Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
HSD3B1	0	genome.wustl.edu	37	1	120056814	120056814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	120056814	120056814	C	T	SNP	HSD3B1	ENST00000235547	human	ensembl	74_37	+1	known	missense	c.674	p.P225L	1.000	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_PKS_KR,pfam_NmrA	-	no_errors	HSD3B1	HGNC	ENSG00000203857				42	0	0	284	22	7.18954
UBE2J2	0	genome.wustl.edu	37	1	1203290	1203290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	1203290	1203290	G	A	SNP	UBE2J2	ENST00000400930	human	ensembl	74_37	-1	known	missense	c.83	p.P28L	0.999	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2J2	HGNC	ENSG00000160087				201	0	0	650	61	8.57947
LCE1A	0	genome.wustl.edu	37	1	152800031	152800031	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	152800031	152800031	A	C	SNP	LCE1A	ENST00000335123	human	ensembl	74_37	+1	known	missense	c.83	p.K28T	0.171	NULL	NULL	-	no_errors	LCE1A	HGNC	ENSG00000186844				51	0	0	214	12	5.30973
PMVK	0	genome.wustl.edu	37	1	154904868	154904868	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	154904868	154904868	A	C	SNP	PMVK	ENST00000368467	human	ensembl	74_37	-1	known	missense	c.119	p.V40G	0.705	pfam_Pmev_kin_anim,superfamily_P-loop_NTPase,pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	pfam_Pmev_kin_anim,superfamily_P-loop_NTPase,pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	-	no_errors	PMVK	HGNC	ENSG00000163344				21	0	0	95	5	5
BCAN	0	genome.wustl.edu	37	1	156622677	156622677	+	Silent	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	156622677	156622677	C	A	SNP	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	silent	c.1935	p.P645	1.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				37	0	0	250	15	5.66038
OR10K2	0	genome.wustl.edu	37	1	158390187	158390187	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	158390187	158390187	T	G	SNP	OR10K2	ENST00000314902	human	ensembl	74_37	-1	known	missense	c.470	p.Q157P	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10K2	HGNC	ENSG00000180708				55	0	0	303	26	7.90274
OR10K2	0	genome.wustl.edu	37	1	158390391	158390391	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	158390391	158390391	T	G	SNP	OR10K2	ENST00000314902	human	ensembl	74_37	-1	known	missense	c.266	p.K89T	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10K2	HGNC	ENSG00000180708				85	0	0	419	46	9.89247
OR10K1	0	genome.wustl.edu	37	1	158435416	158435416	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	158435416	158435416	G	T	SNP	OR10K1	ENST00000289451	human	ensembl	74_37	+1	known	missense	c.65	p.R22M	0.005	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285				36	0	0	229	18	7.28745
OR10Z1	0	genome.wustl.edu	37	1	158576978	158576978	+	Silent	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	158576978	158576978	T	C	SNP	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	silent	c.750	p.I250	0.006	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				87	0	0	531	42	7.32984
SPTA1	0	genome.wustl.edu	37	1	158583547	158583547	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	158583547	158583547	T	C	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.6953	p.K2318R	0.999	pfscan_EF_hand_dom	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				25	0	0	132	10	7.04225
SPTA1	0	genome.wustl.edu	37	1	158606546	158606546	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	158606546	158606546	T	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.5195	p.K1732T	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				54	0	0	285	32	10.0946
SPTA1	0	genome.wustl.edu	37	1	158615013	158615013	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	158615013	158615013	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.4159	p.R1387C	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				55	0	0	352	39	9.97442
SPTA1	0	genome.wustl.edu	37	1	158651331	158651331	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	158651331	158651331	A	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.517	p.W173R	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				134	0	0	702	60	7.87402
PYHIN1	0	genome.wustl.edu	37	1	158908331	158908331	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	158908331	158908331	A	G	SNP	PYHIN1	ENST00000368140	human	ensembl	74_37	+1	known	missense	c.410	p.Q137R	0.009	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564				22	0	0	148	8	5.12821
OR10J1	0	genome.wustl.edu	37	1	159410501	159410501	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	159410501	159410501	A	C	SNP	OR10J1	ENST00000423932	human	ensembl	74_37	+1	known	missense	c.953	p.K318T	0.034	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10J1	HGNC	ENSG00000196184				31	0	0	209	12	5.42986
VANGL2	0	genome.wustl.edu	37	1	160394940	160394940	+	Silent	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	160394940	160394940	T	C	SNP	VANGL2	ENST00000368061	human	ensembl	74_37	+1	known	silent	c.1338	p.P446	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738				23	0	0	114	6	5
HMCN1	0	genome.wustl.edu	37	1	185992242	185992242	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	185992242	185992242	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.5706	p.N1902K	0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				30	0	0	185	13	6.56566
UBR4	0	genome.wustl.edu	37	1	19451145	19451145	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	19451145	19451145	G	C	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.9478	p.L3160V	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				35	0	0	236	18	7.08661
CFH	0	genome.wustl.edu	37	1	196684839	196684839	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	196684839	196684839	A	C	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	missense	c.1636	p.S546R	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971				54	0	0	340	30	8.10811
KLHL12	0	genome.wustl.edu	37	1	202861698	202861698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	202861698	202861698	C	T	SNP	KLHL12	ENST00000435533	human	ensembl	74_37	-1	known	missense	c.1784	p.R595H	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL12	HGNC	ENSG00000117153				36	0	0	173	18	9.42408
CD34	0	genome.wustl.edu	37	1	208061155	208061155	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	208061155	208061155	G	A	SNP	CD34	ENST00000310833	human	ensembl	74_37	-1	known	silent	c.1086	p.N362	1.000	pfam_CD34/Podocalyxin,prints_CD34	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059				40	0	0	114	44	27.8481
AIDA	0	genome.wustl.edu	37	1	222849460	222849460	+	Silent	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	222849460	222849460	G	C	SNP	AIDA	ENST00000541237	human	ensembl	74_37	-1	known	silent	c.489	p.P163	1.000	pfam_AIDA_N	pfam_AIDA_N,superfamily_AIDA_N	-	no_errors	AIDA	HGNC	ENSG00000186063				44	0	0	225	19	7.78689
SDE2	0	genome.wustl.edu	37	1	226180108	226180108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	226180108	226180108	C	T	SNP	SDE2	ENST00000272091	human	ensembl	74_37	-1	known	missense	c.511	p.V171I	0.999	NULL	superfamily_Mopterin_synth/thiamin_S_b	-	no_errors	SDE2	HGNC	ENSG00000143751				35	0	0	170	37	17.8744
ZBTB40	0	genome.wustl.edu	37	1	22837716	22837716	+	Silent	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	22837716	22837716	G	C	SNP	ZBTB40	ENST00000375647	human	ensembl	74_37	+1	known	silent	c.1878	p.L626	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677				72	0	0	305	26	7.85498
OBSCN	0	genome.wustl.edu	37	1	228434396	228434396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	228434396	228434396	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3925	p.A1309T	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				71	0	0	327	30	8.40336
EGLN1	0	genome.wustl.edu	37	1	231556836	231556836	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	231556836	231556836	C	T	SNP	EGLN1	ENST00000366641	human	ensembl	74_37	-1	known	missense	c.799	p.E267K	0.992	smart_Pro_4_hyd_alph	pfam_Znf_MYND,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_Znf_MYND	-	no_errors	EGLN1	HGNC	ENSG00000135766				44	0	0	186	53	22.1757
DISC1	0	genome.wustl.edu	37	1	231954086	231954086	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	231954086	231954086	T	C	SNP	DISC1	ENST00000439617	human	ensembl	74_37	+1	known	missense	c.1804	p.W602R	0.172	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946				36	0	0	228	15	6.17284
SIPA1L2	0	genome.wustl.edu	37	1	232561464	232561464	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	232561464	232561464	A	G	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.4501	p.F1501L	0.874	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				16	0	0	71	6	7.79221
FMN2	0	genome.wustl.edu	37	1	240555824	240555824	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	240555824	240555824	A	C	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.4872	p.Q1624H	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				23	0	0	209	13	5.85586
OR2L2	0	genome.wustl.edu	37	1	248201578	248201578	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	248201578	248201578	T	G	SNP	OR2L2	ENST00000366479	human	ensembl	74_37	+1	known	missense	c.9	p.N3K	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L2	HGNC	ENSG00000203663				40	0	0	322	18	5.29412
HCRTR1	0	genome.wustl.edu	37	1	32085185	32085185	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	32085185	32085185	C	A	SNP	HCRTR1	ENST00000373706	human	ensembl	74_37	+1	known	missense	c.252	p.F84L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_1,prints_NPY_rcpt	-	no_errors	HCRTR1	HGNC	ENSG00000121764				22	0	0	89	11	11
SZT2	0	genome.wustl.edu	37	1	43891237	43891237	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	43891237	43891237	A	C	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	missense	c.2738	p.Q913P	1.000	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				66	0	0	264	50	15.9236
NFIA	0	genome.wustl.edu	37	1	61824865	61824865	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	61824865	61824865	G	C	SNP	NFIA	ENST00000371189	human	ensembl	74_37	+1	known	missense	c.1000	p.G334R	1.000	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIA	HGNC	ENSG00000162599				56	0	0	319	17	5.05952
NEGR1	0	genome.wustl.edu	37	1	72163810	72163810	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	72163810	72163810	T	G	SNP	NEGR1	ENST00000357731	human	ensembl	74_37	-1	known	missense	c.548	p.E183A	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NEGR1	HGNC	ENSG00000172260				18	0	0	85	15	15
LPHN2	0	genome.wustl.edu	37	1	82436124	82436124	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	1	82436124	82436124	A	G	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.2848	p.K950E	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				26	0	0	233	15	6.04839
INA	0	genome.wustl.edu	37	10	105037931	105037931	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	10	105037931	105037931	G	A	SNP	INA	ENST00000369849	human	ensembl	74_37	+1	known	silent	c.963	p.A321	0.193	pfam_IF,superfamily_Prefoldin	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	INA	HGNC	ENSG00000148798				19	0	0	58	7	10.7692
SORCS1	0	genome.wustl.edu	37	10	108923912	108923912	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	10	108923912	108923912	T	C	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.373	p.S125G	0.005	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				40	0	0	120	10	7.69231
