Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
UBE4B	0	genome.wustl.edu	37	1	10190583	10190583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	10190583	10190583	C	T	SNP	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	missense	c.1721	p.P574L	1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				392	0	0	138	55	28.4974
KIF1B	0	genome.wustl.edu	37	1	10363659	10363659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	10363659	10363659	G	A	SNP	KIF1B	ENST00000377083	human	ensembl	74_37	+1	known	missense	c.2416	p.V806I	0.009	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523				146	0	0	45	20	30.7692
CASZ1	0	genome.wustl.edu	37	1	10725240	10725240	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	10725240	10725240	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	silent	c.405	p.H135	0.873	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				107	0	0	33	14	29.7872
NTNG1	0	genome.wustl.edu	37	1	107691423	107691423	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	107691423	107691423	A	G	SNP	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	missense	c.208	p.I70V	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				189	0	0	75	33	30.5556
SARS	0	genome.wustl.edu	37	1	109772189	109772189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	109772189	109772189	G	A	SNP	SARS	ENST00000369923	human	ensembl	74_37	+1	known	missense	c.442	p.D148N	1.000	pirsf_Ser-tRNA-ligase_type_1,tigrfam_Ser-tRNA-ligase_type_1	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_1_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-ligase_type_1,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS	HGNC	ENSG00000031698				371	1	0.268817	110	39	26.1745
SYPL2	0	genome.wustl.edu	37	1	110020512	110020512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	110020512	110020512	G	A	SNP	SYPL2	ENST00000369872	human	ensembl	74_37	+1	known	missense	c.529	p.D177N	1.000	pfam_Marvel	pfam_Marvel,prints_Synaptophysin/porin	-	no_errors	SYPL2	HGNC	ENSG00000143028				133	0	0	54	5	8.47458
ATXN7L2	0	genome.wustl.edu	37	1	110029769	110029769	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	110029769	110029769	A	G	SNP	ATXN7L2	ENST00000369870	human	ensembl	74_37	+1	known	missense	c.439	p.R147G	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650				18	0	0	16	3	15.7895
CAPZA1	0	genome.wustl.edu	37	1	113202313	113202313	+	RNA	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	113202313	113202313	G	T	SNP	CAPZA1	ENST00000466066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.086	-	-	-	no_errors	CAPZA1	HGNC	ENSG00000116489				54	0	0	21	10	32.2581
OLFML3	0	genome.wustl.edu	37	1	114522210	114522210	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	114522210	114522210	C	G	SNP	OLFML3	ENST00000320334	human	ensembl	74_37	+1	known	missense	c.72	p.H24Q	1.000	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774				111	0	0	28	13	31.7073
BCAS2	0	genome.wustl.edu	37	1	115123933	115123933	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	115123933	115123933	T	C	SNP	BCAS2	ENST00000369541	human	ensembl	74_37	-1	known	missense	c.173	p.Y58C	1.000	pfam_SPF27	pfam_SPF27	-	no_errors	BCAS2	HGNC	ENSG00000116752				484	0	0	174	71	28.9796
SDF4	0	genome.wustl.edu	37	1	1153181	1153181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	1153181	1153181	C	T	SNP	SDF4	ENST00000263741	human	ensembl	74_37	-1	known	missense	c.916	p.V306M	0.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	SDF4	HGNC	ENSG00000078808				67	0	0	19	7	26.9231
IGSF3	0	genome.wustl.edu	37	1	117142915	117142915	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	117142915	117142915	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	silent	c.1737	p.S579	0.896	smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061				80	0	0	25	3	10.7143
HAO2	0	genome.wustl.edu	37	1	119925576	119925576	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	119925576	119925576	A	C	SNP	HAO2	ENST00000361035	human	ensembl	74_37	+1	known	missense	c.209	p.E70A	0.042	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_IMP_DH_GMPRt,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO2	HGNC	ENSG00000116882				54	0	0	11	11	50
MIIP	0	genome.wustl.edu	37	1	12091856	12091856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	12091856	12091856	G	A	SNP	MIIP	ENST00000436478	human	ensembl	74_37	+1	known	missense	c.1061	p.R354K	0.131	NULL	NULL	-	no_errors	MIIP	HGNC	ENSG00000116691				191	0	0	53	26	32.9114
CPSF3L	0	genome.wustl.edu	37	1	1248900	1248900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	1248900	1248900	C	T	SNP	CPSF3L	ENST00000540437	human	ensembl	74_37	-1	known	missense	c.1048	p.E350K	1.000	pfam_Beta_Casp	pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3L	HGNC	ENSG00000127054				172	0	0	45	16	26.2295
AURKAIP1	0	genome.wustl.edu	37	1	1309707	1309707	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	1309707	1309707	C	T	SNP	AURKAIP1	ENST00000321751	human	ensembl	74_37	-1	known	silent	c.171	p.Q57	0.149	NULL	pfam_DUF1713_mit	-	no_errors	AURKAIP1	HGNC	ENSG00000175756				63	0	0	17	9	34.6154
ATAD3B	0	genome.wustl.edu	37	1	1431165	1431165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	1431165	1431165	C	T	SNP	ATAD3B	ENST00000308647	human	ensembl	74_37	+1	known	missense	c.1915	p.P639S	0.003	NULL	pfam_DUF3523,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD3B	HGNC	ENSG00000160072				60	0	0	14	4	22.2222
PDE4DIP	0	genome.wustl.edu	37	1	144912234	144912234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	144912234	144912234	G	A	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.2041	p.R681C	1.000	superfamily_ARM-type_fold	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				128	0	0	105	15	12.5
PIAS3	0	genome.wustl.edu	37	1	145578250	145578250	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	145578250	145578250	G	A	SNP	PIAS3	ENST00000393045	human	ensembl	74_37	+1	known	silent	c.213	p.G71	0.954	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS3	HGNC	ENSG00000131788				320	1	0.311526	104	153	59.5331
LOC100996735	0	genome.wustl.edu	37	1	148933289	148933289	+	Splice_Site	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	148933289	148933289	A	G	SNP	LOC100996735	ENST00000294715	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.194	-	-	-	no_errors	RP11-14N7.2	Clone_based_vega_gene	ENSG00000232527				33	0	0	30	3	9.09091
SSU72	0	genome.wustl.edu	37	1	1500029	1500029	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	1500029	1500029	G	A	SNP	SSU72	ENST00000359060	human	ensembl	74_37	-1	known	silent	c.348	p.C116	0.001	NULL	pfam_RNA_pol_II_suA,superfamily_Ptyr_pPase_SF	-	no_errors	SSU72	HGNC	ENSG00000160075				105	0	0	42	17	28.8136
CGN	0	genome.wustl.edu	37	1	151498178	151498178	+	Silent	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	151498178	151498178	A	C	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	silent	c.1675	p.R559	0.999	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				87	0	0	46	12	20.6897
HRNR	0	genome.wustl.edu	37	1	152191477	152191477	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	152191477	152191477	G	A	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.2628	p.H876	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				188	0	0	131	38	22.4852
FLG	0	genome.wustl.edu	37	1	152276878	152276878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	152276878	152276878	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.10484	p.S3495L	0.006	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				605	0	0	405	87	17.6829
FLG	0	genome.wustl.edu	37	1	152280586	152280586	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	152280586	152280586	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.6776	p.R2259Q	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				534	0	0	390	86	18.0672
FLG	0	genome.wustl.edu	37	1	152282533	152282533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	152282533	152282533	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.4829	p.R1610Q	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				422	0	0	143	215	60.0559
LCE1D	0	genome.wustl.edu	37	1	152770396	152770396	+	Silent	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	152770396	152770396	C	A	SNP	LCE1D	ENST00000326233	human	ensembl	74_37	+1	known	silent	c.126	p.V42	0.009	NULL	NULL	-	no_errors	LCE1D	HGNC	ENSG00000172155				216	0	0	143	24	14.3713
NUP210L	0	genome.wustl.edu	37	1	154030659	154030659	+	Silent	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	154030659	154030659	T	G	SNP	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	silent	c.3013	p.R1005	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				235	0	0	96	87	47.541
ZBTB7B	0	genome.wustl.edu	37	1	154988174	154988174	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	154988174	154988174	G	A	SNP	ZBTB7B	ENST00000417934	human	ensembl	74_37	+1	known	silent	c.1140	p.Q380	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7B	HGNC	ENSG00000160685				171	0	0	71	8	10.1266
ADAM15	0	genome.wustl.edu	37	1	155028261	155028261	+	Splice_Site	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	155028261	155028261	A	G	SNP	ADAM15	ENST00000472434	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.996	-	-	-	no_errors	ADAM15	HGNC	ENSG00000143537				253	0	0	47	76	61.7886
MEX3A	0	genome.wustl.edu	37	1	156046750	156046750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	156046750	156046750	G	A	SNP	MEX3A	ENST00000532414	human	ensembl	74_37	-1	known	missense	c.1178	p.A393V	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3A	HGNC	ENSG00000254726				34	0	0	29	11	27.5
INSRR	0	genome.wustl.edu	37	1	156811544	156811544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	156811544	156811544	C	T	SNP	INSRR	ENST00000368195	human	ensembl	74_37	-1	known	missense	c.3440	p.R1147H	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSRR	HGNC	ENSG00000027644				242	0	0	132	19	12.5828
FCRL1	0	genome.wustl.edu	37	1	157765955	157765955	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	157765955	157765955	G	T	SNP	FCRL1	ENST00000358292	human	ensembl	74_37	-1	known	missense	c.1097	p.P366H	0.000	NULL	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL1	HGNC	ENSG00000163534				94	0	0	59	19	24.359
CD1A	0	genome.wustl.edu	37	1	158224939	158224939	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	158224939	158224939	C	A	SNP	CD1A	ENST00000289429	human	ensembl	74_37	+1	known	missense	c.124	p.Q42K	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1A	HGNC	ENSG00000158477				147	0	0	117	29	19.863
CD1A	0	genome.wustl.edu	37	1	158224948	158224948	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	158224948	158224948	G	A	SNP	CD1A	ENST00000289429	human	ensembl	74_37	+1	known	missense	c.133	p.V45I	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1A	HGNC	ENSG00000158477				150	0	0	119	29	19.5946
MNDA	0	genome.wustl.edu	37	1	158813818	158813818	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	158813818	158813818	C	T	SNP	MNDA	ENST00000368141	human	ensembl	74_37	+1	known	missense	c.476	p.P159L	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563				308	1	0.323625	217	34	13.5458
CADM3	0	genome.wustl.edu	37	1	159163671	159163671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	159163671	159163671	C	T	SNP	CADM3	ENST00000368124	human	ensembl	74_37	+1	known	missense	c.634	p.R212C	0.000	pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM3	HGNC	ENSG00000162706				74	0	0	25	32	56.1404
IGSF8	0	genome.wustl.edu	37	1	160062767	160062767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	160062767	160062767	C	T	SNP	IGSF8	ENST00000314485	human	ensembl	74_37	-1	known	missense	c.1259	p.R420H	0.997	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	IGSF8	HGNC	ENSG00000162729				79	0	0	40	6	13.0435
ATP1A4	0	genome.wustl.edu	37	1	160121890	160121890	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	160121890	160121890	A	T	SNP	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	missense	c.60	p.R20S	0.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				88	0	0	55	13	19.1176
CASQ1	0	genome.wustl.edu	37	1	160165279	160165279	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	160165279	160165279	G	T	SNP	CASQ1	ENST00000368078	human	ensembl	74_37	+1	known	missense	c.606	p.E202D	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ1	HGNC	ENSG00000143318				172	0	0	78	51	39.5349
VANGL2	0	genome.wustl.edu	37	1	160390844	160390844	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	160390844	160390844	A	C	SNP	VANGL2	ENST00000368061	human	ensembl	74_37	+1	known	missense	c.940	p.N314H	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738				86	0	0	51	11	17.7419
SLAMF7	0	genome.wustl.edu	37	1	160721212	160721212	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	160721212	160721212	G	C	SNP	SLAMF7	ENST00000368043	human	ensembl	74_37	+1	known	missense	c.847	p.E283Q	0.003	NULL	pfam_Ig_V-set,pfscan_Ig-like_dom	-	no_errors	SLAMF7	HGNC	ENSG00000026751				192	0	0	167	57	25.4464
ADAMTS4	0	genome.wustl.edu	37	1	161163914	161163914	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	161163914	161163914	G	A	SNP	ADAMTS4	ENST00000367996	human	ensembl	74_37	-1	known	silent	c.1359	p.F453	0.783	smart_ADAM_Cys-rich	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS4	HGNC	ENSG00000158859				231	0	0	102	22	17.7419
HSPA6	0	genome.wustl.edu	37	1	161495916	161495916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	161495916	161495916	G	A	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	missense	c.1468	p.V490M	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				106	0	0	32	39	54.9296
SPEN	0	genome.wustl.edu	37	1	16263675	16263675	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	16263675	16263675	T	C	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	silent	c.10044	p.G3348	0.922	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				179	0	0	51	21	29.1667
CLCNKA	0	genome.wustl.edu	37	1	16358730	16358730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	16358730	16358730	G	A	SNP	CLCNKA	ENST00000331433	human	ensembl	74_37	+1	known	missense	c.1789	p.A597T	0.995	pfam_CBS_dom,smart_CBS_dom	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510				158	0	0	40	12	23.0769
LMX1A	0	genome.wustl.edu	37	1	165218837	165218837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	165218837	165218837	C	T	SNP	LMX1A	ENST00000294816	human	ensembl	74_37	-1	known	missense	c.304	p.A102T	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1A	HGNC	ENSG00000162761				73	0	0	50	13	20.6349
SELE	0	genome.wustl.edu	37	1	169699580	169699580	+	Silent	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	169699580	169699580	G	T	SNP	SELE	ENST00000333360	human	ensembl	74_37	-1	known	silent	c.708	p.A236	0.554	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELE	HGNC	ENSG00000007908				137	0	0	107	25	18.9394
SUCO	0	genome.wustl.edu	37	1	172558186	172558186	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	172558186	172558186	C	T	SNP	SUCO	ENST00000608151	human	ensembl	74_37	+1	known	nonsense	c.2401	p.R801*	1.000	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUCO	HGNC	ENSG00000094975				83	0	0	114	13	10.2362
PADI2	0	genome.wustl.edu	37	1	17397901	17397901	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	17397901	17397901	C	A	SNP	PADI2	ENST00000375486	human	ensembl	74_37	-1	known	missense	c.1635	p.Q545H	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115				76	0	0	48	3	5.88235
