Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
KIF1B	0	genome.wustl.edu	37	1	10336421	10336421	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	10336421	10336421	C	T	SNP	KIF1B	ENST00000263934	human	ensembl	74_37	+1	known	missense	c.983	p.A328V	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523				63	0	0	36	11	23.4043
PRAMEF10	0	genome.wustl.edu	37	1	12955425	12955425	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	12955425	12955425	A	C	SNP	PRAMEF10	ENST00000235347	human	ensembl	74_37	-1	known	missense	c.254	p.L85R	0.001	NULL	NULL	-	no_errors	PRAMEF10	HGNC	ENSG00000187545				110	0	0	97	6	5.82524
MTMR11	0	genome.wustl.edu	37	1	149900751	149900751	+	RNA	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	149900751	149900751	C	T	SNP	MTMR11	ENST00000466496	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	MTMR11	HGNC	ENSG00000014914				97	0	0	38	11	22.449
CGN	0	genome.wustl.edu	37	1	151497219	151497219	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	151497219	151497219	A	G	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	missense	c.1471	p.R491G	0.737	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				49	0	0	20	8	28.5714
HRNR	0	genome.wustl.edu	37	1	152187979	152187979	+	Silent	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	152187979	152187979	G	A	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.6126	p.H2042	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				1150	1	0.086881	987	116	10.5168
FLG	0	genome.wustl.edu	37	1	152285861	152285861	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	152285861	152285861	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	nonsense	c.1501	p.R501*	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				685	0	0	405	227	35.9177
LCE1C	0	genome.wustl.edu	37	1	152777707	152777707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	152777707	152777707	C	T	SNP	LCE1C	ENST00000368768	human	ensembl	74_37	-1	known	missense	c.248	p.R83H	0.161	NULL	NULL	-	no_errors	LCE1C	HGNC	ENSG00000197084				200	0	0	109	73	40.1099
NES	0	genome.wustl.edu	37	1	156645073	156645073	+	Silent	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	156645073	156645073	G	A	SNP	NES	ENST00000368223	human	ensembl	74_37	-1	known	silent	c.843	p.V281	1.000	pfam_IF	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				106	0	0	78	15	16.129
CD5L	0	genome.wustl.edu	37	1	157804319	157804319	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	157804319	157804319	T	C	SNP	CD5L	ENST00000368174	human	ensembl	74_37	-1	known	missense	c.596	p.K199R	0.081	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD5L	HGNC	ENSG00000073754				123	0	0	83	17	17
CD5L	0	genome.wustl.edu	37	1	157804432	157804432	+	Silent	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	157804432	157804432	G	A	SNP	CD5L	ENST00000368174	human	ensembl	74_37	-1	known	silent	c.483	p.T161	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD5L	HGNC	ENSG00000073754				245	0	0	184	17	8.45771
CD1E	0	genome.wustl.edu	37	1	158325943	158325943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	158325943	158325943	G	A	SNP	CD1E	ENST00000434258	human	ensembl	74_37	+1	known	missense	c.946	p.G316R	0.000	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1E	HGNC	ENSG00000158488				57	0	0	39	5	11.3636
CROCCP2	0	genome.wustl.edu	37	1	16952351	16952351	+	RNA	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	16952351	16952351	C	T	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.509	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				13	0	0	15	5	25
TNR	0	genome.wustl.edu	37	1	175324675	175324675	+	Silent	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	175324675	175324675	A	G	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	silent	c.3213	p.Y1071	0.988	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				183	0	0	73	43	37.069
ASTN1	0	genome.wustl.edu	37	1	176903398	176903398	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	176903398	176903398	T	C	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	missense	c.2585	p.N862S	1.000	smart_MACPF	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				110	0	0	89	12	11.8812
CFH	0	genome.wustl.edu	37	1	196694307	196694307	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	196694307	196694307	G	A	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	missense	c.1753	p.D585N	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971				91	0	0	37	13	26
SUSD4	0	genome.wustl.edu	37	1	223465898	223465898	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	223465898	223465898	G	A	SNP	SUSD4	ENST00000343846	human	ensembl	74_37	-1	known	nonsense	c.244	p.R82*	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD4	HGNC	ENSG00000143502				216	0	0	119	29	19.5946
OBSCN	0	genome.wustl.edu	37	1	228475397	228475397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	228475397	228475397	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.9547	p.R3183W	0.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				55	0	0	34	22	39.2857
OR14C36	0	genome.wustl.edu	37	1	248512867	248512867	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	248512867	248512867	C	T	SNP	OR14C36	ENST00000317861	human	ensembl	74_37	+1	known	missense	c.791	p.P264L	0.029	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14C36	HGNC	ENSG00000177174				197	0	0	125	23	15.5405
CEP85	0	genome.wustl.edu	37	1	26586136	26586136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	26586136	26586136	G	A	SNP	CEP85	ENST00000252992	human	ensembl	74_37	+1	known	missense	c.1184	p.R395H	1.000	NULL	NULL	-	no_errors	CEP85	HGNC	ENSG00000130695				254	2	0.78125	117	52	30.7692
MCOLN2	0	genome.wustl.edu	37	1	85431387	85431387	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	85431387	85431387	C	A	SNP	MCOLN2	ENST00000370608	human	ensembl	74_37	-1	known	missense	c.82	p.A28S	0.006	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898				69	0	0	28	11	28.2051
NOC2L	0	genome.wustl.edu	37	1	889226	889226	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	889226	889226	C	T	SNP	NOC2L	ENST00000327044	human	ensembl	74_37	-1	known	missense	c.824	p.R275Q	0.986	superfamily_ARM-type_fold	pfam_Noc2,superfamily_ARM-type_fold	-	no_errors	NOC2L	HGNC	ENSG00000188976				101	0	0	44	28	38.8889
C10orf137	0	genome.wustl.edu	37	10	127427012	127427012	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	10	127427012	127427012	A	C	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	missense	c.1979	p.K660T	1.000	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				107	0	0	77	5	6.09756
MEIG1	0	genome.wustl.edu	37	10	15014613	15014613	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	10	15014613	15014613	C	T	SNP	MEIG1	ENST00000378240	human	ensembl	74_37	+1	known	silent	c.240	p.V80	0.893	NULL	NULL	-	no_errors	MEIG1	HGNC	ENSG00000197889				63	0	0	40	6	13.0435
