Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
VANGL1	0	genome.wustl.edu	37	1	116226631	116226631	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	116226631	116226631	C	A	SNP	VANGL1	ENST00000310260	human	ensembl	74_37	+1	known	nonsense	c.1013	p.S338*	0.975	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL1	HGNC	ENSG00000173218				140	0	0	45	16	26.2295
PRAMEF2	0	genome.wustl.edu	37	1	12919064	12919064	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	12919064	12919064	T	G	SNP	PRAMEF2	ENST00000240189	human	ensembl	74_37	+1	known	missense	c.200	p.V67G	0.198	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952				159	1	0.625	61	7	10.2941
HRNR	0	genome.wustl.edu	37	1	152186120	152186120	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	152186120	152186120	A	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.7985	p.L2662S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				40	0	0	17	3	15
CADM3	0	genome.wustl.edu	37	1	159170642	159170642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	159170642	159170642	C	T	SNP	CADM3	ENST00000368124	human	ensembl	74_37	+1	known	missense	c.1229	p.A410V	0.999	NULL	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM3	HGNC	ENSG00000162706				178	0	0	74	4	5.12821
ATP1A4	0	genome.wustl.edu	37	1	160141163	160141163	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	160141163	160141163	C	T	SNP	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	silent	c.1614	p.N538	0.264	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				118	0	0	66	5	7.04225
CFHR1	0	genome.wustl.edu	37	1	196799765	196799765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	196799765	196799765	G	A	SNP	CFHR1	ENST00000320493	human	ensembl	74_37	+1	known	missense	c.743	p.R248Q	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR1	HGNC	ENSG00000244414				168	1	0.591716	93	36	27.907
LRRN2	0	genome.wustl.edu	37	1	204588700	204588700	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	204588700	204588700	C	G	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.421	p.A141P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				315	0	0	97	34	25.9542
HSPG2	0	genome.wustl.edu	37	1	22199882	22199882	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	22199882	22199882	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3779	p.G1260A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				331	1	0.301205	114	53	31.7365
TLR5	0	genome.wustl.edu	37	1	223285764	223285764	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	223285764	223285764	C	A	SNP	TLR5	ENST00000342210	human	ensembl	74_37	-1	known	missense	c.610	p.A204S	0.000	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554				153	0	0	69	9	11.5385
OBSCN	0	genome.wustl.edu	37	1	228434292	228434292	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	228434292	228434292	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3821	p.A1274G	0.014	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				193	0	0	58	37	38.9474
MTR	0	genome.wustl.edu	37	1	237026774	237026774	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	237026774	237026774	C	T	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	silent	c.2325	p.I775	0.024	pfam_Cobalamin-bd,superfamily_Cobalamin-bd,pirsf_MetH,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				64	0	0	35	5	12.5
HMGN2	0	genome.wustl.edu	37	1	26801762	26801762	+	RNA	SNP	G	G	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	26801762	26801762	G	T	SNP	HMGN2	ENST00000460563	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGN2	HGNC	ENSG00000198830				17	0	0	6	8	57.1429
TTC4	0	genome.wustl.edu	37	1	55186864	55186864	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	1	55186864	55186864	G	A	SNP	TTC4	ENST00000371281	human	ensembl	74_37	+1	known	silent	c.420	p.V140	0.677	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC4	HGNC	ENSG00000243725				92	0	0	52	6	10.3448
GAD2	0	genome.wustl.edu	37	10	26581413	26581413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	10	26581413	26581413	C	T	SNP	GAD2	ENST00000259271	human	ensembl	74_37	+1	known	missense	c.1406	p.A469V	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD2	HGNC	ENSG00000136750				145	0	0	104	12	10.3448
PTCHD3	0	genome.wustl.edu	37	10	27688039	27688039	+	Silent	SNP	A	A	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	10	27688039	27688039	A	T	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	silent	c.1488	p.T496	0.993	pfam_Patched,pfscan_SSD	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				187	0	0	140	8	5.40541
CHAT	0	genome.wustl.edu	37	10	50835788	50835788	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	10	50835788	50835788	C	T	SNP	CHAT	ENST00000337653	human	ensembl	74_37	+1	known	silent	c.1068	p.D356	0.999	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CHAT	HGNC	ENSG00000070748				99	0	0	79	6	7.05882
CCAR1	0	genome.wustl.edu	37	10	70496773	70496773	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	10	70496773	70496773	C	A	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	missense	c.214	p.Q72K	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				62	0	0	27	18	40
