del	c.2747	p.R918fs	0.006	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB3	HGNC	ENSG00000149782				25	0	0	8	5	38.4615
KAT5	0	genome.wustl.edu	37	11	65480453	65480454	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	65480453	65480454	-	C	INS	KAT5	ENST00000341318	human	ensembl	74_37	+1	known	frame_shift_ins	c.308_309	p.K105fs	1.000:1.000	superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_MOZ_SAS,pfam_Tudor-knot,superfamily_Acyl_CoA_acyltransferase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	KAT5	HGNC	ENSG00000172977				235	0	0	84	17	16.8317
KLC2	0	genome.wustl.edu	37	11	66033656	66033656	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	66033656	66033656	G	-	DEL	KLC2	ENST00000316924	human	ensembl	74_37	+1	known	frame_shift_del	c.1695	p.G567fs	1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC2	HGNC	ENSG00000174996				143	1	0.694444	37	9	19.5652
ENSG00000256518	0	genome.wustl.edu	37	11	71870036	71870036	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	71870036	71870036	A	-	DEL	ENSG00000256518	ENST00000542477	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	RP11-807H22.5	Clone_based_vega_gene	ENSG00000256518				198	0	0	63	10	13.6986
TSKU	0	genome.wustl.edu	37	11	76506673	76506675	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	76506673	76506675	CTG	-	DEL	TSKU	ENST00000333090	human	ensembl	74_37	+1	known	in_frame_del	c.13_15	p.L8in_frame_del	0.997:1.000:0.997	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	TSKU	HGNC	ENSG00000182704				104	0	0	48	4	7.69231
CYB5R2	0	genome.wustl.edu	37	11	7694036	7694037	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	7694036	7694037	CT	-	DEL	CYB5R2	ENST00000299498	human	ensembl	74_37	-1	known	frame_shift_del	c.21_20	p.E7fs	0.000:0.000	superfamily_Riboflavin_synthase-like_b-brl	pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	-	no_errors	CYB5R2	HGNC	ENSG00000166394				115	0	0	32	7	17.9487
RSF1	0	genome.wustl.edu	37	11	77413116	77413116	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	77413116	77413116	T	-	DEL	RSF1	ENST00000308488	human	ensembl	74_37	-1	known	frame_shift_del	c.1158	p.K386fs	0.995	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649				113	0	0	71	11	13.4146
FAT3	0	genome.wustl.edu	37	11	92258088	92258089	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	92258088	92258089	-	T	INS	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	frame_shift_ins	c.3581_3582	p.A1197fs	1.000:0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				90	0	0	26	8	23.5294
SCARNA9	0	genome.wustl.edu	37	11	93454921	93454921	+	RNA	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	93454921	93454921	G	-	DEL	SCARNA9	ENST00000530422	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	SCARNA9	HGNC	ENSG00000254911				38	0	0	29	4	12.1212
AP2A2	0	genome.wustl.edu	37	11	970195	970195	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	11	970195	970195	A	-	DEL	AP2A2	ENST00000332231	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.K57fs	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020				257	1	0.387597	87	15	14.7059
TAS2R8	0	genome.wustl.edu	37	12	10958846	10958846	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	10958846	10958846	A	-	DEL	TAS2R8	ENST00000240615	human	ensembl	74_37	-1	known	frame_shift_del	c.734	p.F245fs	0.001	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAS2R8	HGNC	ENSG00000121314				69	0	0	52	10	16.129
TAS2R42	0	genome.wustl.edu	37	12	11338798	11338799	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	11338798	11338799	-	A	INS	TAS2R42	ENST00000334266	human	ensembl	74_37	-1	known	frame_shift_ins	c.746_745	p.S249fs	0.000:0.015	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAS2R42	HGNC	ENSG00000186136				140	1	0.70922	50	8	13.7931
SBNO1	0	genome.wustl.edu	37	12	123794283	123794283	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	123794283	123794283	T	-	DEL	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	frame_shift_del	c.3416	p.N1139fs	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697				205	0	0	111	21	15.9091
TESPA1	0	genome.wustl.edu	37	12	55357624	55357624	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	55357624	55357624	A	-	DEL	TESPA1	ENST00000316577	human	ensembl	74_37	-1	known	frame_shift_del	c.557	p.F186fs	1.000	NULL	NULL	-	no_errors	TESPA1	HGNC	ENSG00000135426				156	0	0	51	13	20.3125
ARHGAP9	0	genome.wustl.edu	37	12	57870384	57870384	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	57870384	57870384	C	-	DEL	ARHGAP9	ENST00000356411	human	ensembl	74_37	-1	known	frame_shift_del	c.1014	p.R339fs	0.995	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329				273	1	0.364964	123	15	10.8696
USP15	0	genome.wustl.edu	37	12	62687993	62687994	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	62687993	62687994	-	A	INS	USP15	ENST00000280377	human	ensembl	74_37	+1	known	frame_shift_ins	c.123_124	p.Y43fs	1.000:1.000	pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67	-	no_errors	USP15	HGNC	ENSG00000135655				78	0	0	51	6	10.5263
NCAPD2	0	genome.wustl.edu	37	12	6635473	6635473	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	6635473	6635473	C	-	DEL	NCAPD2	ENST00000315579	human	ensembl	74_37	+1	known	frame_shift_del	c.2502	p.F837fs	0.789	superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292				208	0	0	60	14	18.9189
TMBIM4	0	genome.wustl.edu	37	12	66531937	66531937	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	66531937	66531937	A	-	DEL	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	frame_shift_del	c.520	p.Y174fs	0.028	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				89	0	0	35	7	16.6667
CHD4	0	genome.wustl.edu	37	12	6711546	6711546	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	12	6711546	6711546	T	-	DEL	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	frame_shift_del	c.218	p.K73fs	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				523	0	0	284	53	15.727
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				31	0	0	23	6	20.6897
NBEA	0	genome.wustl.edu	37	13	35733662	35733663	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	35733662	35733663	-	A	INS	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	frame_shift_ins	c.3354_3355	p.N1120fs	1.000:1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				78	0	0	22	10	31.25
SPG20	0	genome.wustl.edu	37	13	36909272	36909272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	36909272	36909272	A	-	DEL	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	frame_shift_del	c.696	p.F232fs	1.000	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				150	0	0	48	19	28.3582
PCDH20	0	genome.wustl.edu	37	13	61986570	61986571	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	61986570	61986571	-	A	INS	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	frame_shift_ins	c.1662_1661	p.L554fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991				268	0	0	90	29	24.3697
UBAC2	0	genome.wustl.edu	37	13	99966382	99966382	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	13	99966382	99966382	T	-	DEL	UBAC2	ENST00000376440	human	ensembl	74_37	+1	known	frame_shift_del	c.316	p.Y107fs	1.000	NULL	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAC2	HGNC	ENSG00000134882				227	0	0	111	14	11.2
MIR494	0	genome.wustl.edu	37	14	101496040	101496040	+	RNA	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	101496040	101496040	T	-	DEL	MIR494	ENST00000349529	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	MIR494	HGNC	ENSG00000194717				67	0	0	28	11	28.2051
PPP1R13B	0	genome.wustl.edu	37	14	104216136	104216136	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	104216136	104216136	T	-	DEL	PPP1R13B	ENST00000202556	human	ensembl	74_37	-1	known	frame_shift_del	c.964	p.I322fs	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808				134	0	0	40	18	31.0345
AHNAK2	0	genome.wustl.edu	37	14	105419812	105419812	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	105419812	105419812	T	-	DEL	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.K659fs	0.001	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				431	0	0	199	29	12.7193
ECRP	0	genome.wustl.edu	37	14	21387987	21387987	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	21387987	21387987	A	-	DEL	ECRP	ENST00000258817	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	RP11-84C10.2	Clone_based_vega_gene	ENSG00000136315				60	0	0	23	4	14.8148
IPO4	0	genome.wustl.edu	37	14	24652234	24652234	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	24652234	24652234	G	-	DEL	IPO4	ENST00000354464	human	ensembl	74_37	-1	known	frame_shift_del	c.2369	p.P790fs	0.998	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	IPO4	HGNC	ENSG00000196497				129	0	0	57	9	13.6364
NFATC4	0	genome.wustl.edu	37	14	24838800	24838800	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	24838800	24838800	C	-	DEL	NFATC4	ENST00000413692	human	ensembl	74_37	+1	known	frame_shift_del	c.385	p.P130fs	1.000	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968				278	0	0	116	25	17.7305