PLXDC2	0	genome.wustl.edu	37	10	20500613	20500613	+	Silent	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	10	20500613	20500613	T	C	SNP	PLXDC2	ENST00000377252	human	ensembl	74_37	+1	known	silent	c.1077	p.F359	0.978	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	-	no_errors	PLXDC2	HGNC	ENSG00000120594				82	0	0	50	10	16.6667
ZEB1	0	genome.wustl.edu	37	10	31816022	31816022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	10	31816022	31816022	G	A	SNP	ZEB1	ENST00000361642	human	ensembl	74_37	+1	known	missense	c.3208	p.E1070K	0.971	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516				31	0	0	16	12	42.8571
TMEM72	0	genome.wustl.edu	37	10	45430170	45430170	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	10	45430170	45430170	C	A	SNP	TMEM72	ENST00000544540	human	ensembl	74_37	+1	known	missense	c.62	p.A21D	0.000	NULL	NULL	-	no_errors	TMEM72	HGNC	ENSG00000187783				201	0	0	117	53	31.1765
GDF10	0	genome.wustl.edu	37	10	48428669	48428669	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	10	48428669	48428669	G	A	SNP	GDF10	ENST00000224605	human	ensembl	74_37	-1	known	missense	c.1217	p.A406V	0.996	pfam_TGF-b_C,smart_TGF-b_C,pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	GDF10	HGNC	ENSG00000107623				86	0	0	59	8	11.9403
ZWINT	0	genome.wustl.edu	37	10	58118593	58118593	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	10	58118593	58118593	G	A	SNP	ZWINT	ENST00000373944	human	ensembl	74_37	-1	known	missense	c.596	p.A199V	0.924	NULL	NULL	-	no_errors	ZWINT	HGNC	ENSG00000122952				257	0	0	104	42	28.7671
AVPI1	0	genome.wustl.edu	37	10	99439503	99439503	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	10	99439503	99439503	G	C	SNP	AVPI1	ENST00000370626	human	ensembl	74_37	-1	known	missense	c.160	p.R54G	0.993	NULL	NULL	-	no_errors	AVPI1	HGNC	ENSG00000119986				97	0	0	59	7	10.6061
APOA4	0	genome.wustl.edu	37	11	116692384	116692384	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	116692384	116692384	C	T	SNP	APOA4	ENST00000357780	human	ensembl	74_37	-1	known	silent	c.390	p.E130	0.046	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244				18	0	0	19	9	32.1429
MCAM	0	genome.wustl.edu	37	11	119183298	119183298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	119183298	119183298	C	T	SNP	MCAM	ENST00000264036	human	ensembl	74_37	-1	known	missense	c.800	p.R267H	0.007	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MCAM	HGNC	ENSG00000076706				213	0	0	109	32	22.695
OR10G4	0	genome.wustl.edu	37	11	123886393	123886393	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	123886393	123886393	C	T	SNP	OR10G4	ENST00000320891	human	ensembl	74_37	+1	known	silent	c.112	p.L38	0.248	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737				224	0	0	91	56	38.0952
FLI1	0	genome.wustl.edu	37	11	128679074	128679074	+	Silent	SNP	G	G	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	128679074	128679074	G	T	SNP	FLI1	ENST00000527786	human	ensembl	74_37	+1	known	silent	c.804	p.P268	0.000	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	FLI1	HGNC	ENSG00000151702				131	0	0	73	13	15.1163
LDHA	0	genome.wustl.edu	37	11	18424400	18424400	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	18424400	18424400	C	T	SNP	LDHA	ENST00000540430	human	ensembl	74_37	+1	known	silent	c.519	p.T173	1.000	pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHA	HGNC	ENSG00000134333				150	0	0	65	4	5.7971
TNNI2	0	genome.wustl.edu	37	11	1860928	1860928	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	1860928	1860928	T	A	SNP	TNNI2	ENST00000252898	human	ensembl	74_37	+1	known	missense	c.2	p.M1K	1.000	NULL	pfam_Troponin	-	no_errors	TNNI2	HGNC	ENSG00000130598				102	0	0	44	13	22.807
IGF2-AS	0	genome.wustl.edu	37	11	2167572	2167572	+	RNA	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	2167572	2167572	G	A	SNP	IGF2-AS	ENST00000381361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IGF2-AS	HGNC	ENSG00000099869				213	0	0	121	39	24.375
OR51G2	0	genome.wustl.edu	37	11	4936037	4936037	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	4936037	4936037	A	C	SNP	OR51G2	ENST00000322013	human	ensembl	74_37	-1	known	missense	c.857	p.L286R	0.938	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G2	HGNC	ENSG00000176893				113	0	0	55	15	21.4286
OR51G2	0	genome.wustl.edu	37	11	4936528	4936528	+	Silent	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	4936528	4936528	A	G	SNP	OR51G2	ENST00000322013	human	ensembl	74_37	-1	known	silent	c.366	p.S122	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G2	HGNC	ENSG00000176893				76	0	0	46	11	19.2982
OR51A4	0	genome.wustl.edu	37	11	4967766	4967766	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	4967766	4967766	A	T	SNP	OR51A4	ENST00000380373	human	ensembl	74_37	-1	known	missense	c.565	p.L189M	0.062	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51A4	HGNC	ENSG00000205497				324	0	0	129	12	8.51064
OR5T3	0	genome.wustl.edu	37	11	56020329	56020329	+	Silent	SNP	T	T	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	56020329	56020329	T	G	SNP	OR5T3	ENST00000303059	human	ensembl	74_37	+1	known	silent	c.654	p.S218	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T3	HGNC	ENSG00000172489				419	0	0	223	13	5.50847
OR5B2	0	genome.wustl.edu	37	11	58189920	58189920	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	58189920	58189920	G	C	SNP	OR5B2	ENST00000302581	human	ensembl	74_37	-1	known	missense	c.815	p.A272G	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5B2	HGNC	ENSG00000172365				126	0	0	38	29	43.2836
APBB1	0	genome.wustl.edu	37	11	6422615	6422615	+	Silent	SNP	G	G	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	6422615	6422615	G	T	SNP	APBB1	ENST00000389906	human	ensembl	74_37	-1	known	silent	c.1548	p.L516	0.997	NULL	pfam_PTB/PI_dom,pfam_WW_dom,pfam_PTB,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB1	HGNC	ENSG00000166313				139	0	0	59	13	18.0556
NADSYN1	0	genome.wustl.edu	37	11	71208604	71208604	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	71208604	71208604	A	T	SNP	NADSYN1	ENST00000319023	human	ensembl	74_37	+1	known	missense	c.1840	p.S614C	1.000	pirsf_Gln-dep_NAD_synthase,tigrfam_NAD_synthase	pfam_C-N_Hydrolase,pfam_NAD/GMP_synthase,superfamily_C-N_Hydrolase,pirsf_Gln-dep_NAD_synthase,pfscan_C-N_Hydrolase,tigrfam_NAD_synthase	-	no_errors	NADSYN1	HGNC	ENSG00000172890				116	0	0	47	19	28.7879
KSR2	0	genome.wustl.edu	37	12	117914308	117914308	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	12	117914308	117914308	T	G	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	missense	c.2543	p.K848T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435				17	0	0	15	3	16.6667
DDX11	0	genome.wustl.edu	37	12	31237978	31237978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	12	31237978	31237978	C	T	SNP	DDX11	ENST00000407793	human	ensembl	74_37	+1	known	missense	c.556	p.R186W	0.002	superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573				42	0	0	19	4	17.3913
KRT5	0	genome.wustl.edu	37	12	52912853	52912853	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	12	52912853	52912853	T	A	SNP	KRT5	ENST00000252242	human	ensembl	74_37	-1	known	missense	c.647	p.E216V	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT5	HGNC	ENSG00000186081				241	0	0	110	33	23.0769
