Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SLAMF9	0	genome.wustl.edu	37	1	159923305	159923305	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	1	159923305	159923305	G	C	SNP	SLAMF9	ENST00000368093	human	ensembl	74_37	-1	known	missense	c.185	p.A62G	0.182	pfam_Ig_V-set	pfam_Ig_V-set,pfscan_Ig-like_dom	-	no_errors	SLAMF9	HGNC	ENSG00000162723				129	0	0	115	12	9.44882
HMCN1	0	genome.wustl.edu	37	1	185976303	185976303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	1	185976303	185976303	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.4519	p.G1507R	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				98	0	0	137	25	15.4321
HMCN1	0	genome.wustl.edu	37	1	186147734	186147734	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	1	186147734	186147734	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.16130	p.P5377H	1.000	superfamily_Growth_fac_rcpt_N_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				343	0	0	359	58	13.9089
FAIM3	0	genome.wustl.edu	37	1	207085193	207085193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	1	207085193	207085193	C	T	SNP	FAIM3	ENST00000367091	human	ensembl	74_37	-1	known	missense	c.592	p.G198S	0.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	FAIM3	HGNC	ENSG00000162894				83	0	0	77	15	16.3043
OR2T12	0	genome.wustl.edu	37	1	248458297	248458297	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	1	248458297	248458297	T	G	SNP	OR2T12	ENST00000317996	human	ensembl	74_37	-1	known	missense	c.584	p.N195T	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T12	HGNC	ENSG00000177201				108	0	0	112	11	8.94309
TIE1	0	genome.wustl.edu	37	1	43777368	43777368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	1	43777368	43777368	C	T	SNP	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	missense	c.1360	p.R454W	0.353	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056				135	0	0	135	13	8.78378
SLC1A7	0	genome.wustl.edu	37	1	53580580	53580580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	1	53580580	53580580	G	A	SNP	SLC1A7	ENST00000371494	human	ensembl	74_37	-1	known	missense	c.281	p.A94V	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A7	HGNC	ENSG00000162383				74	0	0	57	7	10.9375
KCNAB2	0	genome.wustl.edu	37	1	6100663	6100663	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	1	6100663	6100663	G	A	SNP	KCNAB2	ENST00000164247	human	ensembl	74_37	+1	known	missense	c.35	p.R12Q	1.000	prints_K_chnl_volt-dep_bsu_KCNAB2	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB2,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB2	HGNC	ENSG00000069424				86	0	0	94	13	12.1495
RPF1	0	genome.wustl.edu	37	1	84961055	84961055	+	Splice_Site	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	1	84961055	84961055	G	A	SNP	RPF1	ENST00000370654	human	ensembl	74_37	+1	known	splice_site	c.617-1	e6-1	1.000	-	-	-	no_errors	RPF1	HGNC	ENSG00000117133				25	0	0	43	11	20.3704
PAX2	0	genome.wustl.edu	37	10	102509565	102509565	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	10	102509565	102509565	G	A	SNP	PAX2	ENST00000370296	human	ensembl	74_37	+1	known	missense	c.106	p.V36M	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX2	HGNC	ENSG00000075891				101	0	0	76	15	16.4835
GPR26	0	genome.wustl.edu	37	10	125434390	125434390	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	10	125434390	125434390	A	C	SNP	GPR26	ENST00000284674	human	ensembl	74_37	+1	known	missense	c.725	p.K242T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR26	HGNC	ENSG00000154478				59	0	0	75	7	8.53659
ZNF248	0	genome.wustl.edu	37	10	38121917	38121917	+	Silent	SNP	A	A	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	10	38121917	38121917	A	C	SNP	ZNF248	ENST00000357328	human	ensembl	74_37	-1	known	silent	c.366	p.T122	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105				56	0	0	92	17	15.5963
LRRTM3	0	genome.wustl.edu	37	10	68686999	68686999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	10	68686999	68686999	C	T	SNP	LRRTM3	ENST00000361320	human	ensembl	74_37	+1	known	missense	c.325	p.R109C	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739				120	0	0	216	55	20.2952
SYT7	0	genome.wustl.edu	37	11	61318865	61318865	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	11	61318865	61318865	T	G	SNP	SYT7	ENST00000263846	human	ensembl	74_37	-1	known	missense	c.206	p.K69T	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT7	HGNC	ENSG00000011347				163	0	0	141	12	7.84314