CCDC172	0	genome.wustl.edu	37	10	118137945	118137945	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	10	118137945	118137945	G	C	SNP	CCDC172	ENST00000333254	human	ensembl	74_37	+1	known	missense	c.664	p.E222Q	1.000	NULL	NULL	-	no_errors	CCDC172	HGNC	ENSG00000182645				11	0	0	159	22	12.1547
PRLHR	0	genome.wustl.edu	37	10	120353892	120353892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	10	120353892	120353892	C	T	SNP	PRLHR	ENST00000239032	human	ensembl	74_37	-1	known	missense	c.865	p.V289I	0.980	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prolrel_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PRLHR	HGNC	ENSG00000119973				42	0	0	135	8	5.59441
C10orf137	0	genome.wustl.edu	37	10	127438041	127438041	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	10	127438041	127438041	G	T	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	missense	c.3184	p.A1062S	1.000	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				25	0	0	151	22	12.7168
EBF3	0	genome.wustl.edu	37	10	131666103	131666103	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	10	131666103	131666103	G	A	SNP	EBF3	ENST00000355311	human	ensembl	74_37	-1	known	silent	c.855	p.G285	0.301	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF3	HGNC	ENSG00000108001				44	0	0	136	24	15
PTCHD3	0	genome.wustl.edu	37	10	27703150	27703150	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	10	27703150	27703150	C	T	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	silent	c.30	p.P10	0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				52	0	0	202	42	17.2131
ANKRD30A	0	genome.wustl.edu	37	10	37421204	37421204	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	10	37421204	37421204	A	G	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	missense	c.379	p.R127G	0.004	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513				25	0	0	234	16	6.4
DDX50	0	genome.wustl.edu	37	10	70666568	70666568	+	Silent	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	10	70666568	70666568	A	G	SNP	DDX50	ENST00000373585	human	ensembl	74_37	+1	known	silent	c.189	p.K63	0.952	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625				33	0	0	251	60	19.2926
ENSG00000271880	0	genome.wustl.edu	37	10	88768495	88768495	+	RNA	SNP	G	G	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	10	88768495	88768495	G	T	SNP	ENSG00000271880	ENST00000433214	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-96C23.5	Clone_based_vega_gene	ENSG00000271880				111	0	0	706	50	6.61376
CC2D2B	0	genome.wustl.edu	37	10	97791581	97791581	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	10	97791581	97791581	C	T	SNP	CC2D2B	ENST00000410012	human	ensembl	74_37	+1	known	missense	c.1022	p.T341M	0.657	NULL	NULL	-	no_errors	CC2D2B	HGNC	ENSG00000188649				57	0	0	513	44	7.89946
MRVI1	0	genome.wustl.edu	37	11	10648081	10648081	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	10648081	10648081	A	G	SNP	MRVI1	ENST00000421747	human	ensembl	74_37	-1	known	missense	c.773	p.V258A	1.000	NULL	pfam_MRVI1	-	no_errors	MRVI1	HGNC	ENSG00000072952				9	0	0	41	8	16.3265
DSCAML1	0	genome.wustl.edu	37	11	117332215	117332215	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	117332215	117332215	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	silent	c.3543	p.G1181	0.118	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				78	0	0	163	12	6.85714
C11orf63	0	genome.wustl.edu	37	11	122756770	122756770	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	122756770	122756770	C	T	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	silent	c.213	p.P71	0.001	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				75	0	0	222	36	13.9535
MUC5B	0	genome.wustl.edu	37	11	1270309	1270309	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	1270309	1270309	T	C	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.12208	p.S4070P	0.002	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				58	0	0	103	22	17.6
IGF2	0	genome.wustl.edu	37	11	2154256	2154256	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	2154256	2154256	G	A	SNP	IGF2	ENST00000434045	human	ensembl	74_37	-1	known	silent	c.672	p.H224	0.998	NULL	pfam_IGF2_C,pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_IGF2,prints_Insulin_family,prints_Insulin-like_growth_factor	-	no_errors	IGF2	HGNC	ENSG00000167244				73	0	0	267	19	6.64336
LRRC4C	0	genome.wustl.edu	37	11	40137506	40137506	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	40137506	40137506	T	C	SNP	LRRC4C	ENST00000527150	human	ensembl	74_37	-1	known	missense	c.337	p.R113G	0.910	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	LRRC4C	HGNC	ENSG00000148948				21	0	0	135	18	11.7647
CKAP5	0	genome.wustl.edu	37	11	46774965	46774965	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	46774965	46774965	A	C	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	missense	c.4952	p.L1651R	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				49	0	0	187	41	17.9825
LRP4	0	genome.wustl.edu	37	11	46890212	46890212	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	46890212	46890212	G	A	SNP	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	silent	c.4890	p.A1630	1.000	smart_EG-like_dom	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569				47	0	0	132	14	9.58904
OR52R1	0	genome.wustl.edu	37	11	4825639	4825639	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	4825639	4825639	A	G	SNP	OR52R1	ENST00000380382	human	ensembl	74_37	-1	known	missense	c.209	p.V70A	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937				43	0	0	158	10	5.95238
OR5D16	0	genome.wustl.edu	37	11	55606243	55606243	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	55606243	55606243	A	G	SNP	OR5D16	ENST00000378396	human	ensembl	74_37	+1	known	missense	c.16	p.R6G	0.142	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D16	HGNC	ENSG00000205029				35	0	0	204	19	8.52018
OR52N4	0	genome.wustl.edu	37	11	5776163	5776163	+	Silent	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	5776163	5776163	T	C	SNP	OR52N4	ENST00000317254	human	ensembl	74_37	+1	known	silent	c.193	p.L65	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52N4	HGNC	ENSG00000181074				29	0	0	136	22	13.9241
TCN1	0	genome.wustl.edu	37	11	59626717	59626717	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	59626717	59626717	C	T	SNP	TCN1	ENST00000257264	human	ensembl	74_37	-1	known	missense	c.580	p.A194T	1.000	pfam_Cbl-bd_transpt_euk	pfam_Cbl-bd_transpt_euk	-	no_errors	TCN1	HGNC	ENSG00000134827				37	0	0	291	23	7.32484
MS4A2	0	genome.wustl.edu	37	11	59857259	59857259	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	59857259	59857259	C	A	SNP	MS4A2	ENST00000278888	human	ensembl	74_37	+1	known	missense	c.151	p.L51M	0.144	NULL	pfam_CD20-like	-	no_errors	MS4A2	HGNC	ENSG00000149534				29	0	0	150	9	5.66038
B3GAT3	0	genome.wustl.edu	37	11	62383980	62383980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	62383980	62383980	G	A	SNP	B3GAT3	ENST00000265471	human	ensembl	74_37	-1	known	missense	c.907	p.R303W	0.999	pfam_Glyco_trans_43	pfam_Glyco_trans_43	-	no_errors	B3GAT3	HGNC	ENSG00000149541				29	0	0	155	12	7.18563
CLEC12A	0	genome.wustl.edu	37	12	10133243	10133243	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	10133243	10133243	A	C	SNP	CLEC12A	ENST00000355690	human	ensembl	74_37	+1	known	missense	c.472	p.S158R	0.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC12A	HGNC	ENSG00000172322				34	0	0	236	29	10.9434
UNG	0	genome.wustl.edu	37	12	109541289	109541289	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	109541289	109541289	C	G	SNP	UNG	ENST00000242576	human	ensembl	74_37	+1	known	missense	c.674	p.S225C	1.000	pfam_Uracil-DNA_glycosylase-like,superfamily_Uracil-DNA_glycosylase-like,tigrfam_Ura_DNA_glycsylse	pfam_Uracil-DNA_glycosylase-like,superfamily_Uracil-DNA_glycosylase-like,tigrfam_Ura_DNA_glycsylse	-	no_errors	UNG	HGNC	ENSG00000076248				12	0	0	98	8	7.54717
CCDC60	0	genome.wustl.edu	37	12	119943022	119943022	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	119943022	119943022	G	C	SNP	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	missense	c.797	p.S266T	0.092	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273				123	0	0	427	29	6.35965
CLIP1	0	genome.wustl.edu	37	12	122845597	122845597	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	122845597	122845597	G	C	SNP	CLIP1	ENST00000540338	human	ensembl	74_37	-1	known	missense	c.914	p.A305G	0.997	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779				26	0	0	127	10	7.29927
MMP17	0	genome.wustl.edu	37	12	132325159	132325159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	132325159	132325159	C	T	SNP	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	missense	c.464	p.T155M	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598				73	0	0	252	18	6.66667
PARP11	0	genome.wustl.edu	37	12	3923335	3923335	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	3923335	3923335	T	C	SNP	PARP11	ENST00000228820	human	ensembl	74_37	-1	known	missense	c.568	p.K190E	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP11	HGNC	ENSG00000111224				21	0	0	128	13	9.21986
LRRK2	0	genome.wustl.edu	37	12	40657648	40657648	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	40657648	40657648	A	C	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.1601	p.K534T	0.011	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				43	0	0	187	12	6.03015
SLC38A4	0	genome.wustl.edu	37	12	47186787	47186787	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	47186787	47186787	G	T	SNP	SLC38A4	ENST00000266579	human	ensembl	74_37	-1	known	missense	c.68	p.A23D	0.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209				67	0	0	420	29	6.4588
KRT84	0	genome.wustl.edu	37	12	52774882	52774882	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	52774882	52774882	A	C	SNP	KRT84	ENST00000257951	human	ensembl	74_37	-1	known	missense	c.1185	p.I395M	0.308	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT84	HGNC	ENSG00000161849				101	0	0	505	45	8.18182
TENC1	0	genome.wustl.edu	37	12	53457541	53457541	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	53457541	53457541	G	A	SNP	TENC1	ENST00000314276	human	ensembl	74_37	+1	known	missense	c.4135	p.V1379M	1.000	pfam_PTB,smart_PTB/PI_dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077				121	0	0	453	31	6.40496
STAT6	0	genome.wustl.edu	37	12	57501478	57501478	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	57501478	57501478	G	A	SNP	STAT6	ENST00000300134	human	ensembl	74_37	-1	known	silent	c.165	p.A55	0.001	pfam_STAT_TF_prot_interaction,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888				38	0	0	152	22	12.6437
LRP1	0	genome.wustl.edu	37	12	57554830	57554830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	57554830	57554830	C	T	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.2134	p.R712C	0.998	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				100	0	0	440	27	5.78158
ANO2	0	genome.wustl.edu	37	12	5908717	5908717	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	5908717	5908717	C	T	SNP	ANO2	ENST00000356134	human	ensembl	74_37	-1	known	silent	c.1002	p.A334	0.999	NULL	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617				17	0	0	79	7	8.13953
