Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
DVL1	0	genome.wustl.edu	37	1	1273992	1273992	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	1273992	1273992	C	T	SNP	DVL1	ENST00000378888	human	ensembl	74_37	-1	known	missense	c.1249	p.A417T	0.979	NULL	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam	-	no_errors	DVL1	HGNC	ENSG00000107404				59	0	0	32	2	5.88235
PRAMEF14	0	genome.wustl.edu	37	1	13669309	13669309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	13669309	13669309	C	T	SNP	PRAMEF14	ENST00000344998	human	ensembl	74_37	-1	known	missense	c.877	p.G293R	0.002	NULL	NULL	-	no_errors	PRAMEF14	HGNC	ENSG00000204481				47	0	0	13	7	35
PRDM2	0	genome.wustl.edu	37	1	14107267	14107267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	14107267	14107267	G	A	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.2977	p.V993I	0.008	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				154	0	0	105	12	10.2564
ENSG00000234978	0	genome.wustl.edu	37	1	142803746	142803746	+	RNA	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	142803746	142803746	A	G	SNP	ENSG00000234978	ENST00000423385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	RP11-423O2.5	Clone_based_vega_gene	ENSG00000234978				12	0	0	12	3	20
HIST2H3D	0	genome.wustl.edu	37	1	149785231	149785231	+	Silent	SNP	G	G	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	149785231	149785231	G	C	SNP	HIST2H3D	ENST00000331491	human	ensembl	74_37	-1	known	silent	c.6	p.A2	0.060	superfamily_Histone-fold	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST2H3D	HGNC	ENSG00000183598				78	0	0	43	7	14
POGZ	0	genome.wustl.edu	37	1	151378718	151378718	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	151378718	151378718	C	T	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	silent	c.2793	p.P931	0.003	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				164	0	0	75	13	14.7727
INTS3	0	genome.wustl.edu	37	1	153745683	153745683	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	153745683	153745683	G	A	SNP	INTS3	ENST00000318967	human	ensembl	74_37	+1	known	silent	c.3066	p.T1022	0.958	NULL	pfam_Int_cplx_su3	-	no_errors	INTS3	HGNC	ENSG00000143624				327	0	0	140	17	10.828
SEMA4A	0	genome.wustl.edu	37	1	156132886	156132886	+	Splice_Site	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	156132886	156132886	G	A	SNP	SEMA4A	ENST00000355014	human	ensembl	74_37	+1	known	splice_site	c.1134+1	e9+1	1.000	-	-	-	no_errors	SEMA4A	HGNC	ENSG00000196189				99	0	0	58	8	12.1212
TMEM79	0	genome.wustl.edu	37	1	156255196	156255196	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	156255196	156255196	A	G	SNP	TMEM79	ENST00000295694	human	ensembl	74_37	+1	known	missense	c.179	p.E60G	0.048	NULL	NULL	-	no_errors	TMEM79	HGNC	ENSG00000163472				96	0	0	43	12	21.8182
ETV3L	0	genome.wustl.edu	37	1	157068996	157068996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	157068996	157068996	C	T	SNP	ETV3L	ENST00000454449	human	ensembl	74_37	-1	known	missense	c.233	p.R78H	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV3L	HGNC	ENSG00000253831				98	0	0	58	7	10.7692
FCRL2	0	genome.wustl.edu	37	1	157740399	157740399	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	157740399	157740399	T	G	SNP	FCRL2	ENST00000361516	human	ensembl	74_37	-1	known	missense	c.110	p.K37T	0.000	smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL2	HGNC	ENSG00000132704				82	0	0	42	8	16
FCRL6	0	genome.wustl.edu	37	1	159779472	159779472	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	159779472	159779472	G	T	SNP	FCRL6	ENST00000368106	human	ensembl	74_37	+1	known	missense	c.885	p.K295N	0.000	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL6	HGNC	ENSG00000181036				83	0	0	46	4	8
SELE	0	genome.wustl.edu	37	1	169696647	169696647	+	Silent	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	169696647	169696647	C	A	SNP	SELE	ENST00000333360	human	ensembl	74_37	-1	known	silent	c.1488	p.L496	0.007	superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELE	HGNC	ENSG00000007908				74	0	0	46	5	9.80392
CACNA1E	0	genome.wustl.edu	37	1	181727101	181727101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	181727101	181727101	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.4348	p.A1450T	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				184	1	0.540541	86	5	5.49451
PAX7	0	genome.wustl.edu	37	1	19062320	19062320	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	19062320	19062320	C	T	SNP	PAX7	ENST00000375375	human	ensembl	74_37	+1	known	silent	c.1350	p.T450	0.994	NULL	pfam_Paired_dom,pfam_Homeobox_dom,pfam_Pax7,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX7	HGNC	ENSG00000009709				229	0	0	90	5	5.26316
PRELP	0	genome.wustl.edu	37	1	203455927	203455927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	203455927	203455927	G	A	SNP	PRELP	ENST00000343110	human	ensembl	74_37	+1	known	missense	c.1067	p.R356Q	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PRELP	HGNC	ENSG00000188783				83	0	0	58	6	9.375
LRRN2	0	genome.wustl.edu	37	1	204588700	204588700	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	204588700	204588700	C	G	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.421	p.A141P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				280	0	0	99	38	27.7372
HSPG2	0	genome.wustl.edu	37	1	22199882	22199882	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	22199882	22199882	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3779	p.G1260A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				302	0	0	133	49	26.9231
OBSCN	0	genome.wustl.edu	37	1	228430947	228430947	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	228430947	228430947	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.2993	p.A998G	0.015	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				52	0	0	7	13	65
OBSCN	0	genome.wustl.edu	37	1	228434292	228434292	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	228434292	228434292	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3821	p.A1274G	0.014	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				181	0	0	45	31	40.7895
EPHB2	0	genome.wustl.edu	37	1	23191577	23191577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	23191577	23191577	G	A	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	missense	c.1175	p.R392H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				104	0	0	54	8	12.9032
EPHB2	0	genome.wustl.edu	37	1	23233321	23233321	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	23233321	23233321	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	silent	c.2007	p.S669	0.904	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				96	0	0	45	7	13.4615
KIF26B	0	genome.wustl.edu	37	1	245704126	245704126	+	Silent	SNP	T	T	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	245704126	245704126	T	G	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	silent	c.1224	p.S408	0.040	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				226	0	0	106	10	8.62069
OR2W3	0	genome.wustl.edu	37	1	248059005	248059005	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	248059005	248059005	C	T	SNP	OR2W3	ENST00000360358	human	ensembl	74_37	+1	known	silent	c.117	p.L39	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2W3	HGNC	ENSG00000238243				254	0	0	121	39	24.375
OR2L13	0	genome.wustl.edu	37	1	248263219	248263219	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	248263219	248263219	C	A	SNP	OR2L13	ENST00000358120	human	ensembl	74_37	+1	known	missense	c.542	p.P181Q	0.022	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L13	HGNC	ENSG00000196071				282	1	0.353357	164	36	18
OR2T3	0	genome.wustl.edu	37	1	248637256	248637256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	248637256	248637256	C	T	SNP	OR2T3	ENST00000359594	human	ensembl	74_37	+1	known	missense	c.605	p.T202M	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T3	HGNC	ENSG00000196539				373	0	0	249	16	6.03774
RHD	0	genome.wustl.edu	37	1	25617155	25617155	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	25617155	25617155	C	A	SNP	RHD	ENST00000328664	human	ensembl	74_37	+1	known	missense	c.359	p.A120D	0.002	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHD	HGNC	ENSG00000187010				164	0	0	80	11	12.0879
HMGN2	0	genome.wustl.edu	37	1	26801762	26801762	+	RNA	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	26801762	26801762	G	T	SNP	HMGN2	ENST00000460563	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGN2	HGNC	ENSG00000198830				9	0	0	4	8	66.6667
ARID1A	0	genome.wustl.edu	37	1	27105513	27105513	+	Splice_Site	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	27105513	27105513	G	A	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	splice_site	c.5125-1	e20-1	1.000	-	-	-	no_errors	ARID1A	HGNC	ENSG00000117713				502	0	0	156	147	48.5149
PTPRU	0	genome.wustl.edu	37	1	29630479	29630479	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	29630479	29630479	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	silent	c.2619	p.A873	0.149	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				124	0	0	37	13	26
ZNF362	0	genome.wustl.edu	37	1	33741707	33741707	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	33741707	33741707	C	T	SNP	ZNF362	ENST00000373428	human	ensembl	74_37	+1	known	silent	c.45	p.A15	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094				139	0	0	53	5	8.62069
DFFB	0	genome.wustl.edu	37	1	3775293	3775293	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	3775293	3775293	C	T	SNP	DFFB	ENST00000378209	human	ensembl	74_37	+1	known	silent	c.126	p.R42	0.001	pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	pfam_Apoptosis_DFF40,pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	DFFB	HGNC	ENSG00000169598				110	0	0	56	8	12.5
MACF1	0	genome.wustl.edu	37	1	39851472	39851472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	39851472	39851472	G	A	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.8029	p.E2677K	0.867	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				115	0	0	56	4	6.66667
CHD5	0	genome.wustl.edu	37	1	6189120	6189120	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	6189120	6189120	G	A	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	missense	c.3397	p.R1133C	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				41	0	0	24	5	17.2414
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74957799	74957799	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	74957799	74957799	A	C	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	missense	c.2542	p.S848R	0.999	NULL	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				347	0	0	159	49	23.5577
LRRC8C	0	genome.wustl.edu	37	1	90178606	90178606	+	Silent	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	90178606	90178606	C	A	SNP	LRRC8C	ENST00000370454	human	ensembl	74_37	+1	known	silent	c.477	p.I159	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488				175	0	0	109	21	16.1538
LRRC8D	0	genome.wustl.edu	37	1	90400677	90400677	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	90400677	90400677	C	T	SNP	LRRC8D	ENST00000337338	human	ensembl	74_37	+1	known	nonsense	c.2050	p.R684*	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492				130	0	0	91	6	6.18557
TGFBR3	0	genome.wustl.edu	37	1	92177810	92177810	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	92177810	92177810	T	C	SNP	TGFBR3	ENST00000212355	human	ensembl	74_37	-1	known	missense	c.2156	p.K719R	0.409	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	TGFBR3	HGNC	ENSG00000069702				54	0	0	32	10	23.8095
RPAP2	0	genome.wustl.edu	37	1	92846337	92846337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	92846337	92846337	G	A	SNP	RPAP2	ENST00000610020	human	ensembl	74_37	+1	known	missense	c.1745	p.R582Q	1.000	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484				180	0	0	112	6	5.08475
GTPBP4	0	genome.wustl.edu	37	10	1058577	1058577	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	1058577	1058577	C	A	SNP	GTPBP4	ENST00000360803	human	ensembl	74_37	+1	known	missense	c.1517	p.P506H	1.000	NULL	pfam_NOG1_Rossman_fold_dom,pfam_NOG_C,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_MIRO-like,superfamily_P-loop_NTPase,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP4	HGNC	ENSG00000107937				67	0	0	36	3	7.69231
C10orf90	0	genome.wustl.edu	37	10	128149986	128149986	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	128149986	128149986	C	G	SNP	C10orf90	ENST00000544758	human	ensembl	74_37	-1	known	missense	c.1994	p.R665T	0.000	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493				59	0	0	25	8	24.2424
KNDC1	0	genome.wustl.edu	37	10	135011860	135011860	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	135011860	135011860	C	T	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	silent	c.1926	p.S642	0.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				15	0	0	4	3	42.8571
MKX	0	genome.wustl.edu	37	10	28023608	28023608	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	28023608	28023608	C	A	SNP	MKX	ENST00000375790	human	ensembl	74_37	-1	known	missense	c.615	p.E205D	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MKX	HGNC	ENSG00000150051				185	0	0	95	13	12.037
EPC1	0	genome.wustl.edu	37	10	32576130	32576130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	32576130	32576130	C	T	SNP	EPC1	ENST00000263062	human	ensembl	74_37	-1	known	missense	c.1048	p.A350T	1.000	NULL	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616				146	0	0	78	10	11.3636
ARID5B	0	genome.wustl.edu	37	10	63851485	63851485	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	63851485	63851485	G	A	SNP	ARID5B	ENST00000279873	human	ensembl	74_37	+1	known	missense	c.2263	p.V755I	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347				217	0	0	116	9	7.2
PTEN	0	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	89717672	89717672	C	T	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	nonsense	c.697	p.R233*	0.984	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				146	1	0.680272	79	16	16.8421
DNTT	0	genome.wustl.edu	37	10	98079101	98079101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	98079101	98079101	C	T	SNP	DNTT	ENST00000371174	human	ensembl	74_37	+1	known	missense	c.461	p.A154V	0.881	superfamily_DNA_pol_b-like_N,pirsf_TdT/Mu	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447				296	1	0.3367	157	10	5.98802
EXOSC1	0	genome.wustl.edu	37	10	99196230	99196230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	99196230	99196230	C	T	SNP	EXOSC1	ENST00000370902	human	ensembl	74_37	-1	known	missense	c.560	p.R187Q	1.000	NULL	pfam_EXOSC1,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1	-	no_errors	EXOSC1	HGNC	ENSG00000171311				254	0	0	129	10	7.19424
PDGFD	0	genome.wustl.edu	37	11	103866942	103866942	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	103866942	103866942	C	A	SNP	PDGFD	ENST00000393158	human	ensembl	74_37	-1	known	nonsense	c.361	p.E121*	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_PDGF/VEGF_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFD	HGNC	ENSG00000170962				77	0	0	60	13	17.8082
DDI1	0	genome.wustl.edu	37	11	103908214	103908214	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	103908214	103908214	A	T	SNP	DDI1	ENST00000302259	human	ensembl	74_37	+1	known	missense	c.664	p.N222Y	1.000	pfam_Peptidase_aspartic_DDI1-type	pfam_Peptidase_aspartic_DDI1-type,pfam_Ubiquitin_dom,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967				340	0	0	113	8	6.61157
AMPD3	0	genome.wustl.edu	37	11	10526171	10526171	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	10526171	10526171	A	G	SNP	AMPD3	ENST00000396553	human	ensembl	74_37	+1	known	missense	c.2092	p.R698G	0.997	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805				232	0	0	110	9	7.56303
ANKK1	0	genome.wustl.edu	37	11	113268051	113268051	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	113268051	113268051	G	A	SNP	ANKK1	ENST00000303941	human	ensembl	74_37	+1	known	missense	c.944	p.R315H	0.000	NULL	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	ANKK1	HGNC	ENSG00000170209				46	0	0	26	3	10.3448
NXPE1	0	genome.wustl.edu	37	11	114401135	114401135	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	114401135	114401135	C	A	SNP	NXPE1	ENST00000424269	human	ensembl	74_37	-1	known	missense	c.595	p.G199C	0.993	pfam_NXPH/NXPE	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE1	HGNC	ENSG00000095110				124	0	0	70	4	5.40541
BACE1	0	genome.wustl.edu	37	11	117161234	117161234	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	117161234	117161234	G	A	SNP	BACE1	ENST00000313005	human	ensembl	74_37	-1	known	nonsense	c.1234	p.R412*	1.000	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Pept_A1_BACE,prints_Pept_A1_BACE1,prints_Aspartic_peptidase	-	no_errors	BACE1	HGNC	ENSG00000186318				84	0	0	40	5	11.1111
IL10RA	0	genome.wustl.edu	37	11	117860290	117860290	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	117860290	117860290	C	A	SNP	IL10RA	ENST00000227752	human	ensembl	74_37	+1	known	missense	c.322	p.H108N	0.000	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL10RA	HGNC	ENSG00000110324				98	0	0	43	11	20.3704
ROBO3	0	genome.wustl.edu	37	11	124747173	124747173	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	124747173	124747173	G	A	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	silent	c.2814	p.P938	0.988	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134				236	0	0	100	13	11.5044
SOX6	0	genome.wustl.edu	37	11	16007846	16007846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	16007846	16007846	C	T	SNP	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	missense	c.2087	p.R696H	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				302	1	0.330033	162	14	7.95455
USH1C	0	genome.wustl.edu	37	11	17542436	17542436	+	Silent	SNP	T	T	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	17542436	17542436	T	G	SNP	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	silent	c.1191	p.V397	0.001	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611				634	1	0.15748	300	67	18.2561
UEVLD	0	genome.wustl.edu	37	11	18579822	18579822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	18579822	18579822	G	A	SNP	UEVLD	ENST00000396197	human	ensembl	74_37	-1	known	missense	c.668	p.T223M	0.000	pfam_Lactate/malate_DH_N	pfam_UEV_N,pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Lactate_DH/Glyco_Ohase_4_C,prints_L-lactate/malate_DH	-	no_errors	UEVLD	HGNC	ENSG00000151116				105	0	0	68	7	9.33333
SPTY2D1	0	genome.wustl.edu	37	11	18636447	18636447	+	Silent	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	18636447	18636447	G	T	SNP	SPTY2D1	ENST00000336349	human	ensembl	74_37	-1	known	silent	c.1374	p.P458	0.000	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119				107	0	0	69	9	11.5385