VPS51	0	genome.wustl.edu	37	11	64876215	64876215	+	Silent	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	11	64876215	64876215	C	T	SNP	VPS51	ENST00000279281	human	ensembl	74_37	+1	known	silent	c.1272	p.D424	0.992	NULL	pfam_COG8,pfam_Vacuolar_sorting-assoc_54,pfam_COG_su2_N,pfam_RZZ-complex_Zw10,superfamily_Cullin_repeat-like_dom	-	no_errors	VPS51	HGNC	ENSG00000149823				41	0	0	37	3	7.5
DLG2	0	genome.wustl.edu	37	11	83676442	83676442	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	11	83676442	83676442	C	A	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	missense	c.1126	p.V376L	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				109	0	0	212	18	7.82609
UTP20	0	genome.wustl.edu	37	12	101776959	101776959	+	Silent	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	12	101776959	101776959	G	A	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	silent	c.7797	p.A2599	0.000	NULL	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				55	0	0	80	9	10.1124
TAS2R13	0	genome.wustl.edu	37	12	11061014	11061014	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	12	11061014	11061014	A	C	SNP	TAS2R13	ENST00000390677	human	ensembl	74_37	-1	known	missense	c.884	p.V295G	0.019	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R13	HGNC	ENSG00000212128				81	0	0	113	17	13.0769
RAB35	0	genome.wustl.edu	37	12	120534926	120534926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	12	120534926	120534926	C	T	SNP	RAB35	ENST00000432953	human	ensembl	74_37	-1	known	missense	c.124	p.V42I	0.997	NULL	NULL	-	no_errors	RAB35	HGNC	ENSG00000111737				24	0	0	19	4	17.3913
DAZAP2	0	genome.wustl.edu	37	12	51636252	51636252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	12	51636252	51636252	G	A	SNP	DAZAP2	ENST00000549555	human	ensembl	74_37	+1	known	missense	c.440	p.G147D	0.999	NULL	pfam_DAZ_assoc-2	-	no_errors	DAZAP2	HGNC	ENSG00000183283				173	0	0	146	32	17.9775
MLF2	0	genome.wustl.edu	37	12	6858088	6858088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	12	6858088	6858088	C	T	SNP	MLF2	ENST00000203630	human	ensembl	74_37	-1	known	missense	c.620	p.R207H	0.999	NULL	pfam_Myeloid_leukemia_factor	-	no_errors	MLF2	HGNC	ENSG00000089693				33	0	0	33	3	8.33333
UPF3A	0	genome.wustl.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	13	115047559	115047559	C	T	SNP	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	silent	c.271	p.L91	1.000	pfam_Nonsense_mediated_decay_UPF3	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				15	0	0	16	4	20
FNDC3A	0	genome.wustl.edu	37	13	49777299	49777299	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	13	49777299	49777299	A	G	SNP	FNDC3A	ENST00000492622	human	ensembl	74_37	+1	known	missense	c.3161	p.K1054R	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531				34	0	0	55	15	21.4286
CEP170B	0	genome.wustl.edu	37	14	105353089	105353089	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	14	105353089	105353089	T	G	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	missense	c.2516	p.V839G	0.094	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814				100	0	0	100	9	8.25688
JAG2	0	genome.wustl.edu	37	14	105613026	105613026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	14	105613026	105613026	C	T	SNP	JAG2	ENST00000331782	human	ensembl	74_37	-1	known	missense	c.2515	p.G839R	1.000	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	JAG2	HGNC	ENSG00000184916				46	0	0	60	9	13.0435
CTSG	0	genome.wustl.edu	37	14	25043976	25043976	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	14	25043976	25043976	G	A	SNP	CTSG	ENST00000216336	human	ensembl	74_37	-1	known	missense	c.244	p.R82W	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CTSG	HGNC	ENSG00000100448				117	0	0	144	16	10
DNM1P47	0	genome.wustl.edu	37	15	102304883	102304883	+	RNA	SNP	C	C	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	15	102304883	102304883	C	G	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				31	0	0	35	4	10.2564
SCAMP5	0	genome.wustl.edu	37	15	75310759	75310759	+	Silent	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	15	75310759	75310759	C	T	SNP	SCAMP5	ENST00000562212	human	ensembl	74_37	+1	known	silent	c.420	p.S140	0.958	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP5	HGNC	ENSG00000198794				201	0	0	251	42	14.3345
ISL2	0	genome.wustl.edu	37	15	76629257	76629257	+	Silent	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	15	76629257	76629257	G	A	SNP	ISL2	ENST00000290759	human	ensembl	74_37	+1	known	silent	c.33	p.L11	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	ISL2	HGNC	ENSG00000159556				337	0	0	424	45	9.59488