CEP55	0	genome.wustl.edu	37	10	95275202	95275202	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	10	95275202	95275202	A	C	SNP	CEP55	ENST00000371485	human	ensembl	74_37	+1	known	missense	c.569	p.Q190P	1.000	pfam_EABR	pfam_EABR	-	no_errors	CEP55	HGNC	ENSG00000138180				185	0	0	90	7	7.21649
RRP12	0	genome.wustl.edu	37	10	99141471	99141471	+	Splice_Site	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	10	99141471	99141471	C	G	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	splice_site	c.1320+1	e11+1	1.000	-	-	-	no_errors	RRP12	HGNC	ENSG00000052749				73	0	0	28	6	17.6471
MSANTD4	0	genome.wustl.edu	37	11	105881310	105881310	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	11	105881310	105881310	T	C	SNP	MSANTD4	ENST00000301919	human	ensembl	74_37	-1	known	missense	c.335	p.D112G	0.999	NULL	NULL	-	no_errors	MSANTD4	HGNC	ENSG00000170903				147	0	0	135	9	6.25
CLDN25	0	genome.wustl.edu	37	11	113650730	113650730	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	11	113650730	113650730	G	T	SNP	CLDN25	ENST00000453129	human	ensembl	74_37	+1	known	missense	c.213	p.L71F	0.953	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN25	HGNC	ENSG00000228607				250	1	0.398406	103	15	12.7119
FXYD6	0	genome.wustl.edu	37	11	117711023	117711023	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	11	117711023	117711023	C	T	SNP	FXYD6	ENST00000524841	human	ensembl	74_37	-1	known	silent	c.270	p.P90	0.000	NULL	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD6	HGNC	ENSG00000137726				162	0	0	62	8	11.4286
OR10G9	0	genome.wustl.edu	37	11	123893746	123893746	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	11	123893746	123893746	G	A	SNP	OR10G9	ENST00000375024	human	ensembl	74_37	+1	known	silent	c.27	p.A9	0.002	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G9	HGNC	ENSG00000236981				281	0	0	160	16	9.09091
MRGPRX4	0	genome.wustl.edu	37	11	18194966	18194966	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	11	18194966	18194966	C	T	SNP	MRGPRX4	ENST00000314254	human	ensembl	74_37	+1	known	missense	c.163	p.R55C	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX4	HGNC	ENSG00000179817				197	0	0	119	33	21.7105
DCDC1	0	genome.wustl.edu	37	11	31327931	31327931	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	11	31327931	31327931	C	A	SNP	DCDC1	ENST00000452803	human	ensembl	74_37	-1	known	missense	c.439	p.A147S	0.000	NULL	pfscan_Doublecortin_dom	-	no_errors	DCDC1	HGNC	ENSG00000170959				89	0	0	45	13	22.4138
GANAB	0	genome.wustl.edu	37	11	62400952	62400952	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	11	62400952	62400952	C	G	SNP	GANAB	ENST00000346178	human	ensembl	74_37	-1	known	missense	c.661	p.A221P	1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GANAB	HGNC	ENSG00000089597				161	0	0	69	19	21.5909
RIN1	0	genome.wustl.edu	37	11	66099763	66099763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	11	66099763	66099763	C	T	SNP	RIN1	ENST00000311320	human	ensembl	74_37	-1	known	missense	c.2336	p.R779Q	0.000	NULL	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN1	HGNC	ENSG00000174791				269	0	0	115	18	13.5338
GAS2L3	0	genome.wustl.edu	37	12	101016092	101016092	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	12	101016092	101016092	C	G	SNP	GAS2L3	ENST00000266754	human	ensembl	74_37	+1	known	missense	c.688	p.H230D	1.000	pfam_GAS2_dom,superfamily_GAS2_dom,smart_GAS2_dom	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354				102	0	0	95	9	8.65385
GAS2L3	0	genome.wustl.edu	37	12	101016095	101016095	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	12	101016095	101016095	C	T	SNP	GAS2L3	ENST00000266754	human	ensembl	74_37	+1	known	nonsense	c.691	p.R231*	1.000	pfam_GAS2_dom,superfamily_GAS2_dom,smart_GAS2_dom	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354				102	0	0	94	9	8.73786
GAS2L3	0	genome.wustl.edu	37	12	101017925	101017925	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	12	101017925	101017925	C	G	SNP	GAS2L3	ENST00000266754	human	ensembl	74_37	+1	known	missense	c.1342	p.P448A	0.002	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354				243	0	0	143	21	12.8049
GAS2L3	0	genome.wustl.edu	37	12	101018070	101018070	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	12	101018070	101018070	C	A	SNP	GAS2L3	ENST00000266754	human	ensembl	74_37	+1	known	missense	c.1487	p.S496Y	0.121	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354				138	1	0.719424	75	14	15.7303
GAS2L3	0	genome.wustl.edu	37	12	101018357	101018357	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	12	101018357	101018357	C	G	SNP	GAS2L3	ENST00000266754	human	ensembl	74_37	+1	known	missense	c.1774	p.Q592E	0.973	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354				94	0	0	48	5	9.43396
KIAA1033	0	genome.wustl.edu	37	12	105558445	105558445	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	12	105558445	105558445	G	A	SNP	KIAA1033	ENST00000332180	human	ensembl	74_37	+1	known	silent	c.3381	p.L1127	1.000	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051				39	0	0	31	2	6.06061