PADI3	0	genome.wustl.edu	37	1	17597402	17597402	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	17597402	17597402	A	G	SNP	PADI3	ENST00000375460	human	ensembl	74_37	+1	known	missense	c.860	p.D287G	1.000	pfam_PAD_C,superfamily_Prot_Arg_deaminase_cen_dom,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619				129	0	0	33	11	25
RFWD2	0	genome.wustl.edu	37	1	176015447	176015447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	176015447	176015447	G	A	SNP	RFWD2	ENST00000367669	human	ensembl	74_37	-1	known	missense	c.1291	p.R431W	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,superfamily_WD40_repeat_dom,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RFWD2	HGNC	ENSG00000143207				59	0	0	29	42	59.1549
ASTN1	0	genome.wustl.edu	37	1	177001771	177001771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	177001771	177001771	C	T	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	missense	c.686	p.G229D	1.000	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				125	0	0	91	29	24.1667
BRINP2	0	genome.wustl.edu	37	1	177199054	177199054	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	177199054	177199054	G	A	SNP	BRINP2	ENST00000361539	human	ensembl	74_37	+1	known	silent	c.42	p.P14	0.908	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP2	HGNC	ENSG00000198797				91	0	0	85	9	9.57447
GLUL	0	genome.wustl.edu	37	1	182353564	182353564	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	182353564	182353564	A	G	SNP	GLUL	ENST00000311223	human	ensembl	74_37	-1	known	silent	c.1098	p.D366	0.296	NULL	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821				52	0	0	31	5	13.8889
DHX9	0	genome.wustl.edu	37	1	182844070	182844070	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	182844070	182844070	A	G	SNP	DHX9	ENST00000367549	human	ensembl	74_37	+1	known	missense	c.1796	p.D599G	1.000	superfamily_P-loop_NTPase	pfam_dsRNA-bd_dom,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_dsRNA-bd_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_dsRNA-bd_dom	-	no_errors	DHX9	HGNC	ENSG00000135829				109	0	0	61	50	45.045
LAMC1	0	genome.wustl.edu	37	1	183079760	183079760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	183079760	183079760	C	T	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	missense	c.992	p.A331V	1.000	pfam_EGF_laminin,smart_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				294	0	0	224	41	15.4717
PRG4	0	genome.wustl.edu	37	1	186273298	186273298	+	Silent	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	186273298	186273298	T	G	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	silent	c.378	p.S126	0.617	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				116	0	0	44	75	63.0252
BRINP3	0	genome.wustl.edu	37	1	190233999	190233999	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	190233999	190233999	A	C	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.614	p.I205R	1.000	smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				120	0	0	81	26	24.2991
RGS1	0	genome.wustl.edu	37	1	192548282	192548282	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	192548282	192548282	C	A	SNP	RGS1	ENST00000367459	human	ensembl	74_37	+1	known	missense	c.460	p.R154S	0.007	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS1	HGNC	ENSG00000090104				161	0	0	95	21	18.1034
UBR4	0	genome.wustl.edu	37	1	19441312	19441312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	19441312	19441312	C	T	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.11195	p.R3732Q	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				236	0	0	89	47	34.5588
ASPM	0	genome.wustl.edu	37	1	197070110	197070110	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	197070110	197070110	T	A	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.8271	p.K2757N	0.000	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				107	0	0	46	53	53.5354
PTPRC	0	genome.wustl.edu	37	1	198701498	198701498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	198701498	198701498	C	T	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	missense	c.2044	p.R682C	1.000	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				63	0	0	30	34	53.125
LRRN2	0	genome.wustl.edu	37	1	204588700	204588700	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	204588700	204588700	C	G	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.421	p.A141P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				366	0	0	117	42	26.4151
PLXNA2	0	genome.wustl.edu	37	1	208216456	208216456	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	208216456	208216456	G	A	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	nonsense	c.3967	p.R1323*	0.998	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				123	0	0	30	21	41.1765
TRAF3IP3	0	genome.wustl.edu	37	1	209933484	209933484	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	209933484	209933484	C	A	SNP	TRAF3IP3	ENST00000367024	human	ensembl	74_37	+1	known	missense	c.100	p.R34S	0.975	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790				70	0	0	23	16	41.0256
DIEXF	0	genome.wustl.edu	37	1	210004282	210004282	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	210004282	210004282	G	A	SNP	DIEXF	ENST00000491415	human	ensembl	74_37	+1	known	silent	c.282	p.E94	0.568	NULL	pfam_Digest_organ_expansion_fac-prd,superfamily_P-loop_NTPase	-	no_errors	DIEXF	HGNC	ENSG00000117597				152	0	0	92	35	27.5591
ALPL	0	genome.wustl.edu	37	1	21903914	21903914	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	21903914	21903914	C	T	SNP	ALPL	ENST00000374832	human	ensembl	74_37	+1	known	missense	c.1348	p.R450C	1.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPL	HGNC	ENSG00000162551				147	0	0	34	15	30.6122
IARS2	0	genome.wustl.edu	37	1	220311323	220311323	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	220311323	220311323	G	T	SNP	IARS2	ENST00000302637	human	ensembl	74_37	+1	known	missense	c.2113	p.V705F	0.996	pfam_aa-tRNA-synth_Ia,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS2	HGNC	ENSG00000067704				131	0	0	105	37	26.0563
RAB3GAP2	0	genome.wustl.edu	37	1	220327384	220327384	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	220327384	220327384	A	G	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	missense	c.3571	p.F1191L	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				122	0	0	112	34	23.2877
HSPG2	0	genome.wustl.edu	37	1	22199882	22199882	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	22199882	22199882	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3779	p.G1260A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				425	0	0	125	42	25.1497
EPHX1	0	genome.wustl.edu	37	1	226032198	226032198	+	Splice_Site	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	226032198	226032198	G	A	SNP	EPHX1	ENST00000272167	human	ensembl	74_37	+1	known	splice_site	c.1041-1	e7-1	1.000	-	-	-	no_errors	EPHX1	HGNC	ENSG00000143819				143	0	0	58	22	27.5
ARF1	0	genome.wustl.edu	37	1	228285130	228285130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	228285130	228285130	G	A	SNP	ARF1	ENST00000272102	human	ensembl	74_37	+1	known	missense	c.236	p.R79H	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARF1	HGNC	ENSG00000143761				188	0	0	64	27	29.6703
GUK1	0	genome.wustl.edu	37	1	228334592	228334592	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	228334592	228334592	C	T	SNP	GUK1	ENST00000366722	human	ensembl	74_37	+1	known	silent	c.204	p.G68	0.004	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like,tigrfam_Guanylate_kinase	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like,tigrfam_Guanylate_kinase	-	no_errors	GUK1	HGNC	ENSG00000143774				191	0	0	47	13	21.6667
OBSCN	0	genome.wustl.edu	37	1	228434292	228434292	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	228434292	228434292	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3821	p.A1274G	0.014	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				238	0	0	55	29	34.5238
OBSCN	0	genome.wustl.edu	37	1	228538598	228538598	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	228538598	228538598	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.18373	p.A6125T	0.041	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				149	0	0	33	7	17.5
NUP133	0	genome.wustl.edu	37	1	229619808	229619808	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	229619808	229619808	A	G	SNP	NUP133	ENST00000261396	human	ensembl	74_37	-1	known	missense	c.1585	p.Y529H	0.997	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248				79	0	0	36	18	33.3333
TRIM67	0	genome.wustl.edu	37	1	231299602	231299602	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	231299602	231299602	C	T	SNP	TRIM67	ENST00000366652	human	ensembl	74_37	+1	known	missense	c.887	p.T296M	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283				15	0	0	3	3	50
NTPCR	0	genome.wustl.edu	37	1	233105691	233105691	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	233105691	233105691	G	A	SNP	NTPCR	ENST00000366628	human	ensembl	74_37	+1	known	missense	c.331	p.V111I	0.543	pfam_Nuc-triphosphatase_THEP1,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Nuc-triphosphatase_THEP1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NTPCR	HGNC	ENSG00000135778				169	0	0	98	8	7.54717
RYR2	0	genome.wustl.edu	37	1	237755119	237755119	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	237755119	237755119	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.4235	p.R1412Q	0.986	pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				51	0	0	16	19	54.2857
PLD5	0	genome.wustl.edu	37	1	242511409	242511409	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	242511409	242511409	G	A	SNP	PLD5	ENST00000536534	human	ensembl	74_37	-1	known	nonsense	c.325	p.R109*	1.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287				237	0	0	103	45	30.4054
ZNF695	0	genome.wustl.edu	37	1	247163303	247163303	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	247163303	247163303	C	T	SNP	ZNF695	ENST00000339986	human	ensembl	74_37	-1	known	missense	c.77	p.R26Q	0.700	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472				135	0	0	62	22	26.1905
OR6F1	0	genome.wustl.edu	37	1	247876039	247876039	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	247876039	247876039	T	C	SNP	OR6F1	ENST00000302084	human	ensembl	74_37	-1	known	missense	c.19	p.T7A	0.027	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6F1	HGNC	ENSG00000169214				172	0	0	55	57	50.8929
HMGN2	0	genome.wustl.edu	37	1	26801762	26801762	+	RNA	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	26801762	26801762	G	T	SNP	HMGN2	ENST00000460563	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGN2	HGNC	ENSG00000198830				12	0	0	7	6	46.1538
SRSF4	0	genome.wustl.edu	37	1	29475301	29475301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	29475301	29475301	C	T	SNP	SRSF4	ENST00000373795	human	ensembl	74_37	-1	known	missense	c.1106	p.R369H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF4	HGNC	ENSG00000116350				72	0	0	29	14	32.5581
BAI2	0	genome.wustl.edu	37	1	32193178	32193178	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	32193178	32193178	C	A	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	missense	c.4601	p.S1534I	0.966	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753				31	0	0	8	4	33.3333
PRDM16	0	genome.wustl.edu	37	1	3328286	3328286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	3328286	3328286	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	missense	c.1525	p.A509T	0.048	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				380	0	0	88	42	32.3077
ARHGEF16	0	genome.wustl.edu	37	1	3386085	3386085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	3386085	3386085	G	A	SNP	ARHGEF16	ENST00000378378	human	ensembl	74_37	+1	known	missense	c.950	p.R317Q	0.881	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF16	HGNC	ENSG00000130762				169	0	0	41	9	18
CCDC27	0	genome.wustl.edu	37	1	3669276	3669276	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	3669276	3669276	C	T	SNP	CCDC27	ENST00000294600	human	ensembl	74_37	+1	known	silent	c.231	p.D77	0.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592				120	0	0	19	14	42.4242
EPHA10	0	genome.wustl.edu	37	1	38227513	38227513	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	38227513	38227513	G	A	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	silent	c.414	p.G138	0.905	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				187	0	0	40	24	37.5
ZNF684	0	genome.wustl.edu	37	1	41012975	41012975	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	41012975	41012975	A	G	SNP	ZNF684	ENST00000372699	human	ensembl	74_37	+1	known	missense	c.980	p.Y327C	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF684	HGNC	ENSG00000117010				240	0	0	91	52	36.3636
HIVEP3	0	genome.wustl.edu	37	1	42049392	42049392	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	42049392	42049392	C	T	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	silent	c.1077	p.T359	0.038	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				191	1	0.520833	58	29	33.3333
CDC20	0	genome.wustl.edu	37	1	43825904	43825904	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	43825904	43825904	C	T	SNP	CDC20	ENST00000310955	human	ensembl	74_37	+1	known	silent	c.597	p.A199	0.449	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC20	HGNC	ENSG00000117399				298	0	0	99	38	27.7372
ZSWIM5	0	genome.wustl.edu	37	1	45501386	45501386	+	Silent	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	45501386	45501386	G	T	SNP	ZSWIM5	ENST00000359600	human	ensembl	74_37	-1	known	silent	c.2265	p.S755	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415				106	0	0	38	17	30.9091
LRRC41	0	genome.wustl.edu	37	1	46745250	46745250	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	46745250	46745250	C	T	SNP	LRRC41	ENST00000343304	human	ensembl	74_37	-1	known	missense	c.2057	p.R686H	0.997	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128				352	1	0.283286	122	7	5.42636
STIL	0	genome.wustl.edu	37	1	47717402	47717402	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	47717402	47717402	A	G	SNP	STIL	ENST00000371877	human	ensembl	74_37	-1	known	silent	c.3273	p.C1091	0.355	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473				329	2	0.60423	186	43	18.7773
RAB3B	0	genome.wustl.edu	37	1	52403066	52403066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	52403066	52403066	G	A	SNP	RAB3B	ENST00000371655	human	ensembl	74_37	-1	known	missense	c.247	p.R83W	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3B	HGNC	ENSG00000169213				263	0	0	76	41	35.0427
C1orf123	0	genome.wustl.edu	37	1	53686074	53686074	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	53686074	53686074	C	T	SNP	C1orf123	ENST00000470385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	C1orf123	HGNC	ENSG00000162384				36	0	0	14	7	33.3333
LDLRAD1	0	genome.wustl.edu	37	1	54476062	54476062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	54476062	54476062	G	A	SNP	LDLRAD1	ENST00000371360	human	ensembl	74_37	-1	known	missense	c.362	p.P121L	0.999	smart_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD1	HGNC	ENSG00000203985				63	0	0	22	6	21.4286
DHCR24	0	genome.wustl.edu	37	1	55337163	55337163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	55337163	55337163	G	A	SNP	DHCR24	ENST00000371269	human	ensembl	74_37	-1	known	missense	c.736	p.R246W	0.041	NULL	pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2	-	no_errors	DHCR24	HGNC	ENSG00000116133				151	0	0	40	22	35.4839
SGIP1	0	genome.wustl.edu	37	1	67160990	67160990	+	RNA	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	67160990	67160990	T	C	SNP	SGIP1	ENST00000320161	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	SGIP1	HGNC	ENSG00000118473				20	0	0	7	5	41.6667