IKZF4	0	genome.wustl.edu	37	12	56420736	56420736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	12	56420736	56420736	G	A	SNP	IKZF4	ENST00000262032	human	ensembl	74_37	+1	known	missense	c.458	p.R153Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411				38	0	0	17	7	29.1667
FAM90A1	0	genome.wustl.edu	37	12	8375360	8375360	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	12	8375360	8375360	C	T	SNP	FAM90A1	ENST00000307435	human	ensembl	74_37	-1	known	silent	c.453	p.P151	0.013	NULL	NULL	-	no_errors	FAM90A1	HGNC	ENSG00000171847				40	0	0	9	12	57.1429
FAM155A	0	genome.wustl.edu	37	13	108518522	108518522	+	Silent	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	13	108518522	108518522	G	A	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	silent	c.423	p.G141	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				49	0	0	32	6	15.7895
UPF3A	0	genome.wustl.edu	37	13	115047496	115047496	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	13	115047496	115047496	G	C	SNP	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	missense	c.208	p.V70L	1.000	pfam_Nonsense_mediated_decay_UPF3	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				11	0	0	15	4	21.0526
BRCA2	0	genome.wustl.edu	37	13	32911315	32911315	+	Silent	SNP	G	G	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	13	32911315	32911315	G	C	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	silent	c.2823	p.V941	0.000	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				106	0	0	49	30	37.9747
MAB21L1	0	genome.wustl.edu	37	13	36049997	36049997	+	Silent	SNP	T	T	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	13	36049997	36049997	T	G	SNP	MAB21L1	ENST00000379919	human	ensembl	74_37	-1	known	silent	c.279	p.S93	0.984	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MAB21L1	HGNC	ENSG00000180660				181	0	0	91	33	26.6129
DCLK1	0	genome.wustl.edu	37	13	36367576	36367576	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	13	36367576	36367576	G	C	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.1985	p.A662G	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				185	0	0	59	35	37.234
DAAM1	0	genome.wustl.edu	37	14	59791093	59791093	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	14	59791093	59791093	C	A	SNP	DAAM1	ENST00000351081	human	ensembl	74_37	+1	known	missense	c.910	p.L304I	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DAAM1	HGNC	ENSG00000100592				153	0	0	22	23	51.1111
NGB	0	genome.wustl.edu	37	14	77737252	77737252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	14	77737252	77737252	C	T	SNP	NGB	ENST00000298352	human	ensembl	74_37	-1	known	missense	c.29	p.R10Q	1.000	pfam_Globin,superfamily_Globin-like,pfscan_Globin	pfam_Globin,superfamily_Globin-like,pfscan_Globin	-	no_errors	NGB	HGNC	ENSG00000165553				15	0	0	1	6	85.7143
DUOX1	0	genome.wustl.edu	37	15	45433204	45433204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	15	45433204	45433204	G	A	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	missense	c.1501	p.V501I	0.989	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				251	0	0	56	63	52.9412
SHC4	0	genome.wustl.edu	37	15	49148239	49148239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	15	49148239	49148239	C	T	SNP	SHC4	ENST00000332408	human	ensembl	74_37	-1	known	missense	c.1153	p.V385I	0.173	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634				230	0	0	80	31	27.9279
ATXN2L	0	genome.wustl.edu	37	16	28841303	28841303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	16	28841303	28841303	G	A	SNP	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	missense	c.958	p.G320R	1.000	pfam_LsmAD_domain	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				93	0	0	52	5	8.77193
ROGDI	0	genome.wustl.edu	37	16	4848162	4848162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	16	4848162	4848162	C	T	SNP	ROGDI	ENST00000587377	human	ensembl	74_37	-1	known	missense	c.568	p.V190I	0.039	NULL	pfam_RAVE2/Rogdi	-	no_errors	ROGDI	HGNC	ENSG00000067836				63	0	0	34	16	32
CES2	0	genome.wustl.edu	37	16	66976138	66976138	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	16	66976138	66976138	T	C	SNP	CES2	ENST00000317091	human	ensembl	74_37	+1	known	missense	c.1460	p.V487A	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES2	HGNC	ENSG00000172831				119	0	0	33	35	51.4706
EDC4	0	genome.wustl.edu	37	16	67918031	67918031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	16	67918031	67918031	G	A	SNP	EDC4	ENST00000358933	human	ensembl	74_37	+1	known	missense	c.4186	p.V1396M	1.000	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358				38	0	0	20	6	23.0769
CMTR2	0	genome.wustl.edu	37	16	71319389	71319389	+	Silent	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	16	71319389	71319389	T	C	SNP	CMTR2	ENST00000338099	human	ensembl	74_37	-1	known	silent	c.435	p.E145	1.000	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	CMTR2	HGNC	ENSG00000180917				166	0	0	69	5	6.75676
CHST6	0	genome.wustl.edu	37	16	75513372	75513372	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	16	75513372	75513372	C	G	SNP	CHST6	ENST00000332272	human	ensembl	74_37	-1	known	missense	c.355	p.D119H	0.899	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST6	HGNC	ENSG00000183196				121	0	0	86	7	7.52688
GRIN2A	0	genome.wustl.edu	37	16	9857925	9857925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	16	9857925	9857925	C	T	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	missense	c.3476	p.R1159H	0.993	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				329	0	0	94	97	50.7853
MIEF2	0	genome.wustl.edu	37	17	18166065	18166065	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	17	18166065	18166065	C	T	SNP	MIEF2	ENST00000323019	human	ensembl	74_37	+1	known	missense	c.31	p.R11W	0.572	NULL	NULL	-	no_errors	MIEF2	HGNC	ENSG00000177427				101	0	0	26	10	27.7778
TBC1D29	0	genome.wustl.edu	37	17	28887643	28887643	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	17	28887643	28887643	C	T	SNP	TBC1D29	ENST00000579181	human	ensembl	74_37	+1	known	silent	c.87	p.L29	1.000	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D29	HGNC	ENSG00000266733				188	0	0	84	24	22.2222
SMARCE1	0	genome.wustl.edu	37	17	38792281	38792281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	17	38792281	38792281	C	T	SNP	SMARCE1	ENST00000348513	human	ensembl	74_37	-1	known	missense	c.443	p.R148H	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SMARCE1	HGNC	ENSG00000073584				221	0	0	70	46	39.6552
TBC1D3P2	0	genome.wustl.edu	37	17	60342186	60342186	+	RNA	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	17	60342186	60342186	T	C	SNP	TBC1D3P2	ENST00000581291	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	TBC1D3P2	HGNC	ENSG00000188755				34	0	0	15	3	16.6667
