Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
FAM72D	0	genome.wustl.edu	37	1	143912284	143912284	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	143912284	143912284	G	C	SNP	FAM72D	ENST00000400889	human	ensembl	74_37	-1	known	missense	c.12	p.N4K	0.989	NULL	NULL	-	no_errors	FAM72D	HGNC	ENSG00000215784				349	0	0	293	27	8.4375
CA14	0	genome.wustl.edu	37	1	150233945	150233945	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	150233945	150233945	T	G	SNP	CA14	ENST00000369111	human	ensembl	74_37	+1	known	missense	c.164	p.V55G	0.942	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA14	HGNC	ENSG00000118298				49	0	0	103	15	12.7119
TMOD4	0	genome.wustl.edu	37	1	151143000	151143000	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	151143000	151143000	T	G	SNP	TMOD4	ENST00000295314	human	ensembl	74_37	-1	known	missense	c.1010	p.E337A	1.000	NULL	pfam_Tropomodulin	-	no_errors	TMOD4	HGNC	ENSG00000163157				144	0	0	295	19	6.05096
RPTN	0	genome.wustl.edu	37	1	152129286	152129286	+	Silent	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	152129286	152129286	T	G	SNP	RPTN	ENST00000316073	human	ensembl	74_37	-1	known	silent	c.289	p.R97	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	RPTN	HGNC	ENSG00000215853				178	0	0	259	27	9.44056
LCE1B	0	genome.wustl.edu	37	1	152785235	152785235	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	152785235	152785235	T	A	SNP	LCE1B	ENST00000360090	human	ensembl	74_37	+1	known	missense	c.313	p.C105S	0.992	NULL	NULL	-	no_errors	LCE1B	HGNC	ENSG00000196734				68	0	0	92	33	26.4
AQP10	0	genome.wustl.edu	37	1	154295731	154295731	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	154295731	154295731	T	C	SNP	AQP10	ENST00000324978	human	ensembl	74_37	+1	known	missense	c.385	p.Y129H	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_10,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_10,prints_Aquaporin_3,tigrfam_MIP	-	no_errors	AQP10	HGNC	ENSG00000143595				121	0	0	136	36	20.9302
THBS3	0	genome.wustl.edu	37	1	155170258	155170258	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	155170258	155170258	G	A	SNP	THBS3	ENST00000368378	human	ensembl	74_37	-1	known	silent	c.1692	p.N564	0.969	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231				130	0	0	98	179	64.6209
IFI16	0	genome.wustl.edu	37	1	158986333	158986333	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	158986333	158986333	A	C	SNP	IFI16	ENST00000295809	human	ensembl	74_37	+1	known	missense	c.392	p.K131T	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565				27	0	0	38	4	9.52381
OR10J3	0	genome.wustl.edu	37	1	159284068	159284068	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	159284068	159284068	A	G	SNP	OR10J3	ENST00000332217	human	ensembl	74_37	-1	known	missense	c.382	p.C128R	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10J3	HGNC	ENSG00000196266				84	0	0	105	26	19.8473
ATP1B1	0	genome.wustl.edu	37	1	169100726	169100726	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	169100726	169100726	A	C	SNP	ATP1B1	ENST00000367815	human	ensembl	74_37	+1	known	missense	c.845	p.N282T	1.000	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	-	no_errors	ATP1B1	HGNC	ENSG00000143153				90	0	0	97	25	20.4918
PAPPA2	0	genome.wustl.edu	37	1	176668266	176668266	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	176668266	176668266	C	G	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.2777	p.P926R	1.000	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				66	0	0	104	24	18.75
HMCN1	0	genome.wustl.edu	37	1	185966642	185966642	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	185966642	185966642	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.3860	p.P1287Q	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				69	0	0	68	17	20
CYB5R1	0	genome.wustl.edu	37	1	202934388	202934388	+	RNA	SNP	G	G	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	202934388	202934388	G	C	SNP	CYB5R1	ENST00000497655	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYB5R1	HGNC	ENSG00000159348				164	0	0	164	62	27.4336
PIK3C2B	0	genome.wustl.edu	37	1	204438205	204438205	+	Silent	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	204438205	204438205	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	silent	c.726	p.S242	0.050	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				396	0	0	678	120	15.0376
EIF4G3	0	genome.wustl.edu	37	1	21143964	21143964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	21143964	21143964	G	A	SNP	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	missense	c.4286	p.A1429V	0.998	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151				69	0	0	39	10	20.4082
EPHA8	0	genome.wustl.edu	37	1	22913108	22913108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	22913108	22913108	C	T	SNP	EPHA8	ENST00000166244	human	ensembl	74_37	+1	known	missense	c.959	p.P320L	0.999	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886				60	0	0	55	10	15.3846
RYR2	0	genome.wustl.edu	37	1	237580424	237580424	+	Splice_Site	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	237580424	237580424	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	splice_site	c.842+1	e12+1	1.000	-	-	-	no_errors	RYR2	HGNC	ENSG00000198626				24	0	0	7	15	68.1818
OR2T2	0	genome.wustl.edu	37	1	248616764	248616764	+	Silent	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	248616764	248616764	C	T	SNP	OR2T2	ENST00000342927	human	ensembl	74_37	+1	known	silent	c.666	p.I222	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240				46	0	0	25	4	13.7931
MECR	0	genome.wustl.edu	37	1	29527987	29527987	+	RNA	SNP	T	T	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	29527987	29527987	T	A	SNP	MECR	ENST00000453185	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	MECR	HGNC	ENSG00000116353				8	0	0	18	5	21.7391
S100PBP	0	genome.wustl.edu	37	1	33321539	33321539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	33321539	33321539	G	A	SNP	S100PBP	ENST00000373475	human	ensembl	74_37	+1	known	missense	c.1127	p.R376Q	1.000	NULL	NULL	-	no_errors	S100PBP	HGNC	ENSG00000116497				50	0	0	28	16	36.3636
CLDN19	0	genome.wustl.edu	37	1	43205530	43205530	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	43205530	43205530	A	C	SNP	CLDN19	ENST00000296387	human	ensembl	74_37	-1	known	missense	c.205	p.S69A	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN19	HGNC	ENSG00000164007				17	0	0	25	3	10.7143
LRP8	0	genome.wustl.edu	37	1	53712697	53712697	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	53712697	53712697	A	G	SNP	LRP8	ENST00000306052	human	ensembl	74_37	-1	known	missense	c.2885	p.L962P	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193				35	0	0	33	14	29.7872
ELTD1	0	genome.wustl.edu	37	1	79411968	79411968	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	79411968	79411968	C	T	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	missense	c.316	p.V106I	0.560	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618				37	0	0	16	8	33.3333
DPYD	0	genome.wustl.edu	37	1	98186479	98186479	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	98186479	98186479	A	C	SNP	DPYD	ENST00000306031	human	ensembl	74_37	-1	known	missense	c.487	p.L163V	0.000	NULL	superfamily_Helical_ferredxn	-	no_errors	DPYD	HGNC	ENSG00000188641				38	0	0	14	8	36.3636
COX15	0	genome.wustl.edu	37	10	101476185	101476185	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	101476185	101476185	A	G	SNP	COX15	ENST00000016171	human	ensembl	74_37	-1	known	missense	c.1021	p.Y341H	1.000	pfam_HemeA_syn	pfam_HemeA_syn,superfamily_Trypsin-like_Pept_dom	-	no_errors	COX15	HGNC	ENSG00000014919				102	0	0	100	35	25.9259
SORCS1	0	genome.wustl.edu	37	10	108434807	108434807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	108434807	108434807	G	A	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.1940	p.T647I	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				75	0	0	57	22	27.8481
SHOC2	0	genome.wustl.edu	37	10	112769019	112769019	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	112769019	112769019	C	G	SNP	SHOC2	ENST00000369452	human	ensembl	74_37	+1	known	nonsense	c.1298	p.S433*	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	SHOC2	HGNC	ENSG00000108061				24	0	0	15	10	40
USP6NL	0	genome.wustl.edu	37	10	11505655	11505655	+	Silent	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	11505655	11505655	C	T	SNP	USP6NL	ENST00000379237	human	ensembl	74_37	-1	known	silent	c.1341	p.T447	0.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	USP6NL	HGNC	ENSG00000148429				35	0	0	42	8	16
CUBN	0	genome.wustl.edu	37	10	16970303	16970303	+	Splice_Site	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	16970303	16970303	C	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	splice_site	c.6125-1	e41-1	1.000	-	-	-	no_errors	CUBN	HGNC	ENSG00000107611				41	0	0	48	16	25
ARMC4	0	genome.wustl.edu	37	10	28233225	28233225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	28233225	28233225	C	T	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	missense	c.1669	p.E557K	1.000	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126				36	0	0	51	5	8.92857
ANKRD30A	0	genome.wustl.edu	37	10	37508309	37508309	+	Silent	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	37508309	37508309	C	T	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	silent	c.3501	p.F1167	0.296	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513				73	0	0	37	26	41.2698
ANKRD30A	0	genome.wustl.edu	37	10	37508493	37508493	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	37508493	37508493	C	A	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	missense	c.3685	p.Q1229K	0.359	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513				50	0	0	32	16	33.3333