PTGER3	0	genome.wustl.edu	37	1	71512689	71512689	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	71512689	71512689	A	T	SNP	PTGER3	ENST00000354608	human	ensembl	74_37	-1	known	missense	c.572	p.L191Q	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628				132	0	0	43	15	25.8621
PTGER3	0	genome.wustl.edu	37	1	71512701	71512701	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	71512701	71512701	G	T	SNP	PTGER3	ENST00000354608	human	ensembl	74_37	-1	known	missense	c.560	p.A187D	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628				110	0	0	32	15	31.9149
CAMTA1	0	genome.wustl.edu	37	1	7797322	7797322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	7797322	7797322	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.3350	p.A1117V	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				255	0	0	103	40	27.972
WDR63	0	genome.wustl.edu	37	1	85592282	85592282	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	85592282	85592282	G	A	SNP	WDR63	ENST00000294664	human	ensembl	74_37	+1	known	missense	c.2201	p.G734D	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR63	HGNC	ENSG00000162643				76	0	0	44	15	25.4237
GBP1	0	genome.wustl.edu	37	1	89528741	89528741	+	Silent	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	89528741	89528741	A	T	SNP	GBP1	ENST00000370473	human	ensembl	74_37	-1	known	silent	c.177	p.A59	0.998	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP1	HGNC	ENSG00000117228				111	0	0	54	18	25
SPSB1	0	genome.wustl.edu	37	1	9427508	9427508	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	9427508	9427508	C	T	SNP	SPSB1	ENST00000328089	human	ensembl	74_37	+1	known	silent	c.696	p.P232	0.657	superfamily_ConA-like_lec_gl_sf,pfscan_SOCS_C	pfam_SPRY_rcpt,pfam_SOCS_C,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB1	HGNC	ENSG00000171621				275	1	0.362319	90	42	31.8182
DNMBP	0	genome.wustl.edu	37	10	101645575	101645575	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	101645575	101645575	C	T	SNP	DNMBP	ENST00000342239	human	ensembl	74_37	-1	known	missense	c.3739	p.E1247K	1.000	NULL	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	DNMBP	HGNC	ENSG00000107554				29	0	0	13	3	18.75
CWF19L1	0	genome.wustl.edu	37	10	101996719	101996719	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	101996719	101996719	G	T	SNP	CWF19L1	ENST00000354105	human	ensembl	74_37	-1	known	missense	c.1262	p.P421H	1.000	pfam_Cwf19-like_C_dom-1	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L1	HGNC	ENSG00000095485				265	0	0	107	26	19.5489
POLL	0	genome.wustl.edu	37	10	103342587	103342587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	103342587	103342587	C	T	SNP	POLL	ENST00000299206	human	ensembl	74_37	-1	known	missense	c.1127	p.G376D	1.000	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_lambd_fingers_domain,smart_DNA-dir_DNA_pol_X,prints_DNA_pol_X_beta-like	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pfscan_BRCT_dom,prints_DNA_pol_X_beta-like,prints_DNA_pol_X	-	no_errors	POLL	HGNC	ENSG00000166169				242	0	0	69	21	23.3333
C10orf76	0	genome.wustl.edu	37	10	103716445	103716445	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	103716445	103716445	G	A	SNP	C10orf76	ENST00000370033	human	ensembl	74_37	-1	known	silent	c.1614	p.G538	0.055	pfam_DUF1741,superfamily_ARM-type_fold	pfam_DUF1741,superfamily_ARM-type_fold	-	no_errors	C10orf76	HGNC	ENSG00000120029				99	0	0	30	18	37.5
PITX3	0	genome.wustl.edu	37	10	103990802	103990802	+	Silent	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	103990802	103990802	G	T	SNP	PITX3	ENST00000370002	human	ensembl	74_37	-1	known	silent	c.378	p.A126	0.500	superfamily_Homeodomain-like,pirsf_Homeobox_Pitx/unc30	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PITX3	HGNC	ENSG00000107859				23	0	0	6	5	45.4545
TMEM180	0	genome.wustl.edu	37	10	104230587	104230587	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	104230587	104230587	G	A	SNP	TMEM180	ENST00000238936	human	ensembl	74_37	+1	known	silent	c.417	p.T139	0.131	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM180	HGNC	ENSG00000138111				289	0	0	67	39	36.7925
ACTR1A	0	genome.wustl.edu	37	10	104248022	104248022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	104248022	104248022	C	T	SNP	ACTR1A	ENST00000369905	human	ensembl	74_37	-1	known	missense	c.200	p.G67E	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTR1A	HGNC	ENSG00000138107				198	0	0	58	16	21.6216
PDCD11	0	genome.wustl.edu	37	10	105200319	105200319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	105200319	105200319	G	A	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	missense	c.4421	p.R1474Q	0.000	NULL	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				74	0	0	23	15	39.4737
CALHM2	0	genome.wustl.edu	37	10	105209370	105209370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	105209370	105209370	G	A	SNP	CALHM2	ENST00000260743	human	ensembl	74_37	-1	known	missense	c.329	p.A110V	0.887	NULL	NULL	-	no_errors	CALHM2	HGNC	ENSG00000138172				187	1	0.531915	52	27	34.1772
DUSP5	0	genome.wustl.edu	37	10	112258051	112258051	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	112258051	112258051	G	A	SNP	DUSP5	ENST00000369583	human	ensembl	74_37	+1	known	missense	c.172	p.G58S	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pirsf_MKP,pfscan_Rhodanese-like_dom,prints_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP5	HGNC	ENSG00000138166				77	0	0	11	5	31.25
ADRA2A	0	genome.wustl.edu	37	10	112838242	112838242	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	112838242	112838242	G	A	SNP	ADRA2A	ENST00000280155	human	ensembl	74_37	+1	known	missense	c.488	p.R163H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADR_fam	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_Musac_Ach_rcpt	-	no_errors	ADRA2A	HGNC	ENSG00000150594				95	0	0	23	13	36.1111
CCDC172	0	genome.wustl.edu	37	10	118117366	118117366	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	118117366	118117366	A	G	SNP	CCDC172	ENST00000333254	human	ensembl	74_37	+1	known	missense	c.569	p.N190S	0.105	NULL	NULL	-	no_errors	CCDC172	HGNC	ENSG00000182645				55	0	0	19	7	26.9231
EIF3A	0	genome.wustl.edu	37	10	120801712	120801712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	120801712	120801712	C	T	SNP	EIF3A	ENST00000369144	human	ensembl	74_37	-1	known	missense	c.3320	p.R1107Q	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581				363	1	0.274725	109	44	28.7582
TACC2	0	genome.wustl.edu	37	10	123845520	123845520	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	123845520	123845520	G	A	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.3505	p.G1169R	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				73	0	0	45	3	6.25
CHST15	0	genome.wustl.edu	37	10	125805494	125805494	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	125805494	125805494	G	A	SNP	CHST15	ENST00000346248	human	ensembl	74_37	-1	known	nonsense	c.235	p.R79*	0.999	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	CHST15	HGNC	ENSG00000182022				147	0	0	45	24	34.7826
OAT	0	genome.wustl.edu	37	10	126097148	126097148	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	126097148	126097148	C	T	SNP	OAT	ENST00000368845	human	ensembl	74_37	-1	known	silent	c.483	p.K161	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_Orn_aminotrans	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_Orn_aminotrans	-	no_errors	OAT	HGNC	ENSG00000065154				162	0	0	49	18	26.8657
GPR123	0	genome.wustl.edu	37	10	134941863	134941863	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	134941863	134941863	C	T	SNP	GPR123	ENST00000607359	human	ensembl	74_37	+1	putative	silent	c.2688	p.G896	0.729	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177				59	0	0	6	3	33.3333
KNDC1	0	genome.wustl.edu	37	10	135020656	135020656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	135020656	135020656	C	T	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	missense	c.3601	p.R1201C	0.999	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				29	0	0	10	6	37.5
TUBGCP2	0	genome.wustl.edu	37	10	135099117	135099117	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	135099117	135099117	G	T	SNP	TUBGCP2	ENST00000543663	human	ensembl	74_37	-1	known	missense	c.1822	p.H608N	1.000	pfam_TUBGCP	pfam_TUBGCP,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640				65	0	0	12	4	25
PTER	0	genome.wustl.edu	37	10	16528558	16528558	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	16528558	16528558	C	T	SNP	PTER	ENST00000298942	human	ensembl	74_37	+1	known	nonsense	c.640	p.R214*	1.000	pfam_Aryldialkylphosphatase,pfam_TatD_family	pfam_Aryldialkylphosphatase,pfam_TatD_family	-	no_errors	PTER	HGNC	ENSG00000165983				134	1	0.740741	64	17	20.9877
CUBN	0	genome.wustl.edu	37	10	16955916	16955916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	16955916	16955916	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.7427	p.R2476Q	0.966	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				217	1	0.458716	67	13	16.25
PTCHD3P1	0	genome.wustl.edu	37	10	29710450	29710450	+	RNA	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	29710450	29710450	T	C	SNP	PTCHD3P1	ENST00000427063	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	PTCHD3P1	HGNC	ENSG00000224597				77	0	0	27	13	32.5
KIAA1462	0	genome.wustl.edu	37	10	30315148	30315148	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	30315148	30315148	C	T	SNP	KIAA1462	ENST00000375377	human	ensembl	74_37	-1	known	missense	c.3929	p.R1310H	0.000	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757				151	1	0.657895	71	32	31.068
MAP3K8	0	genome.wustl.edu	37	10	30739267	30739267	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	30739267	30739267	C	T	SNP	MAP3K8	ENST00000263056	human	ensembl	74_37	+1	known	silent	c.585	p.G195	0.041	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K8	HGNC	ENSG00000107968				174	0	0	44	18	29.0323
ZNF33B	0	genome.wustl.edu	37	10	43088761	43088761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	43088761	43088761	G	A	SNP	ZNF33B	ENST00000359467	human	ensembl	74_37	-1	known	missense	c.1637	p.T546M	0.995	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33B	HGNC	ENSG00000196693				251	0	0	112	64	36.3636
ZNF32-AS2	0	genome.wustl.edu	37	10	44141585	44141585	+	RNA	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	44141585	44141585	C	A	SNP	ZNF32-AS2	ENST00000418966	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF32-AS2	HGNC	ENSG00000230565				70	0	0	32	10	23.8095
NPY4R	0	genome.wustl.edu	37	10	47087582	47087582	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	47087582	47087582	C	T	SNP	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	silent	c.799	p.L267	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174				162	0	0	77	14	15.3846
SLC18A3	0	genome.wustl.edu	37	10	50819360	50819360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	50819360	50819360	G	A	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	missense	c.574	p.A192T	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				59	0	0	22	14	38.8889
SLC18A3	0	genome.wustl.edu	37	10	50819836	50819836	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	50819836	50819836	G	A	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	silent	c.1050	p.A350	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				205	0	0	55	19	25.6757
AGAP6	0	genome.wustl.edu	37	10	51754188	51754188	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	51754188	51754188	A	G	SNP	AGAP6	ENST00000374056	human	ensembl	74_37	+1	known	missense	c.326	p.H109R	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP6	HGNC	ENSG00000204149				90	0	0	59	4	6.34921
IL2RA	0	genome.wustl.edu	37	10	6063591	6063591	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	6063591	6063591	C	A	SNP	IL2RA	ENST00000379959	human	ensembl	74_37	-1	known	missense	c.433	p.G145W	0.995	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	IL2RA	HGNC	ENSG00000134460				206	0	0	71	29	29
PRKCQ	0	genome.wustl.edu	37	10	6472782	6472782	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	6472782	6472782	C	T	SNP	PRKCQ	ENST00000263125	human	ensembl	74_37	-1	known	missense	c.1955	p.R652Q	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675				128	0	0	51	14	21.5385
LRRTM3	0	genome.wustl.edu	37	10	68687864	68687864	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	68687864	68687864	C	T	SNP	LRRTM3	ENST00000361320	human	ensembl	74_37	+1	known	missense	c.1190	p.P397L	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739				106	0	0	36	25	40.9836
SGPL1	0	genome.wustl.edu	37	10	72636413	72636413	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	72636413	72636413	G	T	SNP	SGPL1	ENST00000373202	human	ensembl	74_37	+1	known	nonsense	c.1561	p.G521*	1.000	NULL	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SGPL1	HGNC	ENSG00000166224				206	0	0	71	33	31.7308
SFMBT2	0	genome.wustl.edu	37	10	7269822	7269822	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	7269822	7269822	G	A	SNP	SFMBT2	ENST00000361972	human	ensembl	74_37	-1	known	nonsense	c.1198	p.R400*	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879				126	0	0	51	27	34.6154
UNC5B	0	genome.wustl.edu	37	10	73047450	73047450	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	73047450	73047450	G	A	SNP	UNC5B	ENST00000335350	human	ensembl	74_37	+1	known	missense	c.829	p.A277T	0.554	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Ig_I-set,pfam_Death_domain,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5B	HGNC	ENSG00000107731				189	1	0.526316	41	19	31.6667
CDH23	0	genome.wustl.edu	37	10	73537990	73537990	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	73537990	73537990	C	T	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	silent	c.5127	p.H1709	0.864	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				134	0	0	35	13	27.0833
PPP3CB	0	genome.wustl.edu	37	10	75239252	75239252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	75239252	75239252	G	A	SNP	PPP3CB	ENST00000394829	human	ensembl	74_37	-1	known	missense	c.109	p.R37C	1.000	NULL	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CB	HGNC	ENSG00000107758				130	0	0	86	23	21.1009
USP54	0	genome.wustl.edu	37	10	75276308	75276308	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	75276308	75276308	C	T	SNP	USP54	ENST00000339859	human	ensembl	74_37	-1	known	silent	c.3876	p.T1292	0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP54	HGNC	ENSG00000166348				188	0	0	74	31	29.5238
SYNPO2L	0	genome.wustl.edu	37	10	75407549	75407549	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	75407549	75407549	T	C	SNP	SYNPO2L	ENST00000394810	human	ensembl	74_37	-1	known	missense	c.1861	p.T621A	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317				233	0	0	59	27	31.3953
DUSP13	0	genome.wustl.edu	37	10	76855437	76855437	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	76855437	76855437	A	G	SNP	DUSP13	ENST00000491677	human	ensembl	74_37	-1	known	missense	c.677	p.L226P	0.989	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP13	HGNC	ENSG00000079393				359	0	0	103	40	27.972
DLG5	0	genome.wustl.edu	37	10	79579711	79579711	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	79579711	79579711	C	T	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	silent	c.3468	p.S1156	0.019	NULL	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				224	0	0	75	28	27.1845
DYDC2	0	genome.wustl.edu	37	10	82122250	82122250	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	82122250	82122250	A	G	SNP	DYDC2	ENST00000372198	human	ensembl	74_37	+1	known	silent	c.93	p.A31	0.877	pfam_Dpy-30_motif	pfam_Dpy-30_motif	-	no_errors	DYDC2	HGNC	ENSG00000133665				99	0	0	42	16	27.5862