ADAMTS7	0	genome.wustl.edu	37	15	79051843	79051843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	15	79051843	79051843	G	A	SNP	ADAMTS7	ENST00000388820	human	ensembl	74_37	-1	known	missense	c.4981	p.R1661C	0.993	pfscan_PLAC	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378				22	0	0	33	3	8.33333
OTOA	0	genome.wustl.edu	37	16	21693073	21693073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	16	21693073	21693073	C	T	SNP	OTOA	ENST00000286149	human	ensembl	74_37	+1	known	missense	c.194	p.T65M	0.958	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719				77	0	0	73	8	9.87654
PLK1	0	genome.wustl.edu	37	16	23700042	23700042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	16	23700042	23700042	G	A	SNP	PLK1	ENST00000300093	human	ensembl	74_37	+1	known	missense	c.1246	p.D416N	1.000	NULL	pfam_Prot_kinase_dom,pfam_POLO_box_duplicated_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK1	HGNC	ENSG00000166851				138	0	0	134	19	12.4183
RRN3P2	0	genome.wustl.edu	37	16	29110458	29110458	+	RNA	SNP	T	T	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	16	29110458	29110458	T	C	SNP	RRN3P2	ENST00000427965	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	RRN3P2	HGNC	ENSG00000103472				47	0	0	68	4	5.55556
TOX3	0	genome.wustl.edu	37	16	52473872	52473872	+	Silent	SNP	A	A	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	16	52473872	52473872	A	G	SNP	TOX3	ENST00000219746	human	ensembl	74_37	-1	known	silent	c.996	p.A332	0.723	superfamily_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX3	HGNC	ENSG00000103460				87	0	0	70	11	13.5802
STUB1	0	genome.wustl.edu	37	16	731247	731247	+	Silent	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	16	731247	731247	C	T	SNP	STUB1	ENST00000219548	human	ensembl	74_37	+1	known	silent	c.255	p.R85	0.850	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_Ubox_domain,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ubox_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STUB1	HGNC	ENSG00000103266				47	0	0	31	5	13.8889
PKD1L2	0	genome.wustl.edu	37	16	81134713	81134713	+	RNA	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	16	81134713	81134713	G	A	SNP	PKD1L2	ENST00000534142	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	PKD1L2	HGNC	ENSG00000166473				103	0	0	93	14	13.0841
MYH2	0	genome.wustl.edu	37	17	10432167	10432167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	17	10432167	10432167	G	A	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.3584	p.A1195V	0.998	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				177	1	0.561798	248	40	13.8889
TAF15	0	genome.wustl.edu	37	17	34173908	34173908	+	Splice_Site	SNP	A	A	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	17	34173908	34173908	A	T	SNP	TAF15	ENST00000588240	human	ensembl	74_37	+1	known	splice_site	c.1740-2	e16-2	1.000	-	-	-	no_errors	TAF15	HGNC	ENSG00000172660				64	0	0	85	18	17.4757
ALOXE3	0	genome.wustl.edu	37	17	8018980	8018980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	17	8018980	8018980	G	A	SNP	ALOXE3	ENST00000318227	human	ensembl	74_37	-1	known	missense	c.775	p.P259S	1.000	superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148				100	0	0	104	7	6.30631
ASXL3	0	genome.wustl.edu	37	18	31322975	31322975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	18	31322975	31322975	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.3163	p.A1055T	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				42	0	0	36	9	20
MC4R	0	genome.wustl.edu	37	18	58038852	58038852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	18	58038852	58038852	G	A	SNP	MC4R	ENST00000299766	human	ensembl	74_37	-1	known	missense	c.731	p.A244V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_rcpt_4,prints_GPCR_Rhodpsn,prints_Melancort_rcpt,prints_Cnbnoid_rcpt	-	no_errors	MC4R	HGNC	ENSG00000166603				88	0	0	113	12	9.6
ZCCHC2	0	genome.wustl.edu	37	18	60241908	60241908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	18	60241908	60241908	C	T	SNP	ZCCHC2	ENST00000269499	human	ensembl	74_37	+1	known	missense	c.2594	p.T865M	1.000	NULL	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664				163	1	0.609756	170	30	15
SERPINB3	0	genome.wustl.edu	37	18	61326660	61326660	+	Silent	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	18	61326660	61326660	G	A	SNP	SERPINB3	ENST00000283752	human	ensembl	74_37	-1	known	silent	c.324	p.F108	0.050	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB3	HGNC	ENSG00000057149				113	0	0	208	20	8.77193
ZNF236	0	genome.wustl.edu	37	18	74627680	74627680	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	18	74627680	74627680	C	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.3133	p.H1045N	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				114	1	0.869565	106	15	12.3967