KLRG1	0	genome.wustl.edu	37	12	9162086	9162086	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	9162086	9162086	A	G	SNP	KLRG1	ENST00000266551	human	ensembl	74_37	+1	known	missense	c.523	p.S175G	0.974	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRG1	HGNC	ENSG00000139187				30	0	0	175	11	5.91398
A2M	0	genome.wustl.edu	37	12	9231846	9231846	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	9231846	9231846	T	G	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.3113	p.N1038T	1.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				22	0	0	124	8	6.06061
APAF1	0	genome.wustl.edu	37	12	99077029	99077029	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	12	99077029	99077029	G	A	SNP	APAF1	ENST00000551964	human	ensembl	74_37	+1	known	missense	c.2155	p.G719R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868				47	0	0	228	23	9.16335
SLC10A2	0	genome.wustl.edu	37	13	103703770	103703770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	13	103703770	103703770	C	T	SNP	SLC10A2	ENST00000245312	human	ensembl	74_37	-1	known	missense	c.598	p.A200T	0.000	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A2	HGNC	ENSG00000125255				28	0	0	84	16	16
SACS	0	genome.wustl.edu	37	13	23907855	23907855	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	13	23907855	23907855	A	C	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.10160	p.L3387R	0.999	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				29	0	0	164	17	9.39227
ENSG00000243008	0	genome.wustl.edu	37	13	25144712	25144712	+	RNA	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	13	25144712	25144712	A	C	SNP	ENSG00000243008	ENST00000453498	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-556N21.1	Clone_based_vega_gene	ENSG00000243008				9	0	0	54	9	14.2857
RNF17	0	genome.wustl.edu	37	13	25444738	25444738	+	Silent	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	13	25444738	25444738	T	G	SNP	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	silent	c.4308	p.T1436	0.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972				35	0	0	108	21	16.2791
DCLK1	0	genome.wustl.edu	37	13	36686166	36686166	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	13	36686166	36686166	A	G	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.563	p.V188A	1.000	smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				68	0	0	269	31	10.3333
CCDC169-SOHLH2	0	genome.wustl.edu	37	13	36748937	36748937	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	13	36748937	36748937	A	T	SNP	CCDC169-SOHLH2	ENST00000511166	human	ensembl	74_37	-1	known	missense	c.942	p.D314E	0.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	CCDC169-SOHLH2	HGNC	ENSG00000250709				30	0	0	133	7	5
CKAP2	0	genome.wustl.edu	37	13	53048035	53048035	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	13	53048035	53048035	G	C	SNP	CKAP2	ENST00000378037	human	ensembl	74_37	+1	known	missense	c.1621	p.D541H	0.000	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108				23	0	0	153	9	5.55556
PCDH9	0	genome.wustl.edu	37	13	67205373	67205373	+	Silent	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	13	67205373	67205373	A	C	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	silent	c.3309	p.T1103	0.609	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				48	0	0	175	27	13.3663
CLN5	0	genome.wustl.edu	37	13	77574734	77574734	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	13	77574734	77574734	T	G	SNP	CLN5	ENST00000377453	human	ensembl	74_37	+1	known	nonsense	c.854	p.L285*	1.000	NULL	NULL	-	no_errors	CLN5	HGNC	ENSG00000102805				30	0	0	172	18	9.47368
NOVA1	0	genome.wustl.edu	37	14	26917993	26917993	+	Silent	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	14	26917993	26917993	T	C	SNP	NOVA1	ENST00000539517	human	ensembl	74_37	-1	known	silent	c.696	p.K232	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA1	HGNC	ENSG00000139910				47	0	0	297	23	7.1875
MDGA2	0	genome.wustl.edu	37	14	47426697	47426697	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	14	47426697	47426697	A	G	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	missense	c.1969	p.F657L	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				33	0	0	180	29	13.8756
PYGL	0	genome.wustl.edu	37	14	51383825	51383825	+	Splice_Site	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	14	51383825	51383825	T	G	SNP	PYGL	ENST00000216392	human	ensembl	74_37	-1	known	splice_site	c.856-2	e8-2	1.000	-	-	-	no_errors	PYGL	HGNC	ENSG00000100504				24	0	0	189	28	12.9032
KCNH5	0	genome.wustl.edu	37	14	63483661	63483661	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	14	63483661	63483661	A	C	SNP	KCNH5	ENST00000322893	human	ensembl	74_37	-1	known	missense	c.85	p.L29V	1.000	superfamily_PAS	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015				28	0	0	160	23	12.5683
EML5	0	genome.wustl.edu	37	14	89168805	89168805	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	14	89168805	89168805	G	C	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	nonsense	c.2223	p.Y741*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				11	0	0	70	5	6.66667
DNM1P46	0	genome.wustl.edu	37	15	100340166	100340166	+	RNA	SNP	G	G	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	15	100340166	100340166	G	T	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.940	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				12	0	0	45	11	19.6429
DNM1P46	0	genome.wustl.edu	37	15	100340264	100340264	+	RNA	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	15	100340264	100340264	G	A	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.954	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				21	0	0	34	16	32
DNM1P46	0	genome.wustl.edu	37	15	100340266	100340266	+	RNA	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	15	100340266	100340266	G	A	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.916	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				21	0	0	35	16	31.3725
SNORD116-11	0	genome.wustl.edu	37	15	25321115	25321115	+	RNA	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	15	25321115	25321115	T	G	SNP	SNORD116-11	ENST00000383882	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	SNORD116-11	HGNC	ENSG00000206609				36	0	0	248	14	5.34351
TTBK2	0	genome.wustl.edu	37	15	43045040	43045040	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	15	43045040	43045040	T	C	SNP	TTBK2	ENST00000267890	human	ensembl	74_37	-1	known	missense	c.2404	p.I802V	0.939	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881				35	0	0	257	23	8.21429
SLC12A1	0	genome.wustl.edu	37	15	48522588	48522588	+	Splice_Site	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	15	48522588	48522588	A	C	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	splice_site	c.865-2	e6-2	1.000	-	-	-	no_errors	SLC12A1	HGNC	ENSG00000074803				15	0	0	42	5	10.6383
ONECUT1	0	genome.wustl.edu	37	15	53049845	53049845	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	15	53049845	53049845	G	A	SNP	ONECUT1	ENST00000305901	human	ensembl	74_37	-1	known	silent	c.1305	p.N435	0.980	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	ONECUT1	HGNC	ENSG00000169856				63	0	0	307	24	7.25076
HERC1	0	genome.wustl.edu	37	15	63950881	63950881	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	15	63950881	63950881	C	T	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.9461	p.R3154K	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				16	0	0	114	10	8.06452
THSD4	0	genome.wustl.edu	37	15	71952875	71952875	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	15	71952875	71952875	G	A	SNP	THSD4	ENST00000261862	human	ensembl	74_37	+1	known	missense	c.1159	p.G387S	1.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720				98	0	0	477	35	6.83594
SLC5A11	0	genome.wustl.edu	37	16	24902195	24902195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	16	24902195	24902195	G	A	SNP	SLC5A11	ENST00000347898	human	ensembl	74_37	+1	known	missense	c.670	p.A224T	0.321	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC	ENSG00000158865				107	0	0	343	47	12.0513
HS3ST4	0	genome.wustl.edu	37	16	26147507	26147507	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	16	26147507	26147507	T	G	SNP	HS3ST4	ENST00000331351	human	ensembl	74_37	+1	known	missense	c.1309	p.L437V	0.998	superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST4	HGNC	ENSG00000182601				15	0	0	56	4	6.66667
CLDN9	0	genome.wustl.edu	37	16	3063534	3063534	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	16	3063534	3063534	G	A	SNP	CLDN9	ENST00000445369	human	ensembl	74_37	+1	known	silent	c.171	p.Q57	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin9	-	no_errors	CLDN9	HGNC	ENSG00000213937				57	0	0	233	16	6.4257
CLDN6	0	genome.wustl.edu	37	16	3065603	3065603	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	16	3065603	3065603	C	T	SNP	CLDN6	ENST00000328796	human	ensembl	74_37	-1	known	silent	c.420	p.A140	0.926	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697				23	0	0	107	10	8.54701
TSNAXIP1	0	genome.wustl.edu	37	16	67861893	67861893	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	16	67861893	67861893	C	A	SNP	TSNAXIP1	ENST00000388833	human	ensembl	74_37	+1	known	missense	c.1974	p.S658R	0.876	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904				77	0	0	254	35	12.1107
TAT	0	genome.wustl.edu	37	16	71606201	71606201	+	Silent	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	16	71606201	71606201	C	A	SNP	TAT	ENST00000355962	human	ensembl	74_37	-1	known	silent	c.594	p.L198	1.000	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	-	no_errors	TAT	HGNC	ENSG00000198650				25	0	0	176	12	6.38298
HS3ST3B1	0	genome.wustl.edu	37	17	14205355	14205355	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	14205355	14205355	G	T	SNP	HS3ST3B1	ENST00000360954	human	ensembl	74_37	+1	known	missense	c.520	p.D174Y	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST3B1	HGNC	ENSG00000125430				11	0	0	22	3	12
LOC440416	0	genome.wustl.edu	37	17	20805638	20805638	+	RNA	SNP	A	A	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	20805638	20805638	A	T	SNP	LOC440416	ENST00000577537	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	RP11-344E13.3	Clone_based_vega_gene	ENSG00000233098				70	0	0	199	18	8.29493
TNFAIP1	0	genome.wustl.edu	37	17	26667474	26667474	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	26667474	26667474	G	A	SNP	TNFAIP1	ENST00000226225	human	ensembl	74_37	+1	known	silent	c.345	p.G115	0.978	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	TNFAIP1	HGNC	ENSG00000109079				58	0	0	217	13	5.65217
OR1E1	0	genome.wustl.edu	37	17	3301639	3301639	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	3301639	3301639	C	T	SNP	OR1E1	ENST00000322608	human	ensembl	74_37	-1	known	silent	c.66	p.E22	0.287	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1E1	HGNC	ENSG00000180016				34	0	0	173	16	8.46561
MED24	0	genome.wustl.edu	37	17	38191438	38191438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	38191438	38191438	C	T	SNP	MED24	ENST00000394128	human	ensembl	74_37	-1	known	missense	c.491	p.R164H	1.000	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838				101	0	0	329	25	7.06215
