Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
POLR3C	0	genome.wustl.edu	37	1	145608112	145608112	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	1	145608112	145608112	C	G	SNP	POLR3C	ENST00000334163	human	ensembl	74_37	-1	known	missense	c.585	p.L195F	0.997	pfam_RNA_pol_III_Rpc82_C	pfam_RNA_pol_III_Rpc82_C,pfam_RNA_pol_III_RPC82-rel_HTH	-	no_errors	POLR3C	HGNC	ENSG00000186141				169	0	0	113	22	16.2963
NBPF16	0	genome.wustl.edu	37	1	148756518	148756518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	1	148756518	148756518	C	T	SNP	NBPF16	ENST00000417839	human	ensembl	74_37	+1	known	missense	c.1847	p.S616L	0.001	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF16	HGNC	ENSG00000203827				10	0	0	9	4	30.7692
F11R	0	genome.wustl.edu	37	1	160970514	160970514	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	1	160970514	160970514	C	G	SNP	F11R	ENST00000368026	human	ensembl	74_37	-1	known	missense	c.295	p.V99L	0.975	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	F11R	HGNC	ENSG00000158769				134	0	0	81	17	17.3469
LHX9	0	genome.wustl.edu	37	1	197898303	197898303	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	1	197898303	197898303	A	G	SNP	LHX9	ENST00000367387	human	ensembl	74_37	+1	known	missense	c.1108	p.I370V	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX9	HGNC	ENSG00000143355				147	0	0	12	82	87.234
ENSG00000229821	0	genome.wustl.edu	37	1	201191988	201191988	+	RNA	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	1	201191988	201191988	G	A	SNP	ENSG00000229821	ENST00000453155	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-567E21.3	Clone_based_vega_gene	ENSG00000229821				23	0	0	3	19	86.3636
OR2W5	0	genome.wustl.edu	37	1	247654603	247654603	+	RNA	SNP	C	C	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	1	247654603	247654603	C	A	SNP	OR2W5	ENST00000522351	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664				73	0	0	46	12	20.6897
OR1C1	0	genome.wustl.edu	37	1	247920847	247920847	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	1	247920847	247920847	A	C	SNP	OR1C1	ENST00000408896	human	ensembl	74_37	-1	known	missense	c.862	p.F288V	0.976	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1C1	HGNC	ENSG00000221888				167	0	0	110	6	5.17241
HMGN2	0	genome.wustl.edu	37	1	26801762	26801762	+	RNA	SNP	G	G	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	1	26801762	26801762	G	T	SNP	HMGN2	ENST00000460563	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGN2	HGNC	ENSG00000198830				15	0	0	10	10	50
PTPRU	0	genome.wustl.edu	37	1	29618490	29618490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	1	29618490	29618490	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.2458	p.E820K	0.999	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				74	0	0	37	7	15.9091
MCOLN2	0	genome.wustl.edu	37	1	85424250	85424250	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	1	85424250	85424250	C	G	SNP	MCOLN2	ENST00000370608	human	ensembl	74_37	-1	known	missense	c.373	p.E125Q	0.815	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898				137	0	0	111	14	11.2
DMBT1	0	genome.wustl.edu	37	10	124377716	124377716	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	10	124377716	124377716	A	G	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	missense	c.4688	p.Q1563R	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				479	1	0.208333	162	53	24.6512
BICC1	0	genome.wustl.edu	37	10	60577466	60577466	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	10	60577466	60577466	T	G	SNP	BICC1	ENST00000373886	human	ensembl	74_37	+1	known	missense	c.2678	p.V893G	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870				74	0	0	33	3	8.33333
RRP12	0	genome.wustl.edu	37	10	99125949	99125949	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	10	99125949	99125949	C	T	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	missense	c.3433	p.G1145S	0.998	NULL	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				159	0	0	34	4	10.5263
MICAL2	0	genome.wustl.edu	37	11	12225829	12225829	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	11	12225829	12225829	G	T	SNP	MICAL2	ENST00000256194	human	ensembl	74_37	+1	known	missense	c.297	p.L99F	1.000	pfam_mOase_FAD-bd,pfam_FAD_bind_dom,prints_Rng_hydrolase-like	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL2	HGNC	ENSG00000133816				106	1	0.934579	33	20	37.7358