A1CF	0	genome.wustl.edu	37	10	52588038	52588038	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	52588038	52588038	C	A	SNP	A1CF	ENST00000282641	human	ensembl	74_37	-1	known	nonsense	c.622	p.G208*	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	A1CF	HGNC	ENSG00000148584				102	0	0	73	10	12.0482
PCDH15	0	genome.wustl.edu	37	10	55590915	55590915	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	55590915	55590915	T	C	SNP	PCDH15	ENST00000437009	human	ensembl	74_37	-1	known	missense	c.3997	p.R1333G	0.003	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				41	0	0	37	10	21.2766
P4HA1	0	genome.wustl.edu	37	10	74804758	74804758	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	74804758	74804758	G	T	SNP	P4HA1	ENST00000307116	human	ensembl	74_37	-1	known	missense	c.1129	p.H377N	1.000	smart_Pro_4_hyd_alph	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA1	HGNC	ENSG00000122884				75	0	0	58	15	20.5479
NRG3	0	genome.wustl.edu	37	10	83635467	83635467	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	83635467	83635467	C	T	SNP	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	missense	c.371	p.A124V	0.999	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737				32	0	0	30	7	18.9189
NRG3	0	genome.wustl.edu	37	10	84718767	84718767	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	84718767	84718767	T	C	SNP	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	missense	c.1220	p.L407P	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737				46	0	0	54	10	15.625
MUC2	0	genome.wustl.edu	37	11	1093569	1093569	+	Silent	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	1093569	1093569	A	C	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	silent	c.5388	p.T1796	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				29	0	0	51	9	15
MICALCL	0	genome.wustl.edu	37	11	12316167	12316167	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	12316167	12316167	T	A	SNP	MICALCL	ENST00000256186	human	ensembl	74_37	+1	known	missense	c.1189	p.F397I	0.368	smart_ProQ/FinO	pfam_DUF3585,smart_ProQ/FinO	-	no_errors	MICALCL	HGNC	ENSG00000133808				176	0	0	95	22	18.8034
MUC5B	0	genome.wustl.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	1253976	1253976	A	G	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.2050	p.S684G	0.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				13	0	0	28	9	24.3243
OR4C46	0	genome.wustl.edu	37	11	51515532	51515532	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	51515532	51515532	T	C	SNP	OR4C46	ENST00000328188	human	ensembl	74_37	+1	known	missense	c.251	p.L84P	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C46	HGNC	ENSG00000185926				146	0	0	46	71	60.6838
OR4C15	0	genome.wustl.edu	37	11	55322128	55322128	+	Silent	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	55322128	55322128	T	C	SNP	OR4C15	ENST00000314644	human	ensembl	74_37	+1	known	silent	c.346	p.L116	0.023	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939				152	0	0	105	34	24.4604
UBQLNL	0	genome.wustl.edu	37	11	5536964	5536964	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	5536964	5536964	T	G	SNP	UBQLNL	ENST00000380184	human	ensembl	74_37	-1	putative	missense	c.708	p.Q236H	0.997	NULL	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLNL	HGNC	ENSG00000175518				153	0	0	91	43	32.0896
OR5D14	0	genome.wustl.edu	37	11	55563500	55563500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	55563500	55563500	G	A	SNP	OR5D14	ENST00000335605	human	ensembl	74_37	+1	known	missense	c.469	p.G157S	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113				126	0	0	69	19	21.5909
OR5T2	0	genome.wustl.edu	37	11	55999981	55999981	+	Silent	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	55999981	55999981	A	G	SNP	OR5T2	ENST00000313264	human	ensembl	74_37	-1	known	silent	c.681	p.S227	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T2	HGNC	ENSG00000181718				127	0	0	90	27	23.0769
GLYATL2	0	genome.wustl.edu	37	11	58602155	58602155	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	58602155	58602155	A	C	SNP	GLYATL2	ENST00000287275	human	ensembl	74_37	-1	known	missense	c.632	p.L211R	0.011	pfam_Glycine_N-acyltransferase_C,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYATL2	HGNC	ENSG00000156689				56	0	0	33	10	23.2558
OR52L1	0	genome.wustl.edu	37	11	6008074	6008074	+	Silent	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	6008074	6008074	A	G	SNP	OR52L1	ENST00000332249	human	ensembl	74_37	-1	known	silent	c.87	p.S29	0.977	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52L1	HGNC	ENSG00000183313				54	0	0	39	21	35
AIP	0	genome.wustl.edu	37	11	67254509	67254509	+	Silent	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	67254509	67254509	C	T	SNP	AIP	ENST00000279146	human	ensembl	74_37	+1	known	silent	c.132	p.D44	0.021	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	AIP	HGNC	ENSG00000110711				87	0	0	102	17	14.2857
TENM4	0	genome.wustl.edu	37	11	78381433	78381433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	78381433	78381433	G	A	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.5957	p.A1986V	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				32	0	0	28	8	22.2222
FOLH1B	0	genome.wustl.edu	37	11	89429883	89429883	+	RNA	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	89429883	89429883	C	A	SNP	FOLH1B	ENST00000525540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612				34	0	0	13	7	35
MTMR2	0	genome.wustl.edu	37	11	95574830	95574830	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	11	95574830	95574830	G	A	SNP	MTMR2	ENST00000346299	human	ensembl	74_37	-1	known	missense	c.1430	p.S477L	1.000	smart_Tyr_Pase_cat	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR2	HGNC	ENSG00000087053				133	0	0	60	35	36.8421
POLR3B	0	genome.wustl.edu	37	12	106895167	106895167	+	Silent	SNP	A	A	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	12	106895167	106895167	A	T	SNP	POLR3B	ENST00000228347	human	ensembl	74_37	+1	known	silent	c.3051	p.L1017	0.983	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR3B	HGNC	ENSG00000013503				56	0	0	45	15	25
ZCCHC8	0	genome.wustl.edu	37	12	122958719	122958719	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	12	122958719	122958719	G	A	SNP	ZCCHC8	ENST00000336229	human	ensembl	74_37	-1	known	silent	c.1449	p.V483	0.997	NULL	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030				59	0	0	55	19	25.6757
TMEM132D	0	genome.wustl.edu	37	12	129569124	129569124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	12	129569124	129569124	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.1567	p.R523W	1.000	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				32	0	0	35	17	32.6923
CACNA1C	0	genome.wustl.edu	37	12	2794937	2794937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	12	2794937	2794937	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.5822	p.T1941M	0.939	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				50	0	0	39	5	11.3636
KRT74	0	genome.wustl.edu	37	12	52964498	52964498	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	12	52964498	52964498	G	A	SNP	KRT74	ENST00000305620	human	ensembl	74_37	-1	known	silent	c.963	p.I321	0.116	pfam_IF	pfam_IF,prints_Keratin_II	-	no_errors	KRT74	HGNC	ENSG00000170484				44	0	0	48	21	30.4348
EPYC	0	genome.wustl.edu	37	12	91371910	91371910	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	12	91371910	91371910	G	A	SNP	EPYC	ENST00000261172	human	ensembl	74_37	-1	known	nonsense	c.295	p.Q99*	0.988	NULL	pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	EPYC	HGNC	ENSG00000083782				70	0	0	56	16	22.2222
FRY	0	genome.wustl.edu	37	13	32798522	32798522	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	13	32798522	32798522	G	T	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.4916	p.R1639M	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				48	0	0	30	11	26.8293
TNFSF11	0	genome.wustl.edu	37	13	43148629	43148629	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	13	43148629	43148629	G	A	SNP	TNFSF11	ENST00000239849	human	ensembl	74_37	+1	known	missense	c.190	p.V64I	1.000	pirsf_TNF_ligand_10/11	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	-	no_errors	TNFSF11	HGNC	ENSG00000120659				20	0	0	23	4	14.8148
UTP14C	0	genome.wustl.edu	37	13	52603712	52603712	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	13	52603712	52603712	G	C	SNP	UTP14C	ENST00000521776	human	ensembl	74_37	+1	known	missense	c.772	p.G258R	0.995	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14C	HGNC	ENSG00000253797				73	0	0	72	7	8.86076
AHNAK2	0	genome.wustl.edu	37	14	105414728	105414728	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	14	105414728	105414728	G	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.7060	p.L2354I	0.001	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				208	0	0	271	123	31.2183
OR4K5	0	genome.wustl.edu	37	14	20388855	20388855	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	14	20388855	20388855	C	A	SNP	OR4K5	ENST00000315915	human	ensembl	74_37	+1	known	missense	c.90	p.F30L	0.002	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K5	HGNC	ENSG00000176281				137	0	0	96	13	11.9266
OR4K15	0	genome.wustl.edu	37	14	20444306	20444306	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	14	20444306	20444306	A	C	SNP	OR4K15	ENST00000305051	human	ensembl	74_37	+1	known	missense	c.629	p.K210T	0.099	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K15	HGNC	ENSG00000169488				190	0	0	143	26	15.3846
TOX4	0	genome.wustl.edu	37	14	21955783	21955783	+	Silent	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	14	21955783	21955783	C	T	SNP	TOX4	ENST00000262709	human	ensembl	74_37	+1	known	silent	c.249	p.D83	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX4	HGNC	ENSG00000092203				94	0	0	106	26	19.697
