Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NBPF9	0	genome.wustl.edu	37	1	144828599	144828599	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	1	144828599	144828599	G	A	SNP	NBPF9	ENST00000281815	human	ensembl	74_37	+1	known	missense	c.439	p.G147R	0.014	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF9	HGNC	ENSG00000168614				121	0	0	90	7	7.21649
PDE4DIP	0	genome.wustl.edu	37	1	144892368	144892368	+	RNA	SNP	A	A	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	1	144892368	144892368	A	T	SNP	PDE4DIP	ENST00000467859	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				8	0	0	3	4	57.1429
FCRL3	0	genome.wustl.edu	37	1	157667132	157667132	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	1	157667132	157667132	C	G	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	missense	c.642	p.Q214H	0.227	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856				49	0	0	40	10	20
ESPNP	0	genome.wustl.edu	37	1	17023403	17023403	+	RNA	SNP	G	G	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	1	17023403	17023403	G	A	SNP	ESPNP	ENST00000492551	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ESPNP	HGNC	ENSG00000268869				13	0	0	11	6	35.2941
MROH7-TTC4	0	genome.wustl.edu	37	1	55166016	55166016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	1	55166016	55166016	G	A	SNP	MROH7-TTC4	ENST00000414150	human	ensembl	74_37	+1	known	missense	c.2987	p.R996H	0.689	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH7-TTC4	HGNC	ENSG00000271723				14	0	0	15	3	16.6667
OPCML	0	genome.wustl.edu	37	11	132290138	132290138	+	Silent	SNP	A	A	G			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	11	132290138	132290138	A	G	SNP	OPCML	ENST00000541867	human	ensembl	74_37	-1	known	silent	c.1014	p.A338	0.986	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	OPCML	HGNC	ENSG00000183715				27	0	0	45	10	18.1818
OR51B5	0	genome.wustl.edu	37	11	5364208	5364208	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	11	5364208	5364208	T	A	SNP	OR51B5	ENST00000300773	human	ensembl	74_37	-1	known	missense	c.547	p.I183F	0.813	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51B5	HGNC	ENSG00000242180				72	0	0	57	18	24
UTP20	0	genome.wustl.edu	37	12	101679619	101679619	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	12	101679619	101679619	C	G	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	missense	c.286	p.L96V	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				22	0	0	33	6	15.3846
PAH	0	genome.wustl.edu	37	12	103249044	103249044	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	12	103249044	103249044	C	A	SNP	PAH	ENST00000553106	human	ensembl	74_37	-1	known	missense	c.576	p.K192N	0.996	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Phe-4-hydroxylase_tetra	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Phe-4-hydroxylase_tetra	-	no_errors	PAH	HGNC	ENSG00000171759				27	0	0	18	4	18.1818
SOX5	0	genome.wustl.edu	37	12	23893843	23893843	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	12	23893843	23893843	T	G	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.699	p.K233N	0.997	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				28	0	0	26	4	13.3333
WNT10B	0	genome.wustl.edu	37	12	49361823	49361823	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	12	49361823	49361823	C	G	SNP	WNT10B	ENST00000301061	human	ensembl	74_37	-1	known	missense	c.617	p.G206A	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10B	HGNC	ENSG00000169884				24	0	0	22	5	18.5185
PTGES3	0	genome.wustl.edu	37	12	57066579	57066579	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	12	57066579	57066579	C	T	SNP	PTGES3	ENST00000262033	human	ensembl	74_37	-1	known	missense	c.131	p.S44N	1.000	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	PTGES3	HGNC	ENSG00000110958				18	0	0	8	3	27.2727
PTPRB	0	genome.wustl.edu	37	12	70918346	70918346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	12	70918346	70918346	C	T	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	missense	c.6530	p.C2177Y	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				27	0	0	18	3	14.2857
WASH3P	0	genome.wustl.edu	37	15	102515299	102515299	+	RNA	SNP	G	G	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	15	102515299	102515299	G	A	SNP	WASH3P	ENST00000557932	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596				18	0	0	9	3	25
INO80	0	genome.wustl.edu	37	15	41277579	41277579	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	15	41277579	41277579	C	A	SNP	INO80	ENST00000361937	human	ensembl	74_37	-1	known	missense	c.3878	p.R1293L	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908				38	0	0	25	3	10.7143
TRIM69	0	genome.wustl.edu	37	15	45047126	45047126	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	15	45047126	45047126	A	G	SNP	TRIM69	ENST00000329464	human	ensembl	74_37	+1	known	missense	c.35	p.D12G	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	TRIM69	HGNC	ENSG00000185880				53	0	0	46	7	13.2075