ARHGAP5	0	genome.wustl.edu	37	14	32562345	32562346	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	32562345	32562346	-	A	INS	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	frame_shift_ins	c.2470_2471	p.R826fs	1.000:1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				140	0	0	113	11	8.87097
MBIP	0	genome.wustl.edu	37	14	36770037	36770037	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	36770037	36770037	A	-	DEL	MBIP	ENST00000604154	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.241	-	-	-	no_errors	MBIP	HGNC	ENSG00000151332				37	0	0	12	3	20
CNIH1	0	genome.wustl.edu	37	14	54896992	54896992	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	54896992	54896992	A	-	DEL	CNIH1	ENST00000216416	human	ensembl	74_37	-1	known	frame_shift_del	c.394	p.Y132fs	1.000	pfam_Cornichon	pfam_Cornichon	-	no_errors	CNIH1	HGNC	ENSG00000100528				69	0	0	35	20	36.3636
YLPM1	0	genome.wustl.edu	37	14	75265533	75265533	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	75265533	75265533	A	-	DEL	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	frame_shift_del	c.3533	p.M1180fs	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				131	0	0	50	5	9.09091
ENSG00000258407	0	genome.wustl.edu	37	14	88477180	88477180	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	88477180	88477180	A	-	DEL	ENSG00000258407	ENST00000554433	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-300J18.2	Clone_based_vega_gene	ENSG00000258407				81	0	0	44	8	15.3846
ATG2B	0	genome.wustl.edu	37	14	96788614	96788614	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	14	96788614	96788614	A	-	DEL	ATG2B	ENST00000488421	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG2B	HGNC	ENSG00000066739				97	0	0	48	17	26.1538
NIPA2	0	genome.wustl.edu	37	15	23021239	23021239	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	23021239	23021239	T	-	DEL	NIPA2	ENST00000337451	human	ensembl	74_37	-1	known	frame_shift_del	c.98	p.K33fs	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPA2	HGNC	ENSG00000140157				215	0	0	77	23	23
HERC2	0	genome.wustl.edu	37	15	28386693	28386693	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	28386693	28386693	C	-	DEL	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	frame_shift_del	c.11900	p.G3967fs	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				189	1	0.526316	83	19	18.6275
SLC30A4	0	genome.wustl.edu	37	15	45803424	45803426	+	In_Frame_Del	DEL	GTC	GTC	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	GTC	GTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	45803424	45803426	GTC	-	DEL	SLC30A4	ENST00000261867	human	ensembl	74_37	-1	known	in_frame_del	c.450_448	p.D150in_frame_del	0.998:1.000:1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A4	HGNC	ENSG00000104154				518	0	0	203	28	12.1212
PRTG	0	genome.wustl.edu	37	15	55912892	55912892	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	55912892	55912892	A	-	DEL	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	frame_shift_del	c.3167	p.F1056fs	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450				103	0	0	40	9	18.3673
VPS13C	0	genome.wustl.edu	37	15	62208112	62208112	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	62208112	62208112	T	-	DEL	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	frame_shift_del	c.8165	p.N2722fs	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				110	0	0	60	9	13.0435
TRIP4	0	genome.wustl.edu	37	15	64686305	64686305	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	64686305	64686305	A	-	DEL	TRIP4	ENST00000261884	human	ensembl	74_37	+1	known	frame_shift_del	c.262	p.D90fs	0.948	NULL	pfam_ASCH_domain,pfam_Znf_C2HC5,superfamily_PUA-like_domain	-	no_errors	TRIP4	HGNC	ENSG00000103671				59	0	0	39	8	17.0213
ZNF609	0	genome.wustl.edu	37	15	64967247	64967247	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	64967247	64967247	A	-	DEL	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	frame_shift_del	c.2194	p.K734fs	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				361	1	0.276243	90	44	32.8358
NEIL1	0	genome.wustl.edu	37	15	75644674	75644674	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	75644674	75644674	C	-	DEL	NEIL1	ENST00000355059	human	ensembl	74_37	+1	known	frame_shift_del	c.564	p.F191fs	1.000	pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_Ribosomal_S13-like_H2TH	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398				209	0	0	64	19	22.8916
KIAA1024	0	genome.wustl.edu	37	15	79750586	79750586	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	79750586	79750586	A	-	DEL	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	frame_shift_del	c.2097	p.S702fs	0.527	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				261	1	0.381679	102	24	19.0476
IL16	0	genome.wustl.edu	37	15	81598461	81598462	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	81598461	81598462	CT	-	DEL	IL16	ENST00000302987	human	ensembl	74_37	+1	known	frame_shift_del	c.3633_3634	p.S1212fs	0.001:0.004	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_IL-16	-	no_errors	IL16	HGNC	ENSG00000172349				233	0	0	94	18	16.0714
TICRR	0	genome.wustl.edu	37	15	90168411	90168411	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	90168411	90168411	C	-	DEL	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	frame_shift_del	c.4870	p.C1626fs	0.955	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534				100	0	0	33	6	15.3846
KIF7	0	genome.wustl.edu	37	15	90171812	90171812	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	15	90171812	90171812	G	-	DEL	KIF7	ENST00000394412	human	ensembl	74_37	-1	known	frame_shift_del	c.3870	p.E1291fs	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813				128	0	0	51	7	12.069
TVP23A	0	genome.wustl.edu	37	16	10867202	10867203	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	10867202	10867203	-	A	INS	TVP23A	ENST00000299866	human	ensembl	74_37	-1	known	frame_shift_ins	c.421_420	p.S140fs	1.000:1.000	pfam_DUF846_euk	pfam_DUF846_euk	-	no_errors	TVP23A	HGNC	ENSG00000166676				155	0	0	55	9	14.0625
ENSG00000257769	0	genome.wustl.edu	37	16	15702439	15702439	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	15702439	15702439	A	-	DEL	ENSG00000257769	ENST00000549756	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTB-193M12.1	Clone_based_vega_gene	ENSG00000257769				17	0	0	12	3	20
ARHGAP17	0	genome.wustl.edu	37	16	24942188	24942188	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	24942188	24942188	G	-	DEL	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	frame_shift_del	c.2432	p.P811fs	1.000	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				321	0	0	166	37	18.2266
ZNF48	0	genome.wustl.edu	37	16	30409299	30409299	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	30409299	30409299	G	-	DEL	ZNF48	ENST00000320159	human	ensembl	74_37	+1	known	frame_shift_del	c.728	p.E245fs	0.150	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035				131	0	0	57	11	16.1765
FBRS	0	genome.wustl.edu	37	16	30680911	30680911	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	30680911	30680911	C	-	DEL	FBRS	ENST00000356166	human	ensembl	74_37	+1	known	frame_shift_del	c.2888	p.R965fs	1.000	NULL	prints_AUTS2	-	no_errors	FBRS	HGNC	ENSG00000156860				196	0	0	84	14	14.2857
ZNF668	0	genome.wustl.edu	37	16	31072732	31072732	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	31072732	31072732	C	-	DEL	ZNF668	ENST00000426488	human	ensembl	74_37	-1	known	frame_shift_del	c.1586	p.G529fs	0.175	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394				162	0	0	70	20	22.2222
CREBBP	0	genome.wustl.edu	37	16	3824615	3824616	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	3824615	3824616	-	G	INS	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	frame_shift_ins	c.2238_2237	p.M747fs	0.289:1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				147	0	0	62	10	13.8889
CIAPIN1	0	genome.wustl.edu	37	16	57473215	57473217	+	In_Frame_Del	DEL	AAT	AAT	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AAT	AAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	57473215	57473217	AAT	-	DEL	CIAPIN1	ENST00000394391	human	ensembl	74_37	-1	known	in_frame_del	c.189_187	p.I63in_frame_del	0.973:0.980:0.807	NULL	pfam_Anamorsin	-	no_errors	CIAPIN1	HGNC	ENSG00000005194				429	0	0	144	23	13.7725
CTCF	0	genome.wustl.edu	37	16	67645338	67645339	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	67645338	67645339	-	A	INS	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	frame_shift_ins	c.603_604	p.T203fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				134	0	0	56	10	15.1515
RANBP10	0	genome.wustl.edu	37	16	67762448	67762448	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	67762448	67762448	G	-	DEL	RANBP10	ENST00000411657	human	ensembl	74_37	-1	known	frame_shift_del	c.1058	p.P353fs	0.000	NULL	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP10	HGNC	ENSG00000141084				111	0	0	30	5	14.2857
CYB5B	0	genome.wustl.edu	37	16	69493004	69493004	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	69493004	69493004	A	-	DEL	CYB5B	ENST00000307892	human	ensembl	74_37	+1	known	frame_shift_del	c.342	p.N116fs	0.076	superfamily_Cyt_B5-like_heme/steroid-bd	pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_Aquaporin-like,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	CYB5B	HGNC	ENSG00000103018				138	0	0	72	4	5.26316