KRTAP9-3	0	genome.wustl.edu	37	17	39388901	39388901	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	39388901	39388901	A	C	SNP	KRTAP9-3	ENST00000411528	human	ensembl	74_37	+1	known	missense	c.148	p.T50P	0.057	NULL	NULL	-	no_errors	KRTAP9-3	HGNC	ENSG00000204873				57	0	0	252	14	5.26316
CDC27	0	genome.wustl.edu	37	17	45234287	45234287	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	45234287	45234287	T	G	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	missense	c.834	p.L278F	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897				11	0	0	110	6	5.17241
CDC27	0	genome.wustl.edu	37	17	45234367	45234367	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	45234367	45234367	A	T	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	missense	c.754	p.S252T	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897				26	0	0	146	10	6.41026
KIF2B	0	genome.wustl.edu	37	17	51901901	51901901	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	51901901	51901901	C	A	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.1507	p.L503I	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				21	0	0	126	10	7.35294
BCAS3	0	genome.wustl.edu	37	17	58885385	58885385	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	58885385	58885385	T	G	SNP	BCAS3	ENST00000390652	human	ensembl	74_37	+1	known	missense	c.424	p.F142V	1.000	NULL	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376				96	0	0	574	72	11.1455
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				39	0	0	110	40	26.6667
MYH10	0	genome.wustl.edu	37	17	8526315	8526315	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	8526315	8526315	A	C	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.250	p.F84V	1.000	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				60	0	0	399	79	16.5272
SETBP1	0	genome.wustl.edu	37	18	42531308	42531308	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	18	42531308	42531308	A	C	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.2003	p.K668T	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				35	0	0	151	17	10.119
SALL3	0	genome.wustl.edu	37	18	76752229	76752229	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	18	76752229	76752229	C	A	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.238	p.L80M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				14	0	0	25	6	19.3548
GRIN3B	0	genome.wustl.edu	37	19	1005304	1005304	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	1005304	1005304	G	A	SNP	GRIN3B	ENST00000234389	human	ensembl	74_37	+1	known	missense	c.1804	p.G602S	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN3B	HGNC	ENSG00000116032				40	0	0	179	26	12.6829
JUNB	0	genome.wustl.edu	37	19	12903585	12903585	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	12903585	12903585	A	T	SNP	JUNB	ENST00000302754	human	ensembl	74_37	+1	known	missense	c.1000	p.N334Y	1.000	prints_Leuzip_Jun	pfam_JNK,pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUNB	HGNC	ENSG00000171223				23	0	0	38	6	13.6364
FKBP8	0	genome.wustl.edu	37	19	18650400	18650400	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	18650400	18650400	C	T	SNP	FKBP8	ENST00000453489	human	ensembl	74_37	-1	known	silent	c.510	p.P170	0.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701				118	0	0	356	43	10.7769
ZNF257	0	genome.wustl.edu	37	19	22271961	22271961	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	22271961	22271961	A	T	SNP	ZNF257	ENST00000594947	human	ensembl	74_37	+1	known	missense	c.1409	p.Q470L	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134				17	0	0	126	8	5.97015
LOC440518	0	genome.wustl.edu	37	19	22785433	22785433	+	RNA	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	22785433	22785433	A	C	SNP	LOC440518	ENST00000600260	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTC-457E21.3	Clone_based_vega_gene	ENSG00000269332				38	0	0	144	24	14.2857
ZNF91	0	genome.wustl.edu	37	19	23544823	23544823	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	23544823	23544823	T	C	SNP	ZNF91	ENST00000300619	human	ensembl	74_37	-1	known	missense	c.958	p.K320E	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232				45	0	0	247	22	8.17844
APLP1	0	genome.wustl.edu	37	19	36365445	36365445	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	36365445	36365445	T	C	SNP	APLP1	ENST00000221891	human	ensembl	74_37	+1	known	missense	c.1096	p.S366P	1.000	superfamily_Amyloid_glyco_E2_domain	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290				69	0	0	230	35	13.2075
SPRED3	0	genome.wustl.edu	37	19	38881012	38881012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	38881012	38881012	G	A	SNP	SPRED3	ENST00000338502	human	ensembl	74_37	+1	known	missense	c.70	p.G24R	1.000	smart_WH1/EVH1,pfscan_WH1/EVH1	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED3	HGNC	ENSG00000188766				32	0	0	56	7	11.1111
FCGBP	0	genome.wustl.edu	37	19	40389741	40389741	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	40389741	40389741	A	G	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.8441	p.V2814A	0.000	smart_VWC_out,smart_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				8	0	0	16	13	44.8276
MADCAM1	0	genome.wustl.edu	37	19	501767	501767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	501767	501767	C	T	SNP	MADCAM1	ENST00000215637	human	ensembl	74_37	+1	known	missense	c.766	p.P256S	0.189	NULL	pfam_Adhes-Ig-like,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	MADCAM1	HGNC	ENSG00000099866				12	0	0	39	13	25
TBC1D17	0	genome.wustl.edu	37	19	50390983	50390983	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	50390983	50390983	G	A	SNP	TBC1D17	ENST00000221543	human	ensembl	74_37	+1	known	nonsense	c.1551	p.W517*	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D17	HGNC	ENSG00000104946				24	0	0	59	6	9.23077
LENG9	0	genome.wustl.edu	37	19	54973371	54973371	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	54973371	54973371	T	A	SNP	LENG9	ENST00000333834	human	ensembl	74_37	-1	known	missense	c.1405	p.S469C	0.000	superfamily_RNA_ligase/cNuc_Pdiesterase	superfamily_RNA_ligase/cNuc_Pdiesterase,smart_Znf_CCCH	-	no_errors	LENG9	HGNC	ENSG00000182909				65	0	0	157	85	35.124
ZNF471	0	genome.wustl.edu	37	19	57036546	57036546	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	57036546	57036546	T	C	SNP	ZNF471	ENST00000591537	human	ensembl	74_37	+1	putative	missense	c.689	p.L230P	0.992	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF471	HGNC	ENSG00000196263				36	0	0	311	22	6.60661
USP29	0	genome.wustl.edu	37	19	57641380	57641380	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	57641380	57641380	T	C	SNP	USP29	ENST00000254181	human	ensembl	74_37	+1	known	missense	c.1337	p.L446P	0.012	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP29	HGNC	ENSG00000131864				51	0	0	332	59	15.0895
ZNF135	0	genome.wustl.edu	37	19	58578734	58578734	+	Silent	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	58578734	58578734	T	C	SNP	ZNF135	ENST00000401053	human	ensembl	74_37	+1	known	silent	c.954	p.G318	0.010	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF135	HGNC	ENSG00000176293				57	0	0	188	11	5.52764
MUC16	0	genome.wustl.edu	37	19	9067492	9067492	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	19	9067492	9067492	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.19954	p.T6652P	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				55	0	0	269	19	6.59722
CNTNAP5	0	genome.wustl.edu	37	2	125262020	125262020	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	125262020	125262020	T	C	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.1211	p.L404P	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				41	0	0	150	22	12.7907
AMER3	0	genome.wustl.edu	37	2	131520539	131520539	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	131520539	131520539	C	T	SNP	AMER3	ENST00000321420	human	ensembl	74_37	+1	known	silent	c.894	p.P298	0.624	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER3	HGNC	ENSG00000178171				32	0	0	121	7	5.46875
NCKAP5	0	genome.wustl.edu	37	2	133971302	133971302	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	133971302	133971302	T	G	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.193	p.S65R	0.992	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				11	0	0	58	7	10.7692
LRP1B	0	genome.wustl.edu	37	2	141665505	141665505	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	141665505	141665505	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.3461	p.E1154G	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				74	0	0	325	22	6.34006
LRP1B	0	genome.wustl.edu	37	2	141747223	141747223	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	141747223	141747223	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.2648	p.N883T	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				32	0	0	200	16	7.40741
GALNT13	0	genome.wustl.edu	37	2	155102400	155102400	+	Silent	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	155102400	155102400	T	C	SNP	GALNT13	ENST00000409237	human	ensembl	74_37	+1	known	silent	c.762	p.T254	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278				22	0	0	195	15	7.14286
FAM49A	0	genome.wustl.edu	37	2	16736390	16736390	+	Silent	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	16736390	16736390	T	C	SNP	FAM49A	ENST00000355549	human	ensembl	74_37	-1	known	silent	c.855	p.K285	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49A	HGNC	ENSG00000197872				16	0	0	71	10	12.3457
XIRP2	0	genome.wustl.edu	37	2	167760333	167760333	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	167760333	167760333	T	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.341	p.L114R	0.956	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				38	0	0	206	14	6.36364
MYO3B	0	genome.wustl.edu	37	2	171258164	171258164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	171258164	171258164	C	T	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	missense	c.2119	p.R707C	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				22	0	0	77	14	15.3846
PRKRA	0	genome.wustl.edu	37	2	179300871	179300871	+	Splice_Site	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	179300871	179300871	C	T	SNP	PRKRA	ENST00000325748	human	ensembl	74_37	-1	known	splice_site	c.784+1	e7+1	1.000	-	-	-	no_errors	PRKRA	HGNC	ENSG00000180228				25	0	0	195	17	8.01887
TTN	0	genome.wustl.edu	37	2	179470170	179470170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	179470170	179470170	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.46148	p.P15383L	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				16	0	0	142	34	19.3182
TTN	0	genome.wustl.edu	37	2	179614992	179614992	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	179614992	179614992	T	G	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	missense	c.12135	p.K4045N	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				33	0	0	276	15	5.15464
PLCL1	0	genome.wustl.edu	37	2	198950584	198950584	+	Silent	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	198950584	198950584	T	G	SNP	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	silent	c.2343	p.T781	0.803	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				53	0	0	336	31	8.44687
PLCL1	0	genome.wustl.edu	37	2	198950764	198950764	+	Silent	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	198950764	198950764	T	G	SNP	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	silent	c.2523	p.L841	0.057	superfamily_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				18	0	0	171	26	13.198