HMHA1	0	genome.wustl.edu	37	19	1073169	1073169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	19	1073169	1073169	C	T	SNP	HMHA1	ENST00000313093	human	ensembl	74_37	+1	known	missense	c.443	p.P148L	0.992	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448				204	0	0	165	26	13.6126
ZNF568	0	genome.wustl.edu	37	19	37440540	37440540	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	19	37440540	37440540	T	G	SNP	ZNF568	ENST00000333987	human	ensembl	74_37	+1	known	missense	c.485	p.F162C	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453				70	0	0	101	21	17.2131
PRX	0	genome.wustl.edu	37	19	40899953	40899953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	19	40899953	40899953	G	A	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	missense	c.4306	p.R1436W	0.995	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227				110	0	0	109	11	9.16667
NLRP4	0	genome.wustl.edu	37	19	56392864	56392864	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	19	56392864	56392864	A	G	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	missense	c.2896	p.T966A	0.175	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				34	0	0	59	5	7.8125
ZNF787	0	genome.wustl.edu	37	19	56599506	56599506	+	Silent	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	19	56599506	56599506	C	T	SNP	ZNF787	ENST00000270459	human	ensembl	74_37	-1	known	silent	c.1035	p.S345	0.033	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF787	HGNC	ENSG00000142409				28	0	0	27	6	18.1818
ZNF446	0	genome.wustl.edu	37	19	58991586	58991586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	19	58991586	58991586	G	A	SNP	ZNF446	ENST00000335841	human	ensembl	74_37	+1	putative	missense	c.761	p.R254H	0.001	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF446	HGNC	ENSG00000083838				19	0	0	30	6	16.6667
RALB	0	genome.wustl.edu	37	2	121036307	121036307	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	2	121036307	121036307	G	A	SNP	RALB	ENST00000474855	human	ensembl	74_37	+1	known	missense	c.133	p.G45R	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RALB	HGNC	ENSG00000144118				77	0	0	65	11	14.4737
LRP2	0	genome.wustl.edu	37	2	170038826	170038826	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	2	170038826	170038826	C	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.9849	p.K3283N	0.905	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				121	0	0	160	20	11.1111
HOXD10	0	genome.wustl.edu	37	2	176981590	176981590	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	2	176981590	176981590	C	A	SNP	HOXD10	ENST00000249501	human	ensembl	74_37	+1	known	missense	c.29	p.A10D	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD10	HGNC	ENSG00000128710				150	1	0.662252	177	26	12.8079
TTN	0	genome.wustl.edu	37	2	179455043	179455043	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	2	179455043	179455043	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.53705	p.I17902T	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				104	0	0	145	29	16.6667
CASP8	0	genome.wustl.edu	37	2	202150039	202150039	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	2	202150039	202150039	C	T	SNP	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	nonsense	c.1480	p.R494*	0.956	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012				105	0	0	121	18	12.9496
RQCD1	0	genome.wustl.edu	37	2	219458966	219458966	+	Silent	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	2	219458966	219458966	C	T	SNP	RQCD1	ENST00000509807	human	ensembl	74_37	+1	known	silent	c.963	p.T321	0.201	NULL	pfam_Rcd1,superfamily_ARM-type_fold	-	no_errors	RQCD1	HGNC	ENSG00000144580				40	0	0	25	11	30.5556
FAM161A	0	genome.wustl.edu	37	2	62066680	62066680	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	2	62066680	62066680	G	A	SNP	FAM161A	ENST00000405894	human	ensembl	74_37	-1	known	missense	c.1459	p.R487C	0.998	pfam_UPF0564	pfam_UPF0564	-	no_errors	FAM161A	HGNC	ENSG00000170264				78	0	0	74	21	22.1053
AFTPH	0	genome.wustl.edu	37	2	64778716	64778716	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	2	64778716	64778716	A	C	SNP	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	missense	c.108	p.E36D	1.000	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				165	0	0	245	38	13.4276
FRG1B	0	genome.wustl.edu	37	20	29625934	29625934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	20	29625934	29625934	C	T	SNP	FRG1B	ENST00000278882	human	ensembl	74_37	+1	known	missense	c.178	p.H60Y	1.000	pfam_FRG1,superfamily_Actin_cross-linking	pfam_FRG1,superfamily_Actin_cross-linking	-	no_errors	FRG1B	HGNC	ENSG00000149531				112	1	0.884956	213	15	6.57895