PLA2G1B	0	genome.wustl.edu	37	12	120763699	120763699	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	12	120763699	120763699	C	A	SNP	PLA2G1B	ENST00000308366	human	ensembl	74_37	-1	known	missense	c.159	p.L53F	0.998	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	PLA2G1B	HGNC	ENSG00000170890				310	0	0	141	33	18.9655
HCAR2	0	genome.wustl.edu	37	12	123187315	123187315	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	12	123187315	123187315	G	A	SNP	HCAR2	ENST00000328880	human	ensembl	74_37	-1	known	silent	c.516	p.G172	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	HCAR2	HGNC	ENSG00000182782				138	0	0	88	12	12
LINC00477	0	genome.wustl.edu	37	12	24736768	24736768	+	RNA	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	12	24736768	24736768	C	A	SNP	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				115	1	0.862069	36	9	20
NTN4	0	genome.wustl.edu	37	12	96077367	96077367	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	12	96077367	96077367	C	G	SNP	NTN4	ENST00000343702	human	ensembl	74_37	-1	known	missense	c.1301	p.C434S	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN4	HGNC	ENSG00000074527				100	0	0	74	5	6.32911
RASA3	0	genome.wustl.edu	37	13	114806557	114806557	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	13	114806557	114806557	G	C	SNP	RASA3	ENST00000334062	human	ensembl	74_37	-1	known	missense	c.291	p.I97M	0.417	superfamily_C2_dom,smart_C2_dom	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA3	HGNC	ENSG00000185989				129	0	0	55	14	20.2899
N4BP2L2	0	genome.wustl.edu	37	13	33016759	33016759	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	13	33016759	33016759	C	G	SNP	N4BP2L2	ENST00000399396	human	ensembl	74_37	-1	known	missense	c.1915	p.E639Q	0.441	NULL	superfamily_P-loop_NTPase	-	no_errors	N4BP2L2	HGNC	ENSG00000244754				68	0	0	38	6	13.6364
GPC5	0	genome.wustl.edu	37	13	92101163	92101163	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	13	92101163	92101163	G	A	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	silent	c.312	p.A104	0.779	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				136	1	0.729927	72	27	27.2727
IPO5	0	genome.wustl.edu	37	13	98652834	98652834	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	13	98652834	98652834	G	T	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.1097	p.C366F	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				168	0	0	38	39	50.6494
PRKD1	0	genome.wustl.edu	37	14	30100211	30100211	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	14	30100211	30100211	T	C	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	missense	c.1409	p.E470G	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				111	0	0	55	6	9.83607
ARF6	0	genome.wustl.edu	37	14	50360781	50360781	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	14	50360781	50360781	C	T	SNP	ARF6	ENST00000298316	human	ensembl	74_37	+1	known	silent	c.327	p.D109	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARF6	HGNC	ENSG00000165527				73	0	0	48	4	7.69231
FRMD6	0	genome.wustl.edu	37	14	52186907	52186907	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	14	52186907	52186907	G	A	SNP	FRMD6	ENST00000344768	human	ensembl	74_37	+1	known	missense	c.1159	p.A387T	0.002	NULL	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926				121	0	0	57	5	8.06452
PAPLN	0	genome.wustl.edu	37	14	73730411	73730411	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	14	73730411	73730411	C	T	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	missense	c.2782	p.R928W	0.001	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				113	0	0	43	9	17.3077
DMXL2	0	genome.wustl.edu	37	15	51766637	51766637	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	15	51766637	51766637	C	A	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.7117	p.A2373S	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				124	0	0	32	34	51.5152
MAPK8IP3	0	genome.wustl.edu	37	16	1808983	1808983	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	16	1808983	1808983	C	T	SNP	MAPK8IP3	ENST00000250894	human	ensembl	74_37	+1	known	silent	c.1230	p.R410	0.806	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834				127	0	0	59	6	9.23077
SPN	0	genome.wustl.edu	37	16	29675436	29675436	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	16	29675436	29675436	C	T	SNP	SPN	ENST00000360121	human	ensembl	74_37	+1	known	silent	c.387	p.T129	0.000	NULL	NULL	-	no_errors	SPN	HGNC	ENSG00000197471				130	0	0	76	15	16.4835
MYH1	0	genome.wustl.edu	37	17	10417440	10417440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	17	10417440	10417440	C	T	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.535	p.G179R	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				111	0	0	50	6	10.7143
SLC5A10	0	genome.wustl.edu	37	17	18918411	18918411	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	17	18918411	18918411	G	A	SNP	SLC5A10	ENST00000395647	human	ensembl	74_37	+1	known	silent	c.1188	p.S396	0.917	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A10	HGNC	ENSG00000154025				107	0	0	35	2	5.40541
MYBBP1A	0	genome.wustl.edu	37	17	4457494	4457494	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	17	4457494	4457494	T	C	SNP	MYBBP1A	ENST00000381556	human	ensembl	74_37	-1	known	missense	c.374	p.K125R	0.999	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382				166	0	0	64	5	7.24638