ARHGAP32	0	genome.wustl.edu	37	11	128910876	128910876	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	11	128910876	128910876	T	A	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	missense	c.950	p.E317V	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				21	0	0	11	2	15.3846
OR4A47	0	genome.wustl.edu	37	11	48510989	48510989	+	Silent	SNP	T	T	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	11	48510989	48510989	T	C	SNP	OR4A47	ENST00000446524	human	ensembl	74_37	+1	known	silent	c.645	p.S215	0.918	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A47	HGNC	ENSG00000237388				172	0	0	71	25	26.0417
OR5M3	0	genome.wustl.edu	37	11	56237826	56237826	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	11	56237826	56237826	T	C	SNP	OR5M3	ENST00000312240	human	ensembl	74_37	-1	known	missense	c.148	p.S50G	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M3	HGNC	ENSG00000174937				216	1	0.460829	82	26	24.0741
NEU3	0	genome.wustl.edu	37	11	74705696	74705696	+	Silent	SNP	T	T	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	11	74705696	74705696	T	C	SNP	NEU3	ENST00000294064	human	ensembl	74_37	+1	known	silent	c.237	p.S79	0.424	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU3	HGNC	ENSG00000162139				132	0	0	59	5	7.8125
PLBD2	0	genome.wustl.edu	37	12	113812717	113812717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	12	113812717	113812717	G	A	SNP	PLBD2	ENST00000280800	human	ensembl	74_37	+1	known	missense	c.764	p.S255N	0.031	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176				146	0	0	47	24	33.8028
GCN1L1	0	genome.wustl.edu	37	12	120575538	120575538	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	12	120575538	120575538	C	G	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	missense	c.6474	p.E2158D	0.995	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				45	0	0	39	12	23.5294
RIMBP2	0	genome.wustl.edu	37	12	130898838	130898838	+	Silent	SNP	T	T	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	12	130898838	130898838	T	C	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	silent	c.2484	p.R828	0.029	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709				136	0	0	35	18	33.9623
LINC00477	0	genome.wustl.edu	37	12	24736768	24736768	+	RNA	SNP	C	C	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	12	24736768	24736768	C	A	SNP	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				119	0	0	50	13	20.6349
LRRK2	0	genome.wustl.edu	37	12	40692056	40692056	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	12	40692056	40692056	T	G	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.3108	p.S1036R	0.998	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				57	0	0	24	15	38.4615
KRT75	0	genome.wustl.edu	37	12	52822136	52822136	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	12	52822136	52822136	C	G	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1286	p.R429P	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				144	0	0	21	32	60.3774
C12orf66	0	genome.wustl.edu	37	12	64587772	64587772	+	Silent	SNP	G	G	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	12	64587772	64587772	G	C	SNP	C12orf66	ENST00000398055	human	ensembl	74_37	-1	known	silent	c.1188	p.T396	0.997	pfam_DUF2003	pfam_DUF2003	-	no_errors	C12orf66	HGNC	ENSG00000174206				277	0	0	147	8	5.16129
CEP128	0	genome.wustl.edu	37	14	81251532	81251532	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	14	81251532	81251532	G	C	SNP	CEP128	ENST00000281129	human	ensembl	74_37	-1	known	missense	c.1918	p.L640V	0.996	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629				207	0	0	97	23	19.1667
GOLGA8K	0	genome.wustl.edu	37	15	32686365	32686365	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	15	32686365	32686365	A	G	SNP	GOLGA8K	ENST00000512626	human	ensembl	74_37	-1	novel	missense	c.1346	p.L449P	1.000	NULL	NULL	-	no_errors	GOLGA8K	HGNC	ENSG00000249931				8	0	0	2	2	50
C15orf26	0	genome.wustl.edu	37	15	81428957	81428957	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	15	81428957	81428957	G	A	SNP	C15orf26	ENST00000286732	human	ensembl	74_37	+1	known	missense	c.260	p.R87H	0.000	NULL	NULL	-	no_errors	C15orf26	HGNC	ENSG00000156206				119	0	0	47	16	25.3968