DNAI2	0	genome.wustl.edu	37	17	72295929	72295929	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	17	72295929	72295929	T	C	SNP	DNAI2	ENST00000311014	human	ensembl	74_37	+1	known	missense	c.797	p.V266A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI2	HGNC	ENSG00000171595				87	0	0	47	8	14.5455
TP53	0	genome.wustl.edu	37	17	7577548	7577548	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	17	7577548	7577548	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.733	p.G245S	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				131	0	0	26	43	62.3188
ANKRD20A5P	0	genome.wustl.edu	37	18	14220038	14220038	+	RNA	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	18	14220038	14220038	A	G	SNP	ANKRD20A5P	ENST00000583348	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ANKRD20A5P	HGNC	ENSG00000186481				55	0	0	21	2	8.69565
IER3IP1	0	genome.wustl.edu	37	18	44683851	44683851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	18	44683851	44683851	G	A	SNP	IER3IP1	ENST00000256433	human	ensembl	74_37	-1	known	missense	c.149	p.S50L	1.000	pfam_Yos1	pfam_Yos1	-	no_errors	IER3IP1	HGNC	ENSG00000134049				209	0	0	38	42	52.5
SERPINB12	0	genome.wustl.edu	37	18	61231355	61231355	+	Splice_Site	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	18	61231355	61231355	T	C	SNP	SERPINB12	ENST00000269491	human	ensembl	74_37	+1	known	splice_site	c.645+2	e5+2	0.997	-	-	-	no_errors	SERPINB12	HGNC	ENSG00000166634				138	0	0	47	17	26.5625
SERPINB13	0	genome.wustl.edu	37	18	61255944	61255944	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	18	61255944	61255944	C	A	SNP	SERPINB13	ENST00000344731	human	ensembl	74_37	+1	known	missense	c.43	p.L15I	0.667	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB13	HGNC	ENSG00000197641				132	0	0	42	34	44.7368
ZNF181	0	genome.wustl.edu	37	19	35232159	35232159	+	Silent	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	19	35232159	35232159	A	G	SNP	ZNF181	ENST00000392232	human	ensembl	74_37	+1	known	silent	c.1005	p.K335	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF181	HGNC	ENSG00000197841				164	0	0	96	35	26.7176
ZNF781	0	genome.wustl.edu	37	19	38160229	38160229	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	19	38160229	38160229	T	C	SNP	ZNF781	ENST00000358582	human	ensembl	74_37	-1	known	missense	c.821	p.N274S	0.030	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF781	HGNC	ENSG00000196381				69	0	0	33	7	17.5
LRFN1	0	genome.wustl.edu	37	19	39805107	39805107	+	Silent	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	19	39805107	39805107	G	A	SNP	LRFN1	ENST00000248668	human	ensembl	74_37	-1	known	silent	c.870	p.P290	0.068	smart_Cys-rich_flank_reg_C	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN1	HGNC	ENSG00000128011				33	0	0	7	23	76.6667
CRX	0	genome.wustl.edu	37	19	48342758	48342758	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	19	48342758	48342758	C	A	SNP	CRX	ENST00000221996	human	ensembl	74_37	+1	known	missense	c.434	p.P145H	0.011	NULL	pfam_Homeobox_dom,pfam_Otx_TF_C,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	CRX	HGNC	ENSG00000105392				220	1	0.452489	46	106	69.7368
VN1R2	0	genome.wustl.edu	37	19	53762734	53762734	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	19	53762734	53762734	G	T	SNP	VN1R2	ENST00000341702	human	ensembl	74_37	+1	known	missense	c.1106	p.C369F	0.017	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,prints_Vmron_rcpt_1	pfam_Vmron_rcpt_1,pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_Vmron_rcpt_1	-	no_errors	VN1R2	HGNC	ENSG00000196131				245	0	0	118	50	29.7619
NLRP9	0	genome.wustl.edu	37	19	56235402	56235402	+	Silent	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	19	56235402	56235402	G	A	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	silent	c.2103	p.D701	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				156	0	0	107	19	15.0794
PEG3	0	genome.wustl.edu	37	19	57335005	57335005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	19	57335005	57335005	C	T	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.437	p.R146Q	0.002	smart_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				156	0	0	37	63	63
RFX2	0	genome.wustl.edu	37	19	6004219	6004219	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	19	6004219	6004219	T	A	SNP	RFX2	ENST00000303657	human	ensembl	74_37	-1	known	missense	c.1493	p.Q498L	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX2	HGNC	ENSG00000087903				195	0	0	40	57	58.7629
MUC16	0	genome.wustl.edu	37	19	9063752	9063752	+	Silent	SNP	T	T	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	19	9063752	9063752	T	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.23694	p.T7898	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				217	0	0	75	5	6.25
ZNF266	0	genome.wustl.edu	37	19	9524819	9524819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	19	9524819	9524819	G	A	SNP	ZNF266	ENST00000361151	human	ensembl	74_37	-1	known	missense	c.782	p.T261I	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF266	HGNC	ENSG00000174652				109	0	0	21	27	56.25
GREB1	0	genome.wustl.edu	37	2	11725893	11725893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	11725893	11725893	G	A	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.1021	p.A341T	0.001	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				90	0	0	39	26	40
TPO	0	genome.wustl.edu	37	2	1499847	1499847	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	1499847	1499847	A	C	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	missense	c.2093	p.N698T	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				47	0	0	16	11	40.7407
TPO	0	genome.wustl.edu	37	2	1500483	1500483	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	1500483	1500483	G	C	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	missense	c.2332	p.E778Q	0.980	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				249	0	0	102	50	32.8947
TTN	0	genome.wustl.edu	37	2	179452836	179452836	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	179452836	179452836	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.55594	p.V18532I	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				90	0	0	21	17	44.7368
TTN-AS1	0	genome.wustl.edu	37	2	179483605	179483605	+	RNA	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	179483605	179483605	C	T	SNP	TTN-AS1	ENST00000604956	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				45	0	0	8	5	38.4615
TTN	0	genome.wustl.edu	37	2	179604777	179604777	+	Silent	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	179604777	179604777	G	A	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	silent	c.12670	p.L4224	0.957	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				129	0	0	21	33	61.1111
ZNF804A	0	genome.wustl.edu	37	2	185801900	185801900	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	185801900	185801900	A	T	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.1777	p.S593C	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				129	0	0	56	4	6.66667