DYDC2	0	genome.wustl.edu	37	10	82126484	82126484	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	82126484	82126484	T	G	SNP	DYDC2	ENST00000372198	human	ensembl	74_37	+1	known	missense	c.353	p.F118C	0.003	NULL	pfam_Dpy-30_motif	-	no_errors	DYDC2	HGNC	ENSG00000133665				262	0	0	125	39	23.7805
CCSER2	0	genome.wustl.edu	37	10	86132141	86132141	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	86132141	86132141	C	T	SNP	CCSER2	ENST00000372088	human	ensembl	74_37	+1	known	missense	c.1333	p.P445S	0.288	NULL	NULL	-	no_errors	CCSER2	HGNC	ENSG00000107771				235	0	0	73	59	44.697
GRID1	0	genome.wustl.edu	37	10	87406989	87406989	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	87406989	87406989	G	A	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	silent	c.2163	p.C721	0.013	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771				527	0	0	167	69	29.2373
SNCG	0	genome.wustl.edu	37	10	88718411	88718411	+	RNA	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	88718411	88718411	C	A	SNP	SNCG	ENST00000465679	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	SNCG	HGNC	ENSG00000173267				58	0	0	11	6	35.2941
HTR7	0	genome.wustl.edu	37	10	92508761	92508761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	92508761	92508761	G	A	SNP	HTR7	ENST00000336152	human	ensembl	74_37	-1	known	missense	c.1130	p.S377F	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT_7_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	HTR7	HGNC	ENSG00000148680				308	0	0	97	40	29.1971
CYP26A1	0	genome.wustl.edu	37	10	94834167	94834167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	94834167	94834167	C	T	SNP	CYP26A1	ENST00000224356	human	ensembl	74_37	+1	known	missense	c.292	p.R98W	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP26A1	HGNC	ENSG00000095596				491	0	0	148	27	15.4286
MYOF	0	genome.wustl.edu	37	10	95069859	95069859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	95069859	95069859	C	T	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.6065	p.R2022H	1.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				120	0	0	44	18	29.0323
PLCE1	0	genome.wustl.edu	37	10	95791574	95791574	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	95791574	95791574	C	T	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	silent	c.771	p.D257	0.010	superfamily_Ras_GEF_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				108	0	0	57	26	31.3253
HOGA1	0	genome.wustl.edu	37	10	99371277	99371277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	99371277	99371277	G	A	SNP	HOGA1	ENST00000370646	human	ensembl	74_37	+1	known	missense	c.845	p.R282H	0.996	pfam_DapA-like	pfam_DapA-like,prints_DapA-like	-	no_errors	HOGA1	HGNC	ENSG00000241935				141	0	0	36	16	30.7692
CASP5	0	genome.wustl.edu	37	11	104872817	104872817	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	104872817	104872817	T	C	SNP	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	missense	c.694	p.M232V	0.868	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757				113	0	0	64	19	22.8916
KBTBD3	0	genome.wustl.edu	37	11	105924527	105924527	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	105924527	105924527	T	C	SNP	KBTBD3	ENST00000526793	human	ensembl	74_37	-1	known	missense	c.889	p.I297V	1.000	pirsf_Kelch-like_gigaxonin	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD3	HGNC	ENSG00000182359				119	0	0	59	27	31.3953
CUL5	0	genome.wustl.edu	37	11	107917010	107917010	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	107917010	107917010	G	T	SNP	CUL5	ENST00000393094	human	ensembl	74_37	+1	known	missense	c.148	p.V50F	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266				111	0	0	55	8	12.6984
SIK2	0	genome.wustl.edu	37	11	111594498	111594498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	111594498	111594498	G	A	SNP	SIK2	ENST00000304987	human	ensembl	74_37	+1	known	missense	c.2426	p.R809Q	0.004	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145				416	0	0	105	43	29.0541
BCO2	0	genome.wustl.edu	37	11	112064635	112064635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	112064635	112064635	G	A	SNP	BCO2	ENST00000357685	human	ensembl	74_37	+1	known	missense	c.551	p.R184Q	0.095	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580				162	0	0	76	25	24.7525
NCAM1	0	genome.wustl.edu	37	11	113105886	113105886	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	113105886	113105886	C	T	SNP	NCAM1	ENST00000533760	human	ensembl	74_37	+1	novel	nonsense	c.1441	p.Q481*	1.000	pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM1	HGNC	ENSG00000149294				57	0	0	21	8	27.5862
ATF4P4	0	genome.wustl.edu	37	11	113660920	113660920	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	113660920	113660920	G	A	SNP	ATF4P4	ENST00000393544	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	ATF4P4	HGNC	ENSG00000256167				8	0	0	3	3	50
USP2	0	genome.wustl.edu	37	11	119230349	119230349	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	119230349	119230349	G	A	SNP	USP2	ENST00000260187	human	ensembl	74_37	-1	known	nonsense	c.847	p.Q283*	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP2	HGNC	ENSG00000036672				102	0	0	35	15	30
TRIM29	0	genome.wustl.edu	37	11	120008124	120008124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	120008124	120008124	C	T	SNP	TRIM29	ENST00000341846	human	ensembl	74_37	-1	known	missense	c.616	p.A206T	0.582	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699				76	0	0	26	10	27.7778
TECTA	0	genome.wustl.edu	37	11	120980130	120980130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	120980130	120980130	G	A	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.409	p.A137T	0.967	smart_Nidogen_extracell_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				94	0	0	45	18	28.5714
SORL1	0	genome.wustl.edu	37	11	121393349	121393349	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	121393349	121393349	C	A	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	missense	c.1459	p.L487I	1.000	smart_VPS10	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				295	0	0	99	44	30.7692
MICAL2	0	genome.wustl.edu	37	11	12246337	12246337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	12246337	12246337	C	T	SNP	MICAL2	ENST00000256194	human	ensembl	74_37	+1	known	missense	c.1658	p.A553V	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL2	HGNC	ENSG00000133816				86	0	0	28	17	37.7778
MICALCL	0	genome.wustl.edu	37	11	12315180	12315180	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	12315180	12315180	C	G	SNP	MICALCL	ENST00000256186	human	ensembl	74_37	+1	known	missense	c.202	p.R68G	0.003	NULL	pfam_DUF3585,smart_ProQ/FinO	-	no_errors	MICALCL	HGNC	ENSG00000133808				481	1	0.207469	192	40	17.2414
ROBO3	0	genome.wustl.edu	37	11	124742441	124742441	+	Silent	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	124742441	124742441	A	C	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	silent	c.1323	p.I441	0.994	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134				93	0	0	31	11	26.1905
VPS26B	0	genome.wustl.edu	37	11	134109914	134109914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	134109914	134109914	G	A	SNP	VPS26B	ENST00000281187	human	ensembl	74_37	+1	known	missense	c.410	p.R137H	1.000	pfam_VPS26,superfamily_Ig_E-set	pfam_VPS26,superfamily_Ig_E-set	-	no_errors	VPS26B	HGNC	ENSG00000151502				105	0	0	47	17	26.5625
NAV2	0	genome.wustl.edu	37	11	20099098	20099098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	20099098	20099098	G	A	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.5152	p.A1718T	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				70	0	0	48	16	25
DBX1	0	genome.wustl.edu	37	11	20177883	20177883	+	Silent	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	20177883	20177883	C	A	SNP	DBX1	ENST00000227256	human	ensembl	74_37	-1	known	silent	c.1026	p.P342	0.303	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	DBX1	HGNC	ENSG00000109851				108	0	0	44	22	33.3333
NLRP6	0	genome.wustl.edu	37	11	281325	281325	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	281325	281325	C	T	SNP	NLRP6	ENST00000312165	human	ensembl	74_37	+1	known	missense	c.1591	p.R531C	0.019	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP6	HGNC	ENSG00000174885				51	0	0	20	9	31.0345
ARL14EP	0	genome.wustl.edu	37	11	30358285	30358285	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	30358285	30358285	G	A	SNP	ARL14EP	ENST00000282032	human	ensembl	74_37	+1	known	silent	c.726	p.L242	0.001	NULL	NULL	-	no_errors	ARL14EP	HGNC	ENSG00000152219				172	0	0	81	40	33.0579
TRAF6	0	genome.wustl.edu	37	11	36520186	36520186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	36520186	36520186	C	T	SNP	TRAF6	ENST00000348124	human	ensembl	74_37	-1	known	missense	c.301	p.A101T	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pirsf_TNF_rcpt--assoc_TRAF,pfscan_Znf_RING	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF6	HGNC	ENSG00000175104				82	0	0	36	13	26.5306
OR51D1	0	genome.wustl.edu	37	11	4661386	4661386	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	4661386	4661386	C	T	SNP	OR51D1	ENST00000357605	human	ensembl	74_37	+1	known	silent	c.366	p.A122	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51D1	HGNC	ENSG00000197428				86	0	0	42	16	27.5862
PACSIN3	0	genome.wustl.edu	37	11	47201865	47201865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	47201865	47201865	C	T	SNP	PACSIN3	ENST00000298838	human	ensembl	74_37	-1	known	missense	c.475	p.A159T	0.002	NULL	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN3	HGNC	ENSG00000165912				176	0	0	54	9	14.2857
PTPMT1	0	genome.wustl.edu	37	11	47593071	47593071	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	47593071	47593071	C	T	SNP	PTPMT1	ENST00000326674	human	ensembl	74_37	+1	novel	missense	c.496	p.R166W	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTPMT1	HGNC	ENSG00000110536				165	0	0	58	26	30.9524
OR4B1	0	genome.wustl.edu	37	11	48239199	48239199	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	48239199	48239199	C	T	SNP	OR4B1	ENST00000309562	human	ensembl	74_37	+1	known	silent	c.838	p.L280	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4B1	HGNC	ENSG00000175619				174	0	0	72	17	19.1011
OR4C13	0	genome.wustl.edu	37	11	49974661	49974661	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	49974661	49974661	G	T	SNP	OR4C13	ENST00000555099	human	ensembl	74_37	+1	known	missense	c.687	p.E229D	0.323	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C13	HGNC	ENSG00000258817				158	0	0	94	41	30.3704
OR51Q1	0	genome.wustl.edu	37	11	5443929	5443929	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	5443929	5443929	C	T	SNP	OR51Q1	ENST00000300778	human	ensembl	74_37	+1	known	nonsense	c.499	p.R167*	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51Q1	HGNC	ENSG00000167360				330	1	0.302115	151	36	19.2513
OR5F1	0	genome.wustl.edu	37	11	55762042	55762042	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	55762042	55762042	C	T	SNP	OR5F1	ENST00000278409	human	ensembl	74_37	-1	known	silent	c.60	p.T20	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5F1	HGNC	ENSG00000149133				164	0	0	64	14	17.9487
OR5AP2	0	genome.wustl.edu	37	11	56409703	56409703	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	56409703	56409703	G	T	SNP	OR5AP2	ENST00000544374	human	ensembl	74_37	-1	known	missense	c.216	p.S72R	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AP2	HGNC	ENSG00000172464				113	0	0	45	20	30.7692
P2RX3	0	genome.wustl.edu	37	11	57118321	57118321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	57118321	57118321	G	A	SNP	P2RX3	ENST00000263314	human	ensembl	74_37	+1	known	missense	c.791	p.R264Q	0.997	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X3_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX3	HGNC	ENSG00000109991				133	0	0	39	24	38.0952
SMTNL1	0	genome.wustl.edu	37	11	57314092	57314092	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	57314092	57314092	G	A	SNP	SMTNL1	ENST00000457912	human	ensembl	74_37	+1	known	missense	c.1361	p.R454Q	0.300	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTNL1	HGNC	ENSG00000214872				72	0	0	23	11	32.3529
OR9I1	0	genome.wustl.edu	37	11	57886281	57886281	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	57886281	57886281	G	A	SNP	OR9I1	ENST00000302610	human	ensembl	74_37	-1	known	silent	c.636	p.S212	0.050	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR9I1	HGNC	ENSG00000172377				92	0	0	50	3	5.66038
OR52N2	0	genome.wustl.edu	37	11	5842064	5842064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	5842064	5842064	C	T	SNP	OR52N2	ENST00000317037	human	ensembl	74_37	+1	known	missense	c.499	p.R167C	0.047	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52N2	HGNC	ENSG00000180988				191	0	0	110	38	25.6757
GLYATL1	0	genome.wustl.edu	37	11	58714625	58714625	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	58714625	58714625	C	A	SNP	GLYATL1	ENST00000317391	human	ensembl	74_37	+1	known	missense	c.65	p.P22H	0.021	pfam_Glycine_N-acyltransferase_N	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYATL1	HGNC	ENSG00000166840				75	0	0	34	12	26.087
PRPF19	0	genome.wustl.edu	37	11	60666067	60666067	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	60666067	60666067	T	C	SNP	PRPF19	ENST00000227524	human	ensembl	74_37	-1	known	silent	c.1086	p.G362	0.982	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Pre-mRNA_splic_Prp19,pfam_Ubox_domain,superfamily_WD40_repeat_dom,smart_Ubox_domain,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF19	HGNC	ENSG00000110107				157	0	0	45	17	27.4194
DAK	0	genome.wustl.edu	37	11	61110303	61110303	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	61110303	61110303	C	T	SNP	DAK	ENST00000394900	human	ensembl	74_37	+1	known	silent	c.852	p.T284	0.113	pfam_Dak1,tigrfam_DhaK_ATP	pfam_Dak1,pfam_DhaL_dom,superfamily_DhaL_dom,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476				83	0	0	24	13	35.1351
SYT7	0	genome.wustl.edu	37	11	61290643	61290643	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	61290643	61290643	G	A	SNP	SYT7	ENST00000263846	human	ensembl	74_37	-1	known	silent	c.1011	p.F337	0.998	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT7	HGNC	ENSG00000011347				233	0	0	72	26	26.5306
FADS2	0	genome.wustl.edu	37	11	61624930	61624930	+	Silent	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	61624930	61624930	G	C	SNP	FADS2	ENST00000278840	human	ensembl	74_37	+1	known	silent	c.810	p.G270	0.997	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS2	HGNC	ENSG00000134824				149	0	0	42	21	33.3333
TAF6L	0	genome.wustl.edu	37	11	62554088	62554088	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	62554088	62554088	T	C	SNP	TAF6L	ENST00000294168	human	ensembl	74_37	+1	known	missense	c.1189	p.W397R	0.986	NULL	pfam_TAF_TATA-bd,pfam_DUF1546,superfamily_Histone-fold,smart_TAF_TATA-bd	-	no_errors	TAF6L	HGNC	ENSG00000162227				64	0	0	9	7	43.75
SLC22A10	0	genome.wustl.edu	37	11	63072184	63072184	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	63072184	63072184	C	T	SNP	SLC22A10	ENST00000332793	human	ensembl	74_37	+1	known	missense	c.1421	p.T474M	0.001	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999				196	1	0.507614	86	32	27.1186
TRPT1	0	genome.wustl.edu	37	11	63992155	63992155	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	63992155	63992155	G	A	SNP	TRPT1	ENST00000394546	human	ensembl	74_37	-1	known	missense	c.368	p.P123L	0.418	pfam_Ptrans_KptA/Tpt1	pfam_Ptrans_KptA/Tpt1	-	no_errors	TRPT1	HGNC	ENSG00000149743				141	0	0	39	7	15.2174