SPATA20	0	genome.wustl.edu	37	17	48628511	48628511	+	Silent	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	17	48628511	48628511	C	A	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	silent	c.1536	p.P512	0.001	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				69	0	0	16	6	27.2727
POLG2	0	genome.wustl.edu	37	17	62488810	62488810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	17	62488810	62488810	G	A	SNP	POLG2	ENST00000539111	human	ensembl	74_37	-1	known	missense	c.769	p.R257C	0.998	NULL	pfam_Anticodon-bd,superfamily_Anticodon-bd	-	no_errors	POLG2	HGNC	ENSG00000256525				77	0	0	36	4	10
KCNJ16	0	genome.wustl.edu	37	17	68128638	68128638	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	17	68128638	68128638	G	A	SNP	KCNJ16	ENST00000283936	human	ensembl	74_37	+1	known	missense	c.410	p.R137H	0.550	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ16	HGNC	ENSG00000153822				74	0	0	82	8	8.88889
TP53	0	genome.wustl.edu	37	17	7577568	7577568	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	17	7577568	7577568	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.713	p.C238F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				110	0	0	44	4	8.33333
SETBP1	0	genome.wustl.edu	37	18	42532485	42532485	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	18	42532485	42532485	G	A	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.3180	p.M1060I	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				67	0	0	42	10	19.2308
RNF165	0	genome.wustl.edu	37	18	44013434	44013434	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	18	44013434	44013434	G	A	SNP	RNF165	ENST00000269439	human	ensembl	74_37	+1	known	missense	c.343	p.E115K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF165	HGNC	ENSG00000141622				79	0	0	29	2	6.45161
CDH20	0	genome.wustl.edu	37	18	59221564	59221564	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	18	59221564	59221564	C	T	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.2042	p.A681V	0.997	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				220	0	0	102	10	8.92857
RDH8	0	genome.wustl.edu	37	19	10132297	10132297	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	19	10132297	10132297	G	A	SNP	RDH8	ENST00000591589	human	ensembl	74_37	+1	known	missense	c.868	p.V290M	0.928	pirsf_17beta_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	RDH8	HGNC	ENSG00000080511				148	1	0.671141	53	10	15.873
CYP4F22	0	genome.wustl.edu	37	19	15651382	15651382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	19	15651382	15651382	C	T	SNP	CYP4F22	ENST00000269703	human	ensembl	74_37	+1	known	missense	c.793	p.R265W	0.788	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F22	HGNC	ENSG00000171954				174	0	0	84	6	6.66667
NWD1	0	genome.wustl.edu	37	19	16860087	16860087	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	19	16860087	16860087	G	C	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.634	p.A212P	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				151	0	0	59	19	24.359
CIC	0	genome.wustl.edu	37	19	42795827	42795827	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	19	42795827	42795827	G	C	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.2816	p.G939A	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				225	0	0	102	34	25
TMC4	0	genome.wustl.edu	37	19	54676754	54676754	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	19	54676754	54676754	G	C	SNP	TMC4	ENST00000301187	human	ensembl	74_37	-1	known	missense	c.59	p.A20G	0.989	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608				372	0	0	181	23	11.2745
LILRB5	0	genome.wustl.edu	37	19	54758651	54758651	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	19	54758651	54758651	G	C	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	missense	c.1175	p.S392C	0.000	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				115	0	0	38	19	33.3333
TTYH1	0	genome.wustl.edu	37	19	54932467	54932467	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	19	54932467	54932467	G	A	SNP	TTYH1	ENST00000376531	human	ensembl	74_37	+1	known	missense	c.322	p.G108S	1.000	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH1	HGNC	ENSG00000167614				128	0	0	48	9	15.7895
PSD4	0	genome.wustl.edu	37	2	113942985	113942985	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	2	113942985	113942985	G	A	SNP	PSD4	ENST00000245796	human	ensembl	74_37	+1	known	nonsense	c.1217	p.W406*	0.494	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD4	HGNC	ENSG00000125637				231	0	0	121	8	6.20155
NEB	0	genome.wustl.edu	37	2	152397310	152397310	+	Silent	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	2	152397310	152397310	C	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.20688	p.L6896	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				83	0	0	40	5	11.1111
RAD51AP2	0	genome.wustl.edu	37	2	17698091	17698091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	2	17698091	17698091	G	A	SNP	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	missense	c.1592	p.T531I	0.000	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				14	0	0	14	7	33.3333