HTATIP2	0	genome.wustl.edu	37	11	20398124	20398124	+	Splice_Site	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	20398124	20398124	A	G	SNP	HTATIP2	ENST00000419348	human	ensembl	74_37	+1	known	splice_site	c.406-2	e4-2	1.000	-	-	-	no_errors	HTATIP2	HGNC	ENSG00000109854				197	0	0	98	13	11.7117
RPL26P30	0	genome.wustl.edu	37	11	2356952	2356952	+	RNA	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	2356952	2356952	C	A	SNP	RPL26P30	ENST00000602923	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL26P30	HGNC	ENSG00000236264				261	0	0	114	21	15.5556
TRPM5	0	genome.wustl.edu	37	11	2432908	2432908	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	2432908	2432908	A	T	SNP	TRPM5	ENST00000452833	human	ensembl	74_37	-1	known	missense	c.2570	p.I857K	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985				154	0	0	55	14	20.2899
KCNA4	0	genome.wustl.edu	37	11	30033696	30033696	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	30033696	30033696	C	A	SNP	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	missense	c.530	p.R177L	0.997	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				101	0	0	45	14	23.7288
LMO2	0	genome.wustl.edu	37	11	33880991	33880991	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	33880991	33880991	A	C	SNP	LMO2	ENST00000257818	human	ensembl	74_37	-1	known	missense	c.595	p.C199G	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO2	HGNC	ENSG00000135363				87	0	0	51	4	7.27273
EXT2	0	genome.wustl.edu	37	11	44129759	44129759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	44129759	44129759	G	A	SNP	EXT2	ENST00000395673	human	ensembl	74_37	+1	known	missense	c.596	p.R199H	1.000	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348				68	0	0	32	5	13.5135
CHST1	0	genome.wustl.edu	37	11	45672345	45672345	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	45672345	45672345	G	A	SNP	CHST1	ENST00000308064	human	ensembl	74_37	-1	known	silent	c.129	p.A43	0.990	pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264				140	0	0	46	16	25.8065
OR51E1	0	genome.wustl.edu	37	11	4674130	4674130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	4674130	4674130	G	A	SNP	OR51E1	ENST00000396952	human	ensembl	74_37	+1	known	missense	c.374	p.R125H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E1	HGNC	ENSG00000180785				83	0	0	64	10	13.5135
FOLH1	0	genome.wustl.edu	37	11	49208318	49208318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	49208318	49208318	C	T	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	missense	c.517	p.D173N	1.000	pfam_Protease-assoc_domain	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205				149	0	0	60	6	9.09091
OR5M3	0	genome.wustl.edu	37	11	56237824	56237824	+	Silent	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	56237824	56237824	A	G	SNP	OR5M3	ENST00000312240	human	ensembl	74_37	-1	known	silent	c.150	p.S50	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M3	HGNC	ENSG00000174937				188	0	0	123	7	5.38462
TNKS1BP1	0	genome.wustl.edu	37	11	57077351	57077351	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	57077351	57077351	G	C	SNP	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	missense	c.2834	p.A945G	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				287	0	0	136	17	11.1111
OR52L1	0	genome.wustl.edu	37	11	6008025	6008025	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	6008025	6008025	C	A	SNP	OR52L1	ENST00000332249	human	ensembl	74_37	-1	known	missense	c.136	p.A46S	0.001	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52L1	HGNC	ENSG00000183313				71	0	0	29	11	27.5
CDHR5	0	genome.wustl.edu	37	11	619478	619478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	619478	619478	G	A	SNP	CDHR5	ENST00000358353	human	ensembl	74_37	-1	known	missense	c.1289	p.A430V	0.011	superfamily_Cadherin-like,pfscan_Cadherin	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	-	no_errors	CDHR5	HGNC	ENSG00000099834				119	0	0	73	7	8.75
GANAB	0	genome.wustl.edu	37	11	62400952	62400952	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	62400952	62400952	C	G	SNP	GANAB	ENST00000346178	human	ensembl	74_37	-1	known	missense	c.661	p.A221P	1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GANAB	HGNC	ENSG00000089597				153	0	0	70	23	24.7312
BBS1	0	genome.wustl.edu	37	11	66291009	66291009	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	66291009	66291009	G	T	SNP	BBS1	ENST00000419755	human	ensembl	74_37	+1	known	missense	c.1024	p.G342C	1.000	superfamily_Quinonprotein_ADH-like_supfam	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	CTD-3074O7.11	Clone_based_vega_gene	ENSG00000256349				94	0	0	52	5	8.77193
TALDO1	0	genome.wustl.edu	37	11	764847	764847	+	RNA	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	764847	764847	G	A	SNP	TALDO1	ENST00000532202	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	TALDO1	HGNC	ENSG00000177156				157	0	0	54	7	11.4754
MYO7A	0	genome.wustl.edu	37	11	76900480	76900480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	76900480	76900480	G	A	SNP	MYO7A	ENST00000409709	human	ensembl	74_37	+1	known	missense	c.3595	p.V1199M	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474				137	0	0	54	7	11.4754
NRIP3	0	genome.wustl.edu	37	11	9007342	9007342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	9007342	9007342	G	A	SNP	NRIP3	ENST00000309166	human	ensembl	74_37	-1	known	missense	c.478	p.R160W	1.000	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	-	no_errors	NRIP3	HGNC	ENSG00000175352				203	0	0	113	6	5.04202
SCUBE2	0	genome.wustl.edu	37	11	9082038	9082038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	9082038	9082038	C	T	SNP	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	missense	c.884	p.R295H	1.000	smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356				212	0	0	116	13	10.0775
UTP20	0	genome.wustl.edu	37	12	101720872	101720872	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	101720872	101720872	C	T	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	nonsense	c.3055	p.R1019*	0.998	pfam_DRIM,superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				132	0	0	77	11	12.5
CCDC60	0	genome.wustl.edu	37	12	119954458	119954458	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	119954458	119954458	A	G	SNP	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	missense	c.914	p.E305G	1.000	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273				106	0	0	43	6	12.2449
CLIP1	0	genome.wustl.edu	37	12	122825399	122825399	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	122825399	122825399	G	A	SNP	CLIP1	ENST00000540338	human	ensembl	74_37	-1	known	silent	c.2352	p.S784	1.000	superfamily_Prefoldin	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779				177	1	0.561798	133	21	13.6364
ATP6V0A2	0	genome.wustl.edu	37	12	124209219	124209219	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	124209219	124209219	G	A	SNP	ATP6V0A2	ENST00000330342	human	ensembl	74_37	+1	known	missense	c.313	p.E105K	1.000	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A2	HGNC	ENSG00000185344				318	0	0	154	16	9.41176
P2RX2	0	genome.wustl.edu	37	12	133196038	133196038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	133196038	133196038	G	A	SNP	P2RX2	ENST00000343948	human	ensembl	74_37	+1	known	missense	c.187	p.V63M	1.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848				186	0	0	89	15	14.4231
POLE	0	genome.wustl.edu	37	12	133237570	133237570	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	133237570	133237570	G	A	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	silent	c.3045	p.D1015	0.992	pfam_DNA-dir_DNA_pol_B_multi_dom	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				192	0	0	107	12	10.084
ENSG00000258325	0	genome.wustl.edu	37	12	2921819	2921819	+	RNA	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	2921819	2921819	G	A	SNP	ENSG00000258325	ENST00000547794	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.206	-	-	-	no_errors	RP4-816N1.6	Clone_based_vega_gene	ENSG00000258325				24	0	0	16	7	30.4348
FGD4	0	genome.wustl.edu	37	12	32755181	32755181	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	32755181	32755181	A	G	SNP	FGD4	ENST00000427716	human	ensembl	74_37	+1	known	missense	c.923	p.N308S	0.884	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132				171	0	0	89	9	9.18367
SYT10	0	genome.wustl.edu	37	12	33529822	33529822	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	33529822	33529822	C	T	SNP	SYT10	ENST00000228567	human	ensembl	74_37	-1	known	silent	c.1515	p.A505	0.720	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT10	HGNC	ENSG00000110975				111	0	0	44	7	13.7255
PLEKHA8P1	0	genome.wustl.edu	37	12	45568160	45568160	+	RNA	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	45568160	45568160	A	G	SNP	PLEKHA8P1	ENST00000256692	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	PLEKHA8P1	HGNC	ENSG00000134297				205	2	0.966184	121	15	11.0294
KRT81	0	genome.wustl.edu	37	12	52681893	52681893	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	52681893	52681893	C	T	SNP	KRT81	ENST00000327741	human	ensembl	74_37	-1	known	missense	c.775	p.V259M	0.989	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT81	HGNC	ENSG00000205426				180	0	0	77	27	25.9615
KRT75	0	genome.wustl.edu	37	12	52822136	52822136	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	52822136	52822136	C	G	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1286	p.R429P	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				131	0	0	34	36	51.4286
IRAK3	0	genome.wustl.edu	37	12	66641720	66641720	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	66641720	66641720	C	T	SNP	IRAK3	ENST00000261233	human	ensembl	74_37	+1	known	silent	c.1560	p.D520	0.010	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Death_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376				198	0	0	92	18	16.3636
C1S	0	genome.wustl.edu	37	12	7177276	7177276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	7177276	7177276	C	T	SNP	C1S	ENST00000328916	human	ensembl	74_37	+1	known	missense	c.1388	p.A463V	0.971	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	C1S	HGNC	ENSG00000182326				104	0	0	62	5	7.46269
CD163	0	genome.wustl.edu	37	12	7640606	7640606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	7640606	7640606	C	T	SNP	CD163	ENST00000359156	human	ensembl	74_37	-1	known	missense	c.1498	p.G500S	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	CD163	HGNC	ENSG00000177575				59	0	0	32	6	15.7895
FAM90A1	0	genome.wustl.edu	37	12	8374624	8374624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	8374624	8374624	G	A	SNP	FAM90A1	ENST00000307435	human	ensembl	74_37	-1	known	missense	c.1189	p.R397W	0.004	NULL	NULL	-	no_errors	FAM90A1	HGNC	ENSG00000171847				80	0	0	26	4	13.3333
TMCC3	0	genome.wustl.edu	37	12	94976111	94976111	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	94976111	94976111	C	T	SNP	TMCC3	ENST00000261226	human	ensembl	74_37	-1	known	silent	c.282	p.A94	0.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704				221	0	0	113	16	12.4031
NALCN	0	genome.wustl.edu	37	13	101712255	101712255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	13	101712255	101712255	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.4820	p.R1607Q	0.998	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				134	0	0	59	9	13.2353
COL4A2	0	genome.wustl.edu	37	13	111082904	111082904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	13	111082904	111082904	C	T	SNP	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	missense	c.598	p.R200C	0.084	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871				231	0	0	112	14	11.1111
DCLK1	0	genome.wustl.edu	37	13	36686031	36686031	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	13	36686031	36686031	C	T	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.698	p.R233H	1.000	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				139	0	0	61	17	21.7949
PCDH9	0	genome.wustl.edu	37	13	67801710	67801710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	13	67801710	67801710	C	T	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	missense	c.863	p.R288Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				162	0	0	91	11	10.7843
SLITRK5	0	genome.wustl.edu	37	13	88329874	88329874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	13	88329874	88329874	C	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.2231	p.P744L	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				178	0	0	64	4	5.88235
IPO5	0	genome.wustl.edu	37	13	98652834	98652834	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	13	98652834	98652834	G	T	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.1097	p.C366F	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				125	0	0	37	48	56.4706
OR11H4	0	genome.wustl.edu	37	14	20711877	20711877	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	14	20711877	20711877	C	T	SNP	OR11H4	ENST00000315409	human	ensembl	74_37	+1	known	silent	c.927	p.L309	0.002	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11H4	HGNC	ENSG00000176198				149	1	0.666667	77	28	26.6667
ARHGEF40	0	genome.wustl.edu	37	14	21549161	21549161	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	14	21549161	21549161	C	T	SNP	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	missense	c.2626	p.R876C	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				216	0	0	98	22	18.3333
RPGRIP1	0	genome.wustl.edu	37	14	21793997	21793997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	14	21793997	21793997	C	T	SNP	RPGRIP1	ENST00000206660	human	ensembl	74_37	+1	known	missense	c.2375	p.S792L	0.060	superfamily_C2_dom	pfam_DUF3250,superfamily_C2_dom	-	no_errors	RPGRIP1	HGNC	ENSG00000092200				59	0	0	39	4	9.30233
SLC22A17	0	genome.wustl.edu	37	14	23817839	23817839	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	14	23817839	23817839	G	T	SNP	SLC22A17	ENST00000206544	human	ensembl	74_37	-1	known	missense	c.568	p.L190M	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A17	HGNC	ENSG00000092096				149	0	0	75	9	10.7143
NFATC4	0	genome.wustl.edu	37	14	24836397	24836397	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	14	24836397	24836397	G	T	SNP	NFATC4	ENST00000413692	human	ensembl	74_37	+1	known	missense	c.137	p.G46V	0.793	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968				80	0	0	54	7	11.4754
ARHGAP5	0	genome.wustl.edu	37	14	32561828	32561828	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	14	32561828	32561828	C	T	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	silent	c.1953	p.A651	0.880	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				236	0	0	133	20	13.0719
SNX6	0	genome.wustl.edu	37	14	35037121	35037121	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	14	35037121	35037121	G	A	SNP	SNX6	ENST00000362031	human	ensembl	74_37	-1	known	silent	c.1056	p.A352	0.996	pfam_Vps5_C,pfam_BAR_dom,pirsf_Snx5_Snx6	pfam_Phox,pfam_Vps5_C,pfam_BAR_dom,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX6	HGNC	ENSG00000129515				90	0	0	63	7	10
FOXA1	0	genome.wustl.edu	37	14	38061832	38061832	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	14	38061832	38061832	T	C	SNP	FOXA1	ENST00000250448	human	ensembl	74_37	-1	known	missense	c.157	p.M53V	1.000	pfam_Fork-head_N	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514				155	0	0	75	4	5.06329
HERC2	0	genome.wustl.edu	37	15	28441687	28441687	+	Silent	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	28441687	28441687	A	G	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.8040	p.I2680	0.992	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				170	0	0	81	5	5.81395
FAN1	0	genome.wustl.edu	37	15	31197648	31197648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	31197648	31197648	C	T	SNP	FAN1	ENST00000362065	human	ensembl	74_37	+1	known	missense	c.782	p.A261V	0.000	NULL	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690				111	0	0	54	6	10
IVD	0	genome.wustl.edu	37	15	40699950	40699950	+	RNA	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	40699950	40699950	C	T	SNP	IVD	ENST00000490194	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IVD	HGNC	ENSG00000128928				110	0	0	61	8	11.5942
SPTBN5	0	genome.wustl.edu	37	15	42145505	42145505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	42145505	42145505	C	T	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	missense	c.10121	p.R3374Q	0.023	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877				99	0	0	34	6	15
SEMA6D	0	genome.wustl.edu	37	15	48059278	48059278	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	48059278	48059278	G	A	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	missense	c.1753	p.G585S	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				79	0	0	43	6	12.2449
DMXL2	0	genome.wustl.edu	37	15	51766637	51766637	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	51766637	51766637	C	A	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.7117	p.A2373S	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				109	1	0.909091	32	28	46.6667
LYSMD2	0	genome.wustl.edu	37	15	52017115	52017115	+	Silent	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	52017115	52017115	G	T	SNP	LYSMD2	ENST00000267838	human	ensembl	74_37	-1	known	silent	c.477	p.P159	0.956	NULL	pfam_LysM_dom,smart_LysM_dom	-	no_errors	LYSMD2	HGNC	ENSG00000140280				176	0	0	137	8	5.51724
DYX1C1	0	genome.wustl.edu	37	15	55724733	55724733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	55724733	55724733	C	T	SNP	DYX1C1	ENST00000321149	human	ensembl	74_37	-1	known	missense	c.1115	p.R372H	1.000	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_CS_dom,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	DYX1C1	HGNC	ENSG00000256061				147	0	0	71	6	7.79221
ITGA11	0	genome.wustl.edu	37	15	68649512	68649512	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	68649512	68649512	C	T	SNP	ITGA11	ENST00000315757	human	ensembl	74_37	-1	known	silent	c.726	p.T242	0.004	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809				103	0	0	41	6	12.766
ISLR2	0	genome.wustl.edu	37	15	74425596	74425596	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	74425596	74425596	C	T	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	silent	c.501	p.F167	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				163	0	0	83	6	6.74157
ADAMTSL3	0	genome.wustl.edu	37	15	84651760	84651760	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	84651760	84651760	A	G	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	missense	c.3380	p.E1127G	0.925	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218				83	0	0	68	5	6.84932