SCNN1G	0	genome.wustl.edu	37	16	23226787	23226787	+	Silent	SNP	C	C	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	16	23226787	23226787	C	G	SNP	SCNN1G	ENST00000300061	human	ensembl	74_37	+1	known	silent	c.1947	p.L649	0.206	NULL	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828				122	0	0	46	4	8
FUS	0	genome.wustl.edu	37	16	31195219	31195219	+	Silent	SNP	G	G	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	16	31195219	31195219	G	C	SNP	FUS	ENST00000254108	human	ensembl	74_37	+1	known	silent	c.231	p.S77	0.162	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	FUS	HGNC	ENSG00000089280				297	1	0.33557	99	12	10.8108
MYLK3	0	genome.wustl.edu	37	16	46744687	46744687	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	16	46744687	46744687	G	A	SNP	MYLK3	ENST00000394809	human	ensembl	74_37	-1	known	missense	c.2129	p.S710F	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK3	HGNC	ENSG00000140795				337	1	0.295858	107	20	15.748
RANBP10	0	genome.wustl.edu	37	16	67763622	67763622	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	16	67763622	67763622	G	C	SNP	RANBP10	ENST00000317506	human	ensembl	74_37	-1	known	missense	c.1108	p.P370A	1.000	NULL	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP10	HGNC	ENSG00000141084				136	0	0	26	12	31.5789
SF3B3	0	genome.wustl.edu	37	16	70563087	70563087	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	16	70563087	70563087	C	G	SNP	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	missense	c.382	p.R128G	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				145	1	0.684932	39	17	30.3571
MYH13	0	genome.wustl.edu	37	17	10243717	10243717	+	Silent	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	17	10243717	10243717	G	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	silent	c.1896	p.G632	0.994	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				89	0	0	23	3	11.5385
WFIKKN2	0	genome.wustl.edu	37	17	48917788	48917788	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	17	48917788	48917788	G	A	SNP	WFIKKN2	ENST00000311378	human	ensembl	74_37	+1	known	missense	c.1139	p.S380N	0.236	NULL	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Netrin_module_non-TIMP,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Ig_V-set,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN2	HGNC	ENSG00000173714				123	0	0	19	22	53.6585
SKA2	0	genome.wustl.edu	37	17	57232569	57232569	+	RNA	SNP	C	C	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	17	57232569	57232569	C	A	SNP	SKA2	ENST00000583927	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.720	-	-	-	no_errors	SKA2	HGNC	ENSG00000182628				224	0	0	73	20	21.5054
CEP192	0	genome.wustl.edu	37	18	13087566	13087566	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	18	13087566	13087566	A	T	SNP	CEP192	ENST00000506447	human	ensembl	74_37	+1	known	missense	c.5914	p.I1972F	0.059	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639				117	0	0	79	12	13.1868
ENSG00000173213	0	genome.wustl.edu	37	18	49062	49062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	18	49062	49062	G	A	SNP	ENSG00000173213	ENST00000573909	human	ensembl	74_37	-1	putative	missense	c.157	p.R53C	0.001	smart_Tubulin_FtsZ_GTPase	pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin	-	no_errors	RP11-683L23.1	Clone_based_vega_gene	ENSG00000173213				97	0	0	19	12	38.7097
LAMA1	0	genome.wustl.edu	37	18	7080363	7080363	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	18	7080363	7080363	A	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.155	p.L52H	0.998	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				175	0	0	42	30	41.6667
ZNF714	0	genome.wustl.edu	37	19	21300801	21300801	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	19	21300801	21300801	G	C	SNP	ZNF714	ENST00000596143	human	ensembl	74_37	+1	known	missense	c.1331	p.R444T	0.942	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF714	HGNC	ENSG00000160352				99	0	0	50	17	25.3731
LMNB2	0	genome.wustl.edu	37	19	2433890	2433890	+	Silent	SNP	A	A	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	19	2433890	2433890	A	G	SNP	LMNB2	ENST00000325327	human	ensembl	74_37	-1	known	silent	c.1416	p.G472	0.004	pfam_Lamin_tail_dom	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619				160	0	0	47	4	7.84314
C19orf55	0	genome.wustl.edu	37	19	36258765	36258765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	19	36258765	36258765	G	A	SNP	C19orf55	ENST00000396908	human	ensembl	74_37	+1	known	missense	c.1018	p.E340K	0.001	NULL	NULL	-	no_errors	C19orf55	HGNC	ENSG00000167595				54	0	0	26	6	18.75