PUM2	0	genome.wustl.edu	37	2	20463105	20463105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	20463105	20463105	G	A	SNP	PUM2	ENST00000361078	human	ensembl	74_37	-1	known	missense	c.2074	p.P692S	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM2	HGNC	ENSG00000055917				112	0	0	66	15	18.5185
ABCA12	0	genome.wustl.edu	37	2	215812220	215812220	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	215812220	215812220	T	A	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.7165	p.M2389L	0.103	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				133	0	0	12	28	70
PTPRN	0	genome.wustl.edu	37	2	220164507	220164507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	220164507	220164507	G	A	SNP	PTPRN	ENST00000295718	human	ensembl	74_37	-1	known	missense	c.1438	p.P480S	1.000	pfam_Receptor_IA-2	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN	HGNC	ENSG00000054356				85	0	0	81	6	6.89655
KIF1A	0	genome.wustl.edu	37	2	241726728	241726728	+	Silent	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	241726728	241726728	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	silent	c.369	p.C123	0.993	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				137	0	0	37	39	51.3158
ALK	0	genome.wustl.edu	37	2	29551215	29551215	+	Splice_Site	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	29551215	29551215	C	T	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	splice_site	c.1414+1	e6+1	1.000	-	-	-	no_errors	ALK	HGNC	ENSG00000171094				115	0	0	46	18	28.125
THADA	0	genome.wustl.edu	37	2	43800003	43800003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	43800003	43800003	G	A	SNP	THADA	ENST00000405006	human	ensembl	74_37	-1	known	missense	c.1858	p.L620F	1.000	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970				80	0	0	50	10	16.6667
SPTBN1	0	genome.wustl.edu	37	2	54851961	54851961	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	54851961	54851961	A	C	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	missense	c.1203	p.K401N	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				86	0	0	42	15	26.3158
ETAA1	0	genome.wustl.edu	37	2	67632028	67632028	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	67632028	67632028	G	T	SNP	ETAA1	ENST00000272342	human	ensembl	74_37	+1	known	missense	c.2214	p.M738I	0.000	NULL	NULL	-	no_errors	ETAA1	HGNC	ENSG00000143971				82	0	0	35	11	23.913
INPP4A	0	genome.wustl.edu	37	2	99180037	99180037	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	99180037	99180037	C	T	SNP	INPP4A	ENST00000074304	human	ensembl	74_37	+1	known	silent	c.1980	p.S660	0.994	NULL	superfamily_C2_dom	-	no_errors	INPP4A	HGNC	ENSG00000040933				79	0	0	41	7	14.5833
INPP4A	0	genome.wustl.edu	37	2	99182628	99182628	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	99182628	99182628	G	T	SNP	INPP4A	ENST00000074304	human	ensembl	74_37	+1	known	nonsense	c.2431	p.E811*	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4A	HGNC	ENSG00000040933				22	0	0	16	3	15.7895
HUNK	0	genome.wustl.edu	37	21	33318457	33318457	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	21	33318457	33318457	C	T	SNP	HUNK	ENST00000270112	human	ensembl	74_37	+1	known	silent	c.720	p.Y240	0.156	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HUNK	HGNC	ENSG00000142149				99	0	0	47	33	41.25
ADARB1	0	genome.wustl.edu	37	21	46602630	46602630	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	21	46602630	46602630	G	T	SNP	ADARB1	ENST00000360697	human	ensembl	74_37	+1	known	missense	c.1209	p.L403F	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,superfamily_Cytokine_IL1-like,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381				56	0	0	30	7	18.9189
CLTCL1	0	genome.wustl.edu	37	22	19207439	19207439	+	Silent	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	22	19207439	19207439	G	A	SNP	CLTCL1	ENST00000263200	human	ensembl	74_37	-1	known	silent	c.2874	p.H958	0.016	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371				210	0	0	88	53	37.5887
IGLL5	0	genome.wustl.edu	37	22	23237753	23237753	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	22	23237753	23237753	C	T	SNP	IGLL5	ENST00000532223	human	ensembl	74_37	+1	known	missense	c.527	p.A176V	0.023	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	IGLL5	HGNC	ENSG00000254709				133	0	0	56	37	39.7849
CRYBA4	0	genome.wustl.edu	37	22	27026411	27026411	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	22	27026411	27026411	C	G	SNP	CRYBA4	ENST00000354760	human	ensembl	74_37	+1	known	missense	c.551	p.P184R	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA4	HGNC	ENSG00000196431				53	0	0	32	2	5.88235
SEC14L4	0	genome.wustl.edu	37	22	30886231	30886231	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	22	30886231	30886231	C	A	SNP	SEC14L4	ENST00000255858	human	ensembl	74_37	-1	known	missense	c.1084	p.V362F	1.000	superfamily_GOLD,pfscan_GOLD	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L4	HGNC	ENSG00000133488				138	0	0	111	21	15.9091
TMEM184B	0	genome.wustl.edu	37	22	38620889	38620889	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	22	38620889	38620889	C	T	SNP	TMEM184B	ENST00000361684	human	ensembl	74_37	-1	known	silent	c.885	p.Q295	1.000	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	TMEM184B	HGNC	ENSG00000198792				53	0	0	37	8	17.7778
PKDREJ	0	genome.wustl.edu	37	22	46656654	46656654	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	22	46656654	46656654	T	C	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.2566	p.T856A	0.000	pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				50	0	0	17	19	52.7778
EMC3	0	genome.wustl.edu	37	3	10018730	10018730	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	10018730	10018730	A	G	SNP	EMC3	ENST00000245046	human	ensembl	74_37	-1	known	missense	c.218	p.F73S	1.000	pfam_DUF106_TM,pirsf_UCP010045_TM_euk	pfam_DUF106_TM,pirsf_UCP010045_TM_euk	-	no_errors	EMC3	HGNC	ENSG00000125037				189	0	0	97	6	5.82524
IMPG2	0	genome.wustl.edu	37	3	100951812	100951812	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	100951812	100951812	A	T	SNP	IMPG2	ENST00000193391	human	ensembl	74_37	-1	known	missense	c.3046	p.F1016I	1.000	pfscan_EG-like_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG2	HGNC	ENSG00000081148				184	0	0	85	18	17.4757
BBX	0	genome.wustl.edu	37	3	107492475	107492475	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	107492475	107492475	T	C	SNP	BBX	ENST00000325805	human	ensembl	74_37	+1	known	missense	c.1907	p.V636A	1.000	NULL	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	BBX	HGNC	ENSG00000114439				79	0	0	16	18	52.9412
ALDH1L1	0	genome.wustl.edu	37	3	125879818	125879818	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	125879818	125879818	T	G	SNP	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	missense	c.5	p.K2T	1.000	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908				84	0	0	56	4	6.66667
STAG1	0	genome.wustl.edu	37	3	136057238	136057238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	136057238	136057238	A	G	SNP	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	missense	c.3727	p.S1243P	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007				133	0	0	45	17	27.4194