PRKD1	0	genome.wustl.edu	37	14	30093429	30093429	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	14	30093429	30093429	T	A	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	nonsense	c.1834	p.K612*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				92	0	0	73	11	13.0952
KIAA0586	0	genome.wustl.edu	37	14	58955445	58955445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	14	58955445	58955445	G	A	SNP	KIAA0586	ENST00000556134	human	ensembl	74_37	+1	known	missense	c.3589	p.A1197T	0.004	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578				58	0	0	17	23	57.5
SIX4	0	genome.wustl.edu	37	14	61190154	61190154	+	Silent	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	14	61190154	61190154	T	C	SNP	SIX4	ENST00000216513	human	ensembl	74_37	-1	known	silent	c.639	p.K213	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX4	HGNC	ENSG00000100625				22	0	0	12	19	61.2903
SYNE2	0	genome.wustl.edu	37	14	64596767	64596767	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	14	64596767	64596767	A	G	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.14141	p.D4714G	0.996	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				44	0	0	42	10	19.2308
ADAM21	0	genome.wustl.edu	37	14	70925003	70925003	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	14	70925003	70925003	C	A	SNP	ADAM21	ENST00000267499	human	ensembl	74_37	+1	known	missense	c.787	p.Q263K	0.215	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985				65	0	0	26	20	43.4783
UNC79	0	genome.wustl.edu	37	14	94044270	94044270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	14	94044270	94044270	G	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.2294	p.R765Q	1.000	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				200	1	0.497512	174	32	15.534
LRRK1	0	genome.wustl.edu	37	15	101528929	101528929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	15	101528929	101528929	C	T	SNP	LRRK1	ENST00000388948	human	ensembl	74_37	+1	known	missense	c.524	p.T175M	0.771	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237				76	0	0	52	22	29.7297
CATSPER2P1	0	genome.wustl.edu	37	15	44036757	44036757	+	RNA	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	15	44036757	44036757	C	T	SNP	CATSPER2P1	ENST00000381680	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CATSPER2P1	HGNC	ENSG00000205771				62	0	0	42	9	17.6471
SLC12A1	0	genome.wustl.edu	37	15	48559802	48559802	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	15	48559802	48559802	G	A	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	silent	c.2199	p.A733	0.680	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				80	0	0	38	11	22.449
SECISBP2L	0	genome.wustl.edu	37	15	49308888	49308888	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	15	49308888	49308888	G	A	SNP	SECISBP2L	ENST00000559471	human	ensembl	74_37	-1	known	missense	c.1430	p.S477L	1.000	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593				37	0	0	12	6	33.3333
MYO5A	0	genome.wustl.edu	37	15	52613705	52613705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	15	52613705	52613705	C	T	SNP	MYO5A	ENST00000358212	human	ensembl	74_37	-1	known	missense	c.4802	p.G1601D	1.000	pfscan_Dilute	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535				106	0	0	65	17	20.7317
DPP8	0	genome.wustl.edu	37	15	65739344	65739344	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	15	65739344	65739344	T	A	SNP	DPP8	ENST00000341861	human	ensembl	74_37	-1	known	missense	c.2575	p.I859F	1.000	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP8	HGNC	ENSG00000074603				77	0	0	28	15	34.8837
NTRK3	0	genome.wustl.edu	37	15	88680715	88680715	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	15	88680715	88680715	T	C	SNP	NTRK3	ENST00000360948	human	ensembl	74_37	-1	known	missense	c.542	p.K181R	0.001	smart_Cys-rich_flank_reg_C	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538				40	0	0	28	10	26.3158
ZNF710	0	genome.wustl.edu	37	15	90616324	90616324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	15	90616324	90616324	G	A	SNP	ZNF710	ENST00000268154	human	ensembl	74_37	+1	known	missense	c.1480	p.E494K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548				48	0	0	32	10	23.8095
HS3ST4	0	genome.wustl.edu	37	16	26147533	26147533	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	16	26147533	26147533	A	C	SNP	HS3ST4	ENST00000331351	human	ensembl	74_37	+1	known	missense	c.1335	p.Q445H	0.993	superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST4	HGNC	ENSG00000182601				29	0	0	23	3	11.5385
SETD1A	0	genome.wustl.edu	37	16	30982811	30982811	+	Silent	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	16	30982811	30982811	C	A	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	silent	c.3129	p.S1043	0.676	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				92	0	0	57	4	6.55738
ZNF646	0	genome.wustl.edu	37	16	31089848	31089848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	16	31089848	31089848	G	A	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.2203	p.E735K	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				103	0	0	91	22	19.469
CNOT1	0	genome.wustl.edu	37	16	58633182	58633182	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	16	58633182	58633182	T	G	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.60	p.L20F	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				74	0	0	26	12	31.5789
RLTPR	0	genome.wustl.edu	37	16	67688536	67688536	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	16	67688536	67688536	T	A	SNP	RLTPR	ENST00000334583	human	ensembl	74_37	+1	known	missense	c.3523	p.Y1175N	0.973	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753				32	0	0	23	6	20.6897
ANKRD11	0	genome.wustl.edu	37	16	89351933	89351933	+	Silent	SNP	G	G	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	16	89351933	89351933	G	C	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	silent	c.1017	p.A339	0.003	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				114	0	0	96	20	17.2414
RPL23A	0	genome.wustl.edu	37	17	27047880	27047880	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	17	27047880	27047880	C	G	SNP	RPL23A	ENST00000422514	human	ensembl	74_37	+1	known	missense	c.181	p.P61A	1.000	pfam_Ribosomal_L23/L25_N	pfam_Ribosomal_L23/L25_N,pfam_Ribosomal_L25/23,superfamily_Ribosomal_L23/L15e_core_dom,tigrfam_Ribosomal_L23	-	no_errors	RPL23A	HGNC	ENSG00000198242				60	0	0	59	39	39.7959
MIEN1	0	genome.wustl.edu	37	17	37886535	37886535	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	17	37886535	37886535	G	T	SNP	MIEN1	ENST00000394231	human	ensembl	74_37	-1	known	nonsense	c.99	p.C33*	1.000	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	-	no_errors	MIEN1	HGNC	ENSG00000141741				15	0	0	46	4	8
UNK	0	genome.wustl.edu	37	17	73820418	73820418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	17	73820418	73820418	G	A	SNP	UNK	ENST00000293218	human	ensembl	74_37	+1	known	missense	c.2581	p.A861T	0.544	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	UNK	HGNC	ENSG00000132478				8	0	0	9	21	70
CDK3	0	genome.wustl.edu	37	17	73997514	73997514	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	17	73997514	73997514	T	C	SNP	CDK3	ENST00000425876	human	ensembl	74_37	+1	known	missense	c.8	p.M3T	0.991	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK3	HGNC	ENSG00000250506				65	0	0	15	67	81.7073
SEC14L1	0	genome.wustl.edu	37	17	75196731	75196731	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	17	75196731	75196731	G	T	SNP	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	nonsense	c.985	p.G329*	0.999	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				114	0	0	107	47	30.5195
SEC14L1	0	genome.wustl.edu	37	17	75208180	75208180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	17	75208180	75208180	C	T	SNP	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	missense	c.1760	p.P587L	0.968	superfamily_GOLD,pfscan_GOLD	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				274	0	0	220	101	31.4642
TP53	0	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				23	0	0	13	6	31.5789
CHD3	0	genome.wustl.edu	37	17	7802338	7802338	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	17	7802338	7802338	A	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	nonsense	c.2161	p.K721*	1.000	superfamily_P-loop_NTPase	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				98	0	0	63	13	17.1053
TIMM22	0	genome.wustl.edu	37	17	900492	900492	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	17	900492	900492	G	T	SNP	TIMM22	ENST00000327158	human	ensembl	74_37	+1	known	missense	c.110	p.R37L	1.000	NULL	pfam_Tim17/Tim22/Tim23/PMP24	-	no_errors	TIMM22	HGNC	ENSG00000177370				37	0	0	32	2	5.88235
EPB41L3	0	genome.wustl.edu	37	18	5398038	5398038	+	Silent	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	18	5398038	5398038	A	C	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	silent	c.2454	p.T818	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				217	1	0.458716	71	34	32.381
ZNF844	0	genome.wustl.edu	37	19	12184935	12184935	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	12184935	12184935	A	C	SNP	ZNF844	ENST00000439326	human	ensembl	74_37	+1	known	missense	c.93	p.E31D	0.953	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF844	HGNC	ENSG00000223547				103	0	0	47	43	47.7778
KLF1	0	genome.wustl.edu	37	19	12997936	12997936	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	12997936	12997936	C	T	SNP	KLF1	ENST00000264834	human	ensembl	74_37	-1	known	missense	c.19	p.A7T	0.073	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF1	HGNC	ENSG00000105610				61	0	0	42	17	28.8136
CD97	0	genome.wustl.edu	37	19	14517953	14517953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	14517953	14517953	G	A	SNP	CD97	ENST00000242786	human	ensembl	74_37	+1	known	missense	c.2288	p.R763Q	0.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146				105	0	0	97	19	16.3793