PNMAL2	0	genome.wustl.edu	37	19	46997109	46997109	+	Silent	SNP	C	C	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	19	46997109	46997109	C	T	SNP	PNMAL2	ENST00000599531	human	ensembl	74_37	-1	known	silent	c.1614	p.A538	0.062	NULL	NULL	-	no_errors	PNMAL2	HGNC	ENSG00000204851				20	0	0	11	6	35.2941
RAD51AP2	0	genome.wustl.edu	37	2	17699573	17699573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	2	17699573	17699573	C	T	SNP	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	missense	c.110	p.C37Y	0.469	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				252	0	0	63	56	47.0588
TTN	0	genome.wustl.edu	37	2	179421694	179421694	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	2	179421694	179421694	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.80483	p.I26828T	0.894	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				72	0	0	32	4	11.1111
TTN	0	genome.wustl.edu	37	2	179634421	179634421	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	2	179634421	179634421	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.8887	p.T2963P	1.000	superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				136	1	0.729927	42	43	50.5882
ERBB4	0	genome.wustl.edu	37	2	212566719	212566719	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	2	212566719	212566719	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.1462	p.R488W	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				210	0	0	88	26	22.807
SPHKAP	0	genome.wustl.edu	37	2	228882483	228882483	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	2	228882483	228882483	T	A	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.3087	p.E1029D	0.997	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				191	1	0.520833	72	35	32.7103
GALNT14	0	genome.wustl.edu	37	2	31133683	31133683	+	RNA	SNP	C	C	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	2	31133683	31133683	C	A	SNP	GALNT14	ENST00000475320	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GALNT14	HGNC	ENSG00000158089				18	0	0	29	9	23.6842
DGUOK	0	genome.wustl.edu	37	2	74173903	74173903	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	2	74173903	74173903	C	T	SNP	DGUOK	ENST00000264093	human	ensembl	74_37	+1	known	nonsense	c.313	p.R105*	1.000	superfamily_P-loop_NTPase	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase	-	no_errors	DGUOK	HGNC	ENSG00000114956				124	0	0	54	22	28.9474
ZAP70	0	genome.wustl.edu	37	2	98351812	98351812	+	Silent	SNP	C	C	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	2	98351812	98351812	C	T	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	silent	c.1182	p.D394	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				285	0	0	70	33	32.0388
CLDN8	0	genome.wustl.edu	37	21	31587611	31587611	+	Silent	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	21	31587611	31587611	G	A	SNP	CLDN8	ENST00000286809	human	ensembl	74_37	-1	known	silent	c.633	p.T211	0.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin8,prints_Claudin14	-	no_errors	CLDN8	HGNC	ENSG00000156284				219	0	0	102	54	34.6154
POTEH-AS1	0	genome.wustl.edu	37	22	16278057	16278057	+	RNA	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	22	16278057	16278057	G	A	SNP	POTEH-AS1	ENST00000422014	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.044	-	-	-	no_errors	POTEH-AS1	HGNC	ENSG00000236666				14	0	0	4	6	60
BMS1P20	0	genome.wustl.edu	37	22	22664606	22664606	+	RNA	SNP	A	A	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	22	22664606	22664606	A	G	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				27	0	0	23	3	11.5385
RFPL2	0	genome.wustl.edu	37	22	32588982	32588982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	22	32588982	32588982	G	A	SNP	RFPL2	ENST00000400237	human	ensembl	74_37	-1	known	missense	c.463	p.R155W	0.001	pfam_RDM_domain_RFPL	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	RFPL2	HGNC	ENSG00000128253				234	0	0	43	42	49.4118
PKDREJ	0	genome.wustl.edu	37	22	46657285	46657285	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	22	46657285	46657285	C	A	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.1935	p.L645F	0.132	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				243	0	0	72	11	13.253