ARRDC4	0	genome.wustl.edu	37	15	98514381	98514381	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	98514381	98514381	C	T	SNP	ARRDC4	ENST00000268042	human	ensembl	74_37	+1	known	silent	c.1221	p.D407	0.000	NULL	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC4	HGNC	ENSG00000140450				211	0	0	75	20	21.0526
LOC81691	0	genome.wustl.edu	37	16	20855996	20855996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	20855996	20855996	G	A	SNP	LOC81691	ENST00000261377	human	ensembl	74_37	+1	known	missense	c.1765	p.V589M	0.093	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_RRM_dom,superfamily_RNaseH-like_dom,smart_Exonuclease,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC004381.6	Clone_based_vega_gene	ENSG00000005189				129	0	0	84	7	7.69231
DNAH3	0	genome.wustl.edu	37	16	21042477	21042477	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	21042477	21042477	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.5329	p.R1777W	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				120	0	0	59	10	14.4928
POLR3E	0	genome.wustl.edu	37	16	22319478	22319478	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	22319478	22319478	C	T	SNP	POLR3E	ENST00000299853	human	ensembl	74_37	+1	known	missense	c.97	p.R33C	1.000	pfam_RNA_pol_III_Rpc5	pfam_RNA_pol_III_Rpc5	-	no_errors	POLR3E	HGNC	ENSG00000058600				123	0	0	46	7	13.2075
RBBP6	0	genome.wustl.edu	37	16	24579195	24579195	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	24579195	24579195	C	T	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	missense	c.2035	p.R679C	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				97	0	0	40	4	9.09091
SRCAP	0	genome.wustl.edu	37	16	30750774	30750774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	30750774	30750774	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.9413	p.R3138H	0.998	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				77	0	0	50	5	9.09091
TRIM72	0	genome.wustl.edu	37	16	31234251	31234251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	31234251	31234251	C	T	SNP	TRIM72	ENST00000322122	human	ensembl	74_37	+1	known	missense	c.844	p.R282W	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM72	HGNC	ENSG00000177238				178	0	0	79	29	26.8519
ZNF205	0	genome.wustl.edu	37	16	3168941	3168941	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	3168941	3168941	G	A	SNP	ZNF205	ENST00000219091	human	ensembl	74_37	+1	known	missense	c.520	p.A174T	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF205	HGNC	ENSG00000122386				217	0	0	80	7	8.04598
TFAP4	0	genome.wustl.edu	37	16	4312613	4312613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	4312613	4312613	C	T	SNP	TFAP4	ENST00000204517	human	ensembl	74_37	-1	known	missense	c.179	p.R60H	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFAP4	HGNC	ENSG00000090447				182	0	0	112	12	9.67742
MYLK3	0	genome.wustl.edu	37	16	46744689	46744689	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	46744689	46744689	C	A	SNP	MYLK3	ENST00000394809	human	ensembl	74_37	-1	known	missense	c.2127	p.L709F	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK3	HGNC	ENSG00000140795				314	1	0.31746	105	26	19.8473
CES5A	0	genome.wustl.edu	37	16	55903586	55903586	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	55903586	55903586	G	T	SNP	CES5A	ENST00000521992	human	ensembl	74_37	-1	known	missense	c.575	p.A192D	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398				26	0	0	20	6	23.0769
CDH8	0	genome.wustl.edu	37	16	61747880	61747880	+	RNA	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	61747880	61747880	A	G	SNP	CDH8	ENST00000583483	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	CDH8	HGNC	ENSG00000150394				121	0	0	63	17	21.25
SLC9A5	0	genome.wustl.edu	37	16	67290943	67290943	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	67290943	67290943	G	T	SNP	SLC9A5	ENST00000299798	human	ensembl	74_37	+1	known	missense	c.1262	p.R421M	0.998	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A5	HGNC	ENSG00000135740				196	0	0	125	16	11.3475
CTRL	0	genome.wustl.edu	37	16	67964638	67964638	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	67964638	67964638	G	A	SNP	CTRL	ENST00000574481	human	ensembl	74_37	-1	known	silent	c.309	p.S103	0.030	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CTRL	HGNC	ENSG00000141086				117	1	0.847458	49	15	23.4375
SF3B3	0	genome.wustl.edu	37	16	70563087	70563087	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	70563087	70563087	C	G	SNP	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	missense	c.382	p.R128G	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				117	1	0.847458	43	24	35.8209
DHODH	0	genome.wustl.edu	37	16	72055196	72055196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	72055196	72055196	C	T	SNP	DHODH	ENST00000219240	human	ensembl	74_37	+1	known	missense	c.691	p.R231C	0.011	pfam_Dihydroorotate_DH_1_2,pirsf_Dihydroorotate_DH_1_2,tigrfam_Dihydroorotate_DH_2	pfam_Dihydroorotate_DH_1_2,pirsf_Dihydroorotate_DH_1_2,tigrfam_Dihydroorotate_DH_2	-	no_errors	DHODH	HGNC	ENSG00000102967				19	0	0	13	2	13.3333
CHST5	0	genome.wustl.edu	37	16	75563965	75563965	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	75563965	75563965	G	A	SNP	CHST5	ENST00000541075	human	ensembl	74_37	-1	known	silent	c.336	p.S112	0.021	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702				111	0	0	51	8	13.5593
METTL22	0	genome.wustl.edu	37	16	8722947	8722947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	8722947	8722947	C	T	SNP	METTL22	ENST00000381920	human	ensembl	74_37	+1	known	missense	c.494	p.P165L	0.000	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL22	HGNC	ENSG00000067365				598	0	0	264	22	7.69231
SLC7A5	0	genome.wustl.edu	37	16	87870208	87870208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	87870208	87870208	C	T	SNP	SLC7A5	ENST00000261622	human	ensembl	74_37	-1	known	missense	c.1186	p.V396I	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A5	HGNC	ENSG00000103257				76	0	0	33	4	10.8108
MC1R	0	genome.wustl.edu	37	16	89986277	89986277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	89986277	89986277	C	T	SNP	MC1R	ENST00000555147	human	ensembl	74_37	+1	known	missense	c.611	p.A204V	0.938	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MSH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC1R	HGNC	ENSG00000258839				46	0	0	41	7	14.5833
GRIN2A	0	genome.wustl.edu	37	16	9857287	9857287	+	Splice_Site	SNP	T	T	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	9857287	9857287	T	G	SNP	GRIN2A	ENST00000404927	human	ensembl	74_37	-1	known	splice_site	c.3773-2	e13-2	0.860	-	-	-	no_errors	GRIN2A	HGNC	ENSG00000183454				118	0	0	53	10	15.873
MYH4	0	genome.wustl.edu	37	17	10354172	10354172	+	Silent	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	10354172	10354172	A	G	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	silent	c.3906	p.V1302	0.960	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424				145	0	0	108	8	6.89655
DNAH9	0	genome.wustl.edu	37	17	11806090	11806090	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	11806090	11806090	G	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.11461	p.A3821S	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				150	0	0	75	20	21.0526
FLJ36000	0	genome.wustl.edu	37	17	21909570	21909570	+	RNA	SNP	T	T	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	21909570	21909570	T	G	SNP	FLJ36000	ENST00000581223	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-744K17.9	Clone_based_vega_gene	ENSG00000266795				9	0	0	2	3	60
SSH2	0	genome.wustl.edu	37	17	27959108	27959108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	27959108	27959108	C	T	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	missense	c.3023	p.R1008K	0.994	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				129	0	0	71	29	29
NF1	0	genome.wustl.edu	37	17	29552243	29552243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	29552243	29552243	G	A	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	missense	c.1976	p.R659Q	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				263	0	0	151	11	6.79012
PLXDC1	0	genome.wustl.edu	37	17	37235398	37235398	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	37235398	37235398	G	A	SNP	PLXDC1	ENST00000315392	human	ensembl	74_37	-1	known	missense	c.1009	p.R337C	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold	pfam_Plexin_repeat,superfamily_Plexin-like_fold	-	no_errors	PLXDC1	HGNC	ENSG00000161381				104	0	0	67	8	10.6667
CASC3	0	genome.wustl.edu	37	17	38318390	38318390	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38318390	38318390	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	nonsense	c.592	p.Q198*	1.000	pfam_Btz_dom	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				108	0	0	62	21	25.3012
CASC3	0	genome.wustl.edu	37	17	38319064	38319064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38319064	38319064	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	missense	c.695	p.S232F	0.998	pfam_Btz_dom	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				95	0	0	49	13	20.9677
CASC3	0	genome.wustl.edu	37	17	38319117	38319117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38319117	38319117	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	missense	c.748	p.P250S	0.959	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				118	0	0	58	14	19.4444
CASC3	0	genome.wustl.edu	37	17	38323756	38323756	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38323756	38323756	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	silent	c.1542	p.V514	0.998	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				87	0	0	62	12	16.2162
CASC3	0	genome.wustl.edu	37	17	38323757	38323757	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38323757	38323757	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	nonsense	c.1543	p.Q515*	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				85	0	0	64	12	15.7895
CASC3	0	genome.wustl.edu	37	17	38323782	38323782	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38323782	38323782	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	missense	c.1568	p.S523L	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				93	0	0	79	13	14.1304
CASC3	0	genome.wustl.edu	37	17	38323785	38323785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38323785	38323785	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	missense	c.1571	p.S524F	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				97	0	0	76	14	15.5556
CASC3	0	genome.wustl.edu	37	17	38323834	38323834	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38323834	38323834	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	silent	c.1620	p.I540	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				94	0	0	71	10	12.3457
CASC3	0	genome.wustl.edu	37	17	38323862	38323862	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38323862	38323862	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	missense	c.1648	p.P550S	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				66	0	0	50	9	15.2542
CASC3	0	genome.wustl.edu	37	17	38324513	38324513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38324513	38324513	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	missense	c.1808	p.P603L	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				254	0	0	140	22	13.5802
CASC3	0	genome.wustl.edu	37	17	38324586	38324586	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38324586	38324586	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	silent	c.1881	p.V627	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				159	0	0	113	16	12.4031
CASC3	0	genome.wustl.edu	37	17	38324639	38324639	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38324639	38324639	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	missense	c.1934	p.P645L	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				122	0	0	102	9	8.10811
CASC3	0	genome.wustl.edu	37	17	38325584	38325584	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38325584	38325584	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	missense	c.1973	p.S658L	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				246	0	0	162	27	14.2857
CASC3	0	genome.wustl.edu	37	17	38325681	38325681	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38325681	38325681	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	silent	c.2070	p.I690	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				181	0	0	118	24	16.9014
CDC6	0	genome.wustl.edu	37	17	38458232	38458232	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	38458232	38458232	C	G	SNP	CDC6	ENST00000209728	human	ensembl	74_37	+1	known	missense	c.1662	p.I554M	1.000	pirsf_Cell_div_Cdc6/18	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6/18	-	no_errors	CDC6	HGNC	ENSG00000094804				158	0	0	85	10	10.5263
ENSG00000234477	0	genome.wustl.edu	37	17	39084647	39084647	+	RNA	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	39084647	39084647	G	T	SNP	ENSG00000234477	ENST00000418393	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AC004231.2	Clone_based_vega_gene	ENSG00000234477				240	0	0	157	51	24.5192
KRTAP4-7	0	genome.wustl.edu	37	17	39240615	39240615	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	39240615	39240615	C	T	SNP	KRTAP4-7	ENST00000391417	human	ensembl	74_37	+1	known	nonsense	c.157	p.Q53*	0.684	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-7	HGNC	ENSG00000240871				112	0	0	54	6	10
LOC100505782	0	genome.wustl.edu	37	17	39567653	39567653	+	RNA	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	39567653	39567653	G	A	SNP	LOC100505782	ENST00000432258	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC003958.2	Clone_based_vega_gene	ENSG00000234859				40	0	0	34	5	12.8205
HAP1	0	genome.wustl.edu	37	17	39888482	39888482	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	39888482	39888482	C	T	SNP	HAP1	ENST00000310778	human	ensembl	74_37	-1	known	silent	c.714	p.E238	1.000	pfam_HAP1_N	pfam_HAP1_N	-	no_errors	HAP1	HGNC	ENSG00000173805				143	0	0	55	13	19.1176
HAP1	0	genome.wustl.edu	37	17	39890671	39890671	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	39890671	39890671	C	T	SNP	HAP1	ENST00000310778	human	ensembl	74_37	-1	known	silent	c.216	p.S72	0.092	NULL	pfam_HAP1_N	-	no_errors	HAP1	HGNC	ENSG00000173805				39	0	0	21	10	32.2581
HSPB9	0	genome.wustl.edu	37	17	40274873	40274873	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	40274873	40274873	A	C	SNP	HSPB9	ENST00000355067	human	ensembl	74_37	+1	known	missense	c.5	p.Q2P	1.000	NULL	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom	-	no_errors	HSPB9	HGNC	ENSG00000197723				62	0	0	29	3	9.375
HOXB5	0	genome.wustl.edu	37	17	46669802	46669802	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	46669802	46669802	G	A	SNP	HOXB5	ENST00000239151	human	ensembl	74_37	-1	known	silent	c.579	p.D193	0.993	superfamily_Homeodomain-like,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB5	HGNC	ENSG00000120075				74	0	0	42	8	16
SPATA20	0	genome.wustl.edu	37	17	48628510	48628510	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	48628510	48628510	C	A	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	missense	c.1535	p.P512H	1.000	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				59	0	0	16	11	40.7407
CACNA1G	0	genome.wustl.edu	37	17	48701418	48701418	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	48701418	48701418	C	A	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.6211	p.L2071I	0.457	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				80	0	0	45	8	15.0943
USP6	0	genome.wustl.edu	37	17	5048857	5048857	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	5048857	5048857	T	C	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	missense	c.2150	p.M717T	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				124	0	0	57	7	10.9375
KIF2B	0	genome.wustl.edu	37	17	51901324	51901324	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	51901324	51901324	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	silent	c.930	p.T310	0.357	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				124	0	0	81	20	19.802
DGKE	0	genome.wustl.edu	37	17	54923170	54923170	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	54923170	54923170	G	T	SNP	DGKE	ENST00000284061	human	ensembl	74_37	+1	known	missense	c.744	p.Q248H	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933				79	0	0	43	5	10.4167
EPX	0	genome.wustl.edu	37	17	56272519	56272519	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	56272519	56272519	C	A	SNP	EPX	ENST00000225371	human	ensembl	74_37	+1	known	nonsense	c.789	p.C263*	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053				128	0	0	63	19	23.1707
SCN4A	0	genome.wustl.edu	37	17	62041068	62041068	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	62041068	62041068	T	C	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.1570	p.S524G	0.924	prints_Na_channel_a4su	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				29	0	0	21	4	16
TRIM47	0	genome.wustl.edu	37	17	73871176	73871176	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	73871176	73871176	G	A	SNP	TRIM47	ENST00000254816	human	ensembl	74_37	-1	known	silent	c.1305	p.D435	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM47	HGNC	ENSG00000132481				135	0	0	60	7	10.4478
MGAT5B	0	genome.wustl.edu	37	17	74878309	74878309	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	74878309	74878309	C	T	SNP	MGAT5B	ENST00000428789	human	ensembl	74_37	+1	known	silent	c.291	p.D97	0.808	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MGAT5B	HGNC	ENSG00000167889				54	0	0	26	10	27.7778
DNAH17	0	genome.wustl.edu	37	17	76490732	76490732	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	76490732	76490732	G	A	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	silent	c.6171	p.I2057	0.972	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				231	0	0	127	21	14.1892
DNAH17-AS1	0	genome.wustl.edu	37	17	76496429	76496429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	76496429	76496429	G	A	SNP	DNAH17-AS1	ENST00000598378	human	ensembl	74_37	+1	known	missense	c.361	p.G121S	1.000	NULL	NULL	-	no_errors	DNAH17-AS1	HGNC	ENSG00000268470				36	0	0	16	3	15.7895
CCDC40	0	genome.wustl.edu	37	17	78013909	78013909	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	78013909	78013909	G	T	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.392	p.S131I	0.000	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				145	0	0	62	4	6.06061
RNF213	0	genome.wustl.edu	37	17	78360611	78360611	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	78360611	78360611	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.14842	p.V4948M	0.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				85	0	0	46	7	13.2075