ZNF737	0	genome.wustl.edu	37	19	20728483	20728483	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	20728483	20728483	T	C	SNP	ZNF737	ENST00000427401	human	ensembl	74_37	-1	known	missense	c.526	p.I176V	0.006	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440				35	0	0	19	10	34.4828
PLEKHF1	0	genome.wustl.edu	37	19	30165082	30165082	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	30165082	30165082	G	A	SNP	PLEKHF1	ENST00000436066	human	ensembl	74_37	+1	known	silent	c.336	p.S112	0.028	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_Znf_FYVE_PHD,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel	-	no_errors	PLEKHF1	HGNC	ENSG00000166289				45	0	0	118	11	8.52713
LRP3	0	genome.wustl.edu	37	19	33696647	33696647	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	33696647	33696647	C	T	SNP	LRP3	ENST00000253193	human	ensembl	74_37	+1	known	missense	c.971	p.T324M	0.961	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP3	HGNC	ENSG00000130881				11	0	0	13	6	31.5789
NFKBID	0	genome.wustl.edu	37	19	36386962	36386962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	36386962	36386962	G	A	SNP	NFKBID	ENST00000352614	human	ensembl	74_37	-1	known	missense	c.982	p.R328W	0.014	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NFKBID	HGNC	ENSG00000167604				94	0	0	65	31	32.2917
ZNF573	0	genome.wustl.edu	37	19	38229531	38229531	+	Silent	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	38229531	38229531	A	G	SNP	ZNF573	ENST00000590414	human	ensembl	74_37	-1	known	silent	c.1860	p.S620	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF573	HGNC	ENSG00000189144				106	0	0	55	28	33.7349
CYP2A7	0	genome.wustl.edu	37	19	41384726	41384726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	41384726	41384726	C	T	SNP	CYP2A7	ENST00000301146	human	ensembl	74_37	-1	known	missense	c.770	p.R257H	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2B-like	-	no_errors	CYP2A7	HGNC	ENSG00000198077				46	0	0	43	10	18.8679
MARK4	0	genome.wustl.edu	37	19	45801008	45801008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	45801008	45801008	G	A	SNP	MARK4	ENST00000262891	human	ensembl	74_37	+1	known	missense	c.1673	p.R558H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	MARK4	HGNC	ENSG00000007047				8	0	0	12	10	45.4545
CCDC155	0	genome.wustl.edu	37	19	49913073	49913073	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	49913073	49913073	G	A	SNP	CCDC155	ENST00000447857	human	ensembl	74_37	+1	known	missense	c.1210	p.V404I	0.009	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609				84	0	0	28	21	42.8571
PPP2R1A	0	genome.wustl.edu	37	19	52722958	52722958	+	Silent	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	52722958	52722958	G	T	SNP	PPP2R1A	ENST00000322088	human	ensembl	74_37	+1	known	silent	c.1143	p.R381	0.996	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568				61	0	0	44	22	33.3333
EPS8L1	0	genome.wustl.edu	37	19	55597230	55597230	+	Silent	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	55597230	55597230	A	G	SNP	EPS8L1	ENST00000201647	human	ensembl	74_37	+1	known	silent	c.1407	p.E469	0.019	superfamily_SH3_domain	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037				87	0	0	87	22	20.1835
ZNF71	0	genome.wustl.edu	37	19	57132977	57132977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	57132977	57132977	G	A	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	missense	c.322	p.G108S	0.011	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				49	0	0	61	17	21.7949
PEG3	0	genome.wustl.edu	37	19	57333083	57333083	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	57333083	57333083	T	G	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.605	p.K202T	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				180	0	0	133	21	13.6364
ZNF417	0	genome.wustl.edu	37	19	58420576	58420576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	58420576	58420576	C	T	SNP	ZNF417	ENST00000312026	human	ensembl	74_37	-1	known	missense	c.1070	p.C357Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480				160	0	0	106	46	30.2632
DENND1C	0	genome.wustl.edu	37	19	6475579	6475579	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	6475579	6475579	G	A	SNP	DENND1C	ENST00000381480	human	ensembl	74_37	-1	known	silent	c.843	p.A281	0.235	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744				85	0	0	51	22	30.137
C3	0	genome.wustl.edu	37	19	6707204	6707204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	6707204	6707204	G	A	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.2128	p.R710W	0.913	pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				38	0	0	28	12	30
ADAMTS10	0	genome.wustl.edu	37	19	8660758	8660758	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	8660758	8660758	C	T	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	missense	c.1367	p.R456Q	0.998	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				156	0	0	103	33	24.2647
MUC16	0	genome.wustl.edu	37	19	9061337	9061337	+	Silent	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	9061337	9061337	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.26109	p.T8703	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				62	0	0	40	23	36.5079
MUC16	0	genome.wustl.edu	37	19	9061989	9061989	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	9061989	9061989	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.25457	p.I8486S	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				257	0	0	176	70	28.4553
ZC3H6	0	genome.wustl.edu	37	2	113088967	113088967	+	Silent	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	113088967	113088967	T	C	SNP	ZC3H6	ENST00000343936	human	ensembl	74_37	+1	known	silent	c.2472	p.D824	0.960	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177				119	0	0	76	43	36.1345
ARHGEF4	0	genome.wustl.edu	37	2	131797714	131797714	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	131797714	131797714	G	T	SNP	ARHGEF4	ENST00000326016	human	ensembl	74_37	+1	known	missense	c.873	p.E291D	1.000	pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002				25	0	0	41	3	6.81818
TUBA3D	0	genome.wustl.edu	37	2	132240311	132240311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	132240311	132240311	G	A	SNP	TUBA3D	ENST00000321253	human	ensembl	74_37	+1	known	missense	c.1243	p.E415K	1.000	superfamily_Tub_FtsZ_C,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886				248	0	0	226	20	8.13008
NCKAP5	0	genome.wustl.edu	37	2	133540288	133540288	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	133540288	133540288	T	G	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.4096	p.S1366R	0.996	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				48	0	0	59	15	20.2703
LRP1B	0	genome.wustl.edu	37	2	141208232	141208232	+	Splice_Site	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	141208232	141208232	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	splice_site	c.9964-2	e63-2	1.000	-	-	-	no_errors	LRP1B	HGNC	ENSG00000168702				43	0	0	15	9	37.5
PXDN	0	genome.wustl.edu	37	2	1652664	1652664	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	1652664	1652664	T	C	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.2888	p.E963G	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				15	0	0	4	25	86.2069
SCN3A	0	genome.wustl.edu	37	2	165952151	165952151	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	165952151	165952151	A	C	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	missense	c.4301	p.L1434R	0.998	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				55	0	0	19	6	24
TTN	0	genome.wustl.edu	37	2	179428834	179428834	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	179428834	179428834	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.74321	p.T24774N	0.992	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				193	0	0	120	40	25
GTF3C3	0	genome.wustl.edu	37	2	197656104	197656104	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	197656104	197656104	T	G	SNP	GTF3C3	ENST00000263956	human	ensembl	74_37	-1	known	missense	c.492	p.E164D	0.999	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041				82	0	0	34	19	35.8491
NIF3L1	0	genome.wustl.edu	37	2	201757042	201757042	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	201757042	201757042	C	T	SNP	NIF3L1	ENST00000409020	human	ensembl	74_37	+1	known	missense	c.376	p.P126S	1.000	pfam_Interacting_NIF3,superfamily_Interacting_NIF3,pirsf_UCP037490_NIF3_euk,tigrfam_Interacting_NIF3	pfam_Interacting_NIF3,superfamily_Interacting_NIF3,pirsf_UCP037490_NIF3_euk,tigrfam_Interacting_NIF3	-	no_errors	NIF3L1	HGNC	ENSG00000196290				77	0	0	54	27	33.3333
ZDBF2	0	genome.wustl.edu	37	2	207171207	207171207	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	207171207	207171207	A	C	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.1955	p.K652T	0.115	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				76	0	0	57	13	18.5714
ZDBF2	0	genome.wustl.edu	37	2	207171930	207171930	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	207171930	207171930	A	G	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.2678	p.K893R	0.005	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				60	0	0	37	13	26
ZDBF2	0	genome.wustl.edu	37	2	207172948	207172948	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	207172948	207172948	A	C	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.3696	p.E1232D	0.954	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				31	0	0	41	13	24.0741
SERPINE2	0	genome.wustl.edu	37	2	224847456	224847456	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	224847456	224847456	T	G	SNP	SERPINE2	ENST00000258405	human	ensembl	74_37	-1	known	missense	c.927	p.K309N	0.674	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINE2	HGNC	ENSG00000135919				45	0	0	28	11	28.2051