PHLDB2	0	genome.wustl.edu	37	3	111603422	111603422	+	Silent	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	3	111603422	111603422	G	A	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	silent	c.498	p.G166	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824				135	0	0	64	19	22.8916
ZBTB38	0	genome.wustl.edu	37	3	141161650	141161650	+	Silent	SNP	A	A	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	3	141161650	141161650	A	G	SNP	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	silent	c.423	p.E141	0.530	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311				125	0	0	36	52	59.0909
PLSCR2	0	genome.wustl.edu	37	3	146177815	146177815	+	Silent	SNP	C	C	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	3	146177815	146177815	C	T	SNP	PLSCR2	ENST00000497985	human	ensembl	74_37	-1	putative	silent	c.96	p.Q32	0.000	NULL	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR2	HGNC	ENSG00000163746				23	0	0	11	3	21.4286
AGTR1	0	genome.wustl.edu	37	3	148459062	148459062	+	Silent	SNP	T	T	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	3	148459062	148459062	T	G	SNP	AGTR1	ENST00000349243	human	ensembl	74_37	+1	known	silent	c.240	p.T80	0.893	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Formyl_pep_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ATII_AT1_rcpt,prints_ATII_rcpt,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Formyl_pep_rcpt,prints_Brdyknn_rcpt	-	no_errors	AGTR1	HGNC	ENSG00000144891				74	0	0	42	22	34.375
KCNH8	0	genome.wustl.edu	37	3	19498281	19498281	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	3	19498281	19498281	C	G	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.1847	p.A616G	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				149	0	0	60	13	17.8082
RBM6	0	genome.wustl.edu	37	3	50103862	50103862	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	3	50103862	50103862	G	T	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	missense	c.2870	p.C957F	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				406	0	0	119	19	13.7681
TLR6	0	genome.wustl.edu	37	4	38829331	38829331	+	Silent	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	4	38829331	38829331	G	A	SNP	TLR6	ENST00000381950	human	ensembl	74_37	-1	known	silent	c.1764	p.I588	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,pfam_Cys-rich_flank_reg_C,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR6	HGNC	ENSG00000174130				177	1	0.561798	57	27	32.1429
DCK	0	genome.wustl.edu	37	4	71889409	71889409	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	4	71889409	71889409	C	A	SNP	DCK	ENST00000286648	human	ensembl	74_37	+1	known	missense	c.535	p.Q179K	1.000	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase	-	no_errors	DCK	HGNC	ENSG00000156136				139	1	0.714286	37	4	9.7561
H2AFY	0	genome.wustl.edu	37	5	134679099	134679099	+	Silent	SNP	C	C	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	5	134679099	134679099	C	A	SNP	H2AFY	ENST00000511689	human	ensembl	74_37	-1	known	silent	c.804	p.L268	1.000	pfam_Macro_dom,smart_Macro_dom,pirsf_Core_histone_macro-H2A,pfscan_Macro_dom	pfam_Macro_dom,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_Macro_dom,pirsf_Core_histone_macro-H2A,prints_Histone_H2A,pfscan_Macro_dom	-	no_errors	H2AFY	HGNC	ENSG00000113648				238	0	0	62	4	6.06061
BRD8	0	genome.wustl.edu	37	5	137503737	137503737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	5	137503737	137503737	C	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.673	p.G225C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				230	0	0	40	22	35.4839
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				236	0	0	38	27	41.5385
PCDHA12	0	genome.wustl.edu	37	5	140257093	140257093	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	5	140257093	140257093	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	missense	c.2036	p.S679L	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				100	0	0	9	18	66.6667
DBN1	0	genome.wustl.edu	37	5	176885499	176885499	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	5	176885499	176885499	T	C	SNP	DBN1	ENST00000292385	human	ensembl	74_37	-1	known	missense	c.1342	p.I448V	0.008	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	DBN1	HGNC	ENSG00000113758				194	0	0	50	7	12.2807