HCK	0	genome.wustl.edu	37	20	30686878	30686878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	20	30686878	30686878	G	A	SNP	HCK	ENST00000375852	human	ensembl	74_37	+1	known	missense	c.1318	p.V440I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	HCK	HGNC	ENSG00000101336				276	0	0	356	41	10.3275
ARFGEF2	0	genome.wustl.edu	37	20	47645175	47645175	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	20	47645175	47645175	C	T	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.5033	p.S1678F	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				48	0	0	62	7	10.1449
C20orf195	0	genome.wustl.edu	37	20	62187047	62187047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	20	62187047	62187047	G	A	SNP	C20orf195	ENST00000370097	human	ensembl	74_37	+1	known	missense	c.31	p.D11N	0.228	NULL	superfamily_Fibronectin_type3	-	no_errors	C20orf195	HGNC	ENSG00000125531				54	0	0	37	6	13.9535
BMS1P20	0	genome.wustl.edu	37	22	22663087	22663087	+	RNA	SNP	A	A	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	22	22663087	22663087	A	G	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				32	0	0	53	7	11.6667
RASD2	0	genome.wustl.edu	37	22	35942983	35942983	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	22	35942983	35942983	C	T	SNP	RASD2	ENST00000216127	human	ensembl	74_37	+1	known	missense	c.127	p.R43C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASD2	HGNC	ENSG00000100302				39	0	0	40	10	20
TCF20	0	genome.wustl.edu	37	22	42610498	42610498	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	22	42610498	42610498	A	T	SNP	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	missense	c.814	p.Y272N	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				175	0	0	236	34	12.5926
DENND6B	0	genome.wustl.edu	37	22	50752640	50752640	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	22	50752640	50752640	C	A	SNP	DENND6B	ENST00000413817	human	ensembl	74_37	-1	known	missense	c.1134	p.K378N	0.997	pfam_Afi1_N	pfam_Afi1_N,pfam_DENN_dom,pfam_ABL9/DENND6_dom	-	no_errors	DENND6B	HGNC	ENSG00000205593				55	0	0	32	5	13.5135
CIDECP	0	genome.wustl.edu	37	3	10065217	10065217	+	RNA	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	3	10065217	10065217	G	A	SNP	CIDECP	ENST00000335507	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CIDECP	HGNC	ENSG00000186162				41	0	0	34	7	17.0732
SLC6A1	0	genome.wustl.edu	37	3	11078556	11078556	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	3	11078556	11078556	A	C	SNP	SLC6A1	ENST00000287766	human	ensembl	74_37	+1	known	missense	c.1704	p.Q568H	1.000	NULL	pfam_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT1,pfscan_Na/ntran_symport	-	no_errors	SLC6A1	HGNC	ENSG00000157103				97	0	0	111	14	11.2
TMEM108	0	genome.wustl.edu	37	3	132948168	132948168	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	3	132948168	132948168	T	G	SNP	TMEM108	ENST00000321871	human	ensembl	74_37	+1	known	missense	c.13	p.L5V	1.000	NULL	NULL	-	no_errors	TMEM108	HGNC	ENSG00000144868				72	0	0	115	18	13.5338
PIK3CB	0	genome.wustl.edu	37	3	138426123	138426123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	3	138426123	138426123	C	T	SNP	PIK3CB	ENST00000289153	human	ensembl	74_37	-1	known	missense	c.1408	p.E470K	1.000	pfam_PI3K_C2_dom,superfamily_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382				19	0	0	47	9	16.0714
IGSF10	0	genome.wustl.edu	37	3	151165563	151165563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	3	151165563	151165563	G	A	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.2206	p.R736C	0.001	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				61	0	0	73	9	10.9756
VPS8	0	genome.wustl.edu	37	3	184675267	184675267	+	Silent	SNP	T	T	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	3	184675267	184675267	T	C	SNP	VPS8	ENST00000287546	human	ensembl	74_37	+1	known	silent	c.3141	p.T1047	0.001	superfamily_Quinonprotein_ADH-like_supfam	superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931				23	0	0	32	5	13.5135
SCN10A	0	genome.wustl.edu	37	3	38753882	38753882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	3	38753882	38753882	C	T	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.3859	p.V1287I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				202	0	0	206	26	11.2069