DOCK10	0	genome.wustl.edu	37	2	225659637	225659637	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	225659637	225659637	T	C	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.5113	p.S1705G	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905				78	0	0	65	25	27.7778
COL4A3	0	genome.wustl.edu	37	2	228135486	228135486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	228135486	228135486	G	A	SNP	COL4A3	ENST00000396578	human	ensembl	74_37	+1	known	missense	c.1576	p.G526S	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031				33	0	0	40	10	20
PSMD1	0	genome.wustl.edu	37	2	231931790	231931790	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	231931790	231931790	A	T	SNP	PSMD1	ENST00000308696	human	ensembl	74_37	+1	known	nonsense	c.475	p.R159*	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692				23	0	0	15	13	46.4286
PER2	0	genome.wustl.edu	37	2	239186565	239186565	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	239186565	239186565	C	T	SNP	PER2	ENST00000254657	human	ensembl	74_37	-1	known	missense	c.13	p.A5T	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326				25	0	0	25	4	13.7931
DZANK1	0	genome.wustl.edu	37	20	18407803	18407803	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	20	18407803	18407803	C	A	SNP	DZANK1	ENST00000262547	human	ensembl	74_37	-1	known	nonsense	c.862	p.E288*	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DZANK1	HGNC	ENSG00000089091				31	0	0	13	10	43.4783
C20orf26	0	genome.wustl.edu	37	20	20232238	20232238	+	Splice_Site	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	20	20232238	20232238	G	T	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	splice_site	c.2160-1	e19-1	1.000	-	-	-	no_errors	C20orf26	HGNC	ENSG00000089101				101	0	0	70	10	12.5
HCK	0	genome.wustl.edu	37	20	30671801	30671801	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	20	30671801	30671801	C	T	SNP	HCK	ENST00000375852	human	ensembl	74_37	+1	known	nonsense	c.637	p.R213*	0.205	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	HCK	HGNC	ENSG00000101336				57	0	0	90	28	23.7288
ADAM33	0	genome.wustl.edu	37	20	3652266	3652266	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	20	3652266	3652266	C	A	SNP	ADAM33	ENST00000356518	human	ensembl	74_37	-1	known	missense	c.1867	p.G623C	1.000	smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451				9	0	0	16	3	15.7895
FAM83D	0	genome.wustl.edu	37	20	37580424	37580424	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	20	37580424	37580424	C	G	SNP	FAM83D	ENST00000217429	human	ensembl	74_37	+1	known	missense	c.1109	p.T370S	0.986	NULL	pfam_DUF1669	-	no_errors	FAM83D	HGNC	ENSG00000101447				109	0	0	188	21	10.0478
ZNF335	0	genome.wustl.edu	37	20	44587884	44587884	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	20	44587884	44587884	T	G	SNP	ZNF335	ENST00000322927	human	ensembl	74_37	-1	known	missense	c.2209	p.S737R	0.090	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026				69	0	0	81	29	26.3636
IGHV1OR21-1	0	genome.wustl.edu	37	21	10862949	10862949	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	21	10862949	10862949	A	C	SNP	IGHV1OR21-1	ENST00000559480	human	ensembl	74_37	+1	known	missense	c.245	p.K82T	0.002	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGHV1OR21-1	HGNC	ENSG00000169861				345	0	0	257	52	16.8285
TPTE	0	genome.wustl.edu	37	21	10944719	10944719	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	21	10944719	10944719	A	C	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	missense	c.515	p.V172G	0.371	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				227	0	0	84	17	16.8317
KRTAP13-2	0	genome.wustl.edu	37	21	31744089	31744089	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	21	31744089	31744089	C	T	SNP	KRTAP13-2	ENST00000399889	human	ensembl	74_37	-1	known	missense	c.443	p.R148H	0.000	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP13-2	HGNC	ENSG00000182816				62	0	0	28	43	60.5634
PCNT	0	genome.wustl.edu	37	21	47776997	47776997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	21	47776997	47776997	C	T	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.2045	p.S682L	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				77	0	0	22	18	45
MICAL3	0	genome.wustl.edu	37	22	18310439	18310439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	22	18310439	18310439	G	A	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	missense	c.3164	p.A1055V	0.007	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				8	0	0	7	9	56.25
UPB1	0	genome.wustl.edu	37	22	24891382	24891382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	22	24891382	24891382	C	T	SNP	UPB1	ENST00000326010	human	ensembl	74_37	+1	known	missense	c.11	p.A4V	0.005	NULL	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	UPB1	HGNC	ENSG00000100024				72	0	0	66	34	34
PES1	0	genome.wustl.edu	37	22	30977576	30977576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	22	30977576	30977576	G	A	SNP	PES1	ENST00000354694	human	ensembl	74_37	-1	known	missense	c.686	p.T229M	1.000	pfam_Pescadillo	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029				28	0	0	21	15	41.6667
APOBEC3B	0	genome.wustl.edu	37	22	39387489	39387489	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	22	39387489	39387489	A	G	SNP	APOBEC3B	ENST00000335760	human	ensembl	74_37	+1	known	missense	c.722	p.K241R	0.000	NULL	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3B	HGNC	ENSG00000179750				175	0	0	151	34	18.3784
BOC	0	genome.wustl.edu	37	3	113005559	113005559	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	3	113005559	113005559	G	C	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	missense	c.3198	p.E1066D	0.991	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				260	1	0.383142	187	14	6.96517
CLSTN2	0	genome.wustl.edu	37	3	140280993	140280993	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	3	140280993	140280993	A	C	SNP	CLSTN2	ENST00000458420	human	ensembl	74_37	+1	known	missense	c.2055	p.E685D	0.004	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258				48	0	0	22	7	24.1379
IGSF10	0	genome.wustl.edu	37	3	151166629	151166629	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	3	151166629	151166629	C	G	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.1140	p.L380F	0.307	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				63	0	0	36	12	25
C3orf79	0	genome.wustl.edu	37	3	153220203	153220203	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	3	153220203	153220203	C	T	SNP	C3orf79	ENST00000446603	human	ensembl	74_37	+1	known	nonsense	c.235	p.Q79*	0.000	NULL	NULL	-	no_errors	C3orf79	HGNC	ENSG00000237787				79	0	0	49	7	12.5
MLF1	0	genome.wustl.edu	37	3	158315949	158315949	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	3	158315949	158315949	G	A	SNP	MLF1	ENST00000392822	human	ensembl	74_37	+1	known	silent	c.453	p.P151	0.684	pfam_Myeloid_leukemia_factor	pfam_Myeloid_leukemia_factor	-	no_errors	MLF1	HGNC	ENSG00000178053				62	0	0	46	24	34.2857
GFM1	0	genome.wustl.edu	37	3	158364655	158364655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	3	158364655	158364655	G	A	SNP	GFM1	ENST00000486715	human	ensembl	74_37	+1	known	missense	c.491	p.R164H	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827				50	0	0	26	35	57.377
SLITRK3	0	genome.wustl.edu	37	3	164905717	164905717	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	3	164905717	164905717	C	G	SNP	SLITRK3	ENST00000241274	human	ensembl	74_37	-1	known	missense	c.2902	p.E968Q	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871				139	0	0	160	17	9.60452
LINC00969	0	genome.wustl.edu	37	3	195412596	195412596	+	RNA	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	3	195412596	195412596	A	G	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				24	0	0	30	7	18.9189
QARS	0	genome.wustl.edu	37	3	49136421	49136421	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	3	49136421	49136421	G	A	SNP	QARS	ENST00000306125	human	ensembl	74_37	-1	known	missense	c.1760	p.S587F	0.981	pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,tigrfam_Gln-tRNA-synth	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth,tigrfam_Gln-tRNA-synth	-	no_errors	QARS	HGNC	ENSG00000172053				52	0	0	35	12	25.5319
SNTN	0	genome.wustl.edu	37	3	63645500	63645500	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	3	63645500	63645500	C	G	SNP	SNTN	ENST00000343837	human	ensembl	74_37	+1	known	missense	c.245	p.A82G	1.000	NULL	NULL	-	no_errors	SNTN	HGNC	ENSG00000188817				111	0	0	51	17	25
MXD4	0	genome.wustl.edu	37	4	2252845	2252845	+	Silent	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	4	2252845	2252845	C	T	SNP	MXD4	ENST00000337190	human	ensembl	74_37	-1	known	silent	c.438	p.T146	0.422	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXD4	HGNC	ENSG00000123933				9	0	0	2	10	83.3333
KLF3	0	genome.wustl.edu	37	4	38696529	38696529	+	Splice_Site	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	4	38696529	38696529	T	C	SNP	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	splice_site	c.856+2	e4+2	1.000	-	-	-	no_errors	KLF3	HGNC	ENSG00000109787				72	0	0	18	18	50
GABRA2	0	genome.wustl.edu	37	4	46307630	46307630	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	4	46307630	46307630	G	T	SNP	GABRA2	ENST00000540012	human	ensembl	74_37	-1	known	missense	c.493	p.L165M	0.998	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa2_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA2	HGNC	ENSG00000151834				60	0	0	13	8	38.0952
GABRA4	0	genome.wustl.edu	37	4	46930536	46930536	+	Silent	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	4	46930536	46930536	A	C	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	silent	c.1371	p.T457	0.082	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				73	0	0	24	25	51.0204