SPATS2L	0	genome.wustl.edu	37	2	201305422	201305422	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	201305422	201305422	C	G	SNP	SPATS2L	ENST00000409755	human	ensembl	74_37	+1	known	missense	c.793	p.L265V	1.000	pfam_DUF1387	pfam_DUF1387,superfamily_UBA-like	-	no_errors	SPATS2L	HGNC	ENSG00000196141				22	0	0	150	23	13.2948
RAPH1	0	genome.wustl.edu	37	2	204354397	204354397	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	204354397	204354397	G	A	SNP	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	silent	c.642	p.S214	0.944	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				60	0	0	304	54	15.0838
ZDBF2	0	genome.wustl.edu	37	2	207170797	207170797	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	207170797	207170797	A	C	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.1545	p.E515D	0.001	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				31	0	0	154	15	8.87574
MAP2	0	genome.wustl.edu	37	2	210557419	210557419	+	Silent	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	210557419	210557419	A	C	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.525	p.S175	0.968	NULL	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				29	0	0	162	17	9.49721
APOB	0	genome.wustl.edu	37	2	21234209	21234209	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	21234209	21234209	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.5531	p.S1844F	0.995	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				44	0	0	310	56	15.3005
ABCA12	0	genome.wustl.edu	37	2	215812241	215812241	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	215812241	215812241	A	C	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.7144	p.F2382V	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				29	0	0	176	18	9.27835
CCDC108	0	genome.wustl.edu	37	2	219892286	219892286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	219892286	219892286	C	T	SNP	CCDC108	ENST00000409865	human	ensembl	74_37	-1	putative	missense	c.2264	p.G755D	0.024	NULL	superfamily_PapD-like	-	no_errors	CCDC108	HGNC	ENSG00000181378				15	0	0	115	9	7.25806
CHRND	0	genome.wustl.edu	37	2	233394675	233394675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	233394675	233394675	C	T	SNP	CHRND	ENST00000258385	human	ensembl	74_37	+1	known	missense	c.646	p.R216W	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRND	HGNC	ENSG00000135902				51	0	0	160	28	14.8936
EHBP1	0	genome.wustl.edu	37	2	63058193	63058193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	63058193	63058193	G	A	SNP	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	missense	c.534	p.M178I	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504				23	0	0	160	16	9.09091
CNRIP1	0	genome.wustl.edu	37	2	68544371	68544371	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	68544371	68544371	A	C	SNP	CNRIP1	ENST00000263655	human	ensembl	74_37	-1	known	missense	c.248	p.V83G	1.000	NULL	NULL	-	no_errors	CNRIP1	HGNC	ENSG00000119865				42	0	0	199	19	8.7156
DYSF	0	genome.wustl.edu	37	2	71741005	71741005	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	71741005	71741005	C	A	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.710	p.A237E	0.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				46	0	0	129	15	10.4167
CTNNA2	0	genome.wustl.edu	37	2	80540716	80540716	+	Silent	SNP	A	A	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	80540716	80540716	A	T	SNP	CTNNA2	ENST00000343114	human	ensembl	74_37	+1	putative	silent	c.30	p.S10	0.001	NULL	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				8	0	0	43	6	12.2449
C20orf26	0	genome.wustl.edu	37	20	20051611	20051611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	20	20051611	20051611	C	T	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	missense	c.257	p.S86L	0.004	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				36	0	0	188	16	7.84314
SSTR4	0	genome.wustl.edu	37	20	23016284	23016284	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	20	23016284	23016284	C	T	SNP	SSTR4	ENST00000255008	human	ensembl	74_37	+1	known	missense	c.164	p.A55V	0.217	prints_Somatstn_rcpt_4,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_4,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671				63	0	0	250	15	5.66038
CD93	0	genome.wustl.edu	37	20	23065702	23065702	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	20	23065702	23065702	G	A	SNP	CD93	ENST00000246006	human	ensembl	74_37	-1	known	silent	c.1128	p.G376	0.000	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				26	0	0	120	7	5.51181
ACSS1	0	genome.wustl.edu	37	20	24993551	24993551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	20	24993551	24993551	G	A	SNP	ACSS1	ENST00000323482	human	ensembl	74_37	-1	known	missense	c.1604	p.A535V	0.997	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930				83	0	0	303	17	5.3125
AAR2	0	genome.wustl.edu	37	20	34832708	34832708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	20	34832708	34832708	C	T	SNP	AAR2	ENST00000320849	human	ensembl	74_37	+1	known	missense	c.847	p.R283W	1.000	pfam_AAR2	pfam_AAR2	-	no_errors	AAR2	HGNC	ENSG00000131043				34	0	0	247	26	9.52381
ZFP64	0	genome.wustl.edu	37	20	50701472	50701472	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	20	50701472	50701472	C	A	SNP	ZFP64	ENST00000361387	human	ensembl	74_37	-1	known	missense	c.1562	p.R521L	0.999	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				41	0	0	204	21	9.33333
RAE1	0	genome.wustl.edu	37	20	55931555	55931555	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	20	55931555	55931555	G	C	SNP	RAE1	ENST00000371242	human	ensembl	74_37	+1	known	missense	c.249	p.Q83H	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RAE1	HGNC	ENSG00000101146				14	0	0	55	6	9.83607
TAF4	0	genome.wustl.edu	37	20	60584158	60584158	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	20	60584158	60584158	G	A	SNP	TAF4	ENST00000252996	human	ensembl	74_37	-1	known	nonsense	c.1834	p.Q612*	1.000	pfam_TAFH_NHR1,smart_TAFH_NHR1,pfscan_TAFH_NHR1	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4	HGNC	ENSG00000130699				42	0	0	221	69	23.7931
PLCB1	0	genome.wustl.edu	37	20	8626804	8626804	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	20	8626804	8626804	C	T	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	missense	c.440	p.S147F	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				21	0	0	144	23	13.7725
TMPRSS15	0	genome.wustl.edu	37	21	19704431	19704431	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	21	19704431	19704431	A	G	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	missense	c.1624	p.F542L	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				36	0	0	156	9	5.45455
ADAMTS5	0	genome.wustl.edu	37	21	28306875	28306875	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	21	28306875	28306875	C	A	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	missense	c.1599	p.K533N	1.000	smart_ADAM_Cys-rich	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				16	0	0	133	11	7.63889
ITGB2	0	genome.wustl.edu	37	21	46330674	46330674	+	Silent	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	21	46330674	46330674	C	A	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	silent	c.24	p.L8	0.007	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255				30	0	0	36	5	12.1951
SLC5A4	0	genome.wustl.edu	37	22	32625330	32625330	+	Silent	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	22	32625330	32625330	T	C	SNP	SLC5A4	ENST00000266086	human	ensembl	74_37	-1	known	silent	c.1131	p.G377	0.972	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A4	HGNC	ENSG00000100191				29	0	0	120	15	11.1111
CBX6	0	genome.wustl.edu	37	22	39263079	39263079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	22	39263079	39263079	C	T	SNP	CBX6	ENST00000407418	human	ensembl	74_37	-1	known	missense	c.374	p.R125H	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX6	HGNC	ENSG00000183741				11	0	0	28	3	9.67742
CELSR1	0	genome.wustl.edu	37	22	46805053	46805053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	22	46805053	46805053	G	A	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.5066	p.P1689L	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				32	0	0	114	12	9.52381
IGSF11	0	genome.wustl.edu	37	3	118645003	118645003	+	Silent	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	118645003	118645003	A	G	SNP	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	silent	c.525	p.T175	0.995	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847				25	0	0	210	17	7.48899
POLQ	0	genome.wustl.edu	37	3	121151768	121151768	+	Silent	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	121151768	121151768	A	G	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	silent	c.7656	p.V2552	0.951	pfam_DNA-dir_DNA_pol_A_palm_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				8	0	0	86	5	5.49451
PLXNA1	0	genome.wustl.edu	37	3	126751404	126751404	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	126751404	126751404	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.5406	p.Y1802	0.879	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				52	0	0	158	10	5.95238
PAQR9	0	genome.wustl.edu	37	3	142681901	142681901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	142681901	142681901	G	A	SNP	PAQR9	ENST00000340634	human	ensembl	74_37	-1	known	missense	c.278	p.P93L	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR9	HGNC	ENSG00000188582				25	0	0	64	11	14.6667
FGF12	0	genome.wustl.edu	37	3	191861866	191861866	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	191861866	191861866	G	A	SNP	FGF12	ENST00000454309	human	ensembl	74_37	-1	known	missense	c.664	p.R222C	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF12	HGNC	ENSG00000114279				71	0	0	470	48	9.26641
KCNH8	0	genome.wustl.edu	37	3	19554711	19554711	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	19554711	19554711	A	C	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.2329	p.T777P	0.920	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				37	0	0	206	11	5.06912
KIAA0226	0	genome.wustl.edu	37	3	197402382	197402382	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	197402382	197402382	C	A	SNP	KIAA0226	ENST00000296343	human	ensembl	74_37	-1	known	missense	c.2651	p.C884F	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016				79	0	0	317	19	5.65476
DCLK3	0	genome.wustl.edu	37	3	36778861	36778861	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	36778861	36778861	G	A	SNP	DCLK3	ENST00000416516	human	ensembl	74_37	-1	known	silent	c.1290	p.I430	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK3	HGNC	ENSG00000163673				46	0	0	184	10	5.15464
MYRIP	0	genome.wustl.edu	37	3	40085715	40085715	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	40085715	40085715	C	G	SNP	MYRIP	ENST00000302541	human	ensembl	74_37	+1	known	nonsense	c.285	p.Y95*	1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	pfam_Myrip/Melanophilin,superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	MYRIP	HGNC	ENSG00000170011				46	0	0	146	13	8.1761
ZNF852	0	genome.wustl.edu	37	3	44541168	44541168	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	44541168	44541168	G	A	SNP	ZNF852	ENST00000436261	human	ensembl	74_37	-1	known	silent	c.1101	p.I367	0.052	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF852	HGNC	ENSG00000178917				20	0	0	115	10	8