PRR23B	0	genome.wustl.edu	37	3	138739227	138739227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	138739227	138739227	C	T	SNP	PRR23B	ENST00000329447	human	ensembl	74_37	-1	known	missense	c.277	p.G93S	0.001	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23B	HGNC	ENSG00000184814				101	0	0	45	30	40
IGSF10	0	genome.wustl.edu	37	3	151163065	151163065	+	Silent	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	151163065	151163065	A	G	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	silent	c.4704	p.S1568	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				344	0	0	92	62	40.2597
VILL	0	genome.wustl.edu	37	3	38047335	38047335	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	38047335	38047335	G	A	SNP	VILL	ENST00000283713	human	ensembl	74_37	+1	known	nonsense	c.2003	p.W668*	0.995	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				207	0	0	65	60	48
SCN11A	0	genome.wustl.edu	37	3	38888324	38888324	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	38888324	38888324	T	G	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	missense	c.5237	p.K1746T	0.101	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				274	1	0.363636	104	31	22.963
PRSS45	0	genome.wustl.edu	37	3	46784042	46784042	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	46784042	46784042	A	C	SNP	PRSS45	ENST00000442359	human	ensembl	74_37	-1	known	missense	c.485	p.V162G	0.431	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS45	HGNC	ENSG00000188086				268	1	0.371747	151	49	24.5
DALRD3	0	genome.wustl.edu	37	3	49055175	49055175	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	49055175	49055175	C	T	SNP	DALRD3	ENST00000341949	human	ensembl	74_37	-1	known	missense	c.589	p.E197K	0.001	NULL	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	-	no_errors	DALRD3	HGNC	ENSG00000178149				105	0	0	59	9	13.2353
CACNA1D	0	genome.wustl.edu	37	3	53835248	53835248	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	53835248	53835248	C	T	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.5264	p.S1755L	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				153	0	0	71	8	10.1266
ARL13B	0	genome.wustl.edu	37	3	93768349	93768349	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	93768349	93768349	C	T	SNP	ARL13B	ENST00000394222	human	ensembl	74_37	+1	known	missense	c.1124	p.P375L	0.986	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL13B	HGNC	ENSG00000169379				122	0	0	67	10	12.987
OR5H14	0	genome.wustl.edu	37	3	97868965	97868965	+	Silent	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	3	97868965	97868965	T	C	SNP	OR5H14	ENST00000437310	human	ensembl	74_37	+1	known	silent	c.736	p.L246	0.028	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H14	HGNC	ENSG00000236032				85	0	0	30	11	26.8293
RBM47	0	genome.wustl.edu	37	4	40438548	40438548	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	4	40438548	40438548	C	A	SNP	RBM47	ENST00000295971	human	ensembl	74_37	-1	known	missense	c.1240	p.G414W	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694				372	0	0	84	110	56.701
ZRSR1	0	genome.wustl.edu	37	5	112228594	112228594	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	5	112228594	112228594	C	T	SNP	ZRSR1	ENST00000391338	human	ensembl	74_37	+1	known	missense	c.1258	p.R420W	0.035	NULL	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,pfscan_RRM_dom,prints_U2_small	-	no_errors	ZRSR1	HGNC	ENSG00000212643				36	0	0	24	5	17.2414
AQPEP	0	genome.wustl.edu	37	5	115346505	115346505	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	5	115346505	115346505	A	G	SNP	AQPEP	ENST00000357872	human	ensembl	74_37	+1	known	missense	c.2161	p.I721V	0.969	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	AQPEP	Uniprot_gn	ENSG00000172901				91	0	0	13	21	61.7647
DNAH5	0	genome.wustl.edu	37	5	13717530	13717530	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	5	13717530	13717530	T	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.12599	p.K4200T	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				63	0	0	55	7	11.2903
DNAH5	0	genome.wustl.edu	37	5	13824440	13824440	+	Silent	SNP	A	A	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	5	13824440	13824440	A	C	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.6447	p.V2149	0.002	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				89	0	0	68	10	12.8205
OR2V2	0	genome.wustl.edu	37	5	180582757	180582757	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	5	180582757	180582757	A	T	SNP	OR2V2	ENST00000328275	human	ensembl	74_37	+1	known	missense	c.815	p.D272V	0.016	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2V2	HGNC	ENSG00000182613				100	0	0	55	4	6.77966
CDH12	0	genome.wustl.edu	37	5	21751873	21751873	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	5	21751873	21751873	C	T	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	silent	c.2358	p.E786	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				219	0	0	90	47	34.3066
CDH6	0	genome.wustl.edu	37	5	31313471	31313471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	5	31313471	31313471	G	A	SNP	CDH6	ENST00000265071	human	ensembl	74_37	+1	known	missense	c.1300	p.D434N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361				229	0	0	102	60	37.037
GPR150	0	genome.wustl.edu	37	5	94956706	94956706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	5	94956706	94956706	G	A	SNP	GPR150	ENST00000380007	human	ensembl	74_37	+1	known	missense	c.727	p.A243T	0.926	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR150	HGNC	ENSG00000178015				32	0	0	4	13	76.4706
SOGA3	0	genome.wustl.edu	37	6	127837556	127837556	+	Silent	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	6	127837556	127837556	A	G	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	silent	c.204	p.N68	1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				123	0	0	50	11	18.0328
HLA-DQA2	0	genome.wustl.edu	37	6	32714123	32714123	+	Silent	SNP	C	C	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	6	32714123	32714123	C	A	SNP	HLA-DQA2	ENST00000374940	human	ensembl	74_37	+1	known	silent	c.720	p.I240	0.308	NULL	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DQA2	HGNC	ENSG00000237541				189	0	0	98	41	29.4964
WDR46	0	genome.wustl.edu	37	6	33248266	33248266	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	6	33248266	33248266	C	A	SNP	WDR46	ENST00000374617	human	ensembl	74_37	-1	known	missense	c.1463	p.S488I	0.981	pfam_BING4_C_dom	pfam_BING4_C_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR46	HGNC	ENSG00000227057				21	0	0	17	2	10.5263
NRN1	0	genome.wustl.edu	37	6	5999379	5999379	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	6	5999379	5999379	C	G	SNP	NRN1	ENST00000244766	human	ensembl	74_37	-1	known	missense	c.259	p.A87P	1.000	NULL	NULL	-	no_errors	NRN1	HGNC	ENSG00000124785				101	0	0	51	23	31.0811