SLC22A12	0	genome.wustl.edu	37	11	64359362	64359362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	64359362	64359362	G	A	SNP	SLC22A12	ENST00000377574	human	ensembl	74_37	+1	known	missense	c.334	p.D112N	0.033	pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A12	HGNC	ENSG00000197891				86	0	0	15	16	51.6129
CDC42EP2	0	genome.wustl.edu	37	11	65088566	65088566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	65088566	65088566	C	T	SNP	CDC42EP2	ENST00000279249	human	ensembl	74_37	+1	known	missense	c.197	p.P66L	0.995	pfam_CRIB_dom,smart_CRIB_dom,pirsf_Cdc42_effector_prot_2	pfam_CRIB_dom,smart_CRIB_dom,pirsf_Cdc42_effector_prot_2,pfscan_CRIB_dom	-	no_errors	CDC42EP2	HGNC	ENSG00000149798				138	0	0	33	27	45
DNHD1	0	genome.wustl.edu	37	11	6520071	6520071	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	6520071	6520071	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	missense	c.626	p.A209V	0.002	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532				232	0	0	52	33	38.8235
EHBP1L1	0	genome.wustl.edu	37	11	65348778	65348778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	65348778	65348778	C	T	SNP	EHBP1L1	ENST00000309295	human	ensembl	74_37	+1	known	missense	c.800	p.A267V	0.327	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442				70	0	0	24	9	27.2727
SNX32	0	genome.wustl.edu	37	11	65617684	65617684	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	65617684	65617684	G	A	SNP	SNX32	ENST00000308342	human	ensembl	74_37	+1	known	missense	c.316	p.E106K	1.000	pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	pfam_Vps5_C,pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX32	HGNC	ENSG00000172803				148	0	0	43	21	32.8125
CST6	0	genome.wustl.edu	37	11	65780823	65780823	+	Silent	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	65780823	65780823	C	A	SNP	CST6	ENST00000312134	human	ensembl	74_37	+1	known	silent	c.402	p.P134	0.998	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST6	HGNC	ENSG00000175315				354	0	0	89	5	5.31915
SLC29A2	0	genome.wustl.edu	37	11	66131818	66131818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	66131818	66131818	G	A	SNP	SLC29A2	ENST00000311161	human	ensembl	74_37	-1	novel	missense	c.1003	p.R335C	1.000	NULL	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A2	HGNC	ENSG00000174669				103	0	0	18	6	25
RRP8	0	genome.wustl.edu	37	11	6622758	6622758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	6622758	6622758	G	A	SNP	RRP8	ENST00000254605	human	ensembl	74_37	-1	known	missense	c.538	p.P180S	0.001	NULL	pfam_Methyltransferase-rel,pfam_Methyltransf_11	-	no_errors	RRP8	HGNC	ENSG00000132275				234	0	0	78	17	17.8947
ADRBK1	0	genome.wustl.edu	37	11	67051203	67051203	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	67051203	67051203	T	C	SNP	ADRBK1	ENST00000308595	human	ensembl	74_37	+1	known	missense	c.1354	p.F452L	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020				238	0	0	45	18	28.5714
CABP4	0	genome.wustl.edu	37	11	67223594	67223594	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	67223594	67223594	A	G	SNP	CABP4	ENST00000545777	human	ensembl	74_37	+1	known	missense	c.370	p.M124V	0.000	NULL	NULL	-	no_errors	CABP4	HGNC	ENSG00000175544				103	0	0	33	10	23.2558
ARAP1	0	genome.wustl.edu	37	11	72408052	72408052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	72408052	72408052	G	A	SNP	ARAP1	ENST00000393609	human	ensembl	74_37	-1	known	missense	c.3142	p.R1048C	0.532	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635				60	0	0	15	9	37.5
SYT9	0	genome.wustl.edu	37	11	7324372	7324372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	7324372	7324372	G	A	SNP	SYT9	ENST00000318881	human	ensembl	74_37	+1	known	missense	c.248	p.R83Q	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743				182	0	0	75	36	32.4324
KCTD14	0	genome.wustl.edu	37	11	77728068	77728068	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	77728068	77728068	G	A	SNP	KCTD14	ENST00000353172	human	ensembl	74_37	-1	known	silent	c.339	p.Y113	0.782	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD14	HGNC	ENSG00000151364				85	0	0	34	14	29.1667
TENM4	0	genome.wustl.edu	37	11	78440668	78440668	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	78440668	78440668	A	G	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	silent	c.3159	p.S1053	0.003	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				203	0	0	52	27	34.1772
OR5P3	0	genome.wustl.edu	37	11	7847414	7847414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	7847414	7847414	C	T	SNP	OR5P3	ENST00000328375	human	ensembl	74_37	-1	known	missense	c.106	p.V36I	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P3	HGNC	ENSG00000182334				149	0	0	66	22	25
CEND1	0	genome.wustl.edu	37	11	788426	788426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	788426	788426	G	A	SNP	CEND1	ENST00000330106	human	ensembl	74_37	-1	known	missense	c.151	p.P51S	1.000	NULL	NULL	-	no_errors	CEND1	HGNC	ENSG00000184524				262	0	0	50	22	30.5556
PNPLA2	0	genome.wustl.edu	37	11	824058	824058	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	824058	824058	C	A	SNP	PNPLA2	ENST00000336615	human	ensembl	74_37	+1	known	missense	c.980	p.P327H	1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA2	HGNC	ENSG00000177666				43	0	0	3	5	62.5
PCF11	0	genome.wustl.edu	37	11	82879875	82879875	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	82879875	82879875	G	A	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	missense	c.2498	p.R833Q	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				79	0	0	30	10	25
FZD4	0	genome.wustl.edu	37	11	86662733	86662733	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	86662733	86662733	G	A	SNP	FZD4	ENST00000531380	human	ensembl	74_37	-1	known	silent	c.1065	p.P355	0.031	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD4	HGNC	ENSG00000174804				130	0	0	50	18	26.4706
ST5	0	genome.wustl.edu	37	11	8752691	8752691	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	8752691	8752691	T	A	SNP	ST5	ENST00000313726	human	ensembl	74_37	-1	known	missense	c.146	p.D49V	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444				49	0	0	14	5	26.3158
CCDC67	0	genome.wustl.edu	37	11	93088580	93088580	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	93088580	93088580	A	G	SNP	CCDC67	ENST00000298050	human	ensembl	74_37	+1	known	missense	c.73	p.I25V	1.000	NULL	superfamily_MHC_II-assoc_invariant_trimer	-	no_errors	CCDC67	HGNC	ENSG00000165325				129	0	0	79	5	5.95238
FOLR4	0	genome.wustl.edu	37	11	94040602	94040602	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	94040602	94040602	G	T	SNP	FOLR4	ENST00000440961	human	ensembl	74_37	+1	novel	missense	c.476	p.C159F	1.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR4	HGNC	ENSG00000183560				80	0	0	37	23	38.3333
STAB2	0	genome.wustl.edu	37	12	104015889	104015889	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	104015889	104015889	G	T	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.487	p.V163L	0.998	smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				93	0	0	41	19	31.6667
STAB2	0	genome.wustl.edu	37	12	104121068	104121068	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	104121068	104121068	C	T	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	silent	c.4875	p.V1625	0.000	pfam_FAS1_domain,superfamily_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				450	1	0.221729	145	61	29.6117
PRDM4	0	genome.wustl.edu	37	12	108128295	108128295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	108128295	108128295	G	A	SNP	PRDM4	ENST00000228437	human	ensembl	74_37	-1	known	missense	c.2098	p.R700C	1.000	pirsf_Znf_PRDM4,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM4	HGNC	ENSG00000110851				204	0	0	106	43	28.8591
PRDM4	0	genome.wustl.edu	37	12	108134747	108134747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	108134747	108134747	G	A	SNP	PRDM4	ENST00000228437	human	ensembl	74_37	-1	known	missense	c.1900	p.R634W	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM4	HGNC	ENSG00000110851				178	0	0	63	25	28.4091
TAS2R10	0	genome.wustl.edu	37	12	10978047	10978047	+	Silent	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	10978047	10978047	T	G	SNP	TAS2R10	ENST00000240619	human	ensembl	74_37	-1	known	silent	c.822	p.S274	0.088	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R10	HGNC	ENSG00000121318				127	0	0	80	29	26.6055
PRH1	0	genome.wustl.edu	37	12	11034940	11034940	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	11034940	11034940	C	G	SNP	PRH1	ENST00000428168	human	ensembl	74_37	-1	known	missense	c.395	p.G132A	0.009	NULL	NULL	-	no_errors	PRH1	HGNC	ENSG00000231887				134	0	0	69	24	25.8065
TAS2R14	0	genome.wustl.edu	37	12	11091290	11091290	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	11091290	11091290	T	C	SNP	TAS2R14	ENST00000537503	human	ensembl	74_37	-1	known	missense	c.517	p.T173A	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R14	HGNC	ENSG00000212127				145	0	0	68	37	35.2381
SH2B3	0	genome.wustl.edu	37	12	111884789	111884789	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	111884789	111884789	A	G	SNP	SH2B3	ENST00000341259	human	ensembl	74_37	+1	putative	missense	c.878	p.Q293R	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology	pfam_Phe_ZIP,pfam_SH2,pfam_Pleckstrin_homology,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B3	HGNC	ENSG00000111252				104	0	0	37	15	28.8462
ACAD10	0	genome.wustl.edu	37	12	112186136	112186136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	112186136	112186136	G	A	SNP	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	missense	c.2594	p.R865H	1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271				239	0	0	92	26	22.0339
HECTD4	0	genome.wustl.edu	37	12	112650376	112650376	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	112650376	112650376	T	C	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.7028	p.Y2343C	1.000	superfamily_ConA-like_lec_gl_sf	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				157	0	0	39	34	46.5753
SRRM4	0	genome.wustl.edu	37	12	119594447	119594447	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	119594447	119594447	A	C	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	missense	c.1680	p.R560S	0.001	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767				18	0	0	8	5	38.4615
CIT	0	genome.wustl.edu	37	12	120208707	120208707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	120208707	120208707	C	T	SNP	CIT	ENST00000392521	human	ensembl	74_37	-1	novel	missense	c.2090	p.R697H	1.000	pirsf_Citron_Rho-interacting_kinase,prints_Tropomyosin	pirsf_Citron_Rho-interacting_kinase,pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,prints_Tropomyosin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CIT	HGNC	ENSG00000122966				171	0	0	66	25	27.4725
RNF10	0	genome.wustl.edu	37	12	121002881	121002881	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	121002881	121002881	C	T	SNP	RNF10	ENST00000413266	human	ensembl	74_37	+1	known	nonsense	c.1687	p.R563*	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF10	HGNC	ENSG00000022840				293	0	0	120	61	33.7017
SBNO1	0	genome.wustl.edu	37	12	123782547	123782547	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	123782547	123782547	C	T	SNP	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	silent	c.4017	p.T1339	0.769	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697				266	0	0	82	28	25.4545
NCOR2	0	genome.wustl.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	124887093	124887093	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	silent	c.1497	p.Q499	0.999	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				10	0	0	9	3	25
UBC	0	genome.wustl.edu	37	12	125397684	125397684	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	125397684	125397684	T	C	SNP	UBC	ENST00000339647	human	ensembl	74_37	-1	known	missense	c.634	p.N212D	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBC	HGNC	ENSG00000150991				428	0	0	177	41	18.8073
RPL22P19	0	genome.wustl.edu	37	12	125420383	125420383	+	RNA	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	125420383	125420383	T	C	SNP	RPL22P19	ENST00000480427	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL22P19	HGNC	ENSG00000241129				9	0	0	2	6	75
ANKLE2	0	genome.wustl.edu	37	12	133331306	133331306	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	133331306	133331306	A	G	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	missense	c.595	p.Y199H	0.995	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915				202	0	0	65	26	28.5714
WBP11	0	genome.wustl.edu	37	12	14944192	14944192	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	14944192	14944192	C	T	SNP	WBP11	ENST00000261167	human	ensembl	74_37	-1	known	missense	c.926	p.R309Q	1.000	NULL	pfam_WW_dom-bd_prot_11	-	no_errors	WBP11	HGNC	ENSG00000084463				75	0	0	36	14	28
C12orf60	0	genome.wustl.edu	37	12	14975984	14975984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	14975984	14975984	C	T	SNP	C12orf60	ENST00000330828	human	ensembl	74_37	+1	known	missense	c.115	p.R39C	0.000	NULL	NULL	-	no_errors	C12orf60	HGNC	ENSG00000182993				93	0	0	58	15	20.5479
CACNA2D4	0	genome.wustl.edu	37	12	1992068	1992068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	1992068	1992068	C	T	SNP	CACNA2D4	ENST00000382722	human	ensembl	74_37	-1	known	missense	c.1450	p.D484N	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D4	HGNC	ENSG00000151062				52	0	0	16	4	20
PDE3A	0	genome.wustl.edu	37	12	20766597	20766597	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	20766597	20766597	A	T	SNP	PDE3A	ENST00000359062	human	ensembl	74_37	+1	known	missense	c.1232	p.E411V	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572				109	0	0	49	16	24.6154
SLCO1B1	0	genome.wustl.edu	37	12	21391984	21391984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	21391984	21391984	C	T	SNP	SLCO1B1	ENST00000256958	human	ensembl	74_37	+1	known	missense	c.1937	p.A646V	0.010	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538				90	0	0	38	10	20.8333
ABCC9	0	genome.wustl.edu	37	12	22035805	22035805	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	22035805	22035805	C	A	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.1914	p.Q638H	0.138	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				101	0	0	64	31	32.6316
IFLTD1	0	genome.wustl.edu	37	12	25671789	25671789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	25671789	25671789	C	T	SNP	IFLTD1	ENST00000458174	human	ensembl	74_37	-1	known	missense	c.1129	p.A377T	0.000	NULL	pfam_Lamin_tail_dom	-	no_errors	IFLTD1	HGNC	ENSG00000152936				210	0	0	80	30	27.2727
ARID2	0	genome.wustl.edu	37	12	46245344	46245344	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	46245344	46245344	G	A	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	silent	c.3438	p.S1146	0.811	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				176	0	0	69	27	28.125
KCNA1	0	genome.wustl.edu	37	12	5021641	5021641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	5021641	5021641	C	T	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	missense	c.1097	p.A366V	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				359	1	0.277778	193	35	15.3509
KCNA1	0	genome.wustl.edu	37	12	5021769	5021769	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	5021769	5021769	T	A	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	missense	c.1225	p.S409T	1.000	prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				559	0	0	239	92	27.7946
AQP5	0	genome.wustl.edu	37	12	50358888	50358888	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	50358888	50358888	G	A	SNP	AQP5	ENST00000293599	human	ensembl	74_37	+1	known	silent	c.726	p.T242	0.226	NULL	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_5,tigrfam_MIP	-	no_errors	AQP5	HGNC	ENSG00000161798				144	0	0	33	17	34