METRN	0	genome.wustl.edu	37	16	767217	767218	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	767217	767218	-	C	INS	METRN	ENST00000568223	human	ensembl	74_37	+1	known	frame_shift_ins	c.712_713	p.L240fs	0.990:0.998	NULL	NULL	-	no_errors	METRN	HGNC	ENSG00000103260				25	0	0	10	3	23.0769
MSLN	0	genome.wustl.edu	37	16	814677	814677	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	814677	814677	C	-	DEL	MSLN	ENST00000382862	human	ensembl	74_37	+1	known	frame_shift_del	c.331	p.E113fs	0.000	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLN	HGNC	ENSG00000102854				426	0	0	148	18	10.8434
MTHFSD	0	genome.wustl.edu	37	16	86582174	86582174	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	86582174	86582174	T	-	DEL	MTHFSD	ENST00000360900	human	ensembl	74_37	-1	known	frame_shift_del	c.247	p.T83fs	1.000	pfam_FTHF_cligase	pfam_FTHF_cligase,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MTHFSD	HGNC	ENSG00000103248				109	0	0	40	9	18.3673
TCF25	0	genome.wustl.edu	37	16	89960161	89960161	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	16	89960161	89960161	A	-	DEL	TCF25	ENST00000263346	human	ensembl	74_37	+1	known	frame_shift_del	c.723	p.G244fs	0.000	NULL	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002				78	0	0	15	2	11.7647
SPECC1	0	genome.wustl.edu	37	17	20217329	20217330	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	20217329	20217330	AG	-	DEL	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	frame_shift_del	c.3158_3159	p.S1054fs	1.000:1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				82	0	0	21	4	16
EVI2B	0	genome.wustl.edu	37	17	29632035	29632035	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	29632035	29632035	T	-	DEL	EVI2B	ENST00000544462	human	ensembl	74_37	-1	known	frame_shift_del	c.638	p.N213fs	0.000	NULL	NULL	-	no_errors	EVI2B	HGNC	ENSG00000185862				237	0	0	101	27	21.0938
TMEM132E	0	genome.wustl.edu	37	17	32957032	32957033	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	32957032	32957033	AG	-	DEL	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	frame_shift_del	c.1074_1075	p.E359fs	1.000:1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				84	0	0	30	3	9.09091
GAS2L2	0	genome.wustl.edu	37	17	34072083	34072083	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	34072083	34072083	G	-	DEL	GAS2L2	ENST00000254466	human	ensembl	74_37	-1	known	frame_shift_del	c.2433	p.K812fs	0.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139				212	0	0	78	15	16.129
CDK12	0	genome.wustl.edu	37	17	37687472	37687472	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	37687472	37687472	G	-	DEL	CDK12	ENST00000447079	human	ensembl	74_37	+1	known	frame_shift_del	c.4376	p.G1461fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK12	HGNC	ENSG00000167258				196	1	0.507614	53	11	17.1875
KCNH4	0	genome.wustl.edu	37	17	40328258	40328259	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	40328258	40328259	-	C	INS	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	frame_shift_ins	c.643_642	p.S214fs	1.000:0.999	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558				383	0	0	113	20	15.0376
LSM12	0	genome.wustl.edu	37	17	42141192	42141192	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	42141192	42141192	G	-	DEL	LSM12	ENST00000293406	human	ensembl	74_37	-1	known	frame_shift_del	c.235	p.L79fs	1.000	pfam_Anticodon-binding_dom	pfam_Anticodon-binding_dom	-	no_errors	LSM12	HGNC	ENSG00000161654				94	0	0	32	8	20
HOXB7	0	genome.wustl.edu	37	17	46688090	46688090	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	46688090	46688090	C	-	DEL	HOXB7	ENST00000239165	human	ensembl	74_37	-1	known	frame_shift_del	c.191	p.G64fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB7	HGNC	ENSG00000260027				23	0	0	15	8	34.7826
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				153	0	0	62	8	11.4286
CAMTA2	0	genome.wustl.edu	37	17	4875738	4875738	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	4875738	4875738	G	-	DEL	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	frame_shift_del	c.2666	p.P889fs	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				60	0	0	17	10	37.037
DGKE	0	genome.wustl.edu	37	17	54921519	54921519	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	54921519	54921519	A	-	DEL	DGKE	ENST00000284061	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.T204fs	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933				43	0	0	22	7	24.1379
BZRAP1-AS1	0	genome.wustl.edu	37	17	56429378	56429378	+	RNA	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	56429378	56429378	C	-	DEL	BZRAP1-AS1	ENST00000578025	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.323	-	-	-	no_errors	BZRAP1-AS1	HGNC	ENSG00000265148				56	0	0	18	4	18.1818
RNF43	0	genome.wustl.edu	37	17	56435590	56435591	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	56435590	56435591	-	C	INS	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_ins	c.1547_1546	p.D516fs	0.040:0.126	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				243	0	0	90	23	20.354
PSMD12	0	genome.wustl.edu	37	17	65353654	65353655	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	65353654	65353655	AG	-	DEL	PSMD12	ENST00000356126	human	ensembl	74_37	-1	known	frame_shift_del	c.149_148	p.L50fs	0.998:0.904	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	PSMD12	HGNC	ENSG00000197170				258	0	0	111	17	13.2812
SOX9	0	genome.wustl.edu	37	17	70119910	70119910	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	70119910	70119910	G	-	DEL	SOX9	ENST00000245479	human	ensembl	74_37	+1	known	frame_shift_del	c.912	p.V306fs	0.153	NULL	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX9	HGNC	ENSG00000125398				102	0	0	27	4	12.9032
DVL2	0	genome.wustl.edu	37	17	7129594	7129594	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	7129594	7129594	C	-	DEL	DVL2	ENST00000005340	human	ensembl	74_37	-1	known	frame_shift_del	c.1801	p.A601fs	0.887	pfam_Dishevelled_C-dom	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_2,prints_Dishevelled_fam	-	no_errors	DVL2	HGNC	ENSG00000004975				155	1	0.641026	58	8	12.1212
TMEM104	0	genome.wustl.edu	37	17	72791152	72791152	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	72791152	72791152	G	-	DEL	TMEM104	ENST00000335464	human	ensembl	74_37	+1	known	frame_shift_del	c.429	p.V145fs	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066				128	0	0	51	7	12.069
CASKIN2	0	genome.wustl.edu	37	17	73498973	73498973	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	73498973	73498973	G	-	DEL	CASKIN2	ENST00000321617	human	ensembl	74_37	-1	known	frame_shift_del	c.2182	p.Q728fs	0.992	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN2	HGNC	ENSG00000177303				68	0	0	48	10	17.2414
EVPL	0	genome.wustl.edu	37	17	74004912	74004914	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	74004912	74004914	CTC	-	DEL	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	in_frame_del	c.4374_4372	p.E1458in_frame_del	1.000:1.000:1.000	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				324	0	0	103	12	10.4348
TP53	0	genome.wustl.edu	37	17	7577036	7577036	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	7577036	7577036	G	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.902	p.P301fs	0.137	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				187	0	0	67	7	9.45946
ENTHD2	0	genome.wustl.edu	37	17	79202956	79202956	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	79202956	79202956	T	-	DEL	ENTHD2	ENST00000300714	human	ensembl	74_37	-1	known	frame_shift_del	c.1350	p.G452fs	0.000	NULL	pfam_Epsin_dom_N,superfamily_ENTH_VHS	-	no_errors	ENTHD2	HGNC	ENSG00000167302				58	0	0	21	3	12.5
CCDC57	0	genome.wustl.edu	37	17	80141780	80141781	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	80141780	80141781	-	T	INS	CCDC57	ENST00000389641	human	ensembl	74_37	-1	known	frame_shift_ins	c.1081_1080	p.S360fs	0.001:0.000	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155				70	0	0	14	3	17.6471
ARHGEF15	0	genome.wustl.edu	37	17	8224297	8224298	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	17	8224297	8224298	-	C	INS	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	frame_shift_ins	c.2512_2513	p.P841fs	0.000:0.001	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				196	0	0	64	9	12.3288
SMCHD1	0	genome.wustl.edu	37	18	2706440	2706440	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	2706440	2706440	A	-	DEL	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	frame_shift_del	c.2035	p.K680fs	0.880	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596				23	0	0	4	3	42.8571
LMAN1	0	genome.wustl.edu	37	18	57013194	57013194	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	18	57013194	57013194	T	-	DEL	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	frame_shift_del	c.912	p.E305fs	0.898	superfamily_HMG_box_dom	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695				194	0	0	64	18	21.9512