PDHB	0	genome.wustl.edu	37	3	58414150	58414150	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	58414150	58414150	G	A	SNP	PDHB	ENST00000474765	human	ensembl	74_37	-1	putative	silent	c.930	p.I310	0.000	NULL	pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	PDHB	HGNC	ENSG00000168291				26	0	0	97	11	10.1852
GRM7	0	genome.wustl.edu	37	3	7620685	7620685	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	7620685	7620685	A	G	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.2092	p.S698G	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				11	0	0	112	11	8.94309
ROBO1	0	genome.wustl.edu	37	3	78700930	78700930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	78700930	78700930	G	A	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.2764	p.R922C	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				25	0	0	158	17	9.71429
HTR1F	0	genome.wustl.edu	37	3	88039930	88039930	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	88039930	88039930	T	G	SNP	HTR1F	ENST00000319595	human	ensembl	74_37	+1	known	missense	c.31	p.L11V	1.000	prints_5HT1F_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_5HT1F_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HTR1F	HGNC	ENSG00000179097				61	0	0	287	68	19.1549
HTR1F	0	genome.wustl.edu	37	3	88040909	88040909	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	88040909	88040909	A	C	SNP	HTR1F	ENST00000319595	human	ensembl	74_37	+1	known	missense	c.1010	p.Y337S	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_5HT1F_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HTR1F	HGNC	ENSG00000179097				14	0	0	149	14	8.58896
CRELD1	0	genome.wustl.edu	37	3	9985701	9985701	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	9985701	9985701	C	G	SNP	CRELD1	ENST00000326434	human	ensembl	74_37	+1	known	missense	c.1164	p.F388L	0.016	NULL	pfam_DUF3456,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_Furin_repeat,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	CRELD1	HGNC	ENSG00000163703				51	0	0	215	16	6.92641
NDNF	0	genome.wustl.edu	37	4	121958019	121958019	+	Silent	SNP	A	A	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	121958019	121958019	A	T	SNP	NDNF	ENST00000379692	human	ensembl	74_37	-1	known	silent	c.1107	p.S369	0.937	pfam_DUF2369	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	NDNF	HGNC	ENSG00000173376				44	0	0	284	20	6.57895
FAT4	0	genome.wustl.edu	37	4	126372719	126372719	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	126372719	126372719	A	C	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.10548	p.E3516D	0.996	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				57	0	0	372	30	7.46269
FAT4	0	genome.wustl.edu	37	4	126411303	126411303	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	126411303	126411303	G	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.13326	p.E4442D	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				52	0	0	196	42	17.6471
OTUD4	0	genome.wustl.edu	37	4	146067479	146067479	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	146067479	146067479	T	G	SNP	OTUD4	ENST00000447906	human	ensembl	74_37	-1	known	missense	c.1362	p.E454D	0.999	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164				27	0	0	199	16	7.44186
NPY2R	0	genome.wustl.edu	37	4	156135632	156135632	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	156135632	156135632	A	C	SNP	NPY2R	ENST00000329476	human	ensembl	74_37	+1	known	missense	c.541	p.S181R	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY2_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY2_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	NPY2R	HGNC	ENSG00000185149				33	0	0	182	19	9.45274
CD38	0	genome.wustl.edu	37	4	15839770	15839770	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	15839770	15839770	A	T	SNP	CD38	ENST00000226279	human	ensembl	74_37	+1	known	missense	c.641	p.K214I	0.002	pfam_ADP-ribosyl_cyclase	pfam_ADP-ribosyl_cyclase	-	no_errors	CD38	HGNC	ENSG00000004468				13	0	0	68	6	8.10811
TMEM192	0	genome.wustl.edu	37	4	166000876	166000876	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	166000876	166000876	C	T	SNP	TMEM192	ENST00000306480	human	ensembl	74_37	-1	known	silent	c.750	p.A250	0.008	NULL	NULL	-	no_errors	TMEM192	HGNC	ENSG00000170088				17	0	0	87	9	9.375
TLL1	0	genome.wustl.edu	37	4	166935691	166935691	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	166935691	166935691	A	G	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.1021	p.R341G	1.000	pfam_Peptidase_M12A,pirsf_BMP_1/tolloid-like,prints_Peptidase_M12A	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				75	0	0	376	33	8.06846
KIAA1211	0	genome.wustl.edu	37	4	57182545	57182545	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	57182545	57182545	A	T	SNP	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	missense	c.2877	p.Q959H	0.512	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265				19	0	0	65	8	10.9589
TMPRSS11F	0	genome.wustl.edu	37	4	68956353	68956353	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	68956353	68956353	T	G	SNP	TMPRSS11F	ENST00000356291	human	ensembl	74_37	-1	known	missense	c.170	p.K57T	0.404	pirsf_Pept_S1A_HAT/DESC1,pfam_SEA_dom,pfscan_SEA_dom	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SEA_dom,pfscan_Peptidase_S1	-	no_errors	TMPRSS11F	HGNC	ENSG00000198092				14	0	0	143	12	7.74194
ACSL6	0	genome.wustl.edu	37	5	131324527	131324527	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	5	131324527	131324527	G	A	SNP	ACSL6	ENST00000296869	human	ensembl	74_37	-1	known	missense	c.623	p.P208L	0.997	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398				92	0	0	289	35	10.8025
DNAH5	0	genome.wustl.edu	37	5	13736033	13736033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	5	13736033	13736033	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.11464	p.R3822W	0.948	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				35	0	0	212	14	6.19469
PCDHGA2	0	genome.wustl.edu	37	5	140720706	140720706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	5	140720706	140720706	G	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	missense	c.2168	p.R723H	0.027	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				94	0	0	360	29	7.45501
FAT2	0	genome.wustl.edu	37	5	150908750	150908750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	5	150908750	150908750	C	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.10015	p.V3339I	0.018	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				24	0	0	141	9	6
DOCK2	0	genome.wustl.edu	37	5	169483732	169483732	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	5	169483732	169483732	C	G	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.4340	p.P1447R	1.000	pfam_DOCK_C	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				22	0	0	92	9	8.91089
STC2	0	genome.wustl.edu	37	5	172750412	172750412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	5	172750412	172750412	C	T	SNP	STC2	ENST00000265087	human	ensembl	74_37	-1	known	missense	c.316	p.A106T	0.994	pfam_Stanniocalcin	pfam_Stanniocalcin	-	no_errors	STC2	HGNC	ENSG00000113739				9	0	0	43	5	10.4167
FAF2	0	genome.wustl.edu	37	5	175916030	175916030	+	Splice_Site	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	5	175916030	175916030	T	G	SNP	FAF2	ENST00000261942	human	ensembl	74_37	+1	known	splice_site	c.344+2	e4+2	1.000	-	-	-	no_errors	FAF2	HGNC	ENSG00000113194				10	0	0	85	17	16.6667
RXFP3	0	genome.wustl.edu	37	5	33937122	33937122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	5	33937122	33937122	G	A	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	missense	c.277	p.A93T	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				31	0	0	123	27	18
CMYA5	0	genome.wustl.edu	37	5	79034410	79034410	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	5	79034410	79034410	A	C	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.9822	p.Q3274H	0.938	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				43	0	0	165	19	10.3261
SEMA5A	0	genome.wustl.edu	37	5	9108375	9108375	+	Silent	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	5	9108375	9108375	A	G	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	silent	c.1950	p.C650	0.999	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				27	0	0	88	23	20.7207
LAMA2	0	genome.wustl.edu	37	6	129511389	129511389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	6	129511389	129511389	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.1507	p.G503S	0.999	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				16	0	0	138	8	5.47945
GFOD1	0	genome.wustl.edu	37	6	13365511	13365511	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	6	13365511	13365511	G	A	SNP	GFOD1	ENST00000379287	human	ensembl	74_37	-1	known	nonsense	c.637	p.R213*	1.000	NULL	pfam_Oxidoreductase_N,pfam_OxRdtase_C	-	no_errors	GFOD1	HGNC	ENSG00000145990				56	0	0	172	12	6.52174
SYNE1	0	genome.wustl.edu	37	6	152671448	152671448	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	6	152671448	152671448	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.11756	p.A3919V	0.104	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				37	0	0	172	40	18.8679
SYNE1	0	genome.wustl.edu	37	6	152718078	152718078	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	6	152718078	152718078	A	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.7388	p.L2463H	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				35	0	0	236	15	5.9761
PLG	0	genome.wustl.edu	37	6	161158022	161158022	+	Silent	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	6	161158022	161158022	A	G	SNP	PLG	ENST00000308192	human	ensembl	74_37	+1	known	silent	c.1785	p.Q595	0.837	pirsf_Pept_S1A_plasmin,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	PLG	HGNC	ENSG00000122194				25	0	0	152	10	6.17284
QKI	0	genome.wustl.edu	37	6	163984719	163984719	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	6	163984719	163984719	T	G	SNP	QKI	ENST00000361752	human	ensembl	74_37	+1	known	missense	c.902	p.L301R	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				38	0	0	219	13	5.60345
ZNF311	0	genome.wustl.edu	37	6	28963505	28963505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	6	28963505	28963505	C	T	SNP	ZNF311	ENST00000377179	human	ensembl	74_37	-1	known	missense	c.1274	p.S425N	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF311	HGNC	ENSG00000197935				28	0	0	160	33	17.0984
HLA-A	0	genome.wustl.edu	37	6	29910607	29910607	+	Silent	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	6	29910607	29910607	G	C	SNP	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	silent	c.147	p.V49	0.021	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				24	0	0	84	5	5.61798
PTCHD4	0	genome.wustl.edu	37	6	47847330	47847330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	6	47847330	47847330	C	T	SNP	PTCHD4	ENST00000339488	human	ensembl	74_37	-1	known	missense	c.1250	p.R417H	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD4	HGNC	ENSG00000244694				25	0	0	126	21	14.2857
DST	0	genome.wustl.edu	37	6	56474064	56474064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	6	56474064	56474064	G	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.5263	p.L1755F	1.000	superfamily_ABC1_TM_dom,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				94	0	0	464	64	12.1212