ADAMTS3	0	genome.wustl.edu	37	4	73280572	73280572	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	4	73280572	73280572	T	G	SNP	ADAMTS3	ENST00000286657	human	ensembl	74_37	-1	known	missense	c.621	p.E207D	0.341	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS3	HGNC	ENSG00000156140				62	0	0	20	14	41.1765
PRKG2	0	genome.wustl.edu	37	4	82090920	82090920	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	4	82090920	82090920	T	C	SNP	PRKG2	ENST00000264399	human	ensembl	74_37	-1	known	missense	c.745	p.I249V	0.102	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669				49	0	0	19	11	36.6667
GIN1	0	genome.wustl.edu	37	5	102432413	102432413	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	102432413	102432413	T	G	SNP	GIN1	ENST00000399004	human	ensembl	74_37	-1	known	missense	c.1126	p.N376H	1.000	NULL	pfam_Integrase_cat-core,pfam_Znf_H2C2_histone_UAS-bd,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	GIN1	HGNC	ENSG00000145723				226	0	0	118	17	12.5926
EPB41L4A	0	genome.wustl.edu	37	5	111541193	111541193	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	111541193	111541193	T	C	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	missense	c.1187	p.K396R	1.000	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				310	0	0	168	46	21.4953
PCDHA10	0	genome.wustl.edu	37	5	140237119	140237119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	140237119	140237119	C	T	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	missense	c.1486	p.R496W	0.972	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120				153	0	0	149	38	20.3209
PCDHB8	0	genome.wustl.edu	37	5	140559406	140559406	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	140559406	140559406	G	A	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	silent	c.1791	p.S597	0.956	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				53	0	0	50	13	20.6349
GABRA6	0	genome.wustl.edu	37	5	161113276	161113276	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	161113276	161113276	T	G	SNP	GABRA6	ENST00000274545	human	ensembl	74_37	+1	known	missense	c.79	p.F27V	0.990	prints_GABBAa6_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863				72	0	0	50	11	18.0328
C5orf58	0	genome.wustl.edu	37	5	169673139	169673139	+	RNA	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	169673139	169673139	C	A	SNP	C5orf58	ENST00000518395	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	C5orf58	HGNC	ENSG00000234511				35	0	0	26	7	21.2121
LMAN2	0	genome.wustl.edu	37	5	176765499	176765499	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	176765499	176765499	G	A	SNP	LMAN2	ENST00000303127	human	ensembl	74_37	-1	known	silent	c.423	p.R141	1.000	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	-	no_errors	LMAN2	HGNC	ENSG00000169223				132	0	0	53	52	49.5238
ZNF454	0	genome.wustl.edu	37	5	178392185	178392185	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	178392185	178392185	G	A	SNP	ZNF454	ENST00000320129	human	ensembl	74_37	+1	known	silent	c.780	p.T260	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF454	HGNC	ENSG00000178187				109	0	0	53	17	24.2857
CDH12	0	genome.wustl.edu	37	5	21755799	21755799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	21755799	21755799	C	T	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.1786	p.G596S	1.000	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				62	0	0	46	14	23.3333
CDH10	0	genome.wustl.edu	37	5	24491771	24491771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	24491771	24491771	G	A	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.1790	p.S597F	1.000	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				51	0	0	58	10	14.7059
CDH9	0	genome.wustl.edu	37	5	26988365	26988365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	26988365	26988365	C	T	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.76	p.E26K	0.718	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				57	0	0	33	16	32.6531
KIAA0947	0	genome.wustl.edu	37	5	5464018	5464018	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	5464018	5464018	A	C	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	missense	c.4571	p.Q1524P	0.039	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				29	0	0	19	24	55.814
NLN	0	genome.wustl.edu	37	5	65073295	65073295	+	Silent	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	65073295	65073295	A	G	SNP	NLN	ENST00000380985	human	ensembl	74_37	+1	known	silent	c.492	p.R164	1.000	NULL	pfam_Pept_M3A_M3B	-	no_errors	NLN	HGNC	ENSG00000123213				123	0	0	45	25	35.7143
AP3B1	0	genome.wustl.edu	37	5	77334987	77334987	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	77334987	77334987	C	G	SNP	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	missense	c.2689	p.D897H	1.000	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				57	0	0	29	10	25.641
GPR98	0	genome.wustl.edu	37	5	89979689	89979689	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	5	89979689	89979689	A	C	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.5951	p.K1984T	0.987	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				23	0	0	10	4	28.5714
CCNC	0	genome.wustl.edu	37	6	100010763	100010763	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	100010763	100010763	G	C	SNP	CCNC	ENST00000520429	human	ensembl	74_37	-1	known	missense	c.94	p.L32V	1.000	superfamily_Cyclin-like,pirsf_CyclinC	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_CyclinC	-	no_errors	CCNC	HGNC	ENSG00000112237				33	0	0	32	6	15.7895
MCHR2	0	genome.wustl.edu	37	6	100390875	100390875	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	100390875	100390875	G	A	SNP	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	silent	c.537	p.D179	0.399	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_MCH_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034				119	0	0	137	20	12.7389
RFPL4B	0	genome.wustl.edu	37	6	112671505	112671505	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	112671505	112671505	C	A	SNP	RFPL4B	ENST00000441065	human	ensembl	74_37	+1	known	missense	c.595	p.P199T	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL4B	HGNC	ENSG00000251258				59	0	0	62	30	32.6087
TSPYL1	0	genome.wustl.edu	37	6	116600397	116600397	+	Silent	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	116600397	116600397	A	G	SNP	TSPYL1	ENST00000368608	human	ensembl	74_37	-1	known	silent	c.597	p.G199	0.031	NULL	pfam_NAP_family	-	no_errors	TSPYL1	HGNC	ENSG00000189241				27	0	0	60	4	6.25
KIAA0408	0	genome.wustl.edu	37	6	127768551	127768551	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	127768551	127768551	T	G	SNP	KIAA0408	ENST00000483725	human	ensembl	74_37	-1	novel	missense	c.913	p.S305R	0.000	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367				86	0	0	91	10	9.90099
BCLAF1	0	genome.wustl.edu	37	6	136596730	136596730	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	136596730	136596730	T	C	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.1792	p.S598G	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				171	0	0	161	15	8.52273
SYNE1	0	genome.wustl.edu	37	6	152651701	152651701	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	152651701	152651701	C	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	nonsense	c.14119	p.E4707*	0.376	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				43	0	0	47	16	25.3968
HIST1H3J	0	genome.wustl.edu	37	6	27858243	27858243	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	27858243	27858243	G	C	SNP	HIST1H3J	ENST00000359303	human	ensembl	74_37	-1	known	missense	c.328	p.L110V	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3J	HGNC	ENSG00000197153				75	0	0	66	28	29.7872
HLA-A	0	genome.wustl.edu	37	6	29910607	29910607	+	Silent	SNP	G	G	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	29910607	29910607	G	C	SNP	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	silent	c.147	p.V49	0.021	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				34	0	0	54	7	11.4754
HLA-A	0	genome.wustl.edu	37	6	29910622	29910622	+	Silent	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	29910622	29910622	C	T	SNP	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	silent	c.162	p.D54	1.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				34	0	0	52	10	16.129
VARS	0	genome.wustl.edu	37	6	31748259	31748259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	31748259	31748259	G	A	SNP	VARS	ENST00000375663	human	ensembl	74_37	-1	known	missense	c.2884	p.R962C	0.982	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS	HGNC	ENSG00000204394				56	0	0	80	17	17.5258
TULP1	0	genome.wustl.edu	37	6	35478785	35478785	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	35478785	35478785	C	A	SNP	TULP1	ENST00000229771	human	ensembl	74_37	-1	known	nonsense	c.352	p.E118*	0.625	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	-	no_errors	TULP1	HGNC	ENSG00000112041				107	0	0	129	22	14.5695
TDRD6	0	genome.wustl.edu	37	6	46657864	46657864	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	46657864	46657864	A	G	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	missense	c.1999	p.K667E	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				42	0	0	38	14	26.9231
MB21D1	0	genome.wustl.edu	37	6	74161872	74161872	+	Silent	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	74161872	74161872	T	C	SNP	MB21D1	ENST00000370315	human	ensembl	74_37	-1	known	silent	c.33	p.R11	0.000	NULL	pfam_Mab-21_dom	-	no_errors	MB21D1	HGNC	ENSG00000164430				18	0	0	23	6	20.6897
COL12A1	0	genome.wustl.edu	37	6	75833720	75833720	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	75833720	75833720	A	C	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.6815	p.V2272G	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				43	0	0	43	8	15.6863