MBD3	0	genome.wustl.edu	37	19	1578372	1578374	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	1578372	1578374	CTC	-	DEL	MBD3	ENST00000156825	human	ensembl	74_37	-1	known	in_frame_del	c.843_841	p.E281in_frame_del	0.902:0.992:1.000	superfamily_ARM-type_fold	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655				73	0	0	16	2	11.1111
MYO9B	0	genome.wustl.edu	37	19	17313664	17313666	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	17313664	17313666	AGA	-	DEL	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	in_frame_del	c.4850_4852	p.K1620in_frame_del	1.000:1.000:1.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				33	0	0	3	2	40
COMP	0	genome.wustl.edu	37	19	18899035	18899035	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	18899035	18899035	C	-	DEL	COMP	ENST00000222271	human	ensembl	74_37	-1	known	frame_shift_del	c.961	p.V321fs	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd_dom,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664				54	0	0	19	4	17.3913
ZNF43	0	genome.wustl.edu	37	19	21992087	21992087	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	21992087	21992087	T	-	DEL	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	frame_shift_del	c.752	p.N251fs	0.932	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				91	0	0	40	7	14.8936
KMT2B	0	genome.wustl.edu	37	19	36210763	36210764	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	36210763	36210764	-	C	INS	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_ins	c.514_515	p.K176fs	0.976:0.976	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				179	0	0	111	15	11.9048
KMT2B	0	genome.wustl.edu	37	19	36211183	36211183	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	36211183	36211183	A	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_del	c.934	p.V314fs	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				51	0	0	11	3	21.4286
KMT2B	0	genome.wustl.edu	37	19	36229305	36229305	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	36229305	36229305	C	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_del	c.7995	p.H2665fs	0.832	pirsf_MeTrfase_trithorax,pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				63	0	0	16	7	30.4348
ZNF420	0	genome.wustl.edu	37	19	37618888	37618888	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	37618888	37618888	A	-	DEL	ZNF420	ENST00000337995	human	ensembl	74_37	+1	known	frame_shift_del	c.995	p.K333fs	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF420	HGNC	ENSG00000197050				177	0	0	77	15	16.3043
RTN2	0	genome.wustl.edu	37	19	45996513	45996513	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	45996513	45996513	G	-	DEL	RTN2	ENST00000245923	human	ensembl	74_37	-1	known	frame_shift_del	c.938	p.P313fs	0.005	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744				309	1	0.322581	93	16	14.6789
GYS1	0	genome.wustl.edu	37	19	49477974	49477974	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	49477974	49477974	G	-	DEL	GYS1	ENST00000323798	human	ensembl	74_37	-1	known	frame_shift_del	c.1325	p.P442fs	1.000	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812				162	1	0.613497	36	7	16.2791
ZNF702P	0	genome.wustl.edu	37	19	53473566	53473566	+	RNA	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	53473566	53473566	T	-	DEL	ZNF702P	ENST00000270443	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	ZNF702P	HGNC	ENSG00000242779				138	0	0	48	9	15.7895
DENND1C	0	genome.wustl.edu	37	19	6477251	6477251	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	6477251	6477251	G	-	DEL	DENND1C	ENST00000381480	human	ensembl	74_37	-1	known	frame_shift_del	c.491	p.P164fs	0.983	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744				72	0	0	29	6	17.1429
FBN3	0	genome.wustl.edu	37	19	8193949	8193949	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	8193949	8193949	G	-	DEL	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	frame_shift_del	c.2259	p.G754fs	0.646	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				161	0	0	43	13	23.2143
OR7E24	0	genome.wustl.edu	37	19	9361741	9361741	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	19	9361741	9361741	T	-	DEL	OR7E24	ENST00000456448	human	ensembl	74_37	+1	known	frame_shift_del	c.22	p.F11fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521				17	0	0	13	3	18.75
AFF3	0	genome.wustl.edu	37	2	100210562	100210563	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	100210562	100210563	TC	-	DEL	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	frame_shift_del	c.1636_1635	p.K546fs	0.581:0.002	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				306	0	0	107	19	15.0794
TMEM37	0	genome.wustl.edu	37	2	120195033	120195033	+	RNA	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	120195033	120195033	C	-	DEL	TMEM37	ENST00000465296	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TMEM37	HGNC	ENSG00000171227				234	0	0	99	19	16.1017
RIF1	0	genome.wustl.edu	37	2	152320541	152320541	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	152320541	152320541	A	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.4507	p.K1505fs	0.001	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				185	0	0	67	13	16.25
NEB	0	genome.wustl.edu	37	2	152522788	152522788	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	152522788	152522788	T	-	DEL	NEB	ENST00000397345	human	ensembl	74_37	-1	known	frame_shift_del	c.4847	p.K1616fs	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				319	0	0	121	31	20.3947
TTN	0	genome.wustl.edu	37	2	179535859	179535860	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	179535859	179535860	-	T	INS	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_ins	c.31363_31362	p.P10454fs	1.000:0.997	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				57	0	0	24	5	17.2414
DNAH7	0	genome.wustl.edu	37	2	196866535	196866535	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	196866535	196866535	T	-	DEL	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_del	c.1037	p.K346fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				90	0	0	27	9	25
PLCL1	0	genome.wustl.edu	37	2	198949403	198949404	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	198949403	198949404	-	T	INS	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	frame_shift_ins	c.1162_1163	p.D390fs	0.985:1.000	pfam_PLipase_C_EF-hand-like	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				225	0	0	92	13	12.381
BMPR2	0	genome.wustl.edu	37	2	203420130	203420130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	203420130	203420130	A	-	DEL	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	frame_shift_del	c.1742	p.N583fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				131	1	0.757576	65	9	12.1622
NRP2	0	genome.wustl.edu	37	2	206659845	206659845	+	RNA	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	206659845	206659845	T	-	DEL	NRP2	ENST00000467850	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.465	-	-	-	no_errors	NRP2	HGNC	ENSG00000118257				17	0	0	10	4	28.5714
ZDBF2	0	genome.wustl.edu	37	2	207174869	207174869	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	207174869	207174869	A	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.5617	p.K1875fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				62	0	0	28	4	12.5
COL6A3	0	genome.wustl.edu	37	2	238277573	238277573	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	238277573	238277573	C	-	DEL	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	frame_shift_del	c.4533	p.S1512fs	0.001	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				126	0	0	68	8	10.5263
CAPN10	0	genome.wustl.edu	37	2	241536127	241536127	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	241536127	241536127	C	-	DEL	CAPN10	ENST00000391984	human	ensembl	74_37	+1	known	frame_shift_del	c.1511	p.A507fs	0.000	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN10	HGNC	ENSG00000142330				109	0	0	38	7	15.5556
GMCL1	0	genome.wustl.edu	37	2	70096843	70096843	+	RNA	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	70096843	70096843	T	-	DEL	GMCL1	ENST00000495047	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.598	-	-	-	no_errors	GMCL1	HGNC	ENSG00000087338				133	0	0	45	8	15.0943
C2orf42	0	genome.wustl.edu	37	2	70392682	70392682	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	70392682	70392682	T	-	DEL	C2orf42	ENST00000264434	human	ensembl	74_37	-1	known	frame_shift_del	c.1230	p.K410fs	1.000	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998				155	0	0	41	10	19.6078
ATP6V1B1	0	genome.wustl.edu	37	2	71191573	71191573	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	71191573	71191573	C	-	DEL	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	frame_shift_del	c.1149	p.I386fs	0.999	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				159	0	0	57	14	19.7183
LOXL3	0	genome.wustl.edu	37	2	74763924	74763924	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	74763924	74763924	C	-	DEL	LOXL3	ENST00000264094	human	ensembl	74_37	-1	known	frame_shift_del	c.824	p.G275fs	0.001	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL3	HGNC	ENSG00000115318				217	1	0.458716	88	16	15.3846
GCFC2	0	genome.wustl.edu	37	2	75916297	75916298	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	75916297	75916298	-	A	INS	GCFC2	ENST00000321027	human	ensembl	74_37	-1	known	frame_shift_ins	c.1394_1393	p.C465fs	0.996:0.997	NULL	pfam_GCFC_dom	-	no_errors	GCFC2	HGNC	ENSG00000005436				196	0	0	77	8	9.41176