FSIP2	0	genome.wustl.edu	37	2	186672333	186672333	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	2	186672333	186672333	G	C	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.18567	p.E6189D	0.007	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				212	0	0	116	12	9.375
CXXC11	0	genome.wustl.edu	37	2	242814250	242814250	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	2	242814250	242814250	C	T	SNP	CXXC11	ENST00000343216	human	ensembl	74_37	+1	known	silent	c.543	p.T181	0.001	NULL	NULL	-	no_errors	CXXC11	HGNC	ENSG00000188011				32	0	0	15	3	16.6667
RAB10	0	genome.wustl.edu	37	2	26332773	26332773	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	2	26332773	26332773	G	T	SNP	RAB10	ENST00000264710	human	ensembl	74_37	+1	known	nonsense	c.325	p.E109*	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB10	HGNC	ENSG00000084733				106	0	0	53	9	14.5161
TMEM178A	0	genome.wustl.edu	37	2	39893123	39893123	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	2	39893123	39893123	G	A	SNP	TMEM178A	ENST00000281961	human	ensembl	74_37	+1	known	silent	c.9	p.P3	0.998	NULL	NULL	-	no_errors	TMEM178A	HGNC	ENSG00000152154				13	0	0	2	2	50
ESF1	0	genome.wustl.edu	37	20	13763346	13763346	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	20	13763346	13763346	C	G	SNP	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	missense	c.441	p.K147N	0.758	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048				47	0	0	34	2	5.55556
TTI1	0	genome.wustl.edu	37	20	36627656	36627656	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	20	36627656	36627656	C	T	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	silent	c.2727	p.Q909	0.998	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				141	0	0	75	8	9.63855
ZHX3	0	genome.wustl.edu	37	20	39833134	39833134	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	20	39833134	39833134	G	A	SNP	ZHX3	ENST00000309060	human	ensembl	74_37	-1	known	silent	c.423	p.N141	0.974	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ZHX3	HGNC	ENSG00000174306				121	0	0	116	13	10.0775
MCM8	0	genome.wustl.edu	37	20	5948171	5948171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	20	5948171	5948171	G	A	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	missense	c.965	p.S322N	1.000	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				139	0	0	73	50	40.6504
C20orf166-AS1	0	genome.wustl.edu	37	20	61143364	61143364	+	RNA	SNP	T	T	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	20	61143364	61143364	T	C	SNP	C20orf166-AS1	ENST00000412495	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.042	-	-	-	no_errors	C20orf166-AS1	HGNC	ENSG00000174403				55	0	0	35	4	10.2564
RIPK4	0	genome.wustl.edu	37	21	43169357	43169357	+	Silent	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	21	43169357	43169357	C	G	SNP	RIPK4	ENST00000352483	human	ensembl	74_37	-1	known	silent	c.630	p.A210	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK4	HGNC	ENSG00000183421				83	0	0	41	4	8.88889
TOM1	0	genome.wustl.edu	37	22	35719519	35719519	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	22	35719519	35719519	G	A	SNP	TOM1	ENST00000411850	human	ensembl	74_37	+1	known	missense	c.397	p.D133N	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_VHS	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1	HGNC	ENSG00000100284				199	0	0	95	22	18.8034
LMF2	0	genome.wustl.edu	37	22	50944128	50944128	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	22	50944128	50944128	G	A	SNP	LMF2	ENST00000474879	human	ensembl	74_37	-1	known	silent	c.891	p.H297	0.000	pfam_LMF	pfam_LMF	-	no_errors	LMF2	HGNC	ENSG00000100258				106	0	0	43	5	10.4167
FANCD2	0	genome.wustl.edu	37	3	10138069	10138069	+	Silent	SNP	T	T	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	3	10138069	10138069	T	G	SNP	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	silent	c.4098	p.L1366	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554				204	0	0	91	9	9
ATP2B2	0	genome.wustl.edu	37	3	10417266	10417266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	3	10417266	10417266	C	T	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	missense	c.1264	p.V422M	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				72	0	0	58	6	9.375
MBD4	0	genome.wustl.edu	37	3	129152786	129152786	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	3	129152786	129152786	G	T	SNP	MBD4	ENST00000249910	human	ensembl	74_37	-1	known	missense	c.1318	p.P440T	1.000	superfamily_DNA_glycosylase,pirsf_Me_CpG-bd_MBD4	pfam_Methyl_CpG_DNA-bd,pfam_HhH-GPD_domain,superfamily_DNA-bd_dom,superfamily_DNA_glycosylase,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MBD4,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD4	HGNC	ENSG00000129071				169	0	0	100	15	13.0435
EPHB1	0	genome.wustl.edu	37	3	134920403	134920403	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	3	134920403	134920403	T	C	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	missense	c.2218	p.Y740H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				390	0	0	140	21	13.0435