RPTOR	0	genome.wustl.edu	37	17	78857671	78857671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	78857671	78857671	C	T	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	missense	c.1741	p.L581F	1.000	pfam_HEAT,superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				126	0	0	66	18	21.4286
NPLOC4	0	genome.wustl.edu	37	17	79571725	79571725	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	79571725	79571725	A	G	SNP	NPLOC4	ENST00000374747	human	ensembl	74_37	-1	known	missense	c.683	p.F228S	1.000	pfam_NPL4_Zn-bd_put,pirsf_PolyUb_recognition_cplx_Npl4	pfam_NPL4,pfam_NPL4_Zn-bd_put,pfam_Npl4_Ub-like_dom,pirsf_PolyUb_recognition_cplx_Npl4	-	no_errors	NPLOC4	HGNC	ENSG00000182446				40	0	0	24	2	7.69231
FASN	0	genome.wustl.edu	37	17	80044363	80044363	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	80044363	80044363	C	A	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	missense	c.3499	p.A1167S	0.024	NULL	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				83	0	0	29	10	25.641
CCDC57	0	genome.wustl.edu	37	17	80159471	80159471	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	80159471	80159471	T	A	SNP	CCDC57	ENST00000389641	human	ensembl	74_37	-1	known	missense	c.350	p.Q117L	1.000	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155				41	0	0	27	3	10
NARF	0	genome.wustl.edu	37	17	80445942	80445942	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	80445942	80445942	A	G	SNP	NARF	ENST00000309794	human	ensembl	74_37	+1	known	missense	c.1280	p.E427G	0.968	pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARF	HGNC	ENSG00000141562				140	1	0.70922	76	14	15.5556
ANKRD29	0	genome.wustl.edu	37	18	21214092	21214092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	18	21214092	21214092	C	T	SNP	ANKRD29	ENST00000592179	human	ensembl	74_37	-1	known	missense	c.352	p.A118T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD29	HGNC	ENSG00000154065				82	0	0	67	5	6.94444
LAMA3	0	genome.wustl.edu	37	18	21407422	21407422	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	18	21407422	21407422	C	T	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	silent	c.2814	p.S938	0.299	NULL	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				87	0	0	66	5	7.04225
ZNF521	0	genome.wustl.edu	37	18	22806394	22806394	+	Silent	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	18	22806394	22806394	G	T	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	silent	c.1488	p.I496	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				129	0	0	71	9	11.25
DCC	0	genome.wustl.edu	37	18	51013255	51013255	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	18	51013255	51013255	G	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	silent	c.3825	p.P1275	0.828	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				194	0	0	96	7	6.79612
SERPINB12	0	genome.wustl.edu	37	18	61223522	61223522	+	Silent	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	18	61223522	61223522	T	C	SNP	SERPINB12	ENST00000269491	human	ensembl	74_37	+1	known	silent	c.130	p.L44	0.030	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB12	HGNC	ENSG00000166634				280	0	0	192	15	7.24638
CNDP2	0	genome.wustl.edu	37	18	72180886	72180886	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	18	72180886	72180886	G	T	SNP	CNDP2	ENST00000324262	human	ensembl	74_37	+1	known	missense	c.835	p.D279Y	0.005	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP2	HGNC	ENSG00000133313				160	0	0	89	5	5.31915
MBP	0	genome.wustl.edu	37	18	74692266	74692266	+	RNA	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	18	74692266	74692266	G	A	SNP	MBP	ENST00000578715	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	MBP	HGNC	ENSG00000197971				78	0	0	51	9	15
ATP9B	0	genome.wustl.edu	37	18	77096644	77096644	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	18	77096644	77096644	G	C	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	missense	c.2045	p.R682P	0.832	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				65	0	0	16	9	36
S1PR5	0	genome.wustl.edu	37	19	10625085	10625085	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	10625085	10625085	G	A	SNP	S1PR5	ENST00000333430	human	ensembl	74_37	-1	known	silent	c.603	p.F201	0.566	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_S1P_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_EDG8_S1P_rcpt,prints_S1P_rcpt,prints_GPCR_Rhodpsn	-	no_errors	S1PR5	HGNC	ENSG00000180739				29	0	0	15	4	21.0526
POLR2E	0	genome.wustl.edu	37	19	1093981	1093981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	1093981	1093981	G	A	SNP	POLR2E	ENST00000215587	human	ensembl	74_37	-1	known	missense	c.154	p.R52W	1.000	pfam_RNA_pol_Rpb5_N,superfamily_RNA_pol_Rpb5_N,pirsf_DNA_RNA_pol_RPB5_euk/virus	pfam_RNA_pol_subH/Rpb5_C,pfam_RNA_pol_Rpb5_N,superfamily_RNA_pol_Rpb5_N,superfamily_RNA_pol_subH/Rpb5_C,pirsf_DNA_RNA_pol_RPB5_euk/virus	-	no_errors	POLR2E	HGNC	ENSG00000099817				65	0	0	30	4	11.7647
NOTCH3	0	genome.wustl.edu	37	19	15281167	15281167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	15281167	15281167	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	missense	c.5089	p.V1697M	0.999	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				76	0	0	34	7	17.0732
USE1	0	genome.wustl.edu	37	19	17327075	17327075	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	17327075	17327075	A	G	SNP	USE1	ENST00000263897	human	ensembl	74_37	+1	known	missense	c.329	p.H110R	1.000	pfam_Vesicle_transport_protein_Use1	pfam_Vesicle_transport_protein_Use1	-	no_errors	USE1	HGNC	ENSG00000053501				144	0	0	64	5	7.24638
SLC5A5	0	genome.wustl.edu	37	19	17983472	17983472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	17983472	17983472	C	T	SNP	SLC5A5	ENST00000222248	human	ensembl	74_37	+1	known	missense	c.344	p.T115I	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641				49	0	0	24	3	11.1111
GATAD2A	0	genome.wustl.edu	37	19	19609527	19609527	+	Silent	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	19609527	19609527	A	G	SNP	GATAD2A	ENST00000358713	human	ensembl	74_37	+1	known	silent	c.1200	p.T400	0.067	NULL	pfam_Znf_GATA,pfscan_Znf_GATA	-	no_errors	GATAD2A	HGNC	ENSG00000167491				104	0	0	38	3	7.31707
TSSK6	0	genome.wustl.edu	37	19	19625866	19625866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	19625866	19625866	C	T	SNP	TSSK6	ENST00000360913	human	ensembl	74_37	-1	known	missense	c.371	p.R124H	0.997	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TSSK6	HGNC	ENSG00000178093				92	0	0	59	4	6.34921
ENSG00000267283	0	genome.wustl.edu	37	19	1989920	1989920	+	RNA	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	1989920	1989920	C	T	SNP	ENSG00000267283	ENST00000588480	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC005306.3	Clone_based_vega_gene	ENSG00000267283				22	0	0	13	8	38.0952
ZNF626	0	genome.wustl.edu	37	19	20807757	20807757	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	20807757	20807757	C	A	SNP	ZNF626	ENST00000601440	human	ensembl	74_37	-1	known	missense	c.926	p.G309V	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171				185	0	0	111	6	5.12821
PLEKHF1	0	genome.wustl.edu	37	19	30165559	30165559	+	Silent	SNP	G	G	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	30165559	30165559	G	C	SNP	PLEKHF1	ENST00000436066	human	ensembl	74_37	+1	known	silent	c.813	p.G271	0.000	NULL	pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_Znf_FYVE_PHD,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel	-	no_errors	PLEKHF1	HGNC	ENSG00000166289				26	0	0	10	4	28.5714
SIPA1L3	0	genome.wustl.edu	37	19	38572746	38572746	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	38572746	38572746	G	A	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.541	p.A181T	0.524	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				109	0	0	49	8	14.0351
GRIK5	0	genome.wustl.edu	37	19	42566769	42566769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	42566769	42566769	G	A	SNP	GRIK5	ENST00000301218	human	ensembl	74_37	-1	known	missense	c.379	p.R127C	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK5	HGNC	ENSG00000105737				231	0	0	90	9	9.09091
MEGF8	0	genome.wustl.edu	37	19	42862423	42862423	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	42862423	42862423	C	T	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	silent	c.5139	p.R1713	0.891	superfamily_Gal_Oxase/kelch_b-propeller	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				23	0	0	13	2	13.3333
SMG9	0	genome.wustl.edu	37	19	44237020	44237020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	44237020	44237020	C	T	SNP	SMG9	ENST00000270066	human	ensembl	74_37	-1	known	missense	c.1474	p.E492K	0.999	NULL	pfam_Smg8/Smg9,superfamily_P-loop_NTPase	-	no_errors	SMG9	HGNC	ENSG00000105771				136	1	0.729927	58	5	7.93651
TEAD2	0	genome.wustl.edu	37	19	49863201	49863201	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	49863201	49863201	C	T	SNP	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	silent	c.132	p.V44	1.000	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				166	0	0	73	11	13.0952
LRRC4B	0	genome.wustl.edu	37	19	51022587	51022587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	51022587	51022587	C	T	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.383	p.G128D	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				79	0	0	38	9	19.1489
ZNF350	0	genome.wustl.edu	37	19	52469108	52469108	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	52469108	52469108	G	A	SNP	ZNF350	ENST00000243644	human	ensembl	74_37	-1	known	nonsense	c.598	p.R200*	0.255	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF350	HGNC	ENSG00000256683				312	0	0	159	21	11.6667
ZNF415	0	genome.wustl.edu	37	19	53612518	53612518	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	53612518	53612518	C	T	SNP	ZNF415	ENST00000448501	human	ensembl	74_37	-1	known	silent	c.924	p.A308	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	-	no_errors	ZNF415	HGNC	ENSG00000170954				112	0	0	66	8	10.8108
TFPT	0	genome.wustl.edu	37	19	54611352	54611352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	54611352	54611352	G	A	SNP	TFPT	ENST00000391759	human	ensembl	74_37	-1	known	missense	c.623	p.P208L	0.994	NULL	NULL	-	no_errors	TFPT	HGNC	ENSG00000105619				152	0	0	62	6	8.82353
PEG3	0	genome.wustl.edu	37	19	57335031	57335031	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	57335031	57335031	G	A	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	silent	c.411	p.D137	0.054	smart_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				167	0	0	70	8	10.2564
ZIM3	0	genome.wustl.edu	37	19	57647341	57647341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	57647341	57647341	C	T	SNP	ZIM3	ENST00000269834	human	ensembl	74_37	-1	known	missense	c.364	p.G122R	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946				260	0	0	159	22	12.1547
ZNF324B	0	genome.wustl.edu	37	19	58967763	58967763	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	58967763	58967763	G	A	SNP	ZNF324B	ENST00000336614	human	ensembl	74_37	+1	known	silent	c.1452	p.T484	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324B	HGNC	ENSG00000249471				149	0	0	67	9	11.8421
C3	0	genome.wustl.edu	37	19	6707183	6707183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	6707183	6707183	C	T	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.2149	p.G717S	0.006	pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				73	0	0	32	6	15.7895
MYO1F	0	genome.wustl.edu	37	19	8620596	8620596	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	8620596	8620596	C	T	SNP	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	missense	c.88	p.E30K	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				99	0	0	53	11	17.1875
MUC16	0	genome.wustl.edu	37	19	9054251	9054251	+	Silent	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	9054251	9054251	C	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.31371	p.S10457	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				27	0	0	5	16	76.1905
GPR45	0	genome.wustl.edu	37	2	105859168	105859168	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	105859168	105859168	G	A	SNP	GPR45	ENST00000258456	human	ensembl	74_37	+1	known	missense	c.853	p.V285I	0.814	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR45	HGNC	ENSG00000135973				349	0	0	140	47	25.1337
C2orf40	0	genome.wustl.edu	37	2	106690499	106690499	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	106690499	106690499	G	A	SNP	C2orf40	ENST00000238044	human	ensembl	74_37	+1	known	silent	c.285	p.A95	0.785	NULL	NULL	-	no_errors	C2orf40	HGNC	ENSG00000119147				146	0	0	79	8	9.1954
FBLN7	0	genome.wustl.edu	37	2	112944983	112944983	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	112944983	112944983	C	T	SNP	FBLN7	ENST00000331203	human	ensembl	74_37	+1	known	missense	c.1220	p.T407M	0.964	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	FBLN7	HGNC	ENSG00000144152				176	0	0	116	8	6.45161
THSD7B	0	genome.wustl.edu	37	2	137990641	137990641	+	Silent	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	137990641	137990641	A	G	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	silent	c.2088	p.V696	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				60	0	0	29	5	14.7059
STAM2	0	genome.wustl.edu	37	2	152992113	152992113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	152992113	152992113	C	T	SNP	STAM2	ENST00000263904	human	ensembl	74_37	-1	known	missense	c.709	p.A237T	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_Ubiquitin-int_motif,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM2	HGNC	ENSG00000115145				117	0	0	104	6	5.45455
TTN	0	genome.wustl.edu	37	2	179398823	179398823	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	179398823	179398823	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.94815	p.G31605	0.094	pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				196	0	0	95	11	10.3774
TTN	0	genome.wustl.edu	37	2	179408275	179408275	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	179408275	179408275	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.88721	p.V29574A	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				35	0	0	30	4	11.7647
TTN	0	genome.wustl.edu	37	2	179417845	179417845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	179417845	179417845	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.82078	p.V27360I	1.000	pfam_Ig_I-set,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				87	0	0	62	4	6.06061
FSIP2	0	genome.wustl.edu	37	2	186678578	186678578	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	186678578	186678578	T	A	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.20401	p.F6801I	0.000	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				148	0	0	75	11	12.7907
OSR1	0	genome.wustl.edu	37	2	19552099	19552099	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	19552099	19552099	G	A	SNP	OSR1	ENST00000272223	human	ensembl	74_37	-1	known	silent	c.738	p.L246	0.889	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR1	HGNC	ENSG00000143867				174	0	0	100	6	5.66038
C2orf69	0	genome.wustl.edu	37	2	200790353	200790353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	200790353	200790353	G	A	SNP	C2orf69	ENST00000319974	human	ensembl	74_37	+1	known	missense	c.902	p.G301D	1.000	pfam_UPF0565	pfam_UPF0565	-	no_errors	C2orf69	HGNC	ENSG00000178074				103	0	0	63	5	7.35294
CPO	0	genome.wustl.edu	37	2	207820188	207820188	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	207820188	207820188	T	A	SNP	CPO	ENST00000272852	human	ensembl	74_37	+1	known	missense	c.167	p.I56N	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPO	HGNC	ENSG00000144410				115	0	0	79	9	10.2273
IRS1	0	genome.wustl.edu	37	2	227662669	227662669	+	Silent	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	227662669	227662669	A	G	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	silent	c.786	p.D262	0.780	smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				143	0	0	81	10	10.989
CHRND	0	genome.wustl.edu	37	2	233396134	233396134	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	233396134	233396134	G	A	SNP	CHRND	ENST00000258385	human	ensembl	74_37	+1	known	missense	c.893	p.R298H	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRND	HGNC	ENSG00000135902				158	0	0	63	15	19.2308
FARP2	0	genome.wustl.edu	37	2	242375921	242375921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	242375921	242375921	G	A	SNP	FARP2	ENST00000264042	human	ensembl	74_37	+1	known	missense	c.1126	p.V376I	0.000	pfam_FERM-adjacent	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FARP2	HGNC	ENSG00000006607				160	0	0	88	8	8.33333
SOCS5	0	genome.wustl.edu	37	2	46985797	46985797	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	46985797	46985797	A	G	SNP	SOCS5	ENST00000306503	human	ensembl	74_37	+1	known	missense	c.128	p.K43R	0.000	NULL	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS5	HGNC	ENSG00000171150				141	0	0	45	8	15.0943
VRK2	0	genome.wustl.edu	37	2	58366924	58366924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	58366924	58366924	C	T	SNP	VRK2	ENST00000340157	human	ensembl	74_37	+1	known	missense	c.980	p.T327I	0.693	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	VRK2	HGNC	ENSG00000028116				91	0	0	55	10	15.3846
DCTN1	0	genome.wustl.edu	37	2	74598237	74598237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	74598237	74598237	G	A	SNP	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	missense	c.712	p.R238W	1.000	NULL	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				638	0	0	325	24	6.87679
LRRTM1	0	genome.wustl.edu	37	2	80530368	80530368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	80530368	80530368	C	T	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	missense	c.577	p.G193R	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				160	0	0	85	8	8.60215
SNX5	0	genome.wustl.edu	37	20	17928170	17928170	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	17928170	17928170	G	A	SNP	SNX5	ENST00000377759	human	ensembl	74_37	-1	known	silent	c.1038	p.C346	1.000	pfam_Vps5_C,pirsf_Snx5_Snx6	pfam_Phox,pfam_Vps5_C,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX5	HGNC	ENSG00000089006				147	0	0	72	5	6.49351
SYNDIG1	0	genome.wustl.edu	37	20	24524112	24524112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	24524112	24524112	G	A	SNP	SYNDIG1	ENST00000376862	human	ensembl	74_37	+1	known	missense	c.379	p.E127K	1.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	SYNDIG1	HGNC	ENSG00000101463				201	0	0	106	12	10.1695