KRT75	0	genome.wustl.edu	37	12	52822136	52822136	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	52822136	52822136	C	G	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1286	p.R429P	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				152	0	0	17	36	67.9245
EIF4B	0	genome.wustl.edu	37	12	53413753	53413753	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	53413753	53413753	T	C	SNP	EIF4B	ENST00000262056	human	ensembl	74_37	+1	known	silent	c.420	p.G140	0.985	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	EIF4B	HGNC	ENSG00000063046				71	0	0	35	11	23.913
ZBTB39	0	genome.wustl.edu	37	12	57398126	57398126	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	57398126	57398126	G	A	SNP	ZBTB39	ENST00000300101	human	ensembl	74_37	-1	known	silent	c.576	p.D192	0.041	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB39	HGNC	ENSG00000166860				336	0	0	100	51	33.7748
LRP1	0	genome.wustl.edu	37	12	57570998	57570998	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	57570998	57570998	C	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.4166	p.P1389Q	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				79	0	0	21	11	34.375
LRIG3	0	genome.wustl.edu	37	12	59272641	59272641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	59272641	59272641	C	T	SNP	LRIG3	ENST00000320743	human	ensembl	74_37	-1	known	missense	c.2048	p.G683E	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG3	HGNC	ENSG00000139263				216	0	0	104	40	27.7778
GRIP1	0	genome.wustl.edu	37	12	66814553	66814553	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	66814553	66814553	T	G	SNP	GRIP1	ENST00000359742	human	ensembl	74_37	-1	known	missense	c.1785	p.K595N	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974				175	0	0	85	36	29.7521
CHD4	0	genome.wustl.edu	37	12	6687228	6687228	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	6687228	6687228	C	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.5279	p.R1760L	1.000	pfam_CHD_C2	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				255	0	0	92	30	24.5902
CHD4	0	genome.wustl.edu	37	12	6692034	6692034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	6692034	6692034	G	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.4300	p.R1434C	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				390	0	0	116	44	27.5
ACRBP	0	genome.wustl.edu	37	12	6749371	6749371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	6749371	6749371	C	T	SNP	ACRBP	ENST00000229243	human	ensembl	74_37	-1	known	missense	c.1280	p.R427H	0.000	NULL	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644				107	0	0	29	12	29.2683
PTPRB	0	genome.wustl.edu	37	12	70948972	70948972	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	70948972	70948972	T	A	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	missense	c.5111	p.K1704I	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				119	0	0	28	17	37.7778
PTPRR	0	genome.wustl.edu	37	12	71286586	71286586	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	71286586	71286586	C	T	SNP	PTPRR	ENST00000283228	human	ensembl	74_37	-1	known	missense	c.230	p.R77H	0.000	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233				270	0	0	132	47	26.257
TRHDE	0	genome.wustl.edu	37	12	72666679	72666679	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	72666679	72666679	G	A	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	missense	c.121	p.V41M	0.990	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				14	0	0	1	4	80
CLSTN3	0	genome.wustl.edu	37	12	7303159	7303159	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	7303159	7303159	G	A	SNP	CLSTN3	ENST00000266546	human	ensembl	74_37	+1	known	silent	c.2265	p.V755	1.000	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182				66	0	0	29	12	29.2683
GDF3	0	genome.wustl.edu	37	12	7842978	7842978	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	7842978	7842978	A	T	SNP	GDF3	ENST00000329913	human	ensembl	74_37	-1	known	missense	c.591	p.N197K	0.006	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF3	HGNC	ENSG00000184344				175	0	0	62	21	25.3012
MYF6	0	genome.wustl.edu	37	12	81102715	81102715	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	81102715	81102715	C	T	SNP	MYF6	ENST00000228641	human	ensembl	74_37	+1	known	silent	c.705	p.C235	0.990	NULL	pfam_Basic,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYF6	HGNC	ENSG00000111046				69	0	0	42	14	25
FAM155A	0	genome.wustl.edu	37	13	108518596	108518596	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	108518596	108518596	C	T	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	missense	c.349	p.A117T	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				19	0	0	8	9	52.9412
MCF2L	0	genome.wustl.edu	37	13	113740490	113740490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	113740490	113740490	C	T	SNP	MCF2L	ENST00000375604	human	ensembl	74_37	+1	known	missense	c.2471	p.A824V	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217				88	0	0	38	8	17.3913
ATP4B	0	genome.wustl.edu	37	13	114312428	114312428	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	114312428	114312428	C	T	SNP	ATP4B	ENST00000335288	human	ensembl	74_37	-1	known	missense	c.32	p.G11D	0.992	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	-	no_errors	ATP4B	HGNC	ENSG00000186009				36	0	0	12	4	25
TMEM255B	0	genome.wustl.edu	37	13	114504642	114504642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	114504642	114504642	G	A	SNP	TMEM255B	ENST00000375353	human	ensembl	74_37	+1	known	missense	c.526	p.A176T	0.007	NULL	NULL	-	no_errors	TMEM255B	HGNC	ENSG00000184497				55	0	0	18	9	33.3333
MICU2	0	genome.wustl.edu	37	13	22141028	22141028	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	22141028	22141028	C	T	SNP	MICU2	ENST00000382374	human	ensembl	74_37	-1	known	missense	c.266	p.R89H	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU2	HGNC	ENSG00000165487				48	0	0	14	8	36.3636
ATP12A	0	genome.wustl.edu	37	13	25265211	25265211	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	25265211	25265211	G	A	SNP	ATP12A	ENST00000218548	human	ensembl	74_37	+1	known	silent	c.909	p.T303	0.438	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP12A	HGNC	ENSG00000075673				172	0	0	47	27	36.4865
NUPL1	0	genome.wustl.edu	37	13	25882001	25882001	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	25882001	25882001	T	C	SNP	NUPL1	ENST00000381736	human	ensembl	74_37	+1	known	silent	c.165	p.T55	0.979	NULL	NULL	-	no_errors	NUPL1	HGNC	ENSG00000139496				160	0	0	71	23	24.4681
MTUS2	0	genome.wustl.edu	37	13	29855999	29855999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	29855999	29855999	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.2833	p.A945T	0.912	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				147	1	0.675676	47	21	30.8824
ENOX1	0	genome.wustl.edu	37	13	43930092	43930092	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	43930092	43930092	C	T	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	silent	c.786	p.S262	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658				434	0	0	126	46	26.7442
SLC25A30	0	genome.wustl.edu	37	13	45983139	45983139	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	45983139	45983139	C	A	SNP	SLC25A30	ENST00000519676	human	ensembl	74_37	-1	known	missense	c.135	p.K45N	0.981	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling,prints_Mit_carrier	-	no_errors	SLC25A30	HGNC	ENSG00000174032				153	0	0	73	6	7.59494
EBPL	0	genome.wustl.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	50235160	50235160	G	C	SNP	EBPL	ENST00000242827	human	ensembl	74_37	-1	known	missense	c.565	p.L189V	0.264	pfam_EBP	pfam_EBP	-	no_errors	EBPL	HGNC	ENSG00000123179				97	0	0	51	5	8.92857
PCDH8	0	genome.wustl.edu	37	13	53422116	53422116	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	53422116	53422116	C	T	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	silent	c.456	p.T152	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				59	0	0	29	6	17.1429
COMMD6	0	genome.wustl.edu	37	13	76111694	76111694	+	RNA	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	76111694	76111694	G	C	SNP	COMMD6	ENST00000471682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COMMD6	HGNC	ENSG00000188243				22	0	0	3	8	72.7273
SLITRK5	0	genome.wustl.edu	37	13	88330333	88330333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	88330333	88330333	G	A	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.2690	p.R897H	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				172	0	0	77	34	30.6306
SLC15A1	0	genome.wustl.edu	37	13	99338492	99338492	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	99338492	99338492	G	A	SNP	SLC15A1	ENST00000376503	human	ensembl	74_37	-1	known	silent	c.1887	p.G629	0.992	superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	-	no_errors	SLC15A1	HGNC	ENSG00000088386				59	0	0	18	2	10
HHIPL1	0	genome.wustl.edu	37	14	100119154	100119154	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	100119154	100119154	C	T	SNP	HHIPL1	ENST00000330710	human	ensembl	74_37	+1	known	silent	c.849	p.S283	0.990	superfamily_Quinoprot_gluc/sorb_DH	pfam_SRCR,pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Srcr_rcpt-rel,superfamily_Quinoprot_gluc/sorb_DH,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	HHIPL1	HGNC	ENSG00000182218				91	0	0	19	16	45.7143
MIR299	0	genome.wustl.edu	37	14	101490146	101490146	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	101490146	101490146	G	A	SNP	MIR299	ENST00000385016	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR299	HGNC	ENSG00000207749				91	0	0	29	25	46.2963
MIR487A	0	genome.wustl.edu	37	14	101518829	101518829	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	101518829	101518829	C	T	SNP	MIR487A	ENST00000384827	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR487A	HGNC	ENSG00000207558				57	0	0	30	9	23.0769
AHNAK2	0	genome.wustl.edu	37	14	105418203	105418203	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	105418203	105418203	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.3585	p.A1195	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				540	0	0	164	49	23.0047
TEP1	0	genome.wustl.edu	37	14	20842664	20842664	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	20842664	20842664	A	G	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.6395	p.L2132P	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				47	0	0	19	12	38.7097
METTL17	0	genome.wustl.edu	37	14	21464375	21464375	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	21464375	21464375	A	G	SNP	METTL17	ENST00000382985	human	ensembl	74_37	+1	known	missense	c.1004	p.H335R	1.000	pfam_Ribosomal_Rsm22_bac-type	pfam_Ribosomal_Rsm22_bac-type,pfam_Methyltransf_11	-	no_errors	METTL17	HGNC	ENSG00000165792				569	0	0	229	44	16.1172
SUPT16H	0	genome.wustl.edu	37	14	21833073	21833073	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	21833073	21833073	T	C	SNP	SUPT16H	ENST00000216297	human	ensembl	74_37	-1	known	silent	c.1146	p.G382	0.938	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201				106	0	0	49	12	19.6721
PRMT5	0	genome.wustl.edu	37	14	23392040	23392040	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	23392040	23392040	T	C	SNP	PRMT5	ENST00000324366	human	ensembl	74_37	-1	known	missense	c.1490	p.Q497R	1.000	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	pfam_Arg_MeTrfase,pirsf_Arg_MeTrfase_PRMT5	-	no_errors	PRMT5	HGNC	ENSG00000100462				56	0	0	13	11	45.8333
MYH6	0	genome.wustl.edu	37	14	23866189	23866189	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	23866189	23866189	G	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	silent	c.2151	p.Y717	0.983	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				128	0	0	35	10	22.2222
ENSG00000258727	0	genome.wustl.edu	37	14	24034752	24034752	+	RNA	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	24034752	24034752	G	C	SNP	ENSG00000258727	ENST00000555968	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-66N24.3	Clone_based_vega_gene	ENSG00000258727				27	0	0	15	8	34.7826
LRRC16B	0	genome.wustl.edu	37	14	24534215	24534215	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	24534215	24534215	G	A	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	silent	c.3129	p.P1043	0.973	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				330	0	0	73	42	36.5217
RNF31	0	genome.wustl.edu	37	14	24619997	24619997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	24619997	24619997	G	A	SNP	RNF31	ENST00000324103	human	ensembl	74_37	+1	known	missense	c.1388	p.R463Q	0.000	NULL	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like_dom,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098				162	1	0.613497	39	24	38.0952
CTSG	0	genome.wustl.edu	37	14	25042973	25042973	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	25042973	25042973	C	G	SNP	CTSG	ENST00000216336	human	ensembl	74_37	-1	known	missense	c.638	p.G213A	0.996	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CTSG	HGNC	ENSG00000100448				285	0	0	94	41	30.3704
MIA2	0	genome.wustl.edu	37	14	39722040	39722040	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	39722040	39722040	G	A	SNP	MIA2	ENST00000280082	human	ensembl	74_37	+1	novel	silent	c.1656	p.S552	0.024	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526				104	0	0	54	22	28.9474
LRFN5	0	genome.wustl.edu	37	14	42356114	42356114	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	42356114	42356114	G	A	SNP	LRFN5	ENST00000298119	human	ensembl	74_37	+1	known	missense	c.286	p.A96T	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN5	HGNC	ENSG00000165379				85	0	0	47	29	38.1579
SOS2	0	genome.wustl.edu	37	14	50616749	50616749	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	50616749	50616749	T	C	SNP	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	silent	c.2361	p.T787	0.879	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				223	1	0.446429	99	54	35.2941
BMP4	0	genome.wustl.edu	37	14	54417102	54417102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	54417102	54417102	C	T	SNP	BMP4	ENST00000245451	human	ensembl	74_37	-1	known	missense	c.875	p.R292H	0.996	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP4	HGNC	ENSG00000125378				69	0	0	35	13	27.0833
NAA30	0	genome.wustl.edu	37	14	57863536	57863536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	57863536	57863536	C	T	SNP	NAA30	ENST00000556492	human	ensembl	74_37	+1	known	missense	c.838	p.R280C	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA30	HGNC	ENSG00000139977				126	0	0	65	24	26.9663
PCNXL4	0	genome.wustl.edu	37	14	60582091	60582091	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	60582091	60582091	G	A	SNP	PCNXL4	ENST00000404681	human	ensembl	74_37	+1	known	silent	c.1269	p.P423	0.911	NULL	pfam_Pecanex	-	no_errors	PCNXL4	HGNC	ENSG00000126773				320	0	0	122	44	26.506
TRMT5	0	genome.wustl.edu	37	14	61446378	61446378	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	61446378	61446378	G	A	SNP	TRMT5	ENST00000261249	human	ensembl	74_37	-1	known	nonsense	c.238	p.R80*	1.000	NULL	pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TRMT5	HGNC	ENSG00000126814				285	0	0	181	50	21.645
SYT16	0	genome.wustl.edu	37	14	62567283	62567283	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	62567283	62567283	G	A	SNP	SYT16	ENST00000430451	human	ensembl	74_37	+1	novel	missense	c.1796	p.R599H	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT16	HGNC	ENSG00000139973				46	0	0	18	10	35.7143