FBLN2	0	genome.wustl.edu	37	3	13669425	13669425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	3	13669425	13669425	G	A	SNP	FBLN2	ENST00000404922	human	ensembl	74_37	+1	known	missense	c.2525	p.R842H	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_EG-like_dom,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd_dom,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520				163	0	0	58	5	7.93651
CLDN11	0	genome.wustl.edu	37	3	170150502	170150502	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	3	170150502	170150502	G	A	SNP	CLDN11	ENST00000064724	human	ensembl	74_37	+1	known	silent	c.582	p.A194	0.782	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin11,prints_Claudin	-	no_errors	CLDN11	HGNC	ENSG00000013297				175	0	0	102	13	11.3043
ECT2	0	genome.wustl.edu	37	3	172486836	172486836	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	3	172486836	172486836	C	T	SNP	ECT2	ENST00000427830	human	ensembl	74_37	+1	known	missense	c.1238	p.T413I	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_BRCT_dom,superfamily_DH-domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DH-domain,pfscan_BRCT_dom,pfscan_DH-domain	-	no_errors	ECT2	HGNC	ENSG00000114346				128	0	0	95	18	15.9292
ATP13A5	0	genome.wustl.edu	37	3	193081122	193081122	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	3	193081122	193081122	G	T	SNP	ATP13A5	ENST00000342358	human	ensembl	74_37	-1	known	missense	c.287	p.S96Y	0.998	pfam_ATPase_P-typ_Cation_typ_V,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A5	HGNC	ENSG00000187527				126	0	0	119	7	5.55556
P4HTM	0	genome.wustl.edu	37	3	49042339	49042339	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	3	49042339	49042339	C	G	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.933	p.S311R	0.096	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				144	0	0	58	24	29.2683
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				279	1	0.357143	58	39	40.2062
TRMT10A	0	genome.wustl.edu	37	4	100470352	100470352	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	4	100470352	100470352	C	T	SNP	TRMT10A	ENST00000273962	human	ensembl	74_37	-1	known	missense	c.913	p.D305N	1.000	pirsf_tRNA_MeTfrase_TRM10	pfam_tRNA_m1G_MeTrfase,pirsf_tRNA_MeTfrase_TRM10	-	no_errors	TRMT10A	HGNC	ENSG00000145331				188	0	0	126	21	14.2857
PCDH10	0	genome.wustl.edu	37	4	134073378	134073378	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	4	134073378	134073378	G	C	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.2083	p.G695R	0.972	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				105	0	0	42	9	17.6471
EPHA5	0	genome.wustl.edu	37	4	66217148	66217148	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	4	66217148	66217148	G	A	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	missense	c.2467	p.R823W	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				147	0	0	72	6	7.69231
UBA6-AS1	0	genome.wustl.edu	37	4	68928339	68928339	+	RNA	SNP	T	T	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	4	68928339	68928339	T	A	SNP	UBA6-AS1	ENST00000500538	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UBA6-AS1	HGNC	ENSG00000248049				207	0	0	97	13	11.8182
CTNND2	0	genome.wustl.edu	37	5	11364949	11364949	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	5	11364949	11364949	G	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.1231	p.R411W	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				136	1	0.729927	67	9	11.8421
BRD8	0	genome.wustl.edu	37	5	137503737	137503737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	5	137503737	137503737	C	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.673	p.G225C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				244	0	0	66	45	40.5405
F2R	0	genome.wustl.edu	37	5	76028449	76028449	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	5	76028449	76028449	C	T	SNP	F2R	ENST00000319211	human	ensembl	74_37	+1	known	silent	c.399	p.V133	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thrmbn_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thrmbn_rcpt,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	F2R	HGNC	ENSG00000181104				257	0	0	139	29	17.2619
MCHR2	0	genome.wustl.edu	37	6	100382330	100382330	+	Silent	SNP	A	A	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	6	100382330	100382330	A	G	SNP	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	silent	c.651	p.Y217	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034				179	0	0	119	14	10.5263
FAM162B	0	genome.wustl.edu	37	6	117083148	117083148	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	6	117083148	117083148	C	A	SNP	FAM162B	ENST00000368557	human	ensembl	74_37	-1	known	missense	c.382	p.A128S	0.832	pfam_DUF1075	pfam_DUF1075	-	no_errors	FAM162B	HGNC	ENSG00000183807				203	0	0	122	19	13.4752
L3MBTL3	0	genome.wustl.edu	37	6	130425629	130425629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	6	130425629	130425629	C	T	SNP	L3MBTL3	ENST00000361794	human	ensembl	74_37	+1	known	missense	c.1795	p.R599C	1.000	NULL	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945				255	0	0	119	12	9.16031