XKR7	0	genome.wustl.edu	37	20	30585189	30585189	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	30585189	30585189	G	T	SNP	XKR7	ENST00000562532	human	ensembl	74_37	+1	known	missense	c.1669	p.A557S	0.003	NULL	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000260903				118	0	0	55	10	15.3846
ZNF341	0	genome.wustl.edu	37	20	32344953	32344953	+	Splice_Site	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	32344953	32344953	G	T	SNP	ZNF341	ENST00000375200	human	ensembl	74_37	+1	known	splice_site	c.742-1	e6-1	1.000	-	-	-	no_errors	ZNF341	HGNC	ENSG00000131061				425	1	0.234742	211	14	6.22222
ACSS2	0	genome.wustl.edu	37	20	33509633	33509633	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	33509633	33509633	C	T	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	silent	c.1551	p.S517	0.993	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069				613	2	0.325203	273	35	11.3636
PROCR	0	genome.wustl.edu	37	20	33764082	33764082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	33764082	33764082	C	T	SNP	PROCR	ENST00000216968	human	ensembl	74_37	+1	known	missense	c.434	p.P145L	0.608	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	PROCR	HGNC	ENSG00000101000				172	0	0	94	11	10.4762
MMP24	0	genome.wustl.edu	37	20	33842535	33842535	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	33842535	33842535	G	A	SNP	MMP24	ENST00000246186	human	ensembl	74_37	+1	known	silent	c.795	p.T265	0.016	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP24	HGNC	ENSG00000125966				145	0	0	94	9	8.73786
R3HDML	0	genome.wustl.edu	37	20	42973989	42973989	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	42973989	42973989	G	A	SNP	R3HDML	ENST00000217043	human	ensembl	74_37	+1	known	silent	c.600	p.A200	0.023	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	R3HDML	HGNC	ENSG00000101074				221	0	0	109	7	6.03448
SLC23A2	0	genome.wustl.edu	37	20	4880333	4880333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	4880333	4880333	G	A	SNP	SLC23A2	ENST00000338244	human	ensembl	74_37	-1	known	missense	c.350	p.T117M	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057				235	0	0	134	14	9.45946
MCM8	0	genome.wustl.edu	37	20	5948171	5948171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	5948171	5948171	G	A	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	missense	c.965	p.S322N	1.000	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				153	0	0	43	43	50
HELZ2	0	genome.wustl.edu	37	20	62197020	62197020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	62197020	62197020	G	A	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.3155	p.T1052M	0.004	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				71	0	0	39	3	7.14286
UCKL1	0	genome.wustl.edu	37	20	62571599	62571599	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	20	62571599	62571599	C	T	SNP	UCKL1	ENST00000354216	human	ensembl	74_37	-1	known	missense	c.1471	p.V491M	0.987	NULL	pfam_PRK/URK,pfam_CPT,superfamily_P-loop_NTPase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC	ENSG00000198276				55	0	0	26	9	25.7143
UBE2G2	0	genome.wustl.edu	37	21	46191262	46191262	+	RNA	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	21	46191262	46191262	G	A	SNP	UBE2G2	ENST00000477954	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	UBE2G2	HGNC	ENSG00000184787				114	0	0	50	8	13.7931
CECR2	0	genome.wustl.edu	37	22	18028575	18028575	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	22	18028575	18028575	A	G	SNP	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	missense	c.3532	p.T1178A	0.996	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954				85	0	0	36	4	10
DGCR8	0	genome.wustl.edu	37	22	20077195	20077195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	22	20077195	20077195	G	A	SNP	DGCR8	ENST00000351989	human	ensembl	74_37	+1	known	missense	c.884	p.R295H	1.000	superfamily_WW_dom	pfam_dsRNA-bd_dom,superfamily_WW_dom,smart_WW_dom,smart_dsRNA-bd_dom,pfscan_WW_dom,pfscan_dsRNA-bd_dom	-	no_errors	DGCR8	HGNC	ENSG00000128191				143	0	0	86	8	8.51064
PI4KA	0	genome.wustl.edu	37	22	21075694	21075694	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	22	21075694	21075694	G	A	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	missense	c.5008	p.R1670W	0.998	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973				198	0	0	85	18	17.4757
AP1B1	0	genome.wustl.edu	37	22	29745311	29745311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	22	29745311	29745311	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	74_37	-1	known	missense	c.1333	p.R445W	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				141	0	0	77	7	8.33333
PATZ1	0	genome.wustl.edu	37	22	31741321	31741321	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	22	31741321	31741321	C	A	SNP	PATZ1	ENST00000266269	human	ensembl	74_37	-1	known	missense	c.268	p.A90S	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	PATZ1	HGNC	ENSG00000100105				72	0	0	33	3	8.33333
DMC1	0	genome.wustl.edu	37	22	38935386	38935386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	22	38935386	38935386	G	A	SNP	DMC1	ENST00000216024	human	ensembl	74_37	-1	known	missense	c.526	p.R176C	1.000	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,tigrfam_DMC1_rcmbase	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DMC1_rcmbase	-	no_errors	DMC1	HGNC	ENSG00000100206				127	0	0	57	6	9.52381
MGAT3	0	genome.wustl.edu	37	22	39884327	39884327	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	22	39884327	39884327	C	T	SNP	MGAT3	ENST00000341184	human	ensembl	74_37	+1	known	silent	c.975	p.D325	1.000	pfam_Glyco_trans_17	pfam_Glyco_trans_17	-	no_errors	MGAT3	HGNC	ENSG00000128268				223	0	0	146	11	7.00637
MCHR1	0	genome.wustl.edu	37	22	41075595	41075595	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	22	41075595	41075595	A	G	SNP	MCHR1	ENST00000249016	human	ensembl	74_37	+1	known	missense	c.146	p.Q49R	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH1_rcpt,prints_MCH_rcpt,prints_GPCR_Rhodpsn	-	no_errors	MCHR1	HGNC	ENSG00000128285				97	0	0	51	4	7.27273
EFCAB6-AS1	0	genome.wustl.edu	37	22	43930793	43930793	+	RNA	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	22	43930793	43930793	C	G	SNP	EFCAB6-AS1	ENST00000431327	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	EFCAB6-AS1	HGNC	ENSG00000223843				84	0	0	39	10	20.4082
EFCAB6	0	genome.wustl.edu	37	22	44022428	44022428	+	Silent	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	22	44022428	44022428	A	G	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	silent	c.2364	p.L788	0.000	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				124	0	0	40	14	25.9259
TOMM70A	0	genome.wustl.edu	37	3	100093959	100093959	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	100093959	100093959	T	A	SNP	TOMM70A	ENST00000284320	human	ensembl	74_37	-1	known	missense	c.1130	p.Y377F	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM70A	HGNC	ENSG00000154174				185	1	0.537634	110	8	6.77966
ZBTB20	0	genome.wustl.edu	37	3	114058128	114058128	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	114058128	114058128	G	A	SNP	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	silent	c.1950	p.N650	0.863	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				262	0	0	121	9	6.92308
SEMA5B	0	genome.wustl.edu	37	3	122632748	122632748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	122632748	122632748	G	A	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	missense	c.2251	p.R751C	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				139	0	0	66	7	9.58904
KALRN	0	genome.wustl.edu	37	3	124103819	124103819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	124103819	124103819	G	A	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.1892	p.R631H	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				135	0	0	73	7	8.75
FAM86JP	0	genome.wustl.edu	37	3	125643933	125643933	+	RNA	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	125643933	125643933	A	G	SNP	FAM86JP	ENST00000467239	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.593	-	-	-	no_errors	FAM86JP	HGNC	ENSG00000171084				170	0	0	86	5	5.49451
UROC1	0	genome.wustl.edu	37	3	126229550	126229550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	126229550	126229550	C	T	SNP	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	missense	c.214	p.G72R	1.000	NULL	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				67	0	0	37	4	9.7561
CPNE4	0	genome.wustl.edu	37	3	131442406	131442406	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	131442406	131442406	C	T	SNP	CPNE4	ENST00000502818	human	ensembl	74_37	-1	known	missense	c.298	p.D100N	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE4	HGNC	ENSG00000196353				338	0	0	141	13	8.44156
ZIC1	0	genome.wustl.edu	37	3	147128729	147128729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	147128729	147128729	C	T	SNP	ZIC1	ENST00000282928	human	ensembl	74_37	+1	known	missense	c.830	p.P277L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC1	HGNC	ENSG00000152977				161	0	0	111	7	5.9322
BCHE	0	genome.wustl.edu	37	3	165547539	165547539	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	165547539	165547539	C	A	SNP	BCHE	ENST00000264381	human	ensembl	74_37	-1	known	missense	c.1283	p.C428F	1.000	pfam_CarbesteraseB,prints_Cholinesterase	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200				177	0	0	106	27	20.3008
SERPINI2	0	genome.wustl.edu	37	3	167183292	167183292	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	167183292	167183292	C	A	SNP	SERPINI2	ENST00000264677	human	ensembl	74_37	-1	known	missense	c.648	p.M216I	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINI2	HGNC	ENSG00000114204				107	0	0	75	18	19.3548
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				85	0	0	58	4	6.45161
PIK3CA	0	genome.wustl.edu	37	3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	178936094	178936094	C	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1636	p.Q546K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				83	0	0	57	4	6.55738
VPS8	0	genome.wustl.edu	37	3	184573526	184573526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	184573526	184573526	G	A	SNP	VPS8	ENST00000287546	human	ensembl	74_37	+1	known	missense	c.1063	p.A355T	1.000	superfamily_Quinonprotein_ADH-like_supfam	superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931				243	0	0	187	23	10.9524
ATP13A5	0	genome.wustl.edu	37	3	193080199	193080199	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	193080199	193080199	C	T	SNP	ATP13A5	ENST00000342358	human	ensembl	74_37	-1	known	silent	c.507	p.L169	0.859	pfam_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A5	HGNC	ENSG00000187527				84	0	0	100	13	11.5044
UBXN7	0	genome.wustl.edu	37	3	196098766	196098766	+	Splice_Site	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	196098766	196098766	C	T	SNP	UBXN7	ENST00000296328	human	ensembl	74_37	-1	known	splice_site	c.615+1	e6+1	1.000	-	-	-	no_errors	UBXN7	HGNC	ENSG00000163960				185	0	0	107	12	10.084
RAB5A	0	genome.wustl.edu	37	3	20017628	20017628	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	20017628	20017628	C	T	SNP	RAB5A	ENST00000273047	human	ensembl	74_37	+1	known	silent	c.405	p.A135	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB5A	HGNC	ENSG00000144566				85	0	0	49	4	7.54717
CNTN4	0	genome.wustl.edu	37	3	2967352	2967352	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	2967352	2967352	T	C	SNP	CNTN4	ENST00000397461	human	ensembl	74_37	+1	known	missense	c.1247	p.V416A	0.053	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN4	HGNC	ENSG00000144619				216	0	0	101	12	10.6195
OSBPL10	0	genome.wustl.edu	37	3	31871662	31871662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	31871662	31871662	G	A	SNP	OSBPL10	ENST00000396556	human	ensembl	74_37	-1	known	missense	c.599	p.A200V	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645				96	0	0	46	3	6.12245
SUSD5	0	genome.wustl.edu	37	3	33195442	33195442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	33195442	33195442	G	A	SNP	SUSD5	ENST00000309558	human	ensembl	74_37	-1	known	missense	c.682	p.R228W	0.005	NULL	pfam_Link,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Link,pfscan_Link,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD5	HGNC	ENSG00000173705				70	0	0	32	5	13.5135
ZNF621	0	genome.wustl.edu	37	3	40574034	40574034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	40574034	40574034	C	T	SNP	ZNF621	ENST00000339296	human	ensembl	74_37	+1	known	missense	c.773	p.T258M	0.980	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF621	HGNC	ENSG00000172888				135	0	0	52	11	17.4603
SNRK	0	genome.wustl.edu	37	3	43389767	43389767	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	43389767	43389767	G	T	SNP	SNRK	ENST00000296088	human	ensembl	74_37	+1	known	missense	c.2016	p.L672F	0.198	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SNRK	HGNC	ENSG00000163788				146	1	0.680272	71	19	21.1111
C3orf84	0	genome.wustl.edu	37	3	49227333	49227333	+	RNA	SNP	A	A	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	49227333	49227333	A	C	SNP	C3orf84	ENST00000443990	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C3orf84	HGNC	ENSG00000236980				290	0	0	152	21	12.1387
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				258	0	0	71	37	34.2593
STAB1	0	genome.wustl.edu	37	3	52556204	52556204	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	52556204	52556204	C	T	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	silent	c.6423	p.R2141	0.403	smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				106	0	0	46	9	16.3636
PBRM1	0	genome.wustl.edu	37	3	52610695	52610695	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	52610695	52610695	G	A	SNP	PBRM1	ENST00000296302	human	ensembl	74_37	-1	known	nonsense	c.3553	p.R1185*	0.999	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_box_dom,superfamily_Bromodomain,superfamily_HMG_box_dom,smart_Bromodomain,smart_BAH_dom,smart_HMG_box_dom,pfscan_BAH_dom,pfscan_HMG_box_dom,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939				69	0	0	36	12	25
HESX1	0	genome.wustl.edu	37	3	57233925	57233925	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	57233925	57233925	C	A	SNP	HESX1	ENST00000295934	human	ensembl	74_37	-1	known	missense	c.22	p.G8C	0.275	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HESX1	HGNC	ENSG00000163666				144	0	0	72	4	5.26316
ABHD6	0	genome.wustl.edu	37	3	58260420	58260420	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	58260420	58260420	C	T	SNP	ABHD6	ENST00000295962	human	ensembl	74_37	+1	known	missense	c.559	p.R187W	0.961	pfam_AB_hydrolase_1,pfam_Ndr	pfam_AB_hydrolase_1,pfam_Ndr,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD6	HGNC	ENSG00000163686				125	0	0	88	11	11.1111
PROS1	0	genome.wustl.edu	37	3	93619668	93619668	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	93619668	93619668	A	G	SNP	PROS1	ENST00000394236	human	ensembl	74_37	-1	known	missense	c.707	p.L236P	0.030	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	PROS1	HGNC	ENSG00000184500				102	0	0	60	4	6.25
DDIT4L	0	genome.wustl.edu	37	4	101109029	101109029	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	101109029	101109029	G	A	SNP	DDIT4L	ENST00000273990	human	ensembl	74_37	-1	known	silent	c.387	p.S129	0.048	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358				97	0	0	55	6	9.83607
NDNF	0	genome.wustl.edu	37	4	121966924	121966924	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	121966924	121966924	G	A	SNP	NDNF	ENST00000379692	human	ensembl	74_37	-1	known	silent	c.69	p.P23	0.997	NULL	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	NDNF	HGNC	ENSG00000173376				100	0	0	63	5	7.35294
PCDH10	0	genome.wustl.edu	37	4	134073201	134073201	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	134073201	134073201	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.1906	p.G636R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				114	0	0	54	10	15.625
BOD1L1	0	genome.wustl.edu	37	4	13606646	13606646	+	Silent	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	13606646	13606646	T	C	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	silent	c.1878	p.E626	0.050	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				80	0	0	44	11	20
TLL1	0	genome.wustl.edu	37	4	166986858	166986858	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	166986858	166986858	G	T	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.2031	p.E677D	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				179	0	0	69	13	15.8537
FAM149A	0	genome.wustl.edu	37	4	187074826	187074826	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	187074826	187074826	C	T	SNP	FAM149A	ENST00000356371	human	ensembl	74_37	+1	known	silent	c.987	p.P329	0.000	pfam_DUF3719	pfam_DUF3719	-	no_errors	FAM149A	HGNC	ENSG00000109794				312	0	0	133	37	21.7647
ZFP42	0	genome.wustl.edu	37	4	188924094	188924094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	188924094	188924094	G	A	SNP	ZFP42	ENST00000326866	human	ensembl	74_37	+1	known	missense	c.133	p.A45T	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP42	HGNC	ENSG00000179059				113	0	0	59	7	10.6061
PPARGC1A	0	genome.wustl.edu	37	4	23803856	23803856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	23803856	23803856	C	T	SNP	PPARGC1A	ENST00000264867	human	ensembl	74_37	-1	known	missense	c.2132	p.R711Q	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819				153	0	0	81	11	11.9565
MSANTD1	0	genome.wustl.edu	37	4	3251104	3251104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	3251104	3251104	G	A	SNP	MSANTD1	ENST00000438480	human	ensembl	74_37	+1	known	missense	c.155	p.R52H	1.000	NULL	NULL	-	no_errors	MSANTD1	HGNC	ENSG00000188981				9	0	0	6	3	33.3333
GABRA4	0	genome.wustl.edu	37	4	46995377	46995377	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	46995377	46995377	C	T	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	missense	c.65	p.R22H	0.934	NULL	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				255	0	0	80	8	9.09091
ATP10D	0	genome.wustl.edu	37	4	47517498	47517498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	47517498	47517498	C	T	SNP	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	missense	c.296	p.A99V	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				100	0	0	61	10	14.0845
EVC2	0	genome.wustl.edu	37	4	5627539	5627539	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	5627539	5627539	C	A	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	missense	c.1983	p.K661N	1.000	pfam_Limbin	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				153	0	0	69	15	17.8571