SYNE2	0	genome.wustl.edu	37	14	64469920	64469920	+	Silent	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	64469920	64469920	T	G	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	silent	c.4269	p.T1423	0.001	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				92	0	0	65	27	29.3478
GPHN	0	genome.wustl.edu	37	14	67578617	67578617	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	67578617	67578617	C	T	SNP	GPHN	ENST00000478722	human	ensembl	74_37	+1	known	missense	c.1453	p.R485W	1.000	pfam_MoeA_linker/N,superfamily_MoeA_linker/N	pfam_Mopterin-bd_dom,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd_dom,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd_dom,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723				67	0	0	31	13	29.5455
PAPLN	0	genome.wustl.edu	37	14	73718836	73718836	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	73718836	73718836	G	A	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	silent	c.954	p.A318	0.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				23	0	0	7	5	41.6667
HEATR4	0	genome.wustl.edu	37	14	73989272	73989272	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	73989272	73989272	A	G	SNP	HEATR4	ENST00000334988	human	ensembl	74_37	-1	known	silent	c.585	p.P195	0.000	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105				57	0	0	32	7	17.9487
VRTN	0	genome.wustl.edu	37	14	74823805	74823805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	74823805	74823805	C	T	SNP	VRTN	ENST00000256362	human	ensembl	74_37	+1	known	missense	c.319	p.R107C	0.966	NULL	pfam_Transposase_8	-	no_errors	VRTN	HGNC	ENSG00000133980				41	0	0	23	7	23.3333
LTBP2	0	genome.wustl.edu	37	14	74978021	74978021	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	74978021	74978021	G	A	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	silent	c.2955	p.C985	0.999	pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				238	0	0	70	30	30
ALKBH1	0	genome.wustl.edu	37	14	78146294	78146294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	78146294	78146294	G	A	SNP	ALKBH1	ENST00000216489	human	ensembl	74_37	-1	known	missense	c.475	p.R159W	0.962	tigrfam_Alkb	tigrfam_Alkb	-	no_errors	ALKBH1	HGNC	ENSG00000100601				122	0	0	44	22	33.3333
STON2	0	genome.wustl.edu	37	14	81743821	81743821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	81743821	81743821	G	A	SNP	STON2	ENST00000267540	human	ensembl	74_37	-1	known	missense	c.1834	p.R612C	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022				132	0	0	34	17	33.3333
FOXN3	0	genome.wustl.edu	37	14	89628970	89628970	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	89628970	89628970	G	A	SNP	FOXN3	ENST00000261302	human	ensembl	74_37	-1	known	missense	c.1261	p.R421C	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254				192	0	0	48	17	26.1538
CCDC88C	0	genome.wustl.edu	37	14	91787575	91787575	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	91787575	91787575	A	G	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	silent	c.1416	p.N472	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				26	0	0	12	6	33.3333
ATXN3	0	genome.wustl.edu	37	14	92560113	92560113	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	92560113	92560113	A	G	SNP	ATXN3	ENST00000556374	human	ensembl	74_37	-1	known	missense	c.316	p.S106P	1.000	pfam_Josephin,pfscan_Josephin	pfam_Josephin,pfscan_Josephin,prints_Josephin	-	no_errors	ATXN3	HGNC	ENSG00000066427				171	0	0	58	33	36.2637
UNC79	0	genome.wustl.edu	37	14	94044213	94044213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	94044213	94044213	G	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.2237	p.R746Q	1.000	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				388	0	0	124	58	31.8681
BCL11B	0	genome.wustl.edu	37	14	99641438	99641438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	99641438	99641438	C	T	SNP	BCL11B	ENST00000357195	human	ensembl	74_37	-1	known	missense	c.1735	p.A579T	0.105	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11B	HGNC	ENSG00000127152				30	0	0	19	8	29.6296
TM2D3	0	genome.wustl.edu	37	15	102182749	102182749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	102182749	102182749	G	A	SNP	TM2D3	ENST00000333202	human	ensembl	74_37	-1	known	missense	c.677	p.T226M	1.000	pfam_TM2	pfam_TM2	-	no_errors	TM2D3	HGNC	ENSG00000184277				168	0	0	52	24	31.5789
HERC2P3	0	genome.wustl.edu	37	15	20645859	20645859	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	20645859	20645859	C	T	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				91	0	0	33	6	15.3846
HERC2P3	0	genome.wustl.edu	37	15	20649487	20649487	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	20649487	20649487	G	A	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				218	0	0	125	20	13.7931
HERC2P3	0	genome.wustl.edu	37	15	20651117	20651117	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	20651117	20651117	C	T	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				30	0	0	20	16	44.4444
ENSG00000259455	0	genome.wustl.edu	37	15	23412237	23412237	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	23412237	23412237	T	C	SNP	ENSG00000259455	ENST00000558241	human	ensembl	74_37	-1	novel	missense	c.220	p.T74A	0.001	NULL	superfamily_Ribosomal_L7/12_C/ClpS-like,prints_Tropomyosin	-	no_errors	RP11-467N20.5	Clone_based_vega_gene	ENSG00000259455				63	0	0	30	4	11.7647
GOLGA8S	0	genome.wustl.edu	37	15	23609584	23609584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	23609584	23609584	G	A	SNP	GOLGA8S	ENST00000562295	human	ensembl	74_37	+1	novel	missense	c.1442	p.C481Y	1.000	NULL	NULL	-	no_errors	GOLGA8S	HGNC	ENSG00000261739				131	0	0	42	14	25
MAGEL2	0	genome.wustl.edu	37	15	23890708	23890708	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	23890708	23890708	G	A	SNP	MAGEL2	ENST00000532292	human	ensembl	74_37	-1	known	missense	c.373	p.R125C	0.007	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585				52	0	0	10	8	44.4444
OCA2	0	genome.wustl.edu	37	15	28273201	28273201	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	28273201	28273201	G	A	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	missense	c.331	p.R111W	0.001	NULL	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				175	0	0	45	20	30.7692
OTUD7A	0	genome.wustl.edu	37	15	31822980	31822980	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	31822980	31822980	C	T	SNP	OTUD7A	ENST00000382902	human	ensembl	74_37	-1	known	silent	c.582	p.T194	0.016	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918				72	0	0	50	13	20.6349
OTUD7A	0	genome.wustl.edu	37	15	31823008	31823008	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	31823008	31823008	C	T	SNP	OTUD7A	ENST00000382902	human	ensembl	74_37	-1	known	missense	c.554	p.R185H	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918				51	0	0	33	9	21.4286
GJD2	0	genome.wustl.edu	37	15	35044979	35044979	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	35044979	35044979	G	A	SNP	GJD2	ENST00000290374	human	ensembl	74_37	-1	known	silent	c.666	p.G222	0.991	pfam_Connexin_CCC	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin36	-	no_errors	GJD2	HGNC	ENSG00000159248				78	0	0	35	17	32.6923
SPRED1	0	genome.wustl.edu	37	15	38643327	38643327	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	38643327	38643327	T	C	SNP	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	missense	c.797	p.M266T	1.000	NULL	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				129	0	0	61	27	30.6818
BUB1B	0	genome.wustl.edu	37	15	40468681	40468681	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	40468681	40468681	C	T	SNP	BUB1B	ENST00000412359	human	ensembl	74_37	+1	known	missense	c.430	p.R144C	0.864	pfam_Mad3_BUB1_I,smart_Mad3_BUB1_I	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970				84	0	0	51	14	21.5385
MGA	0	genome.wustl.edu	37	15	42032360	42032360	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	42032360	42032360	G	T	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	missense	c.4544	p.G1515V	1.000	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197				112	0	0	30	17	36.1702
SPTBN5	0	genome.wustl.edu	37	15	42167792	42167792	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	42167792	42167792	G	T	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	missense	c.4151	p.P1384H	0.014	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877				22	0	0	6	5	45.4545
LOC101928414	0	genome.wustl.edu	37	15	45557006	45557006	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	45557006	45557006	C	T	SNP	LOC101928414	ENST00000561404	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2651B20.3	Clone_based_vega_gene	ENSG00000259520				61	0	0	36	12	25
DMXL2	0	genome.wustl.edu	37	15	51766637	51766637	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	51766637	51766637	C	A	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.7117	p.A2373S	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				120	0	0	33	26	44.0678
ONECUT1	0	genome.wustl.edu	37	15	53049694	53049694	+	RNA	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	53049694	53049694	T	A	SNP	ONECUT1	ENST00000561401	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.067	-	-	-	no_errors	ONECUT1	HGNC	ENSG00000169856				103	0	0	37	17	31.4815
NOX5	0	genome.wustl.edu	37	15	69335034	69335034	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	69335034	69335034	C	A	SNP	NOX5	ENST00000525143	human	ensembl	74_37	+1	known	missense	c.803	p.A268D	0.904	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	NOX5	HGNC	ENSG00000255346				98	0	0	29	12	29.2683
MYO9A	0	genome.wustl.edu	37	15	72146864	72146864	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	72146864	72146864	C	T	SNP	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	missense	c.6413	p.R2138H	1.000	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933				147	1	0.675676	91	25	21.5517
PML	0	genome.wustl.edu	37	15	74325013	74325013	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	74325013	74325013	T	C	SNP	PML	ENST00000268058	human	ensembl	74_37	+1	known	missense	c.1355	p.V452A	0.299	pfam_DUF3583	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				79	0	0	28	12	30
ADAMTS7	0	genome.wustl.edu	37	15	79059752	79059752	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	79059752	79059752	G	A	SNP	ADAMTS7	ENST00000388820	human	ensembl	74_37	-1	known	missense	c.2828	p.P943L	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378				79	0	0	21	7	25
ADAMTS7	0	genome.wustl.edu	37	15	79089073	79089073	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	79089073	79089073	C	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	74_37	-1	known	silent	c.678	p.R226	0.001	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378				174	0	0	43	12	21.8182
ADAMTS7	0	genome.wustl.edu	37	15	79090417	79090417	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	79090417	79090417	A	G	SNP	ADAMTS7	ENST00000388820	human	ensembl	74_37	-1	known	silent	c.495	p.I165	0.847	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378				204	0	0	42	19	31.1475
ARNT2	0	genome.wustl.edu	37	15	80885987	80885987	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	80885987	80885987	A	G	SNP	ARNT2	ENST00000303329	human	ensembl	74_37	+1	known	missense	c.2102	p.Y701C	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT2	HGNC	ENSG00000172379				17	0	0	3	2	40
MESP2	0	genome.wustl.edu	37	15	90320225	90320225	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	90320225	90320225	G	A	SNP	MESP2	ENST00000341735	human	ensembl	74_37	+1	known	missense	c.637	p.A213T	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MESP2	HGNC	ENSG00000188095				21	0	0	7	3	30
GDPGP1	0	genome.wustl.edu	37	15	90785087	90785087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	90785087	90785087	G	A	SNP	GDPGP1	ENST00000329600	human	ensembl	74_37	+1	known	missense	c.947	p.R316Q	1.000	NULL	NULL	-	no_errors	GDPGP1	HGNC	ENSG00000183208				139	0	0	60	35	36.8421
ENSG00000228998	0	genome.wustl.edu	37	15	90818403	90818403	+	RNA	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	90818403	90818403	C	A	SNP	ENSG00000228998	ENST00000411845	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-697E2.7	Clone_based_vega_gene	ENSG00000228998				88	0	0	13	6	31.5789
IGF1R	0	genome.wustl.edu	37	15	99452112	99452112	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	99452112	99452112	C	T	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	silent	c.1446	p.N482	0.353	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443				50	0	0	16	5	23.8095
TNP2	0	genome.wustl.edu	37	16	11362819	11362819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	11362819	11362819	G	A	SNP	TNP2	ENST00000312693	human	ensembl	74_37	-1	known	missense	c.301	p.R101C	0.025	pfam_TP2	pfam_TP2	-	no_errors	TNP2	HGNC	ENSG00000178279				126	0	0	44	15	25.4237
CLCN7	0	genome.wustl.edu	37	16	1524892	1524892	+	Silent	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	1524892	1524892	C	G	SNP	CLCN7	ENST00000382745	human	ensembl	74_37	-1	known	silent	c.84	p.A28	0.126	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249				8	0	0	4	2	33.3333
TELO2	0	genome.wustl.edu	37	16	1556490	1556490	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	1556490	1556490	G	A	SNP	TELO2	ENST00000564507	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TELO2	HGNC	ENSG00000100726				16	0	0	8	7	46.6667
NOMO3	0	genome.wustl.edu	37	16	16364028	16364028	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	16364028	16364028	T	C	SNP	NOMO3	ENST00000399336	human	ensembl	74_37	+1	known	missense	c.1945	p.Y649H	1.000	NULL	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO3	HGNC	ENSG00000103226				62	0	0	15	20	57.1429
UMOD	0	genome.wustl.edu	37	16	20359631	20359631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	20359631	20359631	G	A	SNP	UMOD	ENST00000424589	human	ensembl	74_37	-1	known	missense	c.986	p.T329M	0.496	NULL	pfam_ZP_dom,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_ZP_dom,pfscan_EG-like_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMOD	HGNC	ENSG00000169344				260	2	0.763359	96	35	26.7176
PKD1	0	genome.wustl.edu	37	16	2140034	2140034	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	2140034	2140034	G	A	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	silent	c.12606	p.G4202	0.696	NULL	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				40	0	0	10	4	28.5714
CASKIN1	0	genome.wustl.edu	37	16	2229836	2229836	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	2229836	2229836	C	T	SNP	CASKIN1	ENST00000343516	human	ensembl	74_37	-1	known	missense	c.3533	p.R1178H	0.997	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971				39	0	0	3	3	50
POLR3E	0	genome.wustl.edu	37	16	22339833	22339833	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	22339833	22339833	T	C	SNP	POLR3E	ENST00000299853	human	ensembl	74_37	+1	known	silent	c.1869	p.F623	1.000	NULL	pfam_RNA_pol_III_Rpc5	-	no_errors	POLR3E	HGNC	ENSG00000058600				129	0	0	49	3	5.76923
MLST8	0	genome.wustl.edu	37	16	2256622	2256622	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	2256622	2256622	G	A	SNP	MLST8	ENST00000397124	human	ensembl	74_37	+1	known	silent	c.306	p.T102	0.973	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	MLST8	HGNC	ENSG00000167965				495	1	0.201613	99	33	25
E4F1	0	genome.wustl.edu	37	16	2282763	2282763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	2282763	2282763	G	A	SNP	E4F1	ENST00000301727	human	ensembl	74_37	+1	known	missense	c.737	p.R246H	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967				247	0	0	46	19	29.2308