ZP2	0	genome.wustl.edu	37	16	21215498	21215498	+	Silent	SNP	G	G	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	16	21215498	21215498	G	T	SNP	ZP2	ENST00000219593	human	ensembl	74_37	-1	known	silent	c.825	p.L275	0.396	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP2	HGNC	ENSG00000103310				39	0	0	33	2	5.71429
EIF3C	0	genome.wustl.edu	37	16	28734801	28734801	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	16	28734801	28734801	G	T	SNP	EIF3C	ENST00000331666	human	ensembl	74_37	+1	known	missense	c.969	p.E323D	1.000	pfam_EIF3C_N_dom	pfam_EIF3C_N_dom,pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3C	HGNC	ENSG00000184110				132	0	0	88	17	16.1905
NIP7	0	genome.wustl.edu	37	16	69374272	69374272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	16	69374272	69374272	G	A	SNP	NIP7	ENST00000569637	human	ensembl	74_37	+1	putative	missense	c.319	p.E107K	0.000	NULL	NULL	-	no_errors	NIP7	HGNC	ENSG00000132603				31	0	0	22	6	21.4286
SPACA3	0	genome.wustl.edu	37	17	31323950	31323950	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	17	31323950	31323950	A	C	SNP	SPACA3	ENST00000269053	human	ensembl	74_37	+1	known	missense	c.433	p.I145L	1.000	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	SPACA3	HGNC	ENSG00000141316				58	0	0	45	13	22.4138
RSAD1	0	genome.wustl.edu	37	17	48562190	48562190	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	17	48562190	48562190	C	T	SNP	RSAD1	ENST00000258955	human	ensembl	74_37	+1	known	nonsense	c.1297	p.Q433*	0.020	NULL	pfam_HemN_C_dom,pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_Coprogen_oxidase_HemN-rel	-	no_errors	RSAD1	HGNC	ENSG00000136444				13	0	0	7	4	36.3636
ABCA9	0	genome.wustl.edu	37	17	66980283	66980283	+	Silent	SNP	C	C	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	17	66980283	66980283	C	T	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	silent	c.4413	p.E1471	0.009	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				40	0	0	34	4	10.5263
NPIPB1P	0	genome.wustl.edu	37	18	11619636	11619636	+	RNA	SNP	C	C	G			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	18	11619636	11619636	C	G	SNP	NPIPB1P	ENST00000547442	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	NPIPB1P	HGNC	ENSG00000257513				25	0	0	15	4	21.0526
TSSK6	0	genome.wustl.edu	37	19	19625817	19625817	+	Silent	SNP	G	G	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	19	19625817	19625817	G	A	SNP	TSSK6	ENST00000360913	human	ensembl	74_37	-1	known	silent	c.420	p.N140	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TSSK6	HGNC	ENSG00000178093				49	0	0	33	6	15.3846
ZNF461	0	genome.wustl.edu	37	19	37130886	37130886	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	19	37130886	37130886	C	A	SNP	ZNF461	ENST00000588268	human	ensembl	74_37	-1	known	nonsense	c.361	p.E121*	0.201	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808				52	0	0	27	13	32.5
RYR1	0	genome.wustl.edu	37	19	38966037	38966037	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	19	38966037	38966037	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.4240	p.V1414M	0.999	pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				19	0	0	14	8	36.3636
EXOC3L2	0	genome.wustl.edu	37	19	45728123	45728123	+	Silent	SNP	C	C	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	19	45728123	45728123	C	T	SNP	EXOC3L2	ENST00000252482	human	ensembl	74_37	-1	known	silent	c.453	p.P151	0.196	pfam_Sec6	pfam_Sec6,superfamily_Tet_transcr_reg_TetR-rel_C	-	no_errors	EXOC3L2	HGNC	ENSG00000130201				8	0	0	6	7	53.8462
NLRP2	0	genome.wustl.edu	37	19	55489171	55489171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	19	55489171	55489171	G	A	SNP	NLRP2	ENST00000448584	human	ensembl	74_37	+1	known	missense	c.377	p.R126H	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556				36	0	0	16	5	23.8095
C2orf49	0	genome.wustl.edu	37	2	105959525	105959525	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	2	105959525	105959525	A	G	SNP	C2orf49	ENST00000258457	human	ensembl	74_37	+1	known	missense	c.487	p.K163E	0.997	NULL	NULL	-	no_errors	C2orf49	HGNC	ENSG00000135974				46	0	0	31	4	11.4286
DHRS9	0	genome.wustl.edu	37	2	169938103	169938103	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	2	169938103	169938103	G	A	SNP	DHRS9	ENST00000432060	human	ensembl	74_37	+1	known	nonsense	c.192	p.W64*	0.003	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS9	HGNC	ENSG00000073737				31	0	0	30	2	6.25
SPEG	0	genome.wustl.edu	37	2	220331910	220331910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	2	220331910	220331910	C	T	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.2896	p.R966W	1.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				83	0	0	50	17	25.3731
USP34	0	genome.wustl.edu	37	2	61415542	61415542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	2	61415542	61415542	C	T	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.10336	p.D3446N	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				40	0	0	35	2	5.40541
ACTR5	0	genome.wustl.edu	37	20	37400233	37400233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	20	37400233	37400233	C	T	SNP	ACTR5	ENST00000243903	human	ensembl	74_37	+1	known	missense	c.1598	p.A533V	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR5	HGNC	ENSG00000101442				41	0	0	32	2	5.88235