PRDM9	0	genome.wustl.edu	37	5	23522495	23522495	+	Silent	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	5	23522495	23522495	G	A	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	silent	c.591	p.P197	0.981	pfam_SSXRD_motif	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				269	0	0	71	7	8.97436
OCLN	0	genome.wustl.edu	37	5	68809860	68809860	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	5	68809860	68809860	A	G	SNP	OCLN	ENST00000355237	human	ensembl	74_37	+1	known	missense	c.815	p.D272G	0.153	pirsf_Occludin	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel,pirsf_Occludin,prints_Occludin	-	no_errors	OCLN	HGNC	ENSG00000197822				96	0	0	25	10	28.5714
HLA-G	0	genome.wustl.edu	37	6	29795657	29795657	+	Silent	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	6	29795657	29795657	G	A	SNP	HLA-G	ENST00000376828	human	ensembl	74_37	+1	known	silent	c.51	p.L17	0.015	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-G	HGNC	ENSG00000204632				111	0	0	29	2	6.45161
NQO2	0	genome.wustl.edu	37	6	3017158	3017158	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	6	3017158	3017158	C	G	SNP	NQO2	ENST00000338130	human	ensembl	74_37	+1	known	missense	c.458	p.A153G	0.561	pfam_Flavodoxin_fold,pfam_FMN_Rdtase-like	pfam_Flavodoxin_fold,pfam_FMN_Rdtase-like	-	no_errors	NQO2	HGNC	ENSG00000124588				114	0	0	17	5	22.7273
HSPA1A	0	genome.wustl.edu	37	6	31785228	31785228	+	Silent	SNP	G	G	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	6	31785228	31785228	G	C	SNP	HSPA1A	ENST00000375651	human	ensembl	74_37	+1	known	silent	c.1695	p.A565	0.134	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1A	HGNC	ENSG00000204389				52	0	0	32	2	5.88235
LRRC1	0	genome.wustl.edu	37	6	53764636	53764636	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	6	53764636	53764636	T	A	SNP	LRRC1	ENST00000370888	human	ensembl	74_37	+1	known	nonsense	c.734	p.L245*	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269				136	0	0	65	17	20.7317
FAM46A	0	genome.wustl.edu	37	6	82461589	82461589	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	6	82461589	82461589	G	T	SNP	FAM46A	ENST00000369754	human	ensembl	74_37	-1	known	missense	c.327	p.F109L	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46A	HGNC	ENSG00000112773				194	0	0	36	14	28
CNTNAP2	0	genome.wustl.edu	37	7	146536859	146536859	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	7	146536859	146536859	T	G	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.265	p.F89V	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				98	0	0	41	10	19.6078
WBSCR17	0	genome.wustl.edu	37	7	70800605	70800605	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	7	70800605	70800605	T	C	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.308	p.L103P	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				110	0	0	32	35	52.2388
MIOS	0	genome.wustl.edu	37	7	7612723	7612723	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	7	7612723	7612723	G	C	SNP	MIOS	ENST00000340080	human	ensembl	74_37	+1	known	missense	c.617	p.R206P	1.000	smart_WD40_repeat	smart_WD40_repeat	-	no_errors	MIOS	HGNC	ENSG00000164654				68	0	0	53	12	18.4615
CYHR1	0	genome.wustl.edu	37	8	145689777	145689777	+	Silent	SNP	G	G	C			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	8	145689777	145689777	G	C	SNP	CYHR1	ENST00000306145	human	ensembl	74_37	-1	known	silent	c.312	p.G104	0.858	NULL	NULL	-	no_errors	CYHR1	HGNC	ENSG00000187954				183	0	0	42	16	27.5862
ERLIN2	0	genome.wustl.edu	37	8	37611483	37611483	+	Silent	SNP	T	T	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	8	37611483	37611483	T	A	SNP	ERLIN2	ENST00000276461	human	ensembl	74_37	+1	known	silent	c.870	p.A290	0.979	NULL	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN2	HGNC	ENSG00000147475				82	0	0	36	17	32.0755
LAMC3	0	genome.wustl.edu	37	9	133901754	133901754	+	Silent	SNP	C	C	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	9	133901754	133901754	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.456	p.R152	0.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				119	0	0	21	38	64.4068
TCEAL3	0	genome.wustl.edu	37	X	102864220	102864220	+	Silent	SNP	C	C	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	X	102864220	102864220	C	A	SNP	TCEAL3	ENST00000243286	human	ensembl	74_37	+1	known	silent	c.228	p.G76	0.010	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL3	HGNC	ENSG00000196507				364	1	0.273973	64	9	12.3288