TULP4	0	genome.wustl.edu	37	6	158870124	158870124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	6	158870124	158870124	G	A	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	missense	c.640	p.G214S	1.000	superfamily_WD40_repeat_dom	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				144	0	0	64	13	16.8831
DLL1	0	genome.wustl.edu	37	6	170592399	170592399	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	6	170592399	170592399	G	T	SNP	DLL1	ENST00000366756	human	ensembl	74_37	-1	known	missense	c.1968	p.D656E	0.003	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719				106	0	0	47	7	12.963
SYNGAP1	0	genome.wustl.edu	37	6	33410696	33410696	+	Silent	SNP	A	A	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	6	33410696	33410696	A	C	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	silent	c.2367	p.P789	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				208	1	0.478469	110	19	14.7287
FKBP5	0	genome.wustl.edu	37	6	35586920	35586920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	6	35586920	35586920	C	T	SNP	FKBP5	ENST00000357266	human	ensembl	74_37	-1	known	missense	c.461	p.R154Q	0.001	NULL	pfam_PPIase_FKBP_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP5	HGNC	ENSG00000096060				136	0	0	51	7	12.069
PGM3	0	genome.wustl.edu	37	6	83892684	83892684	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	6	83892684	83892684	T	A	SNP	PGM3	ENST00000513973	human	ensembl	74_37	-1	known	missense	c.471	p.L157F	0.924	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375				113	1	0.877193	57	22	27.8481
LRRC4	0	genome.wustl.edu	37	7	127670327	127670327	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	7	127670327	127670327	C	G	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.367	p.A123P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				132	0	0	61	16	20.7792
AGMO	0	genome.wustl.edu	37	7	15584510	15584510	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	7	15584510	15584510	T	A	SNP	AGMO	ENST00000342526	human	ensembl	74_37	-1	known	missense	c.296	p.Y99F	0.997	NULL	pfam_Fatty_acid_hydroxylase	-	no_errors	AGMO	HGNC	ENSG00000187546				224	0	0	110	22	16.6667
SOSTDC1	0	genome.wustl.edu	37	7	16502239	16502239	+	Silent	SNP	G	G	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	7	16502239	16502239	G	T	SNP	SOSTDC1	ENST00000307068	human	ensembl	74_37	-1	known	silent	c.555	p.A185	0.998	pfam_Sclerostin/SOSTDC1	pfam_Sclerostin/SOSTDC1,pfam_Cys_knot,pfam_DAN,pfscan_Cys_knot_C	-	no_errors	SOSTDC1	HGNC	ENSG00000171243				219	1	0.454545	149	46	23.5897
BMPER	0	genome.wustl.edu	37	7	34118719	34118719	+	Silent	SNP	G	G	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	7	34118719	34118719	G	C	SNP	BMPER	ENST00000297161	human	ensembl	74_37	+1	known	silent	c.1329	p.S443	0.663	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619				203	0	0	90	41	31.2977
CAMK2B	0	genome.wustl.edu	37	7	44259793	44259793	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	7	44259793	44259793	C	T	SNP	CAMK2B	ENST00000395749	human	ensembl	74_37	-1	known	silent	c.1869	p.T623	0.998	pfam_Ca/CaM-dep_prot_kinase-assoc	pfam_Prot_kinase_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2B	HGNC	ENSG00000058404				63	0	0	28	4	12.5
WBSCR17	0	genome.wustl.edu	37	7	70800582	70800582	+	Silent	SNP	T	T	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	7	70800582	70800582	T	G	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	silent	c.285	p.G95	0.999	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				132	1	0.75188	48	26	35.1351
SEMA3A	0	genome.wustl.edu	37	7	83614755	83614755	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	7	83614755	83614755	C	G	SNP	SEMA3A	ENST00000265362	human	ensembl	74_37	-1	known	missense	c.1491	p.K497N	0.941	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3A	HGNC	ENSG00000075213				175	0	0	135	21	13.4615
MTUS1	0	genome.wustl.edu	37	8	17601257	17601257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	8	17601257	17601257	C	T	SNP	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	missense	c.2143	p.D715N	0.002	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422				143	0	0	61	15	19.7368
PXDNL	0	genome.wustl.edu	37	8	52384808	52384808	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	8	52384808	52384808	C	T	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.751	p.V251I	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				203	1	0.490196	75	7	8.53659
PREX2	0	genome.wustl.edu	37	8	69009347	69009347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	8	69009347	69009347	G	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.2464	p.V822M	0.995	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				146	0	0	75	9	10.7143
SLC2A6	0	genome.wustl.edu	37	9	136341384	136341384	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	9	136341384	136341384	G	A	SNP	SLC2A6	ENST00000371899	human	ensembl	74_37	-1	known	silent	c.537	p.F179	0.440	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A6	HGNC	ENSG00000160326				95	0	0	48	6	11.1111
APBA1	0	genome.wustl.edu	37	9	72132004	72132004	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	9	72132004	72132004	C	T	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	silent	c.123	p.P41	0.200	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				13	0	0	7	3	30