SLMO2	0	genome.wustl.edu	37	20	57613669	57613669	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	20	57613669	57613669	G	T	SNP	SLMO2	ENST00000355937	human	ensembl	74_37	-1	known	missense	c.53	p.T18K	0.891	pfam_PRELI/MSF1,pfscan_PRELI/MSF1	pfam_PRELI/MSF1,pfscan_PRELI/MSF1	-	no_errors	SLMO2	HGNC	ENSG00000101166				58	0	0	47	12	20.339
KIAA0922	0	genome.wustl.edu	37	4	154514965	154514965	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	4	154514965	154514965	T	C	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	missense	c.1937	p.M646T	0.988	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210				10	0	0	6	6	50
PURA	0	genome.wustl.edu	37	5	139494596	139494596	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	5	139494596	139494596	A	G	SNP	PURA	ENST00000331327	human	ensembl	74_37	+1	known	missense	c.830	p.E277G	1.000	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	-	no_errors	PURA	HGNC	ENSG00000185129				34	0	0	27	3	10
AKAP12	0	genome.wustl.edu	37	6	151671966	151671966	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	6	151671966	151671966	C	T	SNP	AKAP12	ENST00000253332	human	ensembl	74_37	+1	known	nonsense	c.2440	p.R814*	0.997	pfam_Pkinase-A_anch_WSK-motif	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016				82	0	0	53	6	10.1695
TNXB	0	genome.wustl.edu	37	6	32010126	32010126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	6	32010126	32010126	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.12218	p.R4073H	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				12	0	0	10	4	28.5714
TYW1B	0	genome.wustl.edu	37	7	72081809	72081809	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	7	72081809	72081809	T	C	SNP	TYW1B	ENST00000343721	human	ensembl	74_37	-1	known	missense	c.511	p.R171G	1.000	pfam_tRNA_wybutosine-synth	pfam_rSAM,pfam_tRNA_wybutosine-synth	-	no_errors	TYW1B	HGNC	ENSG00000254184				34	0	0	28	4	12.5
ABCB4	0	genome.wustl.edu	37	7	87031414	87031414	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	7	87031414	87031414	A	G	SNP	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	nonstop	c.3859	p.*1287R	0.829	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				43	0	0	24	9	27.2727
ZNF804B	0	genome.wustl.edu	37	7	88966144	88966144	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	7	88966144	88966144	T	G	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.3848	p.L1283R	0.988	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				103	0	0	77	15	16.3043
CSMD1	0	genome.wustl.edu	37	8	3256967	3256967	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	8	3256967	3256967	C	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.2354	p.C785F	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				30	0	0	22	5	18.5185
PTPLAD2	0	genome.wustl.edu	37	9	21007086	21007086	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	9	21007086	21007086	C	A	SNP	PTPLAD2	ENST00000495827	human	ensembl	74_37	-1	known	nonsense	c.649	p.E217*	1.000	pfam_Tyr_Pase-like_PTPLA	pfam_Tyr_Pase-like_PTPLA	-	no_errors	PTPLAD2	HGNC	ENSG00000188921				28	0	0	21	2	8.69565
ATP7A	0	genome.wustl.edu	37	X	77298826	77298826	+	Silent	SNP	G	G	A			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	X	77298826	77298826	G	A	SNP	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	silent	c.4017	p.L1339	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				15	0	0	8	8	50
CEP55	0	genome.wustl.edu	37	10	95276744	95276744	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	10	95276744	95276744	A	-	DEL	CEP55	ENST00000371485	human	ensembl	74_37	+1	known	frame_shift_del	c.732	p.D247fs	0.967	NULL	pfam_EABR	-	no_errors	CEP55	HGNC	ENSG00000138180				36	0	0	23	2	8
SLC24A1	0	genome.wustl.edu	37	15	65918177	65918179	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	15	65918177	65918179	CTG	-	DEL	SLC24A1	ENST00000261892	human	ensembl	74_37	+1	known	in_frame_del	c.1759_1761	p.L590in_frame_del	1.000:1.000:1.000	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A1	HGNC	ENSG00000074621				54	0	0	24	5	17.2414
DSTN	0	genome.wustl.edu	37	20	17581680	17581680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	20	17581680	17581680	T	-	DEL	DSTN	ENST00000246069	human	ensembl	74_37	+1	known	frame_shift_del	c.301	p.L103fs	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	-	no_errors	DSTN	HGNC	ENSG00000125868				31	0	0	19	2	9.52381
SYCP2	0	genome.wustl.edu	37	20	58467047	58467047	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	20	58467047	58467047	T	-	DEL	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_del	c.2362	p.M788fs	0.029	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				17	0	0	14	3	17.6471
NDFIP1	0	genome.wustl.edu	37	5	141511526	141511526	+	RNA	DEL	A	A	-			TCGA-BR-8291-01A-11D-2340-08	TCGA-BR-8291-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8dddc2ef-25b3-4061-beb5-7a74560c354d	4ebd9f1e-b33c-40e7-a3ec-a898797b88b0	5	141511526	141511526	A	-	DEL	NDFIP1	ENST00000509436	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NDFIP1	HGNC	ENSG00000131507				10	0	0	12	4	25