EVC	0	genome.wustl.edu	37	4	5803748	5803748	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	5803748	5803748	G	A	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	silent	c.2376	p.A792	0.000	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				70	0	0	39	7	15.2174
MAN2B2	0	genome.wustl.edu	37	4	6606906	6606906	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	6606906	6606906	C	T	SNP	MAN2B2	ENST00000285599	human	ensembl	74_37	+1	known	missense	c.1664	p.P555L	0.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288				174	0	0	93	10	9.70874
YTHDC1	0	genome.wustl.edu	37	4	69184574	69184574	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	69184574	69184574	A	G	SNP	YTHDC1	ENST00000344157	human	ensembl	74_37	-1	known	missense	c.1691	p.L564S	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896				122	0	0	72	8	10
NPFFR2	0	genome.wustl.edu	37	4	72897896	72897896	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	72897896	72897896	C	A	SNP	NPFFR2	ENST00000308744	human	ensembl	74_37	+1	known	missense	c.278	p.A93D	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291				65	0	0	15	9	37.5
FRAS1	0	genome.wustl.edu	37	4	79461950	79461950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	79461950	79461950	C	T	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.11711	p.A3904V	0.996	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				51	0	0	29	5	14.7059
SLC10A6	0	genome.wustl.edu	37	4	87744985	87744985	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	87744985	87744985	G	A	SNP	SLC10A6	ENST00000273905	human	ensembl	74_37	-1	known	silent	c.990	p.C330	0.000	NULL	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A6	HGNC	ENSG00000145283				150	0	0	64	9	12.3288
ABCG2	0	genome.wustl.edu	37	4	89034556	89034556	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	89034556	89034556	T	C	SNP	ABCG2	ENST00000237612	human	ensembl	74_37	-1	known	missense	c.1093	p.K365E	0.000	NULL	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG2	HGNC	ENSG00000118777				288	0	0	169	27	13.7755
FBN2	0	genome.wustl.edu	37	5	127671202	127671202	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	127671202	127671202	G	C	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	nonsense	c.3792	p.Y1264*	0.970	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				236	0	0	184	13	6.59898
VDAC1	0	genome.wustl.edu	37	5	133311636	133311636	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	133311636	133311636	A	G	SNP	VDAC1	ENST00000265333	human	ensembl	74_37	-1	known	missense	c.628	p.W210R	1.000	pfam_Porin_Euk/Tom40	pfam_Porin_Euk/Tom40,prints_Porin_Euk	-	no_errors	VDAC1	HGNC	ENSG00000213585				236	0	0	179	10	5.29101
SMAD5	0	genome.wustl.edu	37	5	135513027	135513027	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	135513027	135513027	G	A	SNP	SMAD5	ENST00000545279	human	ensembl	74_37	+1	known	missense	c.1256	p.G419D	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD5	HGNC	ENSG00000113658				51	0	0	25	3	10.7143
DNAH5	0	genome.wustl.edu	37	5	13717570	13717570	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	13717570	13717570	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.12559	p.A4187T	0.683	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				66	0	0	46	5	9.80392
BRD8	0	genome.wustl.edu	37	5	137503737	137503737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	137503737	137503737	C	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.673	p.G225C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				165	0	0	76	51	40.1575
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				169	0	0	74	71	48.9655
CXXC5	0	genome.wustl.edu	37	5	139060342	139060342	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	139060342	139060342	G	A	SNP	CXXC5	ENST00000302517	human	ensembl	74_37	+1	known	silent	c.234	p.P78	0.282	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC5	HGNC	ENSG00000171604				187	1	0.531915	123	15	10.8696
NRG2	0	genome.wustl.edu	37	5	139231209	139231209	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	139231209	139231209	G	A	SNP	NRG2	ENST00000545385	human	ensembl	74_37	-1	known	silent	c.1758	p.R586	0.143	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom	-	no_errors	NRG2	HGNC	ENSG00000158458				133	0	0	64	14	17.9487
PCDHAC2	0	genome.wustl.edu	37	5	140346661	140346661	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	140346661	140346661	C	T	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	missense	c.310	p.R104C	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				75	0	0	27	3	10
PCDHB10	0	genome.wustl.edu	37	5	140574118	140574118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	140574118	140574118	G	A	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	+1	known	missense	c.1993	p.G665S	0.993	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324				115	1	0.862069	98	7	6.66667
PCDHB15	0	genome.wustl.edu	37	5	140627116	140627116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	140627116	140627116	C	T	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.1970	p.T657M	0.717	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				154	0	0	97	8	7.61905
PCDHGA2	0	genome.wustl.edu	37	5	140720916	140720916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	140720916	140720916	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	missense	c.2378	p.A793V	0.006	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				224	0	0	153	9	5.55556
PCDHGA12	0	genome.wustl.edu	37	5	140812130	140812130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	140812130	140812130	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.1804	p.A602T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				195	0	0	127	12	8.63309
PDE6A	0	genome.wustl.edu	37	5	149294523	149294523	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	149294523	149294523	C	A	SNP	PDE6A	ENST00000255266	human	ensembl	74_37	-1	known	missense	c.981	p.E327D	0.977	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915				121	0	0	91	7	7.14286
KIF4B	0	genome.wustl.edu	37	5	154396439	154396439	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	154396439	154396439	C	A	SNP	KIF4B	ENST00000435029	human	ensembl	74_37	+1	known	missense	c.3020	p.P1007H	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650				260	2	0.763359	129	7	5.14706
FAM71B	0	genome.wustl.edu	37	5	156589984	156589984	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	156589984	156589984	C	A	SNP	FAM71B	ENST00000302938	human	ensembl	74_37	-1	known	missense	c.1292	p.R431I	0.007	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613				185	0	0	103	8	7.20721
EBF1	0	genome.wustl.edu	37	5	158141123	158141123	+	Splice_Site	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	158141123	158141123	A	G	SNP	EBF1	ENST00000313708	human	ensembl	74_37	-1	known	splice_site	c.1191+2	e12+2	1.000	-	-	-	no_errors	EBF1	HGNC	ENSG00000164330				212	0	0	122	21	14.6853
MYO10	0	genome.wustl.edu	37	5	16701576	16701576	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	16701576	16701576	G	A	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	silent	c.2928	p.C976	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				56	0	0	47	4	7.84314
LCP2	0	genome.wustl.edu	37	5	169680150	169680150	+	Silent	SNP	A	A	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	169680150	169680150	A	C	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	silent	c.1218	p.P406	0.000	NULL	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462				32	0	0	13	4	23.5294
CPEB4	0	genome.wustl.edu	37	5	173317108	173317108	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	173317108	173317108	G	A	SNP	CPEB4	ENST00000265085	human	ensembl	74_37	+1	known	silent	c.372	p.S124	0.012	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742				150	0	0	74	12	13.9535
FTH1P10	0	genome.wustl.edu	37	5	17354467	17354467	+	RNA	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	17354467	17354467	G	A	SNP	FTH1P10	ENST00000401830	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FTH1P10	HGNC	ENSG00000223361				61	0	0	33	17	34
GRK6	0	genome.wustl.edu	37	5	176868758	176868758	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	176868758	176868758	C	T	SNP	GRK6	ENST00000528793	human	ensembl	74_37	+1	known	missense	c.1700	p.A567V	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK6	HGNC	ENSG00000198055				172	0	0	72	4	5.26316
NDUFS6	0	genome.wustl.edu	37	5	1814513	1814513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	1814513	1814513	C	T	SNP	NDUFS6	ENST00000274137	human	ensembl	74_37	+1	known	missense	c.247	p.R83W	0.323	pfam_Znf_CHCC,pirsf_NADH_Ub_cplx-1_Fe-S_6_mit	pfam_Znf_CHCC,pirsf_NADH_Ub_cplx-1_Fe-S_6_mit	-	no_errors	NDUFS6	HGNC	ENSG00000145494				156	0	0	80	23	22.3301
ADAMTS12	0	genome.wustl.edu	37	5	33751454	33751454	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	33751454	33751454	A	T	SNP	ADAMTS12	ENST00000515401	human	ensembl	74_37	-1	known	nonsense	c.689	p.L230*	0.001	NULL	pfam_Peptidase_M12B_N	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				73	0	0	53	5	8.62069
RANBP3L	0	genome.wustl.edu	37	5	36257585	36257585	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	36257585	36257585	G	A	SNP	RANBP3L	ENST00000296604	human	ensembl	74_37	-1	known	missense	c.743	p.P248L	0.002	NULL	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3L	HGNC	ENSG00000164188				116	0	0	40	15	27.2727
ADCY2	0	genome.wustl.edu	37	5	7626396	7626396	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	7626396	7626396	G	A	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.687	p.S229	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				125	0	0	70	22	23.913
CMYA5	0	genome.wustl.edu	37	5	79024982	79024982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	79024982	79024982	C	T	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.394	p.R132W	0.987	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				200	0	0	123	10	7.5188
CEP57L1	0	genome.wustl.edu	37	6	109466443	109466443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	109466443	109466443	C	T	SNP	CEP57L1	ENST00000359793	human	ensembl	74_37	+1	known	missense	c.19	p.H7Y	0.577	NULL	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57L1	HGNC	ENSG00000183137				244	0	0	168	14	7.69231
MICAL1	0	genome.wustl.edu	37	6	109771540	109771540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	109771540	109771540	C	T	SNP	MICAL1	ENST00000368952	human	ensembl	74_37	-1	known	missense	c.1211	p.R404H	0.672	superfamily_CH-domain	pfam_DUF3585,pfam_CH-domain,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL1	HGNC	ENSG00000135596				178	0	0	86	8	8.51064
HIVEP1	0	genome.wustl.edu	37	6	12164647	12164647	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	12164647	12164647	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.8110	p.D2704N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				97	0	0	51	7	12.069
RSPO3	0	genome.wustl.edu	37	6	127440347	127440347	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	127440347	127440347	C	T	SNP	RSPO3	ENST00000368317	human	ensembl	74_37	+1	known	nonsense	c.10	p.R4*	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO3	HGNC	ENSG00000146374				222	0	0	89	12	11.8812
TCF21	0	genome.wustl.edu	37	6	134210545	134210545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	134210545	134210545	G	A	SNP	TCF21	ENST00000237316	human	ensembl	74_37	+1	known	missense	c.10	p.G4S	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF21	HGNC	ENSG00000118526				169	0	0	84	8	8.69565
ALDH8A1	0	genome.wustl.edu	37	6	135239833	135239833	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	135239833	135239833	G	T	SNP	ALDH8A1	ENST00000265605	human	ensembl	74_37	-1	known	missense	c.1184	p.P395Q	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH8A1	HGNC	ENSG00000118514				158	0	0	96	11	10.2804
BCLAF1	0	genome.wustl.edu	37	6	136599130	136599130	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	136599130	136599130	A	G	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.889	p.S297P	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				115	0	0	73	4	5.19481
IPCEF1	0	genome.wustl.edu	37	6	154520863	154520863	+	Silent	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	154520863	154520863	A	G	SNP	IPCEF1	ENST00000367220	human	ensembl	74_37	-1	known	silent	c.849	p.S283	0.981	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	IPCEF1	HGNC	ENSG00000074706				155	0	0	94	15	13.7615
ARID1B	0	genome.wustl.edu	37	6	157222537	157222537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	157222537	157222537	G	A	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	missense	c.1765	p.V589M	0.998	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				94	0	0	26	10	27.7778
IGF2R	0	genome.wustl.edu	37	6	160468929	160468929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	160468929	160468929	G	A	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.2335	p.D779N	1.000	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				95	0	0	50	4	7.40741
LPA	0	genome.wustl.edu	37	6	161006078	161006078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	161006078	161006078	G	A	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	missense	c.4289	p.A1430V	0.946	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				290	0	0	187	12	6.03015
PARK2	0	genome.wustl.edu	37	6	161781145	161781145	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	161781145	161781145	G	A	SNP	PARK2	ENST00000366898	human	ensembl	74_37	-1	known	silent	c.1260	p.R420	0.947	pfam_Znf_C6HC,smart_Znf_C6HC,pirsf_Parkin	pfam_Ubiquitin_dom,pfam_Znf_C6HC,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,smart_Znf_C6HC,pirsf_Parkin,pfscan_Ubiquitin_supergroup,prints_Parkin,prints_Ubiquitin	-	no_errors	PARK2	HGNC	ENSG00000185345				291	0	0	137	13	8.66667
MLLT4	0	genome.wustl.edu	37	6	168316019	168316019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	168316019	168316019	C	T	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	missense	c.2450	p.A817V	1.000	pfam_Dil_domain,pfscan_Dilute	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				89	0	0	42	3	6.66667
BTN3A2	0	genome.wustl.edu	37	6	26370758	26370758	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	26370758	26370758	C	T	SNP	BTN3A2	ENST00000356386	human	ensembl	74_37	+1	known	silent	c.642	p.S214	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	BTN3A2	HGNC	ENSG00000186470				264	0	0	120	15	11.1111
BTN2A2	0	genome.wustl.edu	37	6	26388404	26388404	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	26388404	26388404	C	T	SNP	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	silent	c.606	p.D202	0.001	pfam_CD80_C2-set	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508				197	0	0	106	13	10.9244
HIST1H2BJ	0	genome.wustl.edu	37	6	27100525	27100525	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	27100525	27100525	G	A	SNP	HIST1H2BJ	ENST00000339812	human	ensembl	74_37	-1	known	missense	c.5	p.P2L	1.000	NULL	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BJ	HGNC	ENSG00000124635				152	0	0	54	27	33.3333
HIST1H1B	0	genome.wustl.edu	37	6	27834673	27834673	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	27834673	27834673	T	C	SNP	HIST1H1B	ENST00000331442	human	ensembl	74_37	-1	known	missense	c.635	p.K212R	1.000	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1B	HGNC	ENSG00000184357				65	0	0	30	7	18.9189
SERPINB6	0	genome.wustl.edu	37	6	2948552	2948552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	2948552	2948552	C	T	SNP	SERPINB6	ENST00000335686	human	ensembl	74_37	-1	known	missense	c.1111	p.G371S	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB6	HGNC	ENSG00000124570				99	0	0	67	5	6.94444
PRRC2A	0	genome.wustl.edu	37	6	31593818	31593818	+	Silent	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	31593818	31593818	C	G	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	silent	c.861	p.G287	0.997	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				105	1	0.943396	48	15	23.8095
USP49	0	genome.wustl.edu	37	6	41774530	41774530	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	41774530	41774530	C	T	SNP	USP49	ENST00000373009	human	ensembl	74_37	-1	known	silent	c.192	p.P64	0.819	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP49	HGNC	ENSG00000164663				261	1	0.381679	156	20	11.3636
CUL7	0	genome.wustl.edu	37	6	43013989	43013989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	43013989	43013989	C	T	SNP	CUL7	ENST00000535468	human	ensembl	74_37	-1	known	missense	c.2897	p.R966Q	0.942	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090				100	0	0	58	5	7.93651
CRISP1	0	genome.wustl.edu	37	6	49803156	49803156	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	49803156	49803156	G	T	SNP	CRISP1	ENST00000335847	human	ensembl	74_37	-1	known	missense	c.623	p.T208N	0.964	pfam_Cysteine_rich_secretory	pfam_Cysteine_rich_secretory,pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	CRISP1	HGNC	ENSG00000124812				144	0	0	96	7	6.79612
LMBRD1	0	genome.wustl.edu	37	6	70423555	70423555	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	70423555	70423555	G	A	SNP	LMBRD1	ENST00000370577	human	ensembl	74_37	-1	known	silent	c.897	p.G299	0.888	NULL	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216				136	0	0	71	5	6.57895
MDN1	0	genome.wustl.edu	37	6	90402780	90402780	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	90402780	90402780	G	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.9969	p.Y3323	0.989	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				76	0	0	29	3	9.375
ZAN	0	genome.wustl.edu	37	7	100348417	100348417	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	100348417	100348417	G	A	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	silent	c.1419	p.A473	0.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				47	0	0	30	3	9.09091
SLC26A4	0	genome.wustl.edu	37	7	107303837	107303837	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	107303837	107303837	C	T	SNP	SLC26A4	ENST00000265715	human	ensembl	74_37	+1	known	silent	c.261	p.D87	0.668	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137				141	0	0	110	24	17.9104
PLXNA4	0	genome.wustl.edu	37	7	131830026	131830026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	131830026	131830026	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.5077	p.D1693N	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				81	0	0	77	5	6.09756
OR2A5	0	genome.wustl.edu	37	7	143747978	143747978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	143747978	143747978	C	T	SNP	OR2A5	ENST00000408906	human	ensembl	74_37	+1	known	missense	c.484	p.L162F	0.565	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A5	HGNC	ENSG00000221836				403	0	0	257	30	10.453