PTCD3	0	genome.wustl.edu	37	2	86344184	86344184	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	86344184	86344184	T	-	DEL	PTCD3	ENST00000254630	human	ensembl	74_37	+1	known	frame_shift_del	c.316	p.L107fs	0.992	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300				70	0	0	40	7	14.8936
LIPT1	0	genome.wustl.edu	37	2	99778781	99778781	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	2	99778781	99778781	A	-	DEL	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	frame_shift_del	c.361	p.K123fs	0.994	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182				110	1	0.900901	41	10	19.6078
TTI1	0	genome.wustl.edu	37	20	36627613	36627613	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	36627613	36627613	G	-	DEL	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	frame_shift_del	c.2770	p.L924fs	1.000	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				119	0	0	41	9	18
TOP1	0	genome.wustl.edu	37	20	39721180	39721180	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	39721180	39721180	C	-	DEL	TOP1	ENST00000361337	human	ensembl	74_37	+1	known	frame_shift_del	c.683	p.P229fs	1.000	pfam_TopoI_DNA-bd_euk,superfamily_TopoI_DNA-bd_euk	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1	HGNC	ENSG00000198900				195	0	0	74	12	13.9535
ZNFX1	0	genome.wustl.edu	37	20	47858380	47858380	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	20	47858380	47858380	A	-	DEL	ZNFX1	ENST00000371754	human	ensembl	74_37	-1	known	frame_shift_del	c.3393	p.F1131fs	0.000	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	ZNFX1	HGNC	ENSG00000124201				48	0	0	17	6	26.087
RWDD2B	0	genome.wustl.edu	37	21	30378685	30378685	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	30378685	30378685	A	-	DEL	RWDD2B	ENST00000286777	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RWDD2B	HGNC	ENSG00000156253				20	0	0	24	9	27.2727
PDE9A	0	genome.wustl.edu	37	21	44195538	44195541	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	44195538	44195541	AAAA	-	DEL	PDE9A	ENST00000460989	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors	PDE9A	HGNC	ENSG00000160191				15	0	0	9	4	30.7692
TRAPPC10	0	genome.wustl.edu	37	21	45507746	45507747	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	45507746	45507747	-	C	INS	TRAPPC10	ENST00000291574	human	ensembl	74_37	+1	known	frame_shift_ins	c.2706_2707	p.H903fs	0.940:0.165	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218				84	0	0	27	6	18.1818
TRAPPC10	0	genome.wustl.edu	37	21	45514004	45514004	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	45514004	45514004	C	-	DEL	TRAPPC10	ENST00000291574	human	ensembl	74_37	+1	known	frame_shift_del	c.3058	p.P1021fs	1.000	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218				249	0	0	104	22	17.4603
MCM3AP-AS1	0	genome.wustl.edu	37	21	47662900	47662902	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	21	47662900	47662902	AAA	-	DEL	MCM3AP-AS1	ENST00000421927	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	MCM3AP-AS1	HGNC	ENSG00000215424				70	0	0	34	6	15
COMT	0	genome.wustl.edu	37	22	19951647	19951649	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	19951647	19951649	CCT	-	DEL	COMT	ENST00000207636	human	ensembl	74_37	+1	known	in_frame_del	c.498_500	p.L168in_frame_del	0.000:0.000:0.000	NULL	pfam_O-MeTrfase_3	-	no_errors	COMT	HGNC	ENSG00000093010				152	0	0	63	10	13.6986
TFIP11	0	genome.wustl.edu	37	22	26890229	26890231	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	26890229	26890231	CTC	-	DEL	TFIP11	ENST00000405938	human	ensembl	74_37	-1	known	in_frame_del	c.2034_2032	p.E678in_frame_del	1.000:1.000:1.000	NULL	pfam_GCFC_dom,pfam_TIP_N,pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	TFIP11	HGNC	ENSG00000100109				154	0	0	51	10	16.3934
TPST2	0	genome.wustl.edu	37	22	26932299	26932299	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	26932299	26932299	G	-	DEL	TPST2	ENST00000338754	human	ensembl	74_37	-1	known	frame_shift_del	c.996	p.N333fs	0.999	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	TPST2	HGNC	ENSG00000128294				115	0	0	35	4	10.2564
CHEK2	0	genome.wustl.edu	37	22	29091778	29091778	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	29091778	29091778	A	-	DEL	CHEK2	ENST00000382580	human	ensembl	74_37	-1	known	frame_shift_del	c.1308	p.E437fs	0.994	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765				167	0	0	46	10	17.8571
DDX17	0	genome.wustl.edu	37	22	38895455	38895455	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	38895455	38895455	C	-	DEL	DDX17	ENST00000396821	human	ensembl	74_37	-1	known	frame_shift_del	c.488	p.G163fs	0.996	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201				242	0	0	89	12	11.8812
PNPLA3	0	genome.wustl.edu	37	22	44328951	44328952	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	44328951	44328952	-	C	INS	PNPLA3	ENST00000216180	human	ensembl	74_37	+1	known	frame_shift_ins	c.680_681	p.D230fs	0.158:0.164	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA3	HGNC	ENSG00000100344				196	0	0	84	10	10.6383
ALG12	0	genome.wustl.edu	37	22	50297991	50297991	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	22	50297991	50297991	G	-	DEL	ALG12	ENST00000330817	human	ensembl	74_37	-1	known	frame_shift_del	c.1156	p.Q386fs	0.002	NULL	pfam_GPI_mannosylTrfase	-	no_errors	ALG12	HGNC	ENSG00000182858				86	0	0	31	7	18.4211
MAATS1	0	genome.wustl.edu	37	3	119458102	119458104	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	119458102	119458104	GAA	-	DEL	MAATS1	ENST00000273390	human	ensembl	74_37	+1	known	in_frame_del	c.1462_1464	p.E491in_frame_del	1.000:1.000:1.000	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	MAATS1	HGNC	ENSG00000183833				414	0	0	166	9	5.14286
CCDC37	0	genome.wustl.edu	37	3	126142183	126142183	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	126142183	126142183	C	-	DEL	CCDC37	ENST00000393425	human	ensembl	74_37	+1	known	frame_shift_del	c.1101	p.T370fs	0.000	NULL	superfamily_SuperAg_toxin_C	-	no_errors	CCDC37	HGNC	ENSG00000163885				57	0	0	19	4	17.3913
UROC1	0	genome.wustl.edu	37	3	126229603	126229603	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	126229603	126229603	G	-	DEL	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	frame_shift_del	c.161	p.P54fs	0.334	NULL	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				113	0	0	44	4	8.33333
COLQ	0	genome.wustl.edu	37	3	15516433	15516433	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	15516433	15516433	T	-	DEL	COLQ	ENST00000383788	human	ensembl	74_37	-1	known	frame_shift_del	c.554	p.K185fs	1.000	NULL	pfam_Collagen,tigrfam_Myxo_disulph_rpt	-	no_errors	COLQ	HGNC	ENSG00000206561				349	0	0	129	17	11.6438
ETV5	0	genome.wustl.edu	37	3	185769835	185769835	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	185769835	185769835	T	-	DEL	ETV5	ENST00000537818	human	ensembl	74_37	-1	known	frame_shift_del	c.1421	p.K474fs	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV5	HGNC	ENSG00000244405				243	1	0.409836	96	15	13.5135
TFRC	0	genome.wustl.edu	37	3	195796404	195796404	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	195796404	195796404	T	-	DEL	TFRC	ENST00000360110	human	ensembl	74_37	-1	known	frame_shift_del	c.723	p.D242fs	0.116	pfam_Protease-assoc_domain	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFRC	HGNC	ENSG00000072274				62	0	0	23	3	11.5385
SGOL1	0	genome.wustl.edu	37	3	20212755	20212756	+	RNA	DEL	AA	AA	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	20212755	20212756	AA	-	DEL	SGOL1	ENST00000460637	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SGOL1	HGNC	ENSG00000129810				48	0	0	22	12	35.2941
TRANK1	0	genome.wustl.edu	37	3	36893221	36893222	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	36893221	36893222	-	A	INS	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	frame_shift_ins	c.4744_4743	p.T1581fs	1.000:0.995	superfamily_P-loop_NTPase	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				59	0	0	30	5	14.2857
SCN11A	0	genome.wustl.edu	37	3	38949441	38949441	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	38949441	38949441	T	-	DEL	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	frame_shift_del	c.1472	p.K491fs	0.352	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				145	0	0	55	11	16.6667
SCAP	0	genome.wustl.edu	37	3	47462542	47462543	+	RNA	INS	-	-	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	47462542	47462543	-	G	INS	SCAP	ENST00000465628	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SCAP	HGNC	ENSG00000114650				91	0	0	34	5	12.8205
COL7A1	0	genome.wustl.edu	37	3	48621170	48621170	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	48621170	48621170	G	-	DEL	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	frame_shift_del	c.4322	p.P1441fs	0.295	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				154	0	0	61	14	18.6667
ATXN7	0	genome.wustl.edu	37	3	63981492	63981492	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	63981492	63981492	C	-	DEL	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	frame_shift_del	c.1994	p.M667fs	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				241	0	0	81	18	18.1818