NKTR	0	genome.wustl.edu	37	3	42679964	42679964	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	3	42679964	42679964	G	T	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	missense	c.2768	p.S923I	0.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				68	0	0	77	13	14.4444
BOD1L1	0	genome.wustl.edu	37	4	13617045	13617045	+	Silent	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	4	13617045	13617045	C	T	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	silent	c.450	p.Q150	1.000	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				131	0	0	160	29	15.3439
HHIP	0	genome.wustl.edu	37	4	145568031	145568031	+	Silent	SNP	G	G	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	4	145568031	145568031	G	T	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	silent	c.204	p.L68	0.997	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161				77	0	0	78	9	10.3448
SLIT2	0	genome.wustl.edu	37	4	20555436	20555436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	4	20555436	20555436	G	A	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.2570	p.G857E	1.000	NULL	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				62	0	0	115	20	14.8148
GABRB1	0	genome.wustl.edu	37	4	47427730	47427730	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	4	47427730	47427730	A	C	SNP	GABRB1	ENST00000295454	human	ensembl	74_37	+1	known	missense	c.1120	p.I374L	0.623	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288				171	0	0	158	24	13.1868
FRYL	0	genome.wustl.edu	37	4	48636414	48636414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	4	48636414	48636414	G	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.14	p.T5M	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				78	0	0	113	15	11.7188
UGT2A1	0	genome.wustl.edu	37	4	70513344	70513344	+	Silent	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	4	70513344	70513344	G	A	SNP	UGT2A1	ENST00000503640	human	ensembl	74_37	-1	known	silent	c.19	p.L7	0.006	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A1	HGNC	ENSG00000173610				24	0	0	32	13	28.8889
PCDHA12	0	genome.wustl.edu	37	5	140255189	140255189	+	Silent	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	5	140255189	140255189	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	silent	c.132	p.F44	0.206	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				151	0	0	161	21	11.5385
PCDHGB7	0	genome.wustl.edu	37	5	140797832	140797832	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	5	140797832	140797832	G	A	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	missense	c.406	p.D136N	0.002	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122				115	0	0	134	27	16.7702
PCDH1	0	genome.wustl.edu	37	5	141244950	141244950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	5	141244950	141244950	C	T	SNP	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	missense	c.946	p.E316K	0.989	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453				160	0	0	151	29	16.1111
TRIO	0	genome.wustl.edu	37	5	14358426	14358426	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	5	14358426	14358426	A	C	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.2186	p.K729T	1.000	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				173	0	0	132	13	8.96552
LARS	0	genome.wustl.edu	37	5	145532787	145532787	+	Silent	SNP	A	A	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	5	145532787	145532787	A	G	SNP	LARS	ENST00000394434	human	ensembl	74_37	-1	known	silent	c.1234	p.L412	0.927	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706				73	0	0	105	6	5.40541
IRX1	0	genome.wustl.edu	37	5	3596470	3596470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	5	3596470	3596470	C	T	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.251	p.A84V	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				12	0	0	20	6	23.0769
FAM174A	0	genome.wustl.edu	37	5	99871538	99871538	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	5	99871538	99871538	G	T	SNP	FAM174A	ENST00000312637	human	ensembl	74_37	+1	known	nonsense	c.304	p.E102*	0.031	pfam_DUF1180	pfam_DUF1180	-	no_errors	FAM174A	HGNC	ENSG00000174132				36	0	0	45	6	11.7647
SOGA3	0	genome.wustl.edu	37	6	127837076	127837076	+	Silent	SNP	T	T	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	6	127837076	127837076	T	C	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	silent	c.684	p.G228	0.004	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				46	0	0	55	10	15.3846
TXLNB	0	genome.wustl.edu	37	6	139583902	139583902	+	Silent	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	6	139583902	139583902	C	T	SNP	TXLNB	ENST00000358430	human	ensembl	74_37	-1	known	silent	c.696	p.A232	0.445	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNB	HGNC	ENSG00000164440				70	0	0	78	14	15.2174