OR2A25	0	genome.wustl.edu	37	7	143772113	143772113	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	143772113	143772113	G	T	SNP	OR2A25	ENST00000408898	human	ensembl	74_37	+1	known	missense	c.801	p.K267N	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A25	HGNC	ENSG00000221933				387	0	0	273	25	8.38926
GIMAP6	0	genome.wustl.edu	37	7	150325544	150325544	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	150325544	150325544	T	C	SNP	GIMAP6	ENST00000328902	human	ensembl	74_37	-1	known	missense	c.142	p.K48E	1.000	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP6	HGNC	ENSG00000133561				623	0	0	417	33	7.33333
ASIC3	0	genome.wustl.edu	37	7	150746310	150746310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	150746310	150746310	C	T	SNP	ASIC3	ENST00000297512	human	ensembl	74_37	+1	known	missense	c.338	p.A113V	0.032	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC3	HGNC	ENSG00000213199				84	0	0	77	5	6.09756
SOSTDC1	0	genome.wustl.edu	37	7	16502239	16502239	+	Silent	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	16502239	16502239	G	T	SNP	SOSTDC1	ENST00000307068	human	ensembl	74_37	-1	known	silent	c.555	p.A185	0.998	pfam_Sclerostin/SOSTDC1	pfam_Sclerostin/SOSTDC1,pfam_Cys_knot,pfam_DAN,pfscan_Cys_knot_C	-	no_errors	SOSTDC1	HGNC	ENSG00000171243				246	1	0.404858	119	47	28.3133
AGR3	0	genome.wustl.edu	37	7	16900207	16900207	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	16900207	16900207	T	C	SNP	AGR3	ENST00000310398	human	ensembl	74_37	-1	known	missense	c.368	p.D123G	1.000	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	AGR3	HGNC	ENSG00000173467				115	0	0	96	8	7.69231
SP4	0	genome.wustl.edu	37	7	21521594	21521594	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	21521594	21521594	T	C	SNP	SP4	ENST00000222584	human	ensembl	74_37	+1	known	missense	c.1960	p.C654R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866				184	0	0	125	11	8.08824
DNAH11	0	genome.wustl.edu	37	7	21779241	21779241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	21779241	21779241	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.7885	p.A2629T	0.445	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				121	0	0	66	14	17.5
DNAH11	0	genome.wustl.edu	37	7	21923928	21923928	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	21923928	21923928	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.12428	p.R4143H	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				99	0	0	69	6	8
OSBPL3	0	genome.wustl.edu	37	7	24901354	24901354	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	24901354	24901354	T	C	SNP	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	missense	c.905	p.H302R	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882				141	0	0	97	16	14.1593
SFRP4	0	genome.wustl.edu	37	7	37951870	37951870	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	37951870	37951870	G	A	SNP	SFRP4	ENST00000436072	human	ensembl	74_37	-1	known	silent	c.642	p.V214	0.880	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP4	HGNC	ENSG00000106483				96	0	0	77	31	28.7037
NPC1L1	0	genome.wustl.edu	37	7	44579712	44579712	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	44579712	44579712	T	A	SNP	NPC1L1	ENST00000289547	human	ensembl	74_37	-1	known	missense	c.284	p.Q95L	1.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520				93	0	0	51	5	8.92857
PKD1L1	0	genome.wustl.edu	37	7	47968815	47968815	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	47968815	47968815	T	C	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	missense	c.1046	p.H349R	0.873	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				184	1	0.540541	125	9	6.71642
ABCA13	0	genome.wustl.edu	37	7	48391962	48391962	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	48391962	48391962	C	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	nonsense	c.10566	p.Y3522*	0.915	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				54	0	0	41	6	12.766
USP42	0	genome.wustl.edu	37	7	6187480	6187480	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	6187480	6187480	C	T	SNP	USP42	ENST00000306177	human	ensembl	74_37	+1	known	missense	c.1343	p.A448V	0.001	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP42	HGNC	ENSG00000106346				214	0	0	128	7	5.18519
DAGLB	0	genome.wustl.edu	37	7	6485687	6485687	+	Silent	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	6485687	6485687	G	A	SNP	DAGLB	ENST00000297056	human	ensembl	74_37	-1	known	silent	c.144	p.D48	1.000	NULL	pfam_Lipase_3	-	no_errors	DAGLB	HGNC	ENSG00000164535				141	0	0	81	7	7.95455
WBSCR17	0	genome.wustl.edu	37	7	70800582	70800582	+	Silent	SNP	T	T	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	70800582	70800582	T	G	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	silent	c.285	p.G95	0.999	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				107	0	0	46	34	42.5
CLIP2	0	genome.wustl.edu	37	7	73771749	73771749	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	73771749	73771749	C	A	SNP	CLIP2	ENST00000223398	human	ensembl	74_37	+1	known	missense	c.1157	p.T386K	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665				59	0	0	15	16	51.6129
AKAP9	0	genome.wustl.edu	37	7	91694563	91694563	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	91694563	91694563	A	G	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.6032	p.E2011G	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				51	0	0	41	4	8.88889
CSMD3	0	genome.wustl.edu	37	8	113702268	113702268	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	8	113702268	113702268	C	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	nonsense	c.1984	p.E662*	1.000	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				199	0	0	145	17	10.4938
SLC45A4	0	genome.wustl.edu	37	8	142228927	142228927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	8	142228927	142228927	G	A	SNP	SLC45A4	ENST00000517878	human	ensembl	74_37	-1	known	missense	c.812	p.A271V	0.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567				177	0	0	102	14	12.069
PLEC	0	genome.wustl.edu	37	8	144990986	144990986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	8	144990986	144990986	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.13414	p.A4472T	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				125	0	0	80	8	9.09091
GNRH1	0	genome.wustl.edu	37	8	25280807	25280807	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	8	25280807	25280807	G	T	SNP	GNRH1	ENST00000276414	human	ensembl	74_37	-1	known	missense	c.40	p.L14M	0.021	NULL	pfam_GnRH,prints_Gonadoliberin_I_precursor	-	no_errors	GNRH1	HGNC	ENSG00000147437				141	1	0.704225	93	12	11.4286
DUSP26	0	genome.wustl.edu	37	8	33449592	33449592	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	8	33449592	33449592	C	T	SNP	DUSP26	ENST00000256261	human	ensembl	74_37	-1	known	missense	c.575	p.R192Q	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP	-	no_errors	DUSP26	HGNC	ENSG00000133878				81	0	0	68	6	8.10811
OPRK1	0	genome.wustl.edu	37	8	54163414	54163414	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	8	54163414	54163414	T	C	SNP	OPRK1	ENST00000265572	human	ensembl	74_37	-1	known	missense	c.184	p.I62V	1.000	prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OPRK1	HGNC	ENSG00000082556				70	0	0	33	4	10.8108
XKR4	0	genome.wustl.edu	37	8	56436682	56436682	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	8	56436682	56436682	C	T	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	nonsense	c.1849	p.R617*	0.997	NULL	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				143	0	0	108	7	6.08696
RPS20	0	genome.wustl.edu	37	8	56986648	56986648	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	8	56986648	56986648	G	T	SNP	RPS20	ENST00000009589	human	ensembl	74_37	-1	known	missense	c.74	p.T25K	1.000	pfam_Ribosomal_S10_dom,superfamily_Ribosomal_S10_dom,prints_Ribosomal_S10,tigrfam_Ribosomal_S10_euk/arc	pfam_Ribosomal_S10_dom,superfamily_Ribosomal_S10_dom,prints_Ribosomal_S10,tigrfam_Ribosomal_S10_euk/arc	-	no_errors	RPS20	HGNC	ENSG00000008988				177	1	0.561798	94	51	35.1724
SGK223	0	genome.wustl.edu	37	8	8176049	8176049	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	8	8176049	8176049	C	T	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	missense	c.3836	p.R1279Q	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				45	0	0	33	6	15.3846
NR4A3	0	genome.wustl.edu	37	9	102590482	102590482	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	102590482	102590482	C	T	SNP	NR4A3	ENST00000330847	human	ensembl	74_37	+1	known	missense	c.191	p.T64M	1.000	prints_Nuc_orph_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508				164	0	0	75	10	11.7647
NIPSNAP3B	0	genome.wustl.edu	37	9	107533147	107533147	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	107533147	107533147	G	T	SNP	NIPSNAP3B	ENST00000374762	human	ensembl	74_37	+1	known	missense	c.448	p.V150F	0.475	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	-	no_errors	NIPSNAP3B	HGNC	ENSG00000165028				154	0	0	66	16	19.5122
OR1B1	0	genome.wustl.edu	37	9	125391409	125391409	+	Silent	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	125391409	125391409	A	G	SNP	OR1B1	ENST00000304833	human	ensembl	74_37	-1	known	silent	c.406	p.L136	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1B1	HGNC	ENSG00000171484				81	0	0	31	5	13.8889
DENND1A	0	genome.wustl.edu	37	9	126146189	126146189	+	Silent	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	126146189	126146189	C	G	SNP	DENND1A	ENST00000394219	human	ensembl	74_37	-1	known	silent	c.1614	p.P538	0.071	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522				114	1	0.869565	50	12	19.3548
POMT1	0	genome.wustl.edu	37	9	134385511	134385511	+	RNA	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	134385511	134385511	G	A	SNP	POMT1	ENST00000462375	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POMT1	HGNC	ENSG00000130714				32	0	0	9	4	30.7692
GLT6D1	0	genome.wustl.edu	37	9	138518015	138518015	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	138518015	138518015	C	G	SNP	GLT6D1	ENST00000371763	human	ensembl	74_37	-1	known	missense	c.157	p.A53P	0.987	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GLT6D1	HGNC	ENSG00000204007				169	1	0.588235	69	17	19.7674
ANAPC2	0	genome.wustl.edu	37	9	140074684	140074684	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	140074684	140074684	C	A	SNP	ANAPC2	ENST00000323927	human	ensembl	74_37	-1	known	missense	c.1839	p.E613D	0.622	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_APC_su2_C,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	-	no_errors	ANAPC2	HGNC	ENSG00000176248				74	0	0	47	4	7.84314
FREM1	0	genome.wustl.edu	37	9	14859271	14859271	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	14859271	14859271	G	A	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.541	p.R181W	0.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				166	0	0	74	19	20.4301
MLLT3	0	genome.wustl.edu	37	9	20620722	20620722	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	20620722	20620722	T	C	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	missense	c.124	p.S42G	1.000	pfam_YEATS,pfscan_YEATS	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				202	0	0	135	9	6.25
TAF1L	0	genome.wustl.edu	37	9	32634323	32634323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	32634323	32634323	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.1255	p.E419K	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				409	0	0	228	25	9.88142
FRMPD1	0	genome.wustl.edu	37	9	37740286	37740286	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	37740286	37740286	C	T	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	silent	c.1761	p.S587	0.003	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				79	0	0	52	4	7.14286
NTRK2	0	genome.wustl.edu	37	9	87339221	87339221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	87339221	87339221	C	T	SNP	NTRK2	ENST00000277120	human	ensembl	74_37	+1	known	missense	c.803	p.A268V	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053				278	0	0	138	50	26.5957
NTRK2	0	genome.wustl.edu	37	9	87549188	87549188	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	87549188	87549188	A	C	SNP	NTRK2	ENST00000277120	human	ensembl	74_37	+1	known	missense	c.1745	p.K582T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053				80	0	0	54	6	10
BICD2	0	genome.wustl.edu	37	9	95491364	95491364	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	95491364	95491364	A	G	SNP	BICD2	ENST00000356884	human	ensembl	74_37	-1	known	missense	c.395	p.L132P	1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963				98	0	0	45	4	8.16327
PTCH1	0	genome.wustl.edu	37	9	98278952	98278952	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	98278952	98278952	C	T	SNP	PTCH1	ENST00000375274	human	ensembl	74_37	-1	known	missense	c.151	p.G51R	0.000	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				91	0	0	49	5	9.25926
HTATSF1	0	genome.wustl.edu	37	X	135581814	135581814	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	135581814	135581814	G	A	SNP	HTATSF1	ENST00000218364	human	ensembl	74_37	+1	known	missense	c.244	p.A82T	0.121	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241				326	0	0	165	24	12.6984
FMR1	0	genome.wustl.edu	37	X	147026475	147026475	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	147026475	147026475	G	A	SNP	FMR1	ENST00000370475	human	ensembl	74_37	+1	known	missense	c.1558	p.E520K	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081				32	0	0	19	4	17.3913
PNMA5	0	genome.wustl.edu	37	X	152159298	152159298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	152159298	152159298	C	T	SNP	PNMA5	ENST00000361887	human	ensembl	74_37	-1	known	missense	c.845	p.R282H	0.000	NULL	NULL	-	no_errors	PNMA5	HGNC	ENSG00000198883				146	0	0	75	4	5.06329
ATP2B3	0	genome.wustl.edu	37	X	152823642	152823642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	152823642	152823642	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.2506	p.V836I	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				211	0	0	78	36	31.5789
POLA1	0	genome.wustl.edu	37	X	24757524	24757524	+	Silent	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	24757524	24757524	C	A	SNP	POLA1	ENST00000379068	human	ensembl	74_37	+1	known	silent	c.2073	p.T691	0.996	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868				196	1	0.507614	87	13	13
DMD	0	genome.wustl.edu	37	X	31191669	31191669	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	31191669	31191669	G	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.10315	p.H3439N	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				116	0	0	43	8	15.6863
FAM47A	0	genome.wustl.edu	37	X	34149433	34149433	+	Silent	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	34149433	34149433	C	T	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	silent	c.963	p.P321	0.493	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				69	0	0	42	10	19.2308
PRKX	0	genome.wustl.edu	37	X	3573440	3573440	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	3573440	3573440	G	A	SNP	PRKX	ENST00000262848	human	ensembl	74_37	-1	known	missense	c.349	p.H117Y	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKX	HGNC	ENSG00000183943				63	0	0	47	4	7.84314
CDK16	0	genome.wustl.edu	37	X	47088011	47088011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	47088011	47088011	C	T	SNP	CDK16	ENST00000276052	human	ensembl	74_37	+1	known	missense	c.1643	p.A548V	0.965	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK16	HGNC	ENSG00000102225				149	0	0	83	7	7.77778
GPKOW	0	genome.wustl.edu	37	X	48972594	48972594	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	48972594	48972594	G	A	SNP	GPKOW	ENST00000156109	human	ensembl	74_37	-1	known	missense	c.997	p.R333W	1.000	NULL	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394				105	0	0	67	4	5.6338
MSN	0	genome.wustl.edu	37	X	64947739	64947739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	64947739	64947739	G	A	SNP	MSN	ENST00000360270	human	ensembl	74_37	+1	known	missense	c.160	p.G54S	1.000	pirsf_ERM,pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065				92	0	0	70	9	11.3924
MSN	0	genome.wustl.edu	37	X	64959699	64959699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	64959699	64959699	C	T	SNP	MSN	ENST00000360270	human	ensembl	74_37	+1	known	missense	c.1678	p.R560C	1.000	pirsf_ERM,pfam_ERM_C_dom,superfamily_Moesin_tail,prints_Ez/rad/moesin_like	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065				207	0	0	95	10	9.52381
HEPH	0	genome.wustl.edu	37	X	65476119	65476119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	65476119	65476119	C	T	SNP	HEPH	ENST00000519389	human	ensembl	74_37	+1	known	missense	c.3005	p.P1002L	0.010	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472				149	0	0	60	19	24.0506
P2RY4	0	genome.wustl.edu	37	X	69478801	69478801	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	69478801	69478801	C	G	SNP	P2RY4	ENST00000374519	human	ensembl	74_37	-1	known	missense	c.674	p.R225P	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y4_rcpt,prints_GPCR_Rhodpsn,prints_P2Y2_rcpt	-	no_errors	P2RY4	HGNC	ENSG00000186912				80	0	0	31	12	27.907
HDAC8	0	genome.wustl.edu	37	X	71792661	71792661	+	RNA	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	71792661	71792661	G	A	SNP	HDAC8	ENST00000478743	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.716	-	-	-	no_errors	HDAC8	HGNC	ENSG00000147099				36	0	0	12	6	33.3333
CDX4	0	genome.wustl.edu	37	X	72667186	72667186	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	72667186	72667186	G	T	SNP	CDX4	ENST00000373514	human	ensembl	74_37	+1	known	missense	c.97	p.G33W	0.010	pfam_Caudal_activation_dom	pfam_Caudal_activation_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX4	HGNC	ENSG00000131264				51	0	0	43	5	10.4167
MAGEE1	0	genome.wustl.edu	37	X	75650837	75650837	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	75650837	75650837	G	C	SNP	MAGEE1	ENST00000361470	human	ensembl	74_37	+1	known	missense	c.2514	p.L838F	0.238	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934				46	0	0	26	6	18.75
ATP7A	0	genome.wustl.edu	37	X	77245353	77245353	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	77245353	77245353	T	C	SNP	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	missense	c.1235	p.L412P	1.000	pfam_HeavyMe-assoc_HMA,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,tigrfam_HMA_Cu_ion-bd	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				186	1	0.534759	170	19	10.0529