ZNF292	0	genome.wustl.edu	37	6	87969804	87969804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	6	87969804	87969804	G	A	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	missense	c.6457	p.E2153K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				206	0	0	79	28	26.1682
MUC17	0	genome.wustl.edu	37	7	100687003	100687003	+	Silent	SNP	C	C	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	7	100687003	100687003	C	G	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	silent	c.12306	p.T4102	0.002	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				185	0	0	97	31	24.2188
ANKRD7	0	genome.wustl.edu	37	7	117864908	117864908	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	7	117864908	117864908	G	T	SNP	ANKRD7	ENST00000357099	human	ensembl	74_37	+1	known	missense	c.24	p.W8C	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD7	HGNC	ENSG00000106013				167	0	0	118	21	15.1079
TPK1	0	genome.wustl.edu	37	7	144463012	144463012	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	7	144463012	144463012	G	A	SNP	TPK1	ENST00000360057	human	ensembl	74_37	-1	known	nonsense	c.76	p.Q26*	1.000	superfamily_TPK_catalytic,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	pfam_TPK_catalytic,pfam_Thiamin_PyroPKinase_B1-bd,superfamily_TPK_catalytic,superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	-	no_errors	TPK1	HGNC	ENSG00000196511				160	0	0	77	14	15.3846
PTPRN2	0	genome.wustl.edu	37	7	157370783	157370783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	7	157370783	157370783	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.2615	p.A872V	0.168	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				144	0	0	58	42	42
FAM188B	0	genome.wustl.edu	37	7	30890083	30890083	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	7	30890083	30890083	T	C	SNP	FAM188B	ENST00000265299	human	ensembl	74_37	+1	known	missense	c.1459	p.S487P	1.000	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125				29	0	0	20	9	31.0345
CDK13	0	genome.wustl.edu	37	7	40132389	40132389	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	7	40132389	40132389	A	G	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	missense	c.3241	p.T1081A	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				127	0	0	58	12	17.1429
GLI3	0	genome.wustl.edu	37	7	42005605	42005605	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	7	42005605	42005605	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.3066	p.P1022	0.993	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				33	0	0	26	14	35
GLI3	0	genome.wustl.edu	37	7	42085089	42085089	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	7	42085089	42085089	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.720	p.Q240	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				141	0	0	87	6	6.45161
IGFBP1	0	genome.wustl.edu	37	7	45931573	45931573	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	7	45931573	45931573	G	T	SNP	IGFBP1	ENST00000275525	human	ensembl	74_37	+1	known	missense	c.562	p.A188S	0.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP1	-	no_errors	IGFBP1	HGNC	ENSG00000146678				69	0	0	37	20	35.0877
PCLO	0	genome.wustl.edu	37	7	82582874	82582874	+	Silent	SNP	T	T	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	7	82582874	82582874	T	G	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.7395	p.T2465	0.016	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				115	0	0	40	33	45.2055
ATP6V1C1	0	genome.wustl.edu	37	8	104068162	104068162	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	8	104068162	104068162	C	T	SNP	ATP6V1C1	ENST00000395862	human	ensembl	74_37	+1	known	silent	c.639	p.S213	1.000	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C1	HGNC	ENSG00000155097				110	0	0	24	55	69.6203
CSMD3	0	genome.wustl.edu	37	8	113585844	113585844	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	8	113585844	113585844	A	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.3928	p.F1310I	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				220	0	0	48	34	41.4634
BAI1	0	genome.wustl.edu	37	8	143624776	143624776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	8	143624776	143624776	C	T	SNP	BAI1	ENST00000323289	human	ensembl	74_37	+1	known	missense	c.4426	p.R1476W	0.999	prints_GPCR_2_brain-spec_angio_inhib	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790				58	0	0	14	13	48.1481
CYP11B1	0	genome.wustl.edu	37	8	143961157	143961157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	8	143961157	143961157	C	T	SNP	CYP11B1	ENST00000292427	human	ensembl	74_37	-1	known	missense	c.73	p.G25S	0.230	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882				226	0	0	82	50	37.8788
BOP1	0	genome.wustl.edu	37	8	145512860	145512860	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	8	145512860	145512860	G	A	SNP	BOP1	ENST00000529231	human	ensembl	74_37	-1	putative	missense	c.8	p.T3M	0.000	NULL	NULL	-	no_errors	BOP1	HGNC	ENSG00000170727				158	0	0	43	35	44.8718
PREX2	0	genome.wustl.edu	37	8	68930087	68930087	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	8	68930087	68930087	T	G	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.148	p.L50V	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				44	0	0	32	16	33.3333
CORO2A	0	genome.wustl.edu	37	9	100890891	100890891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	9	100890891	100890891	G	A	SNP	CORO2A	ENST00000343933	human	ensembl	74_37	-1	known	missense	c.1078	p.R360W	0.997	pfam_DUF1900	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2A	HGNC	ENSG00000106789				91	0	0	56	8	12.5
SVEP1	0	genome.wustl.edu	37	9	113261433	113261433	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	9	113261433	113261433	C	T	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	silent	c.1569	p.T523	0.000	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				69	0	0	36	11	23.4043
FKBP15	0	genome.wustl.edu	37	9	115959233	115959233	+	Silent	SNP	C	C	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	9	115959233	115959233	C	A	SNP	FKBP15	ENST00000238256	human	ensembl	74_37	-1	known	silent	c.843	p.V281	0.989	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321				87	0	0	30	19	38.7755
TLR4	0	genome.wustl.edu	37	9	120476848	120476848	+	Silent	SNP	C	C	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	9	120476848	120476848	C	G	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	silent	c.2442	p.A814	0.972	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				286	0	0	131	22	14.3791
LRSAM1	0	genome.wustl.edu	37	9	130249962	130249962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	9	130249962	130249962	G	A	SNP	LRSAM1	ENST00000300417	human	ensembl	74_37	+1	known	missense	c.1267	p.E423K	0.910	NULL	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356				30	0	0	14	6	30
GRIN1	0	genome.wustl.edu	37	9	140040199	140040199	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	9	140040199	140040199	C	T	SNP	GRIN1	ENST00000371561	human	ensembl	74_37	+1	known	missense	c.415	p.R139C	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_CaM-bd_C0_NMDA_rcpt_NR1,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN1	HGNC	ENSG00000176884				70	0	0	41	9	18