BTN1A1	0	genome.wustl.edu	37	6	26509108	26509108	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	6	26509108	26509108	A	C	SNP	BTN1A1	ENST00000244513	human	ensembl	74_37	+1	known	missense	c.1287	p.E429D	0.003	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557				61	0	0	53	17	24.2857
PPP1R10	0	genome.wustl.edu	37	6	30570080	30570080	+	Silent	SNP	G	G	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	6	30570080	30570080	G	T	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	silent	c.2346	p.R782	0.862	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				363	0	0	298	44	12.8655
PPP1R10	0	genome.wustl.edu	37	6	30570172	30570172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	6	30570172	30570172	G	A	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	missense	c.2254	p.R752C	0.055	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				278	0	0	274	48	14.9068
TJAP1	0	genome.wustl.edu	37	6	43473500	43473500	+	Silent	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	6	43473500	43473500	C	T	SNP	TJAP1	ENST00000372445	human	ensembl	74_37	+1	known	silent	c.1581	p.R527	0.275	NULL	NULL	-	no_errors	TJAP1	HGNC	ENSG00000137221				30	0	0	10	4	28.5714
TBX18	0	genome.wustl.edu	37	6	85448240	85448240	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	6	85448240	85448240	T	A	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	missense	c.1074	p.E358D	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				289	0	0	383	52	11.954
RELN	0	genome.wustl.edu	37	7	103151360	103151360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	7	103151360	103151360	G	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.8212	p.R2738W	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				43	0	0	61	9	12.8571
DNAJB9	0	genome.wustl.edu	37	7	108212273	108212273	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	7	108212273	108212273	A	G	SNP	DNAJB9	ENST00000249356	human	ensembl	74_37	+1	known	missense	c.103	p.K35E	1.000	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB9	HGNC	ENSG00000128590				172	0	0	279	29	9.41558
MKLN1	0	genome.wustl.edu	37	7	131148071	131148071	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	7	131148071	131148071	G	A	SNP	MKLN1	ENST00000352689	human	ensembl	74_37	+1	known	missense	c.1621	p.E541K	1.000	NULL	pfam_Muskelin_N,pfam_Kelch_1,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_LisH_dimerisation,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MKLN1	HGNC	ENSG00000128585				105	0	0	194	27	12.2172
ZNF777	0	genome.wustl.edu	37	7	149129362	149129362	+	Silent	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	7	149129362	149129362	G	A	SNP	ZNF777	ENST00000247930	human	ensembl	74_37	-1	known	silent	c.2001	p.P667	0.710	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453				273	0	0	249	86	25.6716
SCRN1	0	genome.wustl.edu	37	7	29983686	29983686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	7	29983686	29983686	G	A	SNP	SCRN1	ENST00000434476	human	ensembl	74_37	-1	known	missense	c.511	p.H171Y	1.000	pfam_Peptidase_C69	pfam_Peptidase_C69	-	no_errors	SCRN1	HGNC	ENSG00000136193				116	0	0	162	16	8.98876
HECW1	0	genome.wustl.edu	37	7	43436443	43436443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	7	43436443	43436443	G	A	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	missense	c.586	p.V196I	0.002	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				97	0	0	102	39	27.6596
RIMS2	0	genome.wustl.edu	37	8	104922645	104922645	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	8	104922645	104922645	G	T	SNP	RIMS2	ENST00000262231	human	ensembl	74_37	+1	known	missense	c.1145	p.G382V	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	RIMS2	HGNC	ENSG00000176406				115	0	0	170	29	14.5729
DOCK5	0	genome.wustl.edu	37	8	25266394	25266394	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	8	25266394	25266394	C	T	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	missense	c.5342	p.S1781L	0.073	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				79	0	0	102	10	8.92857
ADAM2	0	genome.wustl.edu	37	8	39695695	39695695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	8	39695695	39695695	C	T	SNP	ADAM2	ENST00000265708	human	ensembl	74_37	-1	known	missense	c.10	p.V4I	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM2	HGNC	ENSG00000104755				86	0	0	83	11	11.7021
XKR9	0	genome.wustl.edu	37	8	71593358	71593358	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	8	71593358	71593358	T	C	SNP	XKR9	ENST00000408926	human	ensembl	74_37	+1	known	missense	c.65	p.L22S	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR9	HGNC	ENSG00000221947				115	0	0	219	37	14.4531