P2RY10	0	genome.wustl.edu	37	X	78216864	78216864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	78216864	78216864	G	A	SNP	P2RY10	ENST00000171757	human	ensembl	74_37	+1	known	missense	c.847	p.A283T	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	P2RY10	HGNC	ENSG00000078589				394	1	0.253165	234	31	11.6981
TBX22	0	genome.wustl.edu	37	X	79279618	79279618	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	79279618	79279618	A	G	SNP	TBX22	ENST00000373294	human	ensembl	74_37	+1	known	missense	c.413	p.Y138C	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145				191	0	0	80	8	9.09091
BRWD3	0	genome.wustl.edu	37	X	79959053	79959053	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	79959053	79959053	C	A	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	nonsense	c.2761	p.E921*	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				36	0	0	18	5	21.7391
CPXCR1	0	genome.wustl.edu	37	X	88008424	88008424	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	88008424	88008424	T	A	SNP	CPXCR1	ENST00000276127	human	ensembl	74_37	+1	known	nonsense	c.9	p.Y3*	0.747	NULL	pfscan_Znf_C2H2	-	no_errors	CPXCR1	HGNC	ENSG00000147183				19	0	0	10	4	28.5714
TGIF2LX	0	genome.wustl.edu	37	X	89177431	89177431	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	89177431	89177431	G	A	SNP	TGIF2LX	ENST00000283891	human	ensembl	74_37	+1	known	missense	c.347	p.R116H	0.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF2LX	HGNC	ENSG00000153779				189	0	0	100	8	7.40741
ADAM30	0	genome.wustl.edu	37	1	120437094	120437095	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	120437094	120437095	-	T	INS	ADAM30	ENST00000369400	human	ensembl	74_37	-1	known	frame_shift_ins	c.1866_1865	p.N622fs	0.003:0.000	smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249				156	0	0	78	7	8.23529
ADAM15	0	genome.wustl.edu	37	1	155033916	155033916	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	155033916	155033916	C	-	DEL	ADAM15	ENST00000356955	human	ensembl	74_37	+1	known	frame_shift_del	c.2303	p.P770fs	0.020	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537				54	0	0	42	6	12.5
PKLR	0	genome.wustl.edu	37	1	155264957	155264957	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	155264957	155264957	C	-	DEL	PKLR	ENST00000342741	human	ensembl	74_37	-1	known	frame_shift_del	c.644	p.G215fs	1.000	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase-like_insert_dom,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627				152	0	0	73	16	17.9775
DOCK7	0	genome.wustl.edu	37	1	62941104	62941104	+	RNA	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	62941104	62941104	A	-	DEL	DOCK7	ENST00000467758	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.057	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641				34	0	0	22	4	15.3846
WDR78	0	genome.wustl.edu	37	1	67292679	67292680	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	1	67292679	67292680	-	A	INS	WDR78	ENST00000371026	human	ensembl	74_37	-1	known	frame_shift_ins	c.2163_2162	p.L721fs	1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763				272	0	0	130	15	10.3448
ADD3	0	genome.wustl.edu	37	10	111893350	111893350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	111893350	111893350	A	-	DEL	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.K701fs	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				238	1	0.41841	83	15	15.3061
DNA2	0	genome.wustl.edu	37	10	70182521	70182521	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	70182521	70182521	A	-	DEL	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	frame_shift_del	c.2593	p.S865fs	1.000	superfamily_P-loop_NTPase	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				64	0	0	31	5	13.8889
PTEN	0	genome.wustl.edu	37	10	89717770	89717770	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	10	89717770	89717770	A	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.795	p.K267fs	0.994	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				91	0	0	72	6	7.69231
KCNA4	0	genome.wustl.edu	37	11	30033563	30033563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	30033563	30033563	A	-	DEL	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	frame_shift_del	c.663	p.F221fs	0.902	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				156	0	0	75	11	12.7907
CTNND1	0	genome.wustl.edu	37	11	57577664	57577664	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	57577664	57577664	A	-	DEL	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	frame_shift_del	c.2519	p.E842fs	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561				135	0	0	48	6	11.1111
SLC15A3	0	genome.wustl.edu	37	11	60704808	60704810	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	60704808	60704810	GAA	-	DEL	SLC15A3	ENST00000227880	human	ensembl	74_37	-1	known	in_frame_del	c.1629_1627	p.F543in_frame_del	1.000:1.000:1.000	superfamily_MFS_dom_general_subst_transpt	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC15A3	HGNC	ENSG00000110446				163	0	0	74	6	7.5
SCARNA9	0	genome.wustl.edu	37	11	93454921	93454921	+	RNA	DEL	G	G	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	11	93454921	93454921	G	-	DEL	SCARNA9	ENST00000530422	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	SCARNA9	HGNC	ENSG00000254911				33	0	0	32	4	11.1111
VPS37B	0	genome.wustl.edu	37	12	123351892	123351892	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	123351892	123351892	G	-	DEL	VPS37B	ENST00000267202	human	ensembl	74_37	-1	known	frame_shift_del	c.629	p.P210fs	0.609	NULL	pfam_Mod_r	-	no_errors	VPS37B	HGNC	ENSG00000139722				29	0	0	20	6	23.0769
LINC00477	0	genome.wustl.edu	37	12	24736562	24736562	+	RNA	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	24736562	24736562	A	-	DEL	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.301	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				174	0	0	73	7	8.75
MYO1A	0	genome.wustl.edu	37	12	57422573	57422573	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	12	57422573	57422573	T	-	DEL	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	frame_shift_del	c.3098	p.K1033fs	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866				168	1	0.591716	101	13	11.4035
ARID4A	0	genome.wustl.edu	37	14	58831119	58831119	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	14	58831119	58831119	T	-	DEL	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	frame_shift_del	c.2312	p.F772fs	0.997	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219				139	0	0	74	6	7.5
SHF	0	genome.wustl.edu	37	15	45491037	45491039	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	45491037	45491039	TTC	-	DEL	SHF	ENST00000318390	human	ensembl	74_37	-1	known	in_frame_del	c.407_405	p.K136in_frame_del	0.000:0.000:0.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHF	HGNC	ENSG00000138606				34	0	0	22	2	8.33333
TRIP4	0	genome.wustl.edu	37	15	64686305	64686305	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	64686305	64686305	A	-	DEL	TRIP4	ENST00000261884	human	ensembl	74_37	+1	known	frame_shift_del	c.262	p.D90fs	0.948	NULL	pfam_ASCH_domain,pfam_Znf_C2HC5,superfamily_PUA-like_domain	-	no_errors	TRIP4	HGNC	ENSG00000103671				58	0	0	46	6	11.5385
CLK3	0	genome.wustl.edu	37	15	74918310	74918311	+	Splice_Site	INS	-	-	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	15	74918310	74918311	-	T	INS	CLK3	ENST00000395066	human	ensembl	74_37	+1	known	splice_site_ins	c.1261+1_1261+1	e7+1	1.000:1.000	-	-	-	no_errors	CLK3	HGNC	ENSG00000179335				154	0	0	62	19	23.4568
ABCC1	0	genome.wustl.edu	37	16	16101752	16101753	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	16101752	16101753	-	T	INS	ABCC1	ENST00000399408	human	ensembl	74_37	+1	known	frame_shift_ins	c.128_129	p.Y45fs	0.999:0.003	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222				175	0	0	94	9	8.73786
NAGPA	0	genome.wustl.edu	37	16	5083678	5083679	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	5083678	5083679	GC	-	DEL	NAGPA	ENST00000312251	human	ensembl	74_37	-1	known	frame_shift_del	c.138_137	p.R46fs	0.004:0.541	NULL	pfam_DUF2233,pfscan_EG-like_dom	-	no_errors	NAGPA	HGNC	ENSG00000103174				61	0	0	13	2	13.3333
ENSG00000250685	0	genome.wustl.edu	37	16	84228613	84228613	+	RNA	DEL	T	T	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	16	84228613	84228613	T	-	DEL	ENSG00000250685	ENST00000536986	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-486L19.2	Clone_based_vega_gene	ENSG00000250685				88	0	0	45	4	8.16327
FLOT2	0	genome.wustl.edu	37	17	27211272	27211272	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	27211272	27211272	C	-	DEL	FLOT2	ENST00000394908	human	ensembl	74_37	-1	known	frame_shift_del	c.193	p.V65fs	1.000	pfam_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	FLOT2	HGNC	ENSG00000132589				166	0	0	66	6	8.33333
XYLT2	0	genome.wustl.edu	37	17	48434433	48434434	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	48434433	48434434	-	T	INS	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_ins	c.1761_1762	p.L587fs	1.000:1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				88	0	0	32	4	11.1111
BPTF	0	genome.wustl.edu	37	17	65822234	65822236	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	65822234	65822236	GAG	-	DEL	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	in_frame_del	c.394_396	p.E135in_frame_del	1.000:1.000:0.941	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				20	0	0	12	2	14.2857
TBCD	0	genome.wustl.edu	37	17	80887103	80887103	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	17	80887103	80887103	C	-	DEL	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	frame_shift_del	c.2808	p.H938fs	0.239	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556				66	0	0	30	4	11.7647
FHOD3	0	genome.wustl.edu	37	18	34205516	34205516	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	18	34205516	34205516	C	-	DEL	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_del	c.1000	p.S336fs	0.999	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				82	0	0	65	6	8.4507
EPG5	0	genome.wustl.edu	37	18	43459143	43459143	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	18	43459143	43459143	A	-	DEL	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	frame_shift_del	c.5704	p.Y1902fs	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				194	0	0	91	10	9.90099
COL5A3	0	genome.wustl.edu	37	19	10112500	10112501	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	10112500	10112501	-	G	INS	COL5A3	ENST00000264828	human	ensembl	74_37	-1	known	frame_shift_ins	c.907_906	p.T302fs	0.001:0.001	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573				210	0	0	121	10	7.63359
ZNF587B	0	genome.wustl.edu	37	19	58353885	58353885	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	58353885	58353885	T	-	DEL	ZNF587B	ENST00000594901	human	ensembl	74_37	+1	novel	frame_shift_del	c.1843	p.F615fs	0.313	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587B	HGNC	ENSG00000269343				69	0	0	41	5	10.8696
ADAMTS10	0	genome.wustl.edu	37	19	8651552	8651552	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	19	8651552	8651552	G	-	DEL	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	frame_shift_del	c.2293	p.Q765fs	0.987	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				151	1	0.657895	74	11	12.9412
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				184	0	0	76	42	35.5932
SGOL2	0	genome.wustl.edu	37	2	201436992	201436992	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	201436992	201436992	A	-	DEL	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	frame_shift_del	c.1923	p.G644fs	0.002	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535				251	0	0	125	7	5.30303
FOSL2	0	genome.wustl.edu	37	2	28634855	28634860	+	In_Frame_Del	DEL	AGAAGG	AGAAGG	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	AGAAGG	AGAAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	28634855	28634860	AGAAGG	-	DEL	FOSL2	ENST00000264716	human	ensembl	74_37	+1	known	in_frame_del	c.521_526	p.EK178in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	pfam_bZIP,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSL2	HGNC	ENSG00000075426				111	0	0	69	7	9.21053
ZFP36L2	0	genome.wustl.edu	37	2	43452623	43452623	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	43452623	43452623	C	-	DEL	ZFP36L2	ENST00000282388	human	ensembl	74_37	-1	known	frame_shift_del	c.320	p.G107fs	1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518				38	0	0	9	3	25
MSH2	0	genome.wustl.edu	37	2	47630387	47630387	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	2	47630387	47630387	C	-	DEL	MSH2	ENST00000233146	human	ensembl	74_37	+1	known	frame_shift_del	c.57	p.F19fs	0.998	pfam_DNA_mismatch_repair_MutS-lik_N,pirsf_DNA_mismatch_repair_MSH2	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	-	no_errors	MSH2	HGNC	ENSG00000095002				23	0	0	4	2	33.3333
CELSR1	0	genome.wustl.edu	37	22	46931227	46931227	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	22	46931227	46931227	C	-	DEL	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.G614fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				69	0	0	38	4	9.52381
POLQ	0	genome.wustl.edu	37	3	121207489	121207489	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	121207489	121207489	A	-	DEL	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	frame_shift_del	c.4289	p.L1430fs	0.152	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				81	0	0	52	12	18.75
RBM6	0	genome.wustl.edu	37	3	50107922	50107922	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	3	50107922	50107922	A	-	DEL	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	frame_shift_del	c.3053	p.K1019fs	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				278	0	0	102	7	6.42202
TRAM1L1	0	genome.wustl.edu	37	4	118005517	118005517	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	118005517	118005517	T	-	DEL	TRAM1L1	ENST00000310754	human	ensembl	74_37	-1	known	frame_shift_del	c.1033	p.R345fs	1.000	pirsf_Translocation_assoc_membrane	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599				313	1	0.318471	151	22	12.7168
KLF3	0	genome.wustl.edu	37	4	38691454	38691454	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	4	38691454	38691454	C	-	DEL	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	frame_shift_del	c.649	p.L219fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				261	0	0	184	10	5.15464
SLCO6A1	0	genome.wustl.edu	37	5	101794149	101794149	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	101794149	101794149	A	-	DEL	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	frame_shift_del	c.1068	p.F356fs	0.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359				191	0	0	119	7	5.55556
CDH10	0	genome.wustl.edu	37	5	24492972	24492973	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	5	24492972	24492973	-	A	INS	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	frame_shift_ins	c.1578_1577	p.S527fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				269	0	0	232	23	9.01961
EPB41L2	0	genome.wustl.edu	37	6	131277325	131277326	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	131277325	131277326	-	T	INS	EPB41L2	ENST00000337057	human	ensembl	74_37	-1	known	frame_shift_ins	c.301_300	p.E100fs	0.988:0.994	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819				242	0	0	144	16	10
HSP90AB1	0	genome.wustl.edu	37	6	44219246	44219247	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	6	44219246	44219247	-	A	INS	HSP90AB1	ENST00000353801	human	ensembl	74_37	+1	known	frame_shift_ins	c.1215_1216	p.N406fs	0.992:1.000	pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90_fam	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384				41	0	0	19	5	20.8333
NOS3	0	genome.wustl.edu	37	7	150698398	150698398	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	150698398	150698398	G	-	DEL	NOS3	ENST00000297494	human	ensembl	74_37	+1	known	frame_shift_del	c.1313	p.G440fs	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS3	HGNC	ENSG00000164867				151	0	0	94	10	9.61538
GET4	0	genome.wustl.edu	37	7	931927	931927	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	7	931927	931927	A	-	DEL	GET4	ENST00000265857	human	ensembl	74_37	+1	known	frame_shift_del	c.618	p.N208fs	0.933	pfam_UPF0363	pfam_UPF0363	-	no_errors	GET4	HGNC	ENSG00000239857				336	0	0	187	11	5.55556
C9orf152	0	genome.wustl.edu	37	9	112963554	112963554	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	112963554	112963554	G	-	DEL	C9orf152	ENST00000400613	human	ensembl	74_37	-1	known	frame_shift_del	c.394	p.Q132fs	0.993	NULL	NULL	-	no_errors	C9orf152	HGNC	ENSG00000188959				300	0	0	170	10	5.55556
FOXD4	0	genome.wustl.edu	37	9	117070	117070	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	117070	117070	G	-	DEL	FOXD4	ENST00000382500	human	ensembl	74_37	-1	known	frame_shift_del	c.1050	p.C351fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4	HGNC	ENSG00000170122				336	0	0	150	9	5.66038
NUP214	0	genome.wustl.edu	37	9	134007993	134007993	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	134007993	134007993	A	-	DEL	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	frame_shift_del	c.674	p.V228fs	1.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				125	0	0	62	8	11.4286
SETX	0	genome.wustl.edu	37	9	135158547	135158548	+	RNA	INS	-	-	A			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	135158547	135158548	-	A	INS	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.028:0.010	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				15	0	0	12	6	33.3333
SETX	0	genome.wustl.edu	37	9	135158548	135158548	+	RNA	DEL	A	A	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	135158548	135158548	A	-	DEL	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				15	0	0	13	5	27.7778
RUSC2	0	genome.wustl.edu	37	9	35547974	35547974	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	9	35547974	35547974	C	-	DEL	RUSC2	ENST00000361226	human	ensembl	74_37	+1	known	frame_shift_del	c.1456	p.N488fs	1.000	NULL	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853				170	0	0	105	6	5.40541
BCORL1	0	genome.wustl.edu	37	X	129146962	129146963	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	129146962	129146963	-	G	INS	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	frame_shift_ins	c.214_215	p.A74fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				374	0	0	147	9	5.76923
ATP7A	0	genome.wustl.edu	37	X	77268376	77268376	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8284-01A-11D-2340-08	TCGA-BR-8284-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e07f553-454d-480d-8ae8-69c085d95ace	cb783f9c-9839-4d69-a4f5-56988bcb8b32	X	77268376	77268376	T	-	DEL	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	frame_shift_del	c.2173	p.F726fs	1.000	NULL	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				154	0	0	133	10	6.99301