BNC2	0	genome.wustl.edu	37	9	16436012	16436012	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	9	16436012	16436012	T	C	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.2180	p.E727G	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				151	0	0	62	6	8.82353
ADAMTSL1	0	genome.wustl.edu	37	9	18680489	18680489	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	9	18680489	18680489	A	C	SNP	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	missense	c.1316	p.K439T	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				225	0	0	126	7	5.26316
PTPRD	0	genome.wustl.edu	37	9	8404618	8404618	+	Silent	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	9	8404618	8404618	A	G	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	silent	c.4129	p.L1377	1.000	smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				47	0	0	18	7	28
KLHL13	0	genome.wustl.edu	37	X	117043899	117043899	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	X	117043899	117043899	A	C	SNP	KLHL13	ENST00000539496	human	ensembl	74_37	-1	known	missense	c.740	p.L247R	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL13	HGNC	ENSG00000003096				152	0	0	79	42	34.7107
MAMLD1	0	genome.wustl.edu	37	X	149639247	149639247	+	Silent	SNP	T	T	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	X	149639247	149639247	T	C	SNP	MAMLD1	ENST00000432680	human	ensembl	74_37	+1	known	silent	c.1327	p.L443	0.031	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619				141	0	0	105	6	5.40541
ATP2B3	0	genome.wustl.edu	37	X	152825250	152825250	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	X	152825250	152825250	C	T	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	silent	c.2689	p.L897	0.998	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				89	0	0	45	22	32.8358
CXorf23	0	genome.wustl.edu	37	X	19947942	19947942	+	Silent	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	X	19947942	19947942	G	A	SNP	CXorf23	ENST00000379687	human	ensembl	74_37	-1	known	silent	c.1980	p.I660	1.000	NULL	NULL	-	no_errors	CXorf23	HGNC	ENSG00000173681				195	0	0	119	7	5.55556
MXRA5	0	genome.wustl.edu	37	X	3261861	3261861	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	X	3261861	3261861	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.14	p.A5V	0.001	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				27	0	0	8	21	72.4138
FAM47B	0	genome.wustl.edu	37	X	34962853	34962853	+	Silent	SNP	A	A	G			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	X	34962853	34962853	A	G	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	silent	c.1905	p.K635	0.002	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				173	0	0	69	36	34.2857
SLC35A2	0	genome.wustl.edu	37	X	48762575	48762575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	X	48762575	48762575	G	A	SNP	SLC35A2	ENST00000452555	human	ensembl	74_37	-1	known	missense	c.695	p.A232V	0.975	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	pfam_Nuc_sug_transpt,pfam_UAA,pfam_DMT,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A2	HGNC	ENSG00000102100				13	0	0	1	8	88.8889
PPP1R3F	0	genome.wustl.edu	37	X	49127037	49127037	+	Silent	SNP	C	C	T			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	X	49127037	49127037	C	T	SNP	PPP1R3F	ENST00000055335	human	ensembl	74_37	+1	known	silent	c.705	p.D235	0.998	pfam_CBM_21,pfscan_CBM_21	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3F	HGNC	ENSG00000049769				15	0	0	7	8	53.3333
LAS1L	0	genome.wustl.edu	37	X	64744084	64744084	+	Silent	SNP	G	G	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	X	64744084	64744084	G	A	SNP	LAS1L	ENST00000374811	human	ensembl	74_37	-1	known	silent	c.1152	p.P384	1.000	NULL	pfam_Las1	-	no_errors	LAS1L	HGNC	ENSG00000001497				23	0	0	11	9	45
COL11A1	0	genome.wustl.edu	37	1	103355063	103355063	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	1	103355063	103355063	C	-	DEL	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	frame_shift_del	c.4448	p.G1483fs	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				241	0	0	83	29	25.8929
PBLD	0	genome.wustl.edu	37	10	70051948	70051949	+	In_Frame_Ins	INS	-	-	TAGTTCTCC			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	10	70051948	70051949	-	TAGTTCTCC	INS	PBLD	ENST00000309049	human	ensembl	74_37	-1	known	in_frame_ins	c.331_330	p.110in_frame_insGEL	0.514:0.346	pfam_Phenazine_PhzF,pirsf_Phenazine_PhzF,tigrfam_Phenazine_PhzF	pfam_Phenazine_PhzF,pirsf_Phenazine_PhzF,tigrfam_Phenazine_PhzF	-	no_errors	PBLD	HGNC	ENSG00000108187				113	0	0	55	6	9.83607
CEP164	0	genome.wustl.edu	37	11	117222647	117222648	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	117222647	117222648	-	A	INS	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	frame_shift_ins	c.336_337	p.K116fs	1.000:1.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				55	0	0	25	2	7.40741
PDE2A	0	genome.wustl.edu	37	11	72307656	72307657	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	11	72307656	72307657	-	C	INS	PDE2A	ENST00000334456	human	ensembl	74_37	-1	known	frame_shift_ins	c.470_469	p.A157fs	0.230:0.234	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642				88	0	0	35	25	41.6667
HCN4	0	genome.wustl.edu	37	15	73615229	73615229	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	15	73615229	73615229	G	-	DEL	HCN4	ENST00000261917	human	ensembl	74_37	-1	known	frame_shift_del	c.3205	p.R1069fs	0.532	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622				11	0	0	3	2	40
LOC101928215	0	genome.wustl.edu	37	16	29118702	29118704	+	RNA	DEL	AGC	AGC	-			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	16	29118702	29118704	AGC	-	DEL	LOC101928215	ENST00000562618	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009:0.009:0.009	-	-	-	no_errors	CTB-134H23.3	Clone_based_vega_gene	ENSG00000260908				9	0	0	6	2	25
SLC4A10	0	genome.wustl.edu	37	2	162719565	162719566	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	2	162719565	162719566	-	A	INS	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	frame_shift_ins	c.759_760	p.N254fs	0.996:1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290				97	0	0	17	12	41.3793
ALG12	0	genome.wustl.edu	37	22	50302919	50302920	+	In_Frame_Ins	INS	-	-	GTG			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	22	50302919	50302920	-	GTG	INS	ALG12	ENST00000330817	human	ensembl	74_37	-1	known	in_frame_ins	c.741_740	p.248in_frame_insT	0.019:0.999	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	ALG12	HGNC	ENSG00000182858				267	0	0	156	25	13.8122
RASA1	0	genome.wustl.edu	37	5	86564739	86564740	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8286-01A-12D-2340-08	TCGA-BR-8286-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e0d70de9-86fb-406d-8959-9089f3a44127	8fb6969d-2604-44c5-88ff-6fdd69c9a472	5	86564739	86564740	CT	-	DEL	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	frame_shift_del	c.471_472	p.L159fs	1.000:1.000	NULL	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				125	0	0	29	35	54.6875