KIAA1009	0	genome.wustl.edu	37	6	84894937	84894937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	84894937	84894937	G	A	SNP	KIAA1009	ENST00000403245	human	ensembl	74_37	-1	known	missense	c.1631	p.S544L	0.084	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315				61	0	0	32	24	42.8571
MMS22L	0	genome.wustl.edu	37	6	97599657	97599657	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	6	97599657	97599657	A	G	SNP	MMS22L	ENST00000275053	human	ensembl	74_37	-1	known	missense	c.3472	p.S1158P	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MMS22L	HGNC	ENSG00000146263				144	0	0	120	16	11.7647
SLC12A9	0	genome.wustl.edu	37	7	100457773	100457773	+	Silent	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	100457773	100457773	C	T	SNP	SLC12A9	ENST00000354161	human	ensembl	74_37	+1	known	silent	c.1137	p.G379	0.027	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828				106	1	0.934579	80	30	27.2727
RELN	0	genome.wustl.edu	37	7	103338449	103338449	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	103338449	103338449	T	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.994	p.N332Y	0.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				149	0	0	85	60	41.3793
CBLL1	0	genome.wustl.edu	37	7	107399250	107399250	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	107399250	107399250	T	C	SNP	CBLL1	ENST00000440859	human	ensembl	74_37	+1	known	missense	c.1103	p.V368A	0.994	NULL	pfscan_Znf_RING	-	no_errors	CBLL1	HGNC	ENSG00000105879				287	0	0	196	115	36.9775
CFTR	0	genome.wustl.edu	37	7	117292912	117292912	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	117292912	117292912	C	G	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	missense	c.3890	p.S1297C	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626				45	0	0	25	14	35.8974
SLC13A1	0	genome.wustl.edu	37	7	122811949	122811949	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	122811949	122811949	C	T	SNP	SLC13A1	ENST00000194130	human	ensembl	74_37	-1	known	missense	c.238	p.A80T	0.991	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800				73	0	0	25	20	44.4444
LUC7L2	0	genome.wustl.edu	37	7	139090517	139090517	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	139090517	139090517	A	C	SNP	LUC7L2	ENST00000541515	human	ensembl	74_37	+1	known	missense	c.692	p.K231T	1.000	pfam_Luc7-rel	pfam_Luc7-rel	-	no_errors	LUC7L2	HGNC	ENSG00000269955				42	0	0	22	13	37.1429
TBXAS1	0	genome.wustl.edu	37	7	139706972	139706972	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	139706972	139706972	C	A	SNP	TBXAS1	ENST00000416849	human	ensembl	74_37	+1	known	missense	c.1357	p.P453T	0.984	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	TBXAS1	HGNC	ENSG00000059377				98	0	0	64	37	36.6337
HTR5A	0	genome.wustl.edu	37	7	154863136	154863136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	154863136	154863136	C	T	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	missense	c.527	p.P176L	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219				56	0	0	39	18	31.5789
FTSJ2	0	genome.wustl.edu	37	7	2274902	2274902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	2274902	2274902	C	T	SNP	FTSJ2	ENST00000242257	human	ensembl	74_37	-1	known	missense	c.596	p.S199N	0.395	pfam_rRNA_MeTrfase_FtsJ_dom,pirsf_rRNA-MeTfrase_E	pfam_rRNA_MeTrfase_FtsJ_dom,pirsf_rRNA-MeTfrase_E	-	no_errors	FTSJ2	HGNC	ENSG00000122687				81	0	0	39	63	61.7647
PDE1C	0	genome.wustl.edu	37	7	32109917	32109917	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	32109917	32109917	C	G	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	missense	c.89	p.R30P	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678				137	0	0	104	11	9.56522
POU6F2	0	genome.wustl.edu	37	7	39125486	39125486	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	39125486	39125486	T	G	SNP	POU6F2	ENST00000403058	human	ensembl	74_37	+1	known	missense	c.45	p.S15R	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536				29	0	0	35	5	12.5
YKT6	0	genome.wustl.edu	37	7	44244201	44244201	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	44244201	44244201	A	T	SNP	YKT6	ENST00000223369	human	ensembl	74_37	+1	known	missense	c.139	p.I47F	1.000	superfamily_Longin-like_dom,pfscan_Longin_dom	pfam_Synaptobrevin,superfamily_Longin-like_dom,pfscan_Longin_dom,pfscan_Synaptobrevin	-	no_errors	YKT6	HGNC	ENSG00000106636				47	0	0	32	3	8.57143
ABCA13	0	genome.wustl.edu	37	7	48431709	48431709	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	48431709	48431709	A	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.11846	p.K3949T	0.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				77	0	0	27	22	44.898
ZKSCAN1	0	genome.wustl.edu	37	7	99621500	99621500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	7	99621500	99621500	G	A	SNP	ZKSCAN1	ENST00000324306	human	ensembl	74_37	+1	known	missense	c.371	p.G124E	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261				81	0	0	52	27	34.1772
DLC1	0	genome.wustl.edu	37	8	13356730	13356730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	8	13356730	13356730	C	T	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.851	p.C284Y	0.980	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				157	0	0	84	1371	94.2268
TOP1MT	0	genome.wustl.edu	37	8	144406731	144406731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	8	144406731	144406731	G	A	SNP	TOP1MT	ENST00000329245	human	ensembl	74_37	-1	known	missense	c.740	p.T247M	0.892	pfam_TopoI_DNA-bd_euk,superfamily_TopoI_DNA-bd_euk,smart_TopoI_euk	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1MT	HGNC	ENSG00000184428				109	0	0	82	18	18
LRRC24	0	genome.wustl.edu	37	8	145749546	145749546	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	8	145749546	145749546	G	A	SNP	LRRC24	ENST00000529415	human	ensembl	74_37	-1	known	silent	c.555	p.I185	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC24	HGNC	ENSG00000254402				161	1	0.617284	107	36	25.1748
MTUS1	0	genome.wustl.edu	37	8	17570732	17570732	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	8	17570732	17570732	G	C	SNP	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	missense	c.2614	p.L872V	0.162	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422				114	0	0	464	28	5.69106
ATP6V1B2	0	genome.wustl.edu	37	8	20055041	20055041	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	8	20055041	20055041	C	G	SNP	ATP6V1B2	ENST00000276390	human	ensembl	74_37	+1	known	missense	c.124	p.Q42E	1.000	NULL	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B2	HGNC	ENSG00000147416				11	0	0	3	4	57.1429
CSMD1	0	genome.wustl.edu	37	8	2966175	2966175	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	8	2966175	2966175	T	G	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.6707	p.K2236T	0.991	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				26	0	0	16	7	30.4348
KCNU1	0	genome.wustl.edu	37	8	36766874	36766874	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	8	36766874	36766874	G	A	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	missense	c.2152	p.A718T	0.965	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				267	0	0	170	25	12.8205
SNTG1	0	genome.wustl.edu	37	8	51314780	51314780	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	8	51314780	51314780	G	T	SNP	SNTG1	ENST00000518864	human	ensembl	74_37	+1	known	missense	c.38	p.G13V	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481				51	0	0	47	11	18.9655
PREX2	0	genome.wustl.edu	37	8	69002838	69002838	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	8	69002838	69002838	T	G	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.2138	p.L713R	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				46	0	0	57	6	9.52381
TMEM70	0	genome.wustl.edu	37	8	74893615	74893615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	8	74893615	74893615	C	T	SNP	TMEM70	ENST00000312184	human	ensembl	74_37	+1	known	missense	c.542	p.A181V	1.000	pfam_DUF1301_TMEM70	pfam_DUF1301_TMEM70	-	no_errors	TMEM70	HGNC	ENSG00000175606				96	0	0	58	19	24.6753
SVEP1	0	genome.wustl.edu	37	9	113170371	113170371	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	113170371	113170371	C	G	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.7509	p.E2503D	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				25	0	0	27	5	15.625
COL27A1	0	genome.wustl.edu	37	9	116931258	116931258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	116931258	116931258	C	T	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.1423	p.R475C	0.006	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				259	0	0	342	40	10.4712
ASTN2	0	genome.wustl.edu	37	9	119976963	119976963	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	119976963	119976963	T	C	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.689	p.Q230R	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				53	0	0	48	17	26.1538
PTGS1	0	genome.wustl.edu	37	9	125140225	125140225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	125140225	125140225	C	T	SNP	PTGS1	ENST00000362012	human	ensembl	74_37	+1	known	missense	c.142	p.R48C	1.000	pfscan_EG-like_dom	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303				64	0	0	65	26	28.5714
ZNF79	0	genome.wustl.edu	37	9	130206601	130206601	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	130206601	130206601	C	G	SNP	ZNF79	ENST00000342483	human	ensembl	74_37	+1	known	missense	c.622	p.L208V	0.162	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF79	HGNC	ENSG00000196152				97	0	0	117	16	12.0301
NUP188	0	genome.wustl.edu	37	9	131757647	131757647	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	131757647	131757647	G	A	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.3205	p.E1069K	0.992	NULL	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				109	0	0	82	17	17.1717