ROBO2	0	genome.wustl.edu	37	3	77657038	77657038	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	77657038	77657038	C	-	DEL	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	frame_shift_del	c.3226	p.P1078fs	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				85	0	0	41	6	12.766
IL17RE	0	genome.wustl.edu	37	3	9950934	9950934	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	3	9950934	9950934	A	-	DEL	IL17RE	ENST00000421412	human	ensembl	74_37	+1	known	frame_shift_del	c.868	p.K291fs	0.840	NULL	pfam_SEFIR	-	no_errors	IL17RE	HGNC	ENSG00000163701				76	0	0	29	4	12.1212
ALPK1	0	genome.wustl.edu	37	4	113356416	113356416	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	113356416	113356416	T	-	DEL	ALPK1	ENST00000177648	human	ensembl	74_37	+1	known	frame_shift_del	c.3147	p.W1051fs	0.473	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331				455	1	0.219298	171	30	14.9254
FAT4	0	genome.wustl.edu	37	4	126373367	126373367	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	126373367	126373367	T	-	DEL	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	frame_shift_del	c.11196	p.L3734fs	0.432	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				295	0	0	128	26	16.8831
PLK4	0	genome.wustl.edu	37	4	128814507	128814507	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	128814507	128814507	A	-	DEL	PLK4	ENST00000270861	human	ensembl	74_37	+1	known	frame_shift_del	c.2256	p.S754fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK4	HGNC	ENSG00000142731				122	0	0	73	18	19.7802
INPP4B	0	genome.wustl.edu	37	4	143007332	143007332	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	143007332	143007332	T	-	DEL	INPP4B	ENST00000509777	human	ensembl	74_37	-1	known	frame_shift_del	c.2452	p.R818fs	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4B	HGNC	ENSG00000109452				110	0	0	28	8	22.2222
SMARCA5	0	genome.wustl.edu	37	4	144442710	144442710	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	144442710	144442710	A	-	DEL	SMARCA5	ENST00000283131	human	ensembl	74_37	+1	known	frame_shift_del	c.381	p.D130fs	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA5	HGNC	ENSG00000153147				94	0	0	44	6	12
OTUD4	0	genome.wustl.edu	37	4	146058622	146058624	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	146058622	146058624	CTC	-	DEL	OTUD4	ENST00000447906	human	ensembl	74_37	-1	known	in_frame_del	c.3305_3303	p.R1102in_frame_del	0.973:0.982:0.998	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164				403	0	0	158	19	10.7345
EDNRA	0	genome.wustl.edu	37	4	148441069	148441069	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	148441069	148441069	T	-	DEL	EDNRA	ENST00000324300	human	ensembl	74_37	+1	known	frame_shift_del	c.487	p.L164fs	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_ETA_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn	-	no_errors	EDNRA	HGNC	ENSG00000151617				329	0	0	137	22	13.8365
PROM1	0	genome.wustl.edu	37	4	15995679	15995680	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	15995679	15995680	-	T	INS	PROM1	ENST00000447510	human	ensembl	74_37	-1	known	frame_shift_ins	c.1698_1697	p.N566fs	0.395:0.415	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062				180	1	0.552486	67	15	18.2927
DDX60L	0	genome.wustl.edu	37	4	169317264	169317264	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	169317264	169317264	T	-	DEL	DDX60L	ENST00000260184	human	ensembl	74_37	-1	known	frame_shift_del	c.3503	p.N1168fs	0.000	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381				19	0	0	10	3	23.0769
NEIL3	0	genome.wustl.edu	37	4	178283532	178283532	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	178283532	178283532	T	-	DEL	NEIL3	ENST00000264596	human	ensembl	74_37	+1	known	frame_shift_del	c.1725	p.F577fs	0.884	pfam_Znf_GRF	pfam_Znf_GRF,pfam_DNA_glyclase/AP_lyase_DNA-bd,pfam_Znf_RanBP2,superfamily_Ribosomal_S13-like_H2TH,superfamily_DNA_glycosylase/AP_lyase_cat,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_Znf_DNA_glyclase/AP_lyase,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL3	HGNC	ENSG00000109674				124	0	0	56	8	12.5
ENSG00000248694	0	genome.wustl.edu	37	4	183694819	183694819	+	RNA	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	183694819	183694819	T	-	DEL	ENSG00000248694	ENST00000513255	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-18D7.2	Clone_based_vega_gene	ENSG00000248694				214	0	0	83	14	14.433
KIAA0232	0	genome.wustl.edu	37	4	6843886	6843887	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	4	6843886	6843887	-	A	INS	KIAA0232	ENST00000307659	human	ensembl	74_37	+1	known	frame_shift_ins	c.324_325	p.Q110fs	1.000:1.000	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871				154	0	0	86	15	14.8515
CSNK1G3	0	genome.wustl.edu	37	5	122881495	122881495	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	122881495	122881495	A	-	DEL	CSNK1G3	ENST00000360683	human	ensembl	74_37	+1	known	frame_shift_del	c.138	p.I49fs	0.861	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Casein_kinase-1_gamma_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1G3	HGNC	ENSG00000151292				187	0	0	69	10	12.6582
CDC25C	0	genome.wustl.edu	37	5	137627689	137627690	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	137627689	137627690	-	T	INS	CDC25C	ENST00000323760	human	ensembl	74_37	-1	known	frame_shift_ins	c.732_731	p.Y245fs	0.194:0.395	pfam_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25C	HGNC	ENSG00000158402				196	0	0	81	15	15.625
WDR55	0	genome.wustl.edu	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	140049102	140049102	A	-	DEL	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	1.000	pirsf_WD_repeat_p55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314				62	0	0	20	6	23.0769
RBM27	0	genome.wustl.edu	37	5	145647320	145647320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	145647320	145647320	A	-	DEL	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	frame_shift_del	c.2440	p.K816fs	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				131	0	0	68	9	11.6883
BTNL3	0	genome.wustl.edu	37	5	180432664	180432665	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	180432664	180432665	-	CC	INS	BTNL3	ENST00000342868	human	ensembl	74_37	+1	known	frame_shift_ins	c.1193_1194	p.S401fs	0.003:0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTNL3	HGNC	ENSG00000168903				102	0	0	46	9	16.3636
SPEF2	0	genome.wustl.edu	37	5	35700715	35700715	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	35700715	35700715	A	-	DEL	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	frame_shift_del	c.2259	p.A756fs	0.002	superfamily_P-loop_NTPase	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				110	0	0	42	12	22.2222
WDR70	0	genome.wustl.edu	37	5	37701207	37701208	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	37701207	37701208	-	T	INS	WDR70	ENST00000265107	human	ensembl	74_37	+1	known	frame_shift_ins	c.1240_1241	p.S416fs	1.000:1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR70	HGNC	ENSG00000082068				166	0	0	100	13	11.5044
FASTKD3	0	genome.wustl.edu	37	5	7867769	7867769	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	7867769	7867769	T	-	DEL	FASTKD3	ENST00000264669	human	ensembl	74_37	-1	known	frame_shift_del	c.428	p.K143fs	0.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD3	HGNC	ENSG00000124279				110	0	0	67	10	12.987
LNPEP	0	genome.wustl.edu	37	5	96315249	96315249	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	5	96315249	96315249	A	-	DEL	LNPEP	ENST00000231368	human	ensembl	74_37	+1	known	frame_shift_del	c.427	p.N145fs	0.910	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LNPEP	HGNC	ENSG00000113441				181	0	0	78	9	10.3448
SLC16A10	0	genome.wustl.edu	37	6	111409136	111409136	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	111409136	111409136	C	-	DEL	SLC16A10	ENST00000368851	human	ensembl	74_37	+1	known	frame_shift_del	c.181	p.E63fs	0.214	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394				36	0	0	12	3	20
MED23	0	genome.wustl.edu	37	6	131948470	131948472	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	131948470	131948472	AAA	-	DEL	MED23	ENST00000489888	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.004:0.006	-	-	-	no_errors	MED23	HGNC	ENSG00000112282				58	0	0	22	7	24.1379
BCLAF1	0	genome.wustl.edu	37	6	136599252	136599252	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	136599252	136599252	T	-	DEL	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	frame_shift_del	c.767	p.N256fs	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				144	0	0	105	7	6.25
CITED2	0	genome.wustl.edu	37	6	139694831	139694831	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	139694831	139694831	G	-	DEL	CITED2	ENST00000367651	human	ensembl	74_37	-1	known	frame_shift_del	c.251	p.P84fs	0.771	pfam_CITED	pfam_CITED	-	no_errors	CITED2	HGNC	ENSG00000164442				42	0	0	18	4	18.1818
HIVEP2	0	genome.wustl.edu	37	6	143082658	143082659	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	143082658	143082659	-	T	INS	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	frame_shift_ins	c.5563_5562	p.C1854fs	1.000:1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				381	0	0	129	25	16.2338