SPATA31D1	0	genome.wustl.edu	37	9	84609979	84609979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	9	84609979	84609979	C	T	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.4594	p.R1532W	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				42	0	0	25	3	10.7143
KCNE1L	0	genome.wustl.edu	37	X	108868162	108868162	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	108868162	108868162	C	A	SNP	KCNE1L	ENST00000372101	human	ensembl	74_37	-1	known	missense	c.88	p.G30C	0.334	NULL	NULL	-	no_errors	KCNE1L	HGNC	ENSG00000176076				48	0	0	15	12	44.4444
CAPN6	0	genome.wustl.edu	37	X	110494255	110494255	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	110494255	110494255	G	A	SNP	CAPN6	ENST00000324068	human	ensembl	74_37	-1	known	nonsense	c.1048	p.R350*	0.989	smart_Peptidase_C2_calpain_cat,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,pfam_C2_dom,superfamily_Calpain_domain_III,superfamily_C2_dom,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_C2_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN6	HGNC	ENSG00000077274				950	0	0	453	59	11.5234
STAG2	0	genome.wustl.edu	37	X	123220506	123220506	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	123220506	123220506	G	A	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	missense	c.3163	p.D1055N	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				190	0	0	101	10	9.00901
SLITRK2	0	genome.wustl.edu	37	X	144905642	144905642	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	144905642	144905642	G	C	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	missense	c.1699	p.E567Q	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				149	0	0	90	10	10
MIR892A	0	genome.wustl.edu	37	X	145078219	145078219	+	RNA	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	145078219	145078219	C	T	SNP	MIR892A	ENST00000401124	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR892A	HGNC	ENSG00000215943				358	0	0	162	23	12.4324
ATP2B3	0	genome.wustl.edu	37	X	152845624	152845624	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	152845624	152845624	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	silent	c.3531	p.P1177	0.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				252	1	0.395257	134	27	16.7702
SH3KBP1	0	genome.wustl.edu	37	X	19606793	19606793	+	Silent	SNP	C	C	T			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	19606793	19606793	C	T	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	silent	c.1266	p.P422	0.002	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				339	0	0	151	22	12.7168
SLC9A7	0	genome.wustl.edu	37	X	46541843	46541843	+	Silent	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	46541843	46541843	G	A	SNP	SLC9A7	ENST00000328306	human	ensembl	74_37	-1	known	silent	c.453	p.F151	0.955	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923				106	0	0	48	11	18.6441
ZNF182	0	genome.wustl.edu	37	X	47836536	47836536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	47836536	47836536	G	A	SNP	ZNF182	ENST00000305127	human	ensembl	74_37	-1	known	missense	c.950	p.P317L	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF182	HGNC	ENSG00000147118				151	1	0.657895	97	7	6.73077
HUWE1	0	genome.wustl.edu	37	X	53576261	53576261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	53576261	53576261	G	A	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.9694	p.R3232C	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				287	0	0	155	20	11.4286
USP51	0	genome.wustl.edu	37	X	55515254	55515254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	55515254	55515254	G	A	SNP	USP51	ENST00000500968	human	ensembl	74_37	-1	known	missense	c.119	p.A40V	0.602	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP51	HGNC	ENSG00000247746				67	0	0	34	5	12.8205
STARD8	0	genome.wustl.edu	37	X	67940201	67940201	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	67940201	67940201	G	C	SNP	STARD8	ENST00000374599	human	ensembl	74_37	+1	known	missense	c.1985	p.G662A	1.000	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052				42	0	0	15	10	40
ATRX	0	genome.wustl.edu	37	X	76856165	76856165	+	RNA	SNP	A	A	G			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	76856165	76856165	A	G	SNP	ATRX	ENST00000479487	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATRX	HGNC	ENSG00000085224				36	0	0	39	7	15.2174
FAM71B	0	genome.wustl.edu	37	5	156590425	156590425	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	5	156590425	156590425	A	-	DEL	FAM71B	ENST00000302938	human	ensembl	74_37	-1	known	frame_shift_del	c.851	p.I284fs	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613				207	0	0	116	7	5.69106
TENM1	0	genome.wustl.edu	37	X	124097522	124097524	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8296-01A-11D-2340-08	TCGA-BR-8296-10A-01D-2340-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	64c0f192-0cd5-4a42-98e9-da539ffbdb8e	97c72465-c307-4e73-8a74-9d5c6da3680e	X	124097522	124097524	AGA	-	DEL	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	in_frame_del	c.81_79	p.S27in_frame_del	0.014:1.000:1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				440	0	0	260	19	6.81004