PDP1	0	genome.wustl.edu	37	8	94934649	94934649	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	8	94934649	94934649	C	G	SNP	PDP1	ENST00000396200	human	ensembl	74_37	+1	known	missense	c.437	p.A146G	1.000	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PDP1	HGNC	ENSG00000164951				173	0	0	181	22	10.8374
TEK	0	genome.wustl.edu	37	9	27185587	27185587	+	Silent	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	9	27185587	27185587	G	A	SNP	TEK	ENST00000380036	human	ensembl	74_37	+1	known	silent	c.1287	p.V429	0.999	pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156				82	0	0	116	20	14.7059
FBXO10	0	genome.wustl.edu	37	9	37541712	37541712	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	9	37541712	37541712	C	A	SNP	FBXO10	ENST00000432825	human	ensembl	74_37	-1	known	missense	c.54	p.L18F	1.000	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,pfscan_F-box_dom,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO10	HGNC	ENSG00000147912				68	0	0	86	14	14
ARMCX2	0	genome.wustl.edu	37	X	100912607	100912607	+	RNA	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	X	100912607	100912607	G	A	SNP	ARMCX2	ENST00000467416	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARMCX2	HGNC	ENSG00000184867				94	0	0	132	15	10.2041
BEX4	0	genome.wustl.edu	37	X	102471359	102471359	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	X	102471359	102471359	A	G	SNP	BEX4	ENST00000372691	human	ensembl	74_37	+1	known	missense	c.278	p.K93R	0.022	pfam_TF_A-like/BEX-like,pirsf_BEX	pfam_TF_A-like/BEX-like,pirsf_BEX	-	no_errors	BEX4	HGNC	ENSG00000102409				178	0	0	198	32	13.913
GPR112	0	genome.wustl.edu	37	X	135445660	135445660	+	Silent	SNP	A	A	G			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	X	135445660	135445660	A	G	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	silent	c.7302	p.K2434	0.998	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				81	0	0	125	22	14.966
ABCD1	0	genome.wustl.edu	37	X	153001826	153001826	+	Silent	SNP	C	C	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	X	153001826	153001826	C	A	SNP	ABCD1	ENST00000218104	human	ensembl	74_37	+1	known	silent	c.1252	p.R418	1.000	superfamily_ABC1_TM_dom,tigrfam_FA_transporter	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	-	no_errors	ABCD1	HGNC	ENSG00000101986				115	0	0	92	19	17.1171
HCFC1	0	genome.wustl.edu	37	X	153219978	153219978	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	X	153219978	153219978	T	C	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	missense	c.3872	p.N1291S	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				253	0	0	196	46	19.0083
REPS2	0	genome.wustl.edu	37	X	17073008	17073008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	X	17073008	17073008	G	A	SNP	REPS2	ENST00000357277	human	ensembl	74_37	+1	known	missense	c.1049	p.R350Q	1.000	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS2	HGNC	ENSG00000169891				95	0	0	70	26	27.0833
TBC1D25	0	genome.wustl.edu	37	X	48403295	48403295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	X	48403295	48403295	G	A	SNP	TBC1D25	ENST00000376771	human	ensembl	74_37	+1	known	missense	c.272	p.R91Q	0.569	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354				106	0	0	102	7	6.42202
PHTF1	0	genome.wustl.edu	37	1	114248779	114248780	+	In_Frame_Ins	INS	-	-	TTGACC			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	1	114248779	114248780	-	TTGACC	INS	PHTF1	ENST00000369604	human	ensembl	74_37	-1	known	in_frame_ins	c.1404_1403	p.468in_frame_insKV	0.988:0.998	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF1	HGNC	ENSG00000116793				89	0	0	117	9	7.14286
IKZF5	0	genome.wustl.edu	37	10	124753769	124753769	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	10	124753769	124753769	A	-	DEL	IKZF5	ENST00000368886	human	ensembl	74_37	-1	known	frame_shift_del	c.787	p.S263fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF5	HGNC	ENSG00000095574				152	0	0	177	21	10.6061
IRF2	0	genome.wustl.edu	37	4	185310092	185310092	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8285-01A-11D-2340-08	TCGA-BR-8285-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29638769-0fdb-4267-a661-269681bb2e2e	3efce1fa-de52-4f33-baa4-d93fbe974918	4	185310092	185310092	G	-	DEL	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	frame_shift_del	c.870	p.T291fs	1.000	pirsf_Interferon_reg_fac-1/2	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				187	0	0	195	39	16.6667