SYNE1	0	genome.wustl.edu	37	6	152671800	152671800	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	152671800	152671800	T	-	DEL	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	frame_shift_del	c.11686	p.I3896fs	0.998	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				214	0	0	124	14	10.1449
ARID1B	0	genome.wustl.edu	37	6	157527817	157527817	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	157527817	157527817	C	-	DEL	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	frame_shift_del	c.5662	p.L1890fs	0.002	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				131	0	0	67	14	17.284
TULP4	0	genome.wustl.edu	37	6	158924562	158924563	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	158924562	158924563	-	C	INS	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	frame_shift_ins	c.3867_3868	p.L1290fs	1.000:1.000	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				217	0	0	81	15	15.625
QKI	0	genome.wustl.edu	37	6	163899920	163899920	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	163899920	163899920	A	-	DEL	QKI	ENST00000361752	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.K134fs	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				139	0	0	57	10	14.9254
BTN2A2	0	genome.wustl.edu	37	6	26390383	26390383	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	26390383	26390383	A	-	DEL	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	frame_shift_del	c.875	p.K294fs	0.000	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508				127	0	0	44	8	15.3846
OR2J1	0	genome.wustl.edu	37	6	29068729	29068729	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	29068729	29068729	A	-	DEL	OR2J1	ENST00000377171	human	ensembl	74_37	+1	known	frame_shift_del	c.10	p.N6fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2J1	HGNC	ENSG00000204702				71	0	0	38	7	15.5556
HLA-A	0	genome.wustl.edu	37	6	29911900	29911900	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	29911900	29911900	C	-	DEL	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	frame_shift_del	c.621	p.K210fs	0.000	pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				520	1	0.191939	218	24	9.91736
DHX16	0	genome.wustl.edu	37	6	30621048	30621048	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	30621048	30621048	T	-	DEL	DHX16	ENST00000376442	human	ensembl	74_37	-1	known	frame_shift_del	c.3097	p.I1033fs	0.987	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560				158	0	0	58	6	9.375
DDX39B	0	genome.wustl.edu	37	6	31504446	31504446	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	31504446	31504446	A	-	DEL	DDX39B	ENST00000417556	human	ensembl	74_37	-1	known	frame_shift_del	c.492	p.F164fs	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX39B	HGNC	ENSG00000198563				108	0	0	50	12	19.3548
TDRD6	0	genome.wustl.edu	37	6	46660415	46660415	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	46660415	46660415	A	-	DEL	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	frame_shift_del	c.4550	p.M1520fs	0.009	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				104	0	0	76	9	10.5882
SMAP1	0	genome.wustl.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	71508370	71508370	A	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.506	p.K172fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				15	0	0	4	3	42.8571
ZNF292	0	genome.wustl.edu	37	6	87970331	87970331	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	87970331	87970331	A	-	DEL	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	frame_shift_del	c.6984	p.M2330fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				73	0	0	41	5	10.8696
PNISR	0	genome.wustl.edu	37	6	99848583	99848584	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	6	99848583	99848584	-	T	INS	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	frame_shift_ins	c.2251_2250	p.H750fs	1.000:1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				219	0	0	130	16	10.9589
NYAP1	0	genome.wustl.edu	37	7	100085884	100085884	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	100085884	100085884	C	-	DEL	NYAP1	ENST00000423930	human	ensembl	74_37	+1	known	frame_shift_del	c.540	p.P182fs	1.000	NULL	NULL	-	no_errors	NYAP1	HGNC	ENSG00000166924				292	0	0	99	14	12.3894
WNT16	0	genome.wustl.edu	37	7	120971879	120971879	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	120971879	120971879	G	-	DEL	WNT16	ENST00000222462	human	ensembl	74_37	+1	known	frame_shift_del	c.494	p.G167fs	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745				140	0	0	57	13	18.5714
WASL	0	genome.wustl.edu	37	7	123332484	123332485	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	123332484	123332485	-	T	INS	WASL	ENST00000223023	human	ensembl	74_37	-1	known	frame_shift_ins	c.1264_1263	p.V421fs	1.000:1.000	pfam_WH2_dom,superfamily_WASP_C,smart_WH2_dom,pfscan_WH2_dom	pfam_WH1/EVH1,pfam_CRIB_dom,pfam_WH2_dom,superfamily_WASP_C,smart_WH1/EVH1,smart_CRIB_dom,smart_WH2_dom,pfscan_CRIB_dom,pfscan_WH1/EVH1,pfscan_WH2_dom	-	no_errors	WASL	HGNC	ENSG00000106299				121	0	0	60	13	17.8082
KIAA1549	0	genome.wustl.edu	37	7	138552754	138552754	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	138552754	138552754	G	-	DEL	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	frame_shift_del	c.4896	p.G1633fs	0.731	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				97	0	0	22	6	21.4286
ATG9B	0	genome.wustl.edu	37	7	150720307	150720307	+	RNA	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	150720307	150720307	G	-	DEL	ATG9B	ENST00000473698	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652				253	0	0	100	16	13.7931
INTS1	0	genome.wustl.edu	37	7	1527075	1527075	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	1527075	1527075	G	-	DEL	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	frame_shift_del	c.2956	p.R986fs	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				65	0	0	10	3	23.0769
TWISTNB	0	genome.wustl.edu	37	7	19738024	19738024	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	19738024	19738024	T	-	DEL	TWISTNB	ENST00000222567	human	ensembl	74_37	-1	known	frame_shift_del	c.932	p.K311fs	1.000	NULL	pfam_RNA_pol_Rpb7_N	-	no_errors	TWISTNB	HGNC	ENSG00000105849				239	0	0	84	20	19.2308
OSBPL3	0	genome.wustl.edu	37	7	24910452	24910453	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	24910452	24910453	TC	-	DEL	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	frame_shift_del	c.280_279	p.K94fs	1.000:0.999	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882				115	0	0	39	7	15.2174
SDK1	0	genome.wustl.edu	37	7	4201429	4201429	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	4201429	4201429	C	-	DEL	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	frame_shift_del	c.4741	p.P1582fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				330	0	0	96	12	11.1111
PKD1L1	0	genome.wustl.edu	37	7	47944773	47944773	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	47944773	47944773	T	-	DEL	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	frame_shift_del	c.1672	p.R558fs	0.224	superfamily_PKD_dom,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				134	0	0	68	14	17.0732
POM121	0	genome.wustl.edu	37	7	72409181	72409181	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	72409181	72409181	C	-	DEL	POM121	ENST00000434423	human	ensembl	74_37	+1	known	frame_shift_del	c.1328	p.R444fs	1.000	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313				456	0	0	132	23	14.8387
GTF2IRD2P1	0	genome.wustl.edu	37	7	72658286	72658286	+	RNA	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	72658286	72658286	G	-	DEL	GTF2IRD2P1	ENST00000425256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.384	-	-	-	no_errors	GTF2IRD2P1	HGNC	ENSG00000214544				155	0	0	67	11	14.1026
CROT	0	genome.wustl.edu	37	7	86978480	86978480	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	7	86978480	86978480	A	-	DEL	CROT	ENST00000331536	human	ensembl	74_37	+1	known	frame_shift_del	c.96	p.K34fs	0.795	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469				90	0	0	53	11	17.1875
OXR1	0	genome.wustl.edu	37	8	107715191	107715191	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	107715191	107715191	A	-	DEL	OXR1	ENST00000442977	human	ensembl	74_37	+1	known	frame_shift_del	c.736	p.N247fs	1.000	pfam_GRAM	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830				75	0	0	39	4	9.30233
KLHL38	0	genome.wustl.edu	37	8	124664881	124664881	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	124664881	124664881	C	-	DEL	KLHL38	ENST00000325995	human	ensembl	74_37	-1	known	frame_shift_del	c.286	p.E96fs	0.397	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946				83	0	0	38	8	17.3913
EPPK1	0	genome.wustl.edu	37	8	144940165	144940166	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	144940165	144940166	-	AG	INS	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	frame_shift_ins	c.7257_7256	p.Q2420fs	0.000:0.000	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				40	0	0	12	4	25