RELN	0	genome.wustl.edu	37	7	103207203	103207203	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	103207203	103207203	A	C	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.4592	p.L1531R	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				28	0	0	188	20	9.61538
RELN	0	genome.wustl.edu	37	7	103275919	103275919	+	Silent	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	103275919	103275919	A	G	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	silent	c.2418	p.T806	0.982	pfam_BNR_rpt,superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				29	0	0	218	31	12.4498
GPR85	0	genome.wustl.edu	37	7	112724143	112724143	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	112724143	112724143	G	A	SNP	GPR85	ENST00000297146	human	ensembl	74_37	-1	known	nonsense	c.634	p.R212*	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR85	HGNC	ENSG00000164604				34	0	0	175	23	11.6162
PTPRZ1	0	genome.wustl.edu	37	7	121652018	121652018	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	121652018	121652018	A	C	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.2918	p.K973T	0.894	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				52	0	0	296	18	5.73248
AASS	0	genome.wustl.edu	37	7	121717962	121717962	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	121717962	121717962	G	A	SNP	AASS	ENST00000393376	human	ensembl	74_37	-1	known	silent	c.2592	p.I864	0.907	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311				149	0	0	723	80	9.96264
TAS2R16	0	genome.wustl.edu	37	7	122635196	122635196	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	122635196	122635196	T	C	SNP	TAS2R16	ENST00000249284	human	ensembl	74_37	-1	known	missense	c.493	p.T165A	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519				28	0	0	254	15	5.57621
CHRM2	0	genome.wustl.edu	37	7	136700570	136700570	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	136700570	136700570	T	A	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	missense	c.958	p.S320T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072				65	0	0	216	30	12.1951
CNTNAP2	0	genome.wustl.edu	37	7	146741127	146741127	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	146741127	146741127	A	C	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.531	p.E177D	0.884	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				59	0	0	287	40	12.2324
CNTNAP2	0	genome.wustl.edu	37	7	146997356	146997356	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	146997356	146997356	A	C	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.1472	p.K491T	0.918	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				32	0	0	191	32	14.3498
CHPF2	0	genome.wustl.edu	37	7	150932222	150932222	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	150932222	150932222	G	A	SNP	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	missense	c.352	p.V118M	1.000	NULL	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100				57	0	0	225	17	7.02479
UBE3C	0	genome.wustl.edu	37	7	157060400	157060400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	157060400	157060400	G	A	SNP	UBE3C	ENST00000348165	human	ensembl	74_37	+1	known	missense	c.3203	p.S1068N	0.999	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335				55	0	0	232	18	7.2
DNAH11	0	genome.wustl.edu	37	7	21760426	21760426	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	21760426	21760426	T	G	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.7239	p.F2413L	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				16	0	0	41	9	18
CARD11	0	genome.wustl.edu	37	7	2946340	2946340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	2946340	2946340	G	A	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	missense	c.3397	p.R1133C	0.978	superfamily_P-loop_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				52	0	0	203	16	7.30594
SFRP4	0	genome.wustl.edu	37	7	37955820	37955820	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	37955820	37955820	T	C	SNP	SFRP4	ENST00000436072	human	ensembl	74_37	-1	known	missense	c.320	p.D107G	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP4	HGNC	ENSG00000106483				37	0	0	101	7	6.48148
GLI3	0	genome.wustl.edu	37	7	42116369	42116369	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	42116369	42116369	G	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.455	p.P152L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				26	0	0	150	16	9.63855
ADCY1	0	genome.wustl.edu	37	7	45753498	45753498	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	45753498	45753498	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	silent	c.3264	p.P1088	0.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				50	0	0	194	12	5.82524
IKZF1	0	genome.wustl.edu	37	7	50459470	50459470	+	Silent	SNP	G	G	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	50459470	50459470	G	T	SNP	IKZF1	ENST00000331340	human	ensembl	74_37	+1	known	silent	c.759	p.L253	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF1	HGNC	ENSG00000185811				19	0	0	127	17	11.8056
WBSCR17	0	genome.wustl.edu	37	7	70800597	70800597	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	70800597	70800597	G	A	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	silent	c.300	p.P100	0.658	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				27	0	0	137	33	19.4118
WBSCR17	0	genome.wustl.edu	37	7	71175770	71175770	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	71175770	71175770	T	G	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.1525	p.F509V	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				55	0	0	187	15	7.42574
HGF	0	genome.wustl.edu	37	7	81355304	81355304	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	81355304	81355304	G	T	SNP	HGF	ENST00000222390	human	ensembl	74_37	-1	known	missense	c.1070	p.P357Q	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991				37	0	0	263	22	7.7193
PCLO	0	genome.wustl.edu	37	7	82585193	82585193	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	82585193	82585193	A	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	nonsense	c.5076	p.Y1692*	0.995	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				22	0	0	131	24	15.4839
GRM3	0	genome.wustl.edu	37	7	86468784	86468784	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	86468784	86468784	T	G	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	missense	c.1954	p.F652V	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				85	0	0	378	28	6.89655
ABCB1	0	genome.wustl.edu	37	7	87196226	87196226	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	87196226	87196226	A	C	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	missense	c.405	p.F135L	0.997	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				24	0	0	165	10	5.71429
TFPI2	0	genome.wustl.edu	37	7	93519622	93519622	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	93519622	93519622	G	A	SNP	TFPI2	ENST00000222543	human	ensembl	74_37	-1	known	missense	c.98	p.A33V	0.001	pirsf_Prot_inhib_I2_TFPI,superfamily_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825				41	0	0	131	13	9.02778
ZKSCAN1	0	genome.wustl.edu	37	7	99631029	99631029	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	7	99631029	99631029	T	G	SNP	ZKSCAN1	ENST00000324306	human	ensembl	74_37	+1	known	missense	c.901	p.F301V	0.096	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261				26	0	0	118	8	6.34921
PABPC1	0	genome.wustl.edu	37	8	101719121	101719121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	101719121	101719121	G	A	SNP	PABPC1	ENST00000318607	human	ensembl	74_37	-1	known	missense	c.1441	p.R481C	1.000	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1	HGNC	ENSG00000070756				29	0	0	178	20	10.101
UBR5	0	genome.wustl.edu	37	8	103327016	103327016	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	103327016	103327016	C	T	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	missense	c.1850	p.C617Y	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				24	0	0	120	10	7.69231
ANGPT1	0	genome.wustl.edu	37	8	108334268	108334268	+	Silent	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	108334268	108334268	A	G	SNP	ANGPT1	ENST00000517746	human	ensembl	74_37	-1	known	silent	c.664	p.L222	0.933	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT1	HGNC	ENSG00000154188				24	0	0	204	16	7.27273
SCRIB	0	genome.wustl.edu	37	8	144891180	144891180	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	144891180	144891180	C	A	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.1714	p.A572S	1.000	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				31	0	0	170	9	5.02793
BMP1	0	genome.wustl.edu	37	8	22064885	22064885	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	22064885	22064885	C	T	SNP	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	nonsense	c.2431	p.R811*	0.879	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				79	0	0	294	87	22.8346
CSMD1	0	genome.wustl.edu	37	8	2806830	2806830	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	2806830	2806830	C	G	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.10396	p.E3466Q	0.906	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				22	0	0	86	5	5.49451
ANK1	0	genome.wustl.edu	37	8	41530411	41530411	+	Silent	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	41530411	41530411	G	A	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	silent	c.4557	p.D1519	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				9	0	0	74	5	6.32911
KAT6A	0	genome.wustl.edu	37	8	41836209	41836209	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	41836209	41836209	T	C	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.994	p.T332A	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				102	0	0	818	57	6.51429
SNTG1	0	genome.wustl.edu	37	8	51465669	51465669	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	51465669	51465669	T	G	SNP	SNTG1	ENST00000518864	human	ensembl	74_37	+1	known	missense	c.740	p.L247R	1.000	smart_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481				29	0	0	174	19	9.84456
PREX2	0	genome.wustl.edu	37	8	69005938	69005938	+	Silent	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	69005938	69005938	T	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	silent	c.2349	p.A783	0.989	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				30	0	0	333	18	5.12821
CPQ	0	genome.wustl.edu	37	8	97797433	97797433	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	97797433	97797433	T	G	SNP	CPQ	ENST00000220763	human	ensembl	74_37	+1	known	missense	c.308	p.V103G	0.979	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	CPQ	HGNC	ENSG00000104324				27	0	0	165	14	7.82123
PTBP3	0	genome.wustl.edu	37	9	114997138	114997138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	9	114997138	114997138	G	A	SNP	PTBP3	ENST00000458258	human	ensembl	74_37	-1	known	missense	c.944	p.A315V	1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP3	HGNC	ENSG00000119314				21	0	0	85	9	9.57447
TLR4	0	genome.wustl.edu	37	9	120475898	120475898	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	9	120475898	120475898	T	G	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.1492	p.L498V	0.773	pirsf_Toll-like_receptor,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				24	0	0	155	30	16.2162