TOR1B	0	genome.wustl.edu	37	9	132571733	132571733	+	Silent	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	132571733	132571733	C	A	SNP	TOR1B	ENST00000259339	human	ensembl	74_37	+1	known	silent	c.882	p.A294	1.000	superfamily_P-loop_NTPase,pirsf_Torsin_subgr	pfam_Torsin,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	-	no_errors	TOR1B	HGNC	ENSG00000136816				74	0	0	81	19	19
MRPS2	0	genome.wustl.edu	37	9	138395577	138395577	+	Silent	SNP	C	C	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	138395577	138395577	C	T	SNP	MRPS2	ENST00000241600	human	ensembl	74_37	+1	known	silent	c.489	p.G163	0.718	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	-	no_errors	MRPS2	HGNC	ENSG00000122140				44	0	0	41	17	29.3103
TUBBP5	0	genome.wustl.edu	37	9	141070695	141070695	+	RNA	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	141070695	141070695	G	A	SNP	TUBBP5	ENST00000290377	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247				8	0	0	23	5	17.8571
LINGO2	0	genome.wustl.edu	37	9	27950090	27950090	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	27950090	27950090	T	C	SNP	LINGO2	ENST00000308675	human	ensembl	74_37	-1	known	missense	c.580	p.T194A	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO2	HGNC	ENSG00000174482				56	0	0	52	8	13.3333
SPATA31A6	0	genome.wustl.edu	37	9	43627226	43627226	+	Silent	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	43627226	43627226	G	T	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	silent	c.1461	p.P487	0.002	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				453	0	0	417	126	23.2044
VPS13A	0	genome.wustl.edu	37	9	79836216	79836216	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	79836216	79836216	T	C	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.1105	p.Y369H	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				78	0	0	49	27	35.5263
IARS	0	genome.wustl.edu	37	9	95003104	95003104	+	RNA	SNP	A	A	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	95003104	95003104	A	G	SNP	IARS	ENST00000473915	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	IARS	HGNC	ENSG00000196305				8	0	0	11	8	42.1053
ZNF169	0	genome.wustl.edu	37	9	97062730	97062730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	9	97062730	97062730	G	A	SNP	ZNF169	ENST00000395395	human	ensembl	74_37	+1	known	missense	c.890	p.R297Q	0.030	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787				79	0	0	92	37	28.6822
NOX1	0	genome.wustl.edu	37	X	100106242	100106242	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	100106242	100106242	G	T	SNP	NOX1	ENST00000372966	human	ensembl	74_37	-1	known	missense	c.877	p.Q293K	1.000	superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX1	HGNC	ENSG00000007952				12	0	0	7	6	46.1538
NRK	0	genome.wustl.edu	37	X	105153261	105153261	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	105153261	105153261	A	C	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	missense	c.1631	p.N544T	0.009	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				12	0	0	16	8	33.3333
TMEM164	0	genome.wustl.edu	37	X	109247079	109247079	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	109247079	109247079	G	T	SNP	TMEM164	ENST00000372068	human	ensembl	74_37	+1	known	missense	c.77	p.G26V	1.000	NULL	NULL	-	no_errors	TMEM164	HGNC	ENSG00000157600				86	0	0	93	16	14.6789
HTR2C	0	genome.wustl.edu	37	X	114141192	114141192	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	114141192	114141192	A	C	SNP	HTR2C	ENST00000276198	human	ensembl	74_37	+1	known	missense	c.591	p.E197D	0.004	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2C_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246				74	0	0	67	27	28.7234
OCRL	0	genome.wustl.edu	37	X	128695194	128695194	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	128695194	128695194	A	C	SNP	OCRL	ENST00000371113	human	ensembl	74_37	+1	known	missense	c.863	p.Y288S	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126				73	0	0	72	24	25
ARHGAP36	0	genome.wustl.edu	37	X	130217933	130217933	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	130217933	130217933	G	A	SNP	ARHGAP36	ENST00000276211	human	ensembl	74_37	+1	known	missense	c.545	p.R182H	0.999	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256				22	0	0	14	9	39.1304
F8	0	genome.wustl.edu	37	X	154159499	154159499	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	154159499	154159499	A	C	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	missense	c.2566	p.F856V	0.001	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				27	0	0	21	10	32.2581
ZNF645	0	genome.wustl.edu	37	X	22292332	22292332	+	Silent	SNP	A	A	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	22292332	22292332	A	C	SNP	ZNF645	ENST00000323684	human	ensembl	74_37	+1	known	silent	c.1224	p.S408	0.000	NULL	pfscan_Znf_RING,pfscan_Znf_C2H2	-	no_errors	ZNF645	HGNC	ENSG00000175809				52	0	0	37	21	36.2069
DMD	0	genome.wustl.edu	37	X	32430014	32430014	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	32430014	32430014	T	C	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.4088	p.K1363R	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				15	0	0	7	6	46.1538
FAM47A	0	genome.wustl.edu	37	X	34149499	34149499	+	Silent	SNP	C	C	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	34149499	34149499	C	A	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	silent	c.897	p.G299	0.085	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				20	0	0	20	7	25.9259
AKAP4	0	genome.wustl.edu	37	X	49958929	49958929	+	Silent	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	49958929	49958929	G	A	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	silent	c.435	p.G145	0.000	smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081				30	0	0	10	15	60
COX7B	0	genome.wustl.edu	37	X	77158163	77158163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	X	77158163	77158163	G	A	SNP	COX7B	ENST00000481445	human	ensembl	74_37	+1	known	missense	c.64	p.A22T	0.991	pfam_Cyt_c_oxidase_suVIIB	pfam_Cyt_c_oxidase_suVIIB,superfamily_Cyt_c_oxidase_suVIIB_dom	-	no_errors	COX7B	HGNC	ENSG00000131174				35	0	0	24	6	20
SLC9C2	0	genome.wustl.edu	37	1	173556952	173556953	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	1	173556952	173556953	-	A	INS	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	frame_shift_ins	c.375_374	p.L125fs	0.000:0.002	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				56	0	0	36	8	18.1818
DOCK1	0	genome.wustl.edu	37	10	129202588	129202589	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	10	129202588	129202589	-	A	INS	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	frame_shift_ins	c.3956_3955	p.Q1321fs	1.000:1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				26	0	0	12	8	40
TBX3	0	genome.wustl.edu	37	12	115114134	115114134	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	12	115114134	115114134	C	-	DEL	TBX3	ENST00000257566	human	ensembl	74_37	-1	known	frame_shift_del	c.1083	p.T362fs	0.999	pfam_TBX	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111				72	0	0	52	30	36.5854
PRKAB1	0	genome.wustl.edu	37	12	120110200	120110201	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	12	120110200	120110201	-	G	INS	PRKAB1	ENST00000229328	human	ensembl	74_37	+1	known	frame_shift_ins	c.254_255	p.G88fs	1.000:0.166	superfamily_Ig_E-set	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB1	HGNC	ENSG00000111725				181	0	0	113	51	31.0976
ATXN3	0	genome.wustl.edu	37	14	92549604	92549605	+	Splice_Site	INS	-	-	A			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	14	92549604	92549605	-	A	INS	ATXN3	ENST00000545170	human	ensembl	74_37	-1	known	splice_site_ins	c.476-3_476-2	e7-2	1.000:0.992	-	-	-	no_errors	ATXN3	HGNC	ENSG00000066427				21	0	0	28	3	9.67742
LOC101927079	0	genome.wustl.edu	37	15	22332418	22332419	+	RNA	INS	-	-	G			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	15	22332418	22332419	-	G	INS	LOC101927079	ENST00000558896	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.134:0.012	-	-	-	no_errors	RP11-69H14.6	Clone_based_vega_gene	ENSG00000259176				51	0	0	33	6	15.3846
RAI1	0	genome.wustl.edu	37	17	17699215	17699215	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	17	17699215	17699215	C	-	DEL	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	frame_shift_del	c.2953	p.I986fs	0.001	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				30	0	0	19	2	9.52381
ZNF492	0	genome.wustl.edu	37	19	22846646	22846646	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	19	22846646	22846646	A	-	DEL	ZNF492	ENST00000456783	human	ensembl	74_37	+1	known	frame_shift_del	c.175	p.N61fs	0.001	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676				28	0	0	16	3	15.7895
FN1	0	genome.wustl.edu	37	2	216238071	216238071	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	2	216238071	216238071	T	-	DEL	FN1	ENST00000354785	human	ensembl	74_37	-1	known	frame_shift_del	c.6221	p.E2074fs	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				152	0	0	74	34	31.4815
RBM5	0	genome.wustl.edu	37	3	50155888	50155889	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	3	50155888	50155889	GA	-	DEL	RBM5	ENST00000347869	human	ensembl	74_37	+1	known	frame_shift_del	c.2447_2448	p.*816fs	1.000:0.999	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM5	HGNC	ENSG00000003756				20	0	0	17	2	10.5263
VPS13B	0	genome.wustl.edu	37	8	100108564	100108564	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8289-01A-11D-2340-08	TCGA-BR-8289-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40818d57-8b27-494c-b964-e2d5c25fc89a	9adabd0d-8d21-4b18-8c22-09bc808d1d5d	8	100108564	100108564	A	-	DEL	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	frame_shift_del	c.316	p.N106fs	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				73	0	0	19	2	9.52381