PLEC	0	genome.wustl.edu	37	8	144993009	144993010	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	144993009	144993010	GA	-	DEL	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	frame_shift_del	c.11391_11390	p.L3797fs	0.175:0.717	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				112	0	0	54	11	16.9231
MICU3	0	genome.wustl.edu	37	8	16944491	16944491	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	16944491	16944491	A	-	DEL	MICU3	ENST00000318063	human	ensembl	74_37	+1	known	frame_shift_del	c.796	p.N268fs	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU3	HGNC	ENSG00000155970				64	0	0	20	4	16.6667
CCAR2	0	genome.wustl.edu	37	8	22473324	22473324	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	22473324	22473324	C	-	DEL	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	frame_shift_del	c.1507	p.L505fs	0.809	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				202	2	0.980392	75	12	13.7931
ANK1	0	genome.wustl.edu	37	8	41522449	41522449	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	41522449	41522449	C	-	DEL	ANK1	ENST00000314214	human	ensembl	74_37	-1	known	frame_shift_del	c.93	p.S32fs	1.000	NULL	NULL	-	no_errors	ANK1	HGNC	ENSG00000029534				99	0	0	36	3	7.69231
CHD7	0	genome.wustl.edu	37	8	61693840	61693840	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	61693840	61693840	A	-	DEL	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	frame_shift_del	c.1947	p.D652fs	0.976	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				11	0	0	4	2	33.3333
ARFGEF1	0	genome.wustl.edu	37	8	68184034	68184034	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	68184034	68184034	T	-	DEL	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	frame_shift_del	c.1475	p.N492fs	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				101	0	0	40	7	14.8936
KCNB2	0	genome.wustl.edu	37	8	73480397	73480397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	73480397	73480397	A	-	DEL	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	frame_shift_del	c.428	p.E146fs	1.000	prints_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				248	1	0.401606	89	14	13.5922
ZFHX4	0	genome.wustl.edu	37	8	77775599	77775599	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	77775599	77775599	A	-	DEL	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_del	c.9649	p.E3219fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				176	0	0	70	8	10.2564
POP1	0	genome.wustl.edu	37	8	99168468	99168468	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	8	99168468	99168468	A	-	DEL	POP1	ENST00000349693	human	ensembl	74_37	+1	known	frame_shift_del	c.2248	p.T752fs	0.001	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				186	0	0	105	13	11.0169
GALNT12	0	genome.wustl.edu	37	9	101599309	101599309	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	101599309	101599309	T	-	DEL	GALNT12	ENST00000375011	human	ensembl	74_37	+1	known	frame_shift_del	c.1091	p.F365fs	0.998	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT12	HGNC	ENSG00000119514				340	0	0	148	12	7.5
INIP	0	genome.wustl.edu	37	9	115456355	115456355	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	115456355	115456355	A	-	DEL	INIP	ENST00000476599	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.067	-	-	-	no_errors	INIP	HGNC	ENSG00000148153				48	0	0	21	11	34.375
BRD3	0	genome.wustl.edu	37	9	136918528	136918529	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	136918528	136918529	-	G	INS	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	frame_shift_ins	c.72_71	p.E25fs	0.120:1.000	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				105	0	0	40	5	11.1111
EXD3	0	genome.wustl.edu	37	9	140243958	140243958	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	140243958	140243958	G	-	DEL	EXD3	ENST00000340951	human	ensembl	74_37	-1	known	frame_shift_del	c.1520	p.P507fs	0.000	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_Mut7-C_RNAse_dom,pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD3	HGNC	ENSG00000187609				33	0	0	16	6	27.2727
PSIP1	0	genome.wustl.edu	37	9	15472612	15472613	+	RNA	DEL	AA	AA	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	15472612	15472613	AA	-	DEL	PSIP1	ENST00000495873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985				108	1	0.917431	29	9	23.6842
ENSG00000272842	0	genome.wustl.edu	37	9	19371688	19371688	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	19371688	19371688	A	-	DEL	ENSG00000272842	ENST00000609609	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-513M16.7	Clone_based_vega_gene	ENSG00000272842				19	0	0	17	5	22.7273
VPS13A	0	genome.wustl.edu	37	9	79836219	79836219	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	79836219	79836219	A	-	DEL	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	frame_shift_del	c.1108	p.K372fs	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				154	1	0.645161	62	14	18.4211
IARS	0	genome.wustl.edu	37	9	95003101	95003101	+	RNA	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	95003101	95003101	A	-	DEL	IARS	ENST00000473915	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	IARS	HGNC	ENSG00000196305				19	0	0	24	3	11.1111
ASPN	0	genome.wustl.edu	37	9	95236979	95236979	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	9	95236979	95236979	A	-	DEL	ASPN	ENST00000375544	human	ensembl	74_37	-1	known	frame_shift_del	c.201	p.P68fs	0.936	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	ASPN	HGNC	ENSG00000106819				93	0	0	47	8	14.5455
KIR2DL2	0	genome.wustl.edu	37	GL000209.1	35142	35142	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	GL000209.1	35142	35142	A	-	DEL	KIR2DL2	ENST00000344867	human	ensembl	74_37	+1	known	frame_shift_del	c.811	p.N273fs	NULL	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL2	HGNC	ENSG00000215764				119	0	0	47	9	16.0714
NOX1	0	genome.wustl.edu	37	X	100117698	100117698	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	100117698	100117698	T	-	DEL	NOX1	ENST00000372966	human	ensembl	74_37	-1	known	frame_shift_del	c.449	p.K150fs	0.015	pfam_Fe3_Rdtase_TM_dom	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX1	HGNC	ENSG00000007952				593	0	0	279	44	13.6223
MORC4	0	genome.wustl.edu	37	X	106186092	106186093	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	106186092	106186093	CT	-	DEL	MORC4	ENST00000355610	human	ensembl	74_37	-1	known	frame_shift_del	c.2029_2028	p.G677fs	0.176:0.782	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131				274	0	0	104	21	16.8
MSL3	0	genome.wustl.edu	37	X	11790307	11790307	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	11790307	11790307	C	-	DEL	MSL3	ENST00000312196	human	ensembl	74_37	+1	known	frame_shift_del	c.1314	p.P440fs	0.970	pfam_MRG_dom	pfam_MRG_dom,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302				415	0	0	161	21	11.5385
ZNF280C	0	genome.wustl.edu	37	X	129370542	129370543	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	129370542	129370543	-	T	INS	ZNF280C	ENST00000370978	human	ensembl	74_37	-1	known	frame_shift_ins	c.565_564	p.P188fs	0.805:0.653	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277				178	0	0	71	17	19.3182
MAP7D3	0	genome.wustl.edu	37	X	135314030	135314030	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	135314030	135314030	G	-	DEL	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	frame_shift_del	c.1032	p.E345fs	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				226	0	0	90	21	18.9189
CXorf66	0	genome.wustl.edu	37	X	139038625	139038625	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	139038625	139038625	T	-	DEL	CXorf66	ENST00000370540	human	ensembl	74_37	-1	known	frame_shift_del	c.516	p.K172fs	0.000	NULL	NULL	-	no_errors	CXorf66	HGNC	ENSG00000203933				612	0	0	249	54	17.8218
DUSP9	0	genome.wustl.edu	37	X	152915674	152915674	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	152915674	152915674	G	-	DEL	DUSP9	ENST00000342782	human	ensembl	74_37	+1	known	frame_shift_del	c.1069	p.Q359fs	0.150	pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP9	HGNC	ENSG00000130829				238	0	0	105	24	18.6047
PLXNA3	0	genome.wustl.edu	37	X	153688565	153688565	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	153688565	153688565	G	-	DEL	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	frame_shift_del	c.42	p.A17fs	0.006	pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				162	1	0.613497	66	10	13.1579
CASK	0	genome.wustl.edu	37	X	41420817	41420817	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	41420817	41420817	T	-	DEL	CASK	ENST00000378163	human	ensembl	74_37	-1	known	frame_shift_del	c.1663	p.M555fs	1.000	pfam_PDZ,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Prot_kinase_dom,pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Guanylate_kin-like	-	no_errors	CASK	HGNC	ENSG00000147044				62	0	0	20	9	31.0345
MAGEE2	0	genome.wustl.edu	37	X	75004754	75004754	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8081-01A-11D-2340-08	TCGA-BR-8081-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	837ee400-9797-4e3f-a7f7-146ad1bde639	71909f3a-4187-4dca-8a94-f4fe08189521	X	75004754	75004754	G	-	DEL	MAGEE2	ENST00000373359	human	ensembl	74_37	-1	known	frame_shift_del	c.133	p.Q45fs	0.008	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675				136	0	0	54	11	16.9231