CSF2RA	0	genome.wustl.edu	37	X	1424540	1424540	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	X	1424540	1424540	A	G	SNP	CSF2RA	ENST00000381509	human	ensembl	74_37	+1	known	missense	c.1145	p.H382R	0.016	NULL	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	CSF2RA	HGNC	ENSG00000198223				38	0	0	3	5	62.5
CNKSR2	0	genome.wustl.edu	37	X	21450741	21450741	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	X	21450741	21450741	G	T	SNP	CNKSR2	ENST00000379510	human	ensembl	74_37	+1	known	missense	c.240	p.L80F	1.000	superfamily_SAM/pointed	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970				261	0	0	68	8	10.5263
MAGEB1	0	genome.wustl.edu	37	X	30269583	30269583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	X	30269583	30269583	C	T	SNP	MAGEB1	ENST00000378981	human	ensembl	74_37	+1	known	missense	c.973	p.R325C	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107				172	0	0	19	18	48.6486
WAS	0	genome.wustl.edu	37	X	48544341	48544341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	X	48544341	48544341	G	A	SNP	WAS	ENST00000376701	human	ensembl	74_37	+1	known	missense	c.470	p.R157H	1.000	NULL	pfam_WH1/EVH1,pfam_CRIB_dom,pfam_WH2_dom,superfamily_WASP_C,smart_WH1/EVH1,smart_CRIB_dom,smart_WH2_dom,pfscan_CRIB_dom,pfscan_WH1/EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285				111	0	0	9	5	35.7143
FAM104B	0	genome.wustl.edu	37	X	55172537	55172537	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	X	55172537	55172537	G	A	SNP	FAM104B	ENST00000425133	human	ensembl	74_37	-1	known	nonsense	c.331	p.R111*	0.156	NULL	NULL	-	no_errors	FAM104B	HGNC	ENSG00000182518				76	0	0	23	3	11.5385
P2RY4	0	genome.wustl.edu	37	X	69478801	69478801	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	X	69478801	69478801	C	G	SNP	P2RY4	ENST00000374519	human	ensembl	74_37	-1	known	missense	c.674	p.R225P	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y4_rcpt,prints_GPCR_Rhodpsn,prints_P2Y2_rcpt	-	no_errors	P2RY4	HGNC	ENSG00000186912				71	0	0	13	5	27.7778
NEIL1	0	genome.wustl.edu	37	15	75641581	75641582	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	15	75641581	75641582	TA	-	DEL	NEIL1	ENST00000355059	human	ensembl	74_37	+1	known	frame_shift_del	c.335_336	p.C113fs	1.000:0.998	pfam_DNA_glycosylase/AP_lyase_cat,superfamily_DNA_glycosylase/AP_lyase_cat,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398				114	0	0	26	7	21.2121
MUC16	0	genome.wustl.edu	37	19	9045953	9045954	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	19	9045953	9045954	AG	-	DEL	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	frame_shift_del	c.35678_35677	p.L11893fs	0.122:0.100	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				253	0	0	52	11	17.4603
TAPT1	0	genome.wustl.edu	37	4	16189980	16189981	+	Splice_Site	INS	-	-	A			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	4	16189980	16189981	-	A	INS	TAPT1	ENST00000405303	human	ensembl	74_37	-1	known	splice_site_ins	c.613-3_613-2	e5-2	0.999:0.159	-	-	-	no_errors	TAPT1	HGNC	ENSG00000169762				40	0	0	18	2	10
SYNCRIP	0	genome.wustl.edu	37	6	86328633	86328634	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	6	86328633	86328634	-	T	INS	SYNCRIP	ENST00000369622	human	ensembl	74_37	-1	known	frame_shift_ins	c.1183_1182	p.D394fs	1.000:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316				111	0	0	38	9	19.1489
CAV2	0	genome.wustl.edu	37	7	116140362	116140365	+	Frame_Shift_Del	DEL	GACA	GACA	-			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	GACA	GACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	7	116140362	116140365	GACA	-	DEL	CAV2	ENST00000222693	human	ensembl	74_37	+1	known	frame_shift_del	c.199_202	p.D67fs	1.000:1.000:1.000:1.000	pfam_Caveolin	pfam_Caveolin	-	no_errors	CAV2	HGNC	ENSG00000105971				121	0	0	45	42	48.2759
GPR112	0	genome.wustl.edu	37	X	135474445	135474447	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-BR-8295-01A-11D-2340-08	TCGA-BR-8295-10A-01D-2340-08	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6bcaea6-ed22-4d55-9dc5-287205bea705	bf645fb4-90f8-4f80-93d4-59f6b049116a	X	135474445	135474447	GAT	-	DEL	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	in_frame_del	c.7966_7968	p.D2657in_frame_del	0.447:0.448:0.101	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				243	0	0	71	4	5.33333