BRINP1	0	genome.wustl.edu	37	9	122075621	122075621	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	9	122075621	122075621	A	C	SNP	BRINP1	ENST00000265922	human	ensembl	74_37	-1	known	missense	c.13	p.F5V	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP1	HGNC	ENSG00000078725				26	0	0	105	12	10.2564
PRRC2B	0	genome.wustl.edu	37	9	134305594	134305594	+	Silent	SNP	C	C	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	9	134305594	134305594	C	G	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	silent	c.63	p.L21	1.000	pfam_BAT2_N	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				9	0	0	34	12	26.087
C9orf9	0	genome.wustl.edu	37	9	135762799	135762799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	9	135762799	135762799	G	A	SNP	C9orf9	ENST00000356311	human	ensembl	74_37	+1	known	missense	c.188	p.R63Q	1.000	NULL	NULL	-	no_errors	C9orf9	HGNC	ENSG00000165698				103	0	0	302	121	28.6052
CARD9	0	genome.wustl.edu	37	9	139265018	139265018	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	9	139265018	139265018	C	T	SNP	CARD9	ENST00000371732	human	ensembl	74_37	-1	known	missense	c.763	p.A255T	0.523	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796				14	0	0	34	17	33.3333
IFNB1	0	genome.wustl.edu	37	9	21077392	21077392	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	9	21077392	21077392	G	C	SNP	IFNB1	ENST00000380232	human	ensembl	74_37	-1	known	nonsense	c.477	p.Y159*	0.955	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNB1	HGNC	ENSG00000171855				58	0	0	384	29	7.02179
TAF1L	0	genome.wustl.edu	37	9	32633779	32633779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	9	32633779	32633779	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.1799	p.R600Q	0.996	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				106	0	0	352	164	31.7829
RORB	0	genome.wustl.edu	37	9	77300519	77300519	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	9	77300519	77300519	C	T	SNP	RORB	ENST00000396204	human	ensembl	74_37	+1	known	silent	c.1398	p.A466	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	RORB	HGNC	ENSG00000198963				50	0	0	222	20	8.26446
ENSG00000212884	0	genome.wustl.edu	37	GL000205.1	117582	117582	+	Silent	SNP	C	C	T			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	GL000205.1	117582	117582	C	T	SNP	ENSG00000212884	ENST00000391571	human	ensembl	74_37	+1	known	silent	c.213	p.A71	NULL	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	AC011841.1	Clone_based_ensembl_gene	ENSG00000212884				18	0	0	48	17	26.1538
GPRASP2	0	genome.wustl.edu	37	X	101970603	101970603	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	X	101970603	101970603	G	C	SNP	GPRASP2	ENST00000332262	human	ensembl	74_37	+1	known	missense	c.806	p.R269T	0.563	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301				53	0	0	216	57	20.8791
SERPINA7	0	genome.wustl.edu	37	X	105281009	105281009	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	X	105281009	105281009	A	C	SNP	SERPINA7	ENST00000327674	human	ensembl	74_37	-1	known	missense	c.41	p.L14R	0.584	superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA7	HGNC	ENSG00000123561				25	0	0	200	18	8.25688
RGAG1	0	genome.wustl.edu	37	X	109696914	109696914	+	Silent	SNP	T	T	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	X	109696914	109696914	T	G	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	silent	c.3069	p.A1023	0.116	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978				61	0	0	331	31	8.56354
ACTRT1	0	genome.wustl.edu	37	X	127185305	127185305	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	X	127185305	127185305	A	C	SNP	ACTRT1	ENST00000371124	human	ensembl	74_37	-1	known	missense	c.881	p.L294R	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT1	HGNC	ENSG00000123165				53	0	0	239	18	7.00389
PQBP1	0	genome.wustl.edu	37	X	48759272	48759272	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	X	48759272	48759272	A	G	SNP	PQBP1	ENST00000218224	human	ensembl	74_37	+1	known	missense	c.245	p.N82S	0.966	superfamily_WW_dom	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	PQBP1	HGNC	ENSG00000102103				26	0	0	109	7	6.03448
GSPT2	0	genome.wustl.edu	37	X	51487269	51487269	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	X	51487269	51487269	A	G	SNP	GSPT2	ENST00000340438	human	ensembl	74_37	+1	known	missense	c.547	p.K183E	0.999	NULL	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom	-	no_errors	GSPT2	HGNC	ENSG00000189369				9	0	0	48	5	9.43396
MAGEE2	0	genome.wustl.edu	37	X	75004270	75004270	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	X	75004270	75004270	A	G	SNP	MAGEE2	ENST00000373359	human	ensembl	74_37	-1	known	missense	c.617	p.V206A	0.001	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675				19	0	0	116	22	15.942
KLHL4	0	genome.wustl.edu	37	X	86877393	86877393	+	Silent	SNP	T	T	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	X	86877393	86877393	T	C	SNP	KLHL4	ENST00000373114	human	ensembl	74_37	+1	known	silent	c.1107	p.S369	0.979	pfam_BACK,smart_BACK	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271				24	0	0	141	54	27.6923
FADS3	0	genome.wustl.edu	37	11	61643385	61643386	+	In_Frame_Ins	INS	-	-	CACAGC			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	11	61643385	61643386	-	CACAGC	INS	FADS3	ENST00000278829	human	ensembl	74_37	-1	known	in_frame_ins	c.1224_1223	p.408in_frame_insWL	0.933:1.000	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS3	HGNC	ENSG00000221968				71	0	0	157	10	5.98802
DCT	0	genome.wustl.edu	37	13	95121039	95121040	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	13	95121039	95121040	-	A	INS	DCT	ENST00000446125	human	ensembl	74_37	-1	known	frame_shift_ins	c.556_555	p.V185fs	1.000:0.999	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166				75	0	0	277	42	13.1661
NARG2	0	genome.wustl.edu	37	15	60745782	60745782	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	15	60745782	60745782	A	-	DEL	NARG2	ENST00000561114	human	ensembl	74_37	-1	putative	frame_shift_del	c.1145	p.F382fs	0.000	NULL	NULL	-	no_errors	NARG2	HGNC	ENSG00000128915				20	0	0	127	9	6.61765
CHD9	0	genome.wustl.edu	37	16	53243482	53243483	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	16	53243482	53243483	-	A	INS	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	frame_shift_ins	c.1541_1542	p.V517fs	1.000:1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				27	0	0	105	23	17.9688
UBBP4	0	genome.wustl.edu	37	17	21731261	21731261	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	17	21731261	21731261	T	-	DEL	UBBP4	ENST00000584755	human	ensembl	74_37	+1	novel	frame_shift_del	c.563	p.I188fs	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				37	0	0	190	25	11.6279
DPP10	0	genome.wustl.edu	37	2	116485480	116485480	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	116485480	116485480	T	-	DEL	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	frame_shift_del	c.677	p.F227fs	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497				12	0	0	77	11	12.5
TNS1	0	genome.wustl.edu	37	2	218712887	218712889	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	2	218712887	218712889	GCT	-	DEL	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	in_frame_del	c.1978_1976	p.Q659in_frame_del	1.000:1.000:0.994	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				23	0	0	72	7	8.86076
IMPG2	0	genome.wustl.edu	37	3	100963460	100963462	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	100963460	100963462	AAG	-	DEL	IMPG2	ENST00000193391	human	ensembl	74_37	-1	known	in_frame_del	c.1715_1713	p.L572in_frame_del	0.013:0.011:0.003	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG2	HGNC	ENSG00000081148				60	0	0	394	30	7.07547
XPC	0	genome.wustl.edu	37	3	14219966	14219968	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	3	14219966	14219968	CCT	-	DEL	XPC	ENST00000285021	human	ensembl	74_37	-1	known	in_frame_del	c.103_101	p.E34in_frame_del	0.927:0.902:0.864	NULL	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767				33	0	0	102	8	7.27273
DCHS2	0	genome.wustl.edu	37	4	155157044	155157064	+	In_Frame_Del	DEL	TCCAAGGGAGTAAAGAATGAC	TCCAAGGGAGTAAAGAATGAC	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	TCCAAGGGAGTAAAGAATGAC	TCCAAGGGAGTAAAGAATGAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	155157044	155157064	TCCAAGGGAGTAAAGAATGAC	-	DEL	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	in_frame_del	c.7395_7375	p.VILYSLG2459in_frame_del	0.000:0.000:0.000:0.000:0.995:0.996:0.986:1.000:1.000:0.998:1.000:1.000:0.985:0.988:0.988:0.916:0.926:0.047:0.000:0.025:0.013	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				57	0	0	239	15	5.90551
KLF3	0	genome.wustl.edu	37	4	38691387	38691388	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	38691387	38691388	-	A	INS	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	frame_shift_ins	c.582_583	p.I196fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				30	0	0	169	39	18.75
AASDH	0	genome.wustl.edu	37	4	57220269	57220269	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	57220269	57220269	A	-	DEL	AASDH	ENST00000205214	human	ensembl	74_37	-1	known	frame_shift_del	c.1319	p.L440fs	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426				28	0	0	143	12	7.74194
PTPN13	0	genome.wustl.edu	37	4	87622606	87622607	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	4	87622606	87622607	-	A	INS	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	frame_shift_ins	c.847_848	p.P286fs	0.932:0.941	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				16	0	0	93	6	6.06061
AP3S1	0	genome.wustl.edu	37	5	115202418	115202421	+	Frame_Shift_Del	DEL	AAGA	AAGA	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	AAGA	AAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	5	115202418	115202421	AAGA	-	DEL	AP3S1	ENST00000316788	human	ensembl	74_37	+1	known	frame_shift_del	c.121_124	p.K41fs	1.000:1.000:1.000:1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP3S1	HGNC	ENSG00000177879				21	0	0	132	7	5.03597
RIMS2	0	genome.wustl.edu	37	8	105263942	105263942	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	8	105263942	105263942	T	-	DEL	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	frame_shift_del	c.3944	p.F1316fs	1.000	superfamily_C2_dom	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				89	0	0	534	60	10.101
TMC1	0	genome.wustl.edu	37	9	75450910	75450910	+	RNA	DEL	A	A	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	9	75450910	75450910	A	-	DEL	TMC1	ENST00000486417	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.859	-	-	-	no_errors	TMC1	HGNC	ENSG00000165091				16	0	0	110	36	24.6575
MAMLD1	0	genome.wustl.edu	37	X	149639325	149639327	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	X	149639325	149639327	CAG	-	DEL	MAMLD1	ENST00000432680	human	ensembl	74_37	+1	known	in_frame_del	c.1405_1407	p.Q472in_frame_del	0.006:0.000:0.000	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619				11	0	0	129	8	5.83942
ARR3	0	genome.wustl.edu	37	X	69497636	69497637	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8297-01A-12D-2340-08	TCGA-BR-8297-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	722132ab-435b-4269-ac2b-ff9c6ca573ca	d576b3d8-afd5-4475-ac9b-b23933dc84bc	X	69497636	69497637	-	C	INS	ARR3	ENST00000307959	human	ensembl	74_37	+1	known	frame_shift_ins	c.680_681	p.K227fs	0.997:0.998	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	ARR3	HGNC	ENSG00000120500				8	0	0	48	8	14.2857