ABCA17P	0	genome.wustl.edu	37	16	2436237	2436237	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	2436237	2436237	G	A	SNP	ABCA17P	ENST00000469908	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	ABCA17P	HGNC	ENSG00000238098				117	0	0	30	15	33.3333
RBBP6	0	genome.wustl.edu	37	16	24581781	24581781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	24581781	24581781	G	A	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	missense	c.3770	p.G1257E	0.966	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				124	0	0	38	12	24
CORO1A	0	genome.wustl.edu	37	16	30199821	30199821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	30199821	30199821	G	A	SNP	CORO1A	ENST00000219150	human	ensembl	74_37	+1	known	missense	c.1205	p.R402Q	1.000	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1A	HGNC	ENSG00000102879				101	0	0	24	10	29.4118
ZNF689	0	genome.wustl.edu	37	16	30616471	30616471	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	30616471	30616471	A	G	SNP	ZNF689	ENST00000287461	human	ensembl	74_37	-1	known	missense	c.617	p.V206A	0.720	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF689	HGNC	ENSG00000156853				158	0	0	58	16	21.6216
SETD1A	0	genome.wustl.edu	37	16	30991144	30991144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	30991144	30991144	C	T	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	missense	c.4037	p.A1346V	0.997	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				14	0	0	5	4	44.4444
ITGAD	0	genome.wustl.edu	37	16	31405644	31405644	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	31405644	31405644	T	C	SNP	ITGAD	ENST00000389202	human	ensembl	74_37	+1	known	missense	c.119	p.V40A	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886				88	0	0	33	7	17.5
PDIA2	0	genome.wustl.edu	37	16	335551	335551	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	335551	335551	C	T	SNP	PDIA2	ENST00000219406	human	ensembl	74_37	+1	known	silent	c.967	p.L323	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase	-	no_errors	PDIA2	HGNC	ENSG00000185615				241	0	0	30	15	33.3333
TRAP1	0	genome.wustl.edu	37	16	3724480	3724480	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	3724480	3724480	C	A	SNP	TRAP1	ENST00000246957	human	ensembl	74_37	-1	known	missense	c.904	p.D302Y	1.000	pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90_fam	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602				66	0	0	31	2	6.06061
N4BP1	0	genome.wustl.edu	37	16	48595876	48595876	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	48595876	48595876	A	G	SNP	N4BP1	ENST00000262384	human	ensembl	74_37	-1	known	silent	c.678	p.S226	0.002	NULL	pfam_RNase_Zc3h12	-	no_errors	N4BP1	HGNC	ENSG00000102921				112	0	0	45	13	22.4138
SALL1	0	genome.wustl.edu	37	16	51173150	51173150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	51173150	51173150	G	A	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.2983	p.R995W	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				135	0	0	55	32	36.7816
RBL2	0	genome.wustl.edu	37	16	53524074	53524074	+	Silent	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	53524074	53524074	A	C	SNP	RBL2	ENST00000262133	human	ensembl	74_37	+1	known	silent	c.3282	p.T1094	0.999	NULL	pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL2	HGNC	ENSG00000103479				101	0	0	44	22	33.3333
CES1P1	0	genome.wustl.edu	37	16	55807419	55807419	+	RNA	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	55807419	55807419	C	A	SNP	CES1P1	ENST00000571348	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.046	-	-	-	no_errors	CES1P1	HGNC	ENSG00000228695				18	0	0	14	6	30
RSPRY1	0	genome.wustl.edu	37	16	57269043	57269043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	57269043	57269043	C	T	SNP	RSPRY1	ENST00000394420	human	ensembl	74_37	+1	known	missense	c.1537	p.R513C	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RSPRY1	HGNC	ENSG00000159579				70	0	0	27	12	30.7692
GPR97	0	genome.wustl.edu	37	16	57719834	57719834	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	57719834	57719834	G	A	SNP	GPR97	ENST00000333493	human	ensembl	74_37	+1	known	silent	c.1536	p.L512	0.615	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR97	HGNC	ENSG00000182885				206	0	0	56	31	35.6322
PRSS54	0	genome.wustl.edu	37	16	58324946	58324946	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	58324946	58324946	C	A	SNP	PRSS54	ENST00000219301	human	ensembl	74_37	-1	known	missense	c.180	p.Q60H	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	-	no_errors	PRSS54	HGNC	ENSG00000103023				147	0	0	32	17	34.6939
SETD6	0	genome.wustl.edu	37	16	58549965	58549965	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	58549965	58549965	C	T	SNP	SETD6	ENST00000219315	human	ensembl	74_37	+1	known	nonsense	c.298	p.Q100*	0.989	pfam_SET_dom,pirsf_RuBisCo-cyt_methylase	pfam_SET_dom,pfam_Rubisco_LSMT_subst-bd,superfamily_Rubisco_LSMT_subst-bd,pirsf_RuBisCo-cyt_methylase	-	no_errors	SETD6	HGNC	ENSG00000103037				11	0	0	1	3	75
CDH8	0	genome.wustl.edu	37	16	61851566	61851566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	61851566	61851566	C	T	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	missense	c.1094	p.R365H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				99	0	0	56	23	29.1139
KIAA0895L	0	genome.wustl.edu	37	16	67214240	67214240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	67214240	67214240	G	A	SNP	KIAA0895L	ENST00000290881	human	ensembl	74_37	-1	known	missense	c.274	p.R92W	0.002	NULL	pfam_DUF1704	-	no_errors	KIAA0895L	HGNC	ENSG00000196123				54	0	0	18	9	33.3333
PLEKHG4	0	genome.wustl.edu	37	16	67321888	67321888	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	67321888	67321888	G	A	SNP	PLEKHG4	ENST00000360461	human	ensembl	74_37	+1	known	missense	c.3191	p.R1064H	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4	HGNC	ENSG00000196155				175	0	0	60	16	21.0526
SLC12A4	0	genome.wustl.edu	37	16	67984960	67984960	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	67984960	67984960	A	G	SNP	SLC12A4	ENST00000422611	human	ensembl	74_37	-1	known	missense	c.1307	p.I436T	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067				204	0	0	49	19	27.9412
PLA2G15	0	genome.wustl.edu	37	16	68289850	68289850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	68289850	68289850	G	A	SNP	PLA2G15	ENST00000566188	human	ensembl	74_37	+1	novel	missense	c.559	p.A187T	0.162	NULL	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066				65	0	0	21	7	25
CDH3	0	genome.wustl.edu	37	16	68716319	68716319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	68716319	68716319	G	A	SNP	CDH3	ENST00000264012	human	ensembl	74_37	+1	known	missense	c.1111	p.G371S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038				113	0	0	28	12	30
SF3B3	0	genome.wustl.edu	37	16	70563083	70563083	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	70563083	70563083	A	G	SNP	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	silent	c.378	p.K126	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				147	0	0	69	21	23.3333
RHBDL1	0	genome.wustl.edu	37	16	726836	726836	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	726836	726836	C	T	SNP	RHBDL1	ENST00000219551	human	ensembl	74_37	+1	known	silent	c.561	p.Y187	1.000	pirsf_Peptidase_S54_rhomboid_met	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met	-	no_errors	RHBDL1	HGNC	ENSG00000103269				276	0	0	55	28	33.7349
WDR24	0	genome.wustl.edu	37	16	737628	737628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	737628	737628	C	T	SNP	WDR24	ENST00000248142	human	ensembl	74_37	-1	known	missense	c.983	p.R328Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580				83	0	0	16	9	36
LDHD	0	genome.wustl.edu	37	16	75146546	75146546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	75146546	75146546	C	T	SNP	LDHD	ENST00000300051	human	ensembl	74_37	-1	known	missense	c.1312	p.A438T	0.000	pfam_FAD-linked_oxidase_C,superfamily_FAD-linked_Oxase-like_C	pfam_FAD-linked_oxidase_C,pfam_Oxid_FAD_bind_N,superfamily_FAD-linked_Oxase-like_C,superfamily_FAD-bd_2	-	no_errors	LDHD	HGNC	ENSG00000166816				92	0	0	17	11	39.2857
KCNG4	0	genome.wustl.edu	37	16	84256426	84256426	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	84256426	84256426	G	A	SNP	KCNG4	ENST00000308251	human	ensembl	74_37	-1	known	silent	c.957	p.D319	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418				39	0	0	15	5	25
COTL1	0	genome.wustl.edu	37	16	84600458	84600458	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	84600458	84600458	G	A	SNP	COTL1	ENST00000262428	human	ensembl	74_37	-1	known	missense	c.422	p.T141M	0.993	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	COTL1	HGNC	ENSG00000103187				96	0	0	30	15	33.3333
KIAA0513	0	genome.wustl.edu	37	16	85111120	85111120	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	85111120	85111120	G	A	SNP	KIAA0513	ENST00000258180	human	ensembl	74_37	+1	known	missense	c.664	p.E222K	0.988	NULL	pfam_SBF2	-	no_errors	KIAA0513	HGNC	ENSG00000135709				104	1	0.952381	27	15	35.7143
FOXL1	0	genome.wustl.edu	37	16	86612522	86612522	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	86612522	86612522	G	A	SNP	FOXL1	ENST00000320241	human	ensembl	74_37	+1	known	missense	c.193	p.A65T	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXL1	HGNC	ENSG00000176678				218	0	0	60	29	32.5843
FOXL1	0	genome.wustl.edu	37	16	86613223	86613223	+	Silent	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	86613223	86613223	G	T	SNP	FOXL1	ENST00000320241	human	ensembl	74_37	+1	known	silent	c.894	p.L298	0.962	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXL1	HGNC	ENSG00000176678				77	0	0	19	3	13.6364
KLHDC4	0	genome.wustl.edu	37	16	87742975	87742975	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	87742975	87742975	C	G	SNP	KLHDC4	ENST00000270583	human	ensembl	74_37	-1	known	missense	c.1343	p.G448A	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	KLHDC4	HGNC	ENSG00000104731				281	0	0	69	11	13.75
USP7	0	genome.wustl.edu	37	16	8988969	8988969	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	8988969	8988969	A	G	SNP	USP7	ENST00000344836	human	ensembl	74_37	-1	known	silent	c.2958	p.N986	0.000	NULL	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555				486	0	0	146	79	35.1111
TUBB3	0	genome.wustl.edu	37	16	90002028	90002028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	90002028	90002028	G	A	SNP	TUBB3	ENST00000315491	human	ensembl	74_37	+1	known	missense	c.1169	p.R390Q	1.000	superfamily_Tub_FtsZ_C,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB3	Uniprot_gn	ENSG00000258947				433	1	0.230415	145	40	21.6216
C16orf72	0	genome.wustl.edu	37	16	9210617	9210617	+	Silent	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	9210617	9210617	A	C	SNP	C16orf72	ENST00000327827	human	ensembl	74_37	+1	known	silent	c.676	p.R226	1.000	NULL	NULL	-	no_errors	C16orf72	HGNC	ENSG00000182831				231	0	0	92	51	35.6643
MYH13	0	genome.wustl.edu	37	17	10214522	10214522	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	10214522	10214522	C	T	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	silent	c.4554	p.E1518	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				100	0	0	48	8	14.2857
MYH13	0	genome.wustl.edu	37	17	10222453	10222453	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	10222453	10222453	G	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.3392	p.T1131M	0.842	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				158	0	0	54	28	34.1463
MYOCD	0	genome.wustl.edu	37	17	12656201	12656201	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	12656201	12656201	C	T	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	silent	c.1596	p.T532	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				55	0	0	33	8	19.5122
ELAC2	0	genome.wustl.edu	37	17	12896212	12896212	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	12896212	12896212	C	T	SNP	ELAC2	ENST00000338034	human	ensembl	74_37	-1	known	missense	c.2404	p.G802S	0.000	NULL	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744				127	0	0	41	17	29.3103
PRPF8	0	genome.wustl.edu	37	17	1582418	1582418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	1582418	1582418	G	A	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	missense	c.1492	p.R498C	1.000	pfam_PROCN	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231				271	0	0	67	31	31.6327
PRPF8	0	genome.wustl.edu	37	17	1585245	1585245	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	1585245	1585245	C	T	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	silent	c.522	p.P174	0.027	pfam_PRO8NT	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231				195	0	0	51	25	32.8947
MPRIP	0	genome.wustl.edu	37	17	17030057	17030057	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	17030057	17030057	C	T	SNP	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	silent	c.309	p.C103	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_Ferritin-like_SF,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030				169	0	0	34	19	35.8491
MPRIP	0	genome.wustl.edu	37	17	17062029	17062029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	17062029	17062029	C	T	SNP	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	missense	c.1759	p.R587W	0.101	NULL	pfam_Pleckstrin_homology,superfamily_Ferritin-like_SF,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030				65	0	0	17	6	26.087
LOC440416	0	genome.wustl.edu	37	17	20805968	20805968	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	20805968	20805968	C	T	SNP	LOC440416	ENST00000577537	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-344E13.3	Clone_based_vega_gene	ENSG00000233098				35	0	0	15	3	16.6667
TMEM11	0	genome.wustl.edu	37	17	21101952	21101952	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	21101952	21101952	C	T	SNP	TMEM11	ENST00000317635	human	ensembl	74_37	-1	known	silent	c.264	p.A88	0.885	NULL	NULL	-	no_errors	TMEM11	HGNC	ENSG00000178307				110	1	0.900901	49	5	9.25926
KCNJ12	0	genome.wustl.edu	37	17	21318787	21318787	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	21318787	21318787	C	T	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	missense	c.133	p.R45C	1.000	pfam_K_chnl_inward-rec_Kir_N,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185				144	0	0	45	6	11.7647
TBC1D3P5	0	genome.wustl.edu	37	17	25750970	25750970	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	25750970	25750970	G	A	SNP	TBC1D3P5	ENST00000586223	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TBC1D3P5	HGNC	ENSG00000266433				94	0	0	31	3	8.82353
TAOK1	0	genome.wustl.edu	37	17	27857552	27857552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	27857552	27857552	G	A	SNP	TAOK1	ENST00000261716	human	ensembl	74_37	+1	known	missense	c.2276	p.R759Q	1.000	superfamily_Kinase-like_dom,superfamily_Homeodomain-like	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551				190	0	0	57	22	27.8481
OMG	0	genome.wustl.edu	37	17	29622153	29622153	+	Silent	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	29622153	29622153	G	T	SNP	OMG	ENST00000247271	human	ensembl	74_37	-1	known	silent	c.1197	p.T399	0.999	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OMG	HGNC	ENSG00000126861				403	0	0	209	74	26.1484
OR3A1	0	genome.wustl.edu	37	17	3195643	3195643	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	3195643	3195643	G	A	SNP	OR3A1	ENST00000323404	human	ensembl	74_37	-1	known	silent	c.234	p.S78	0.009	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR3A1	HGNC	ENSG00000180090				99	0	0	54	26	32.5
ZNF830	0	genome.wustl.edu	37	17	33289068	33289068	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	33289068	33289068	T	G	SNP	ZNF830	ENST00000361952	human	ensembl	74_37	+1	known	missense	c.483	p.D161E	1.000	NULL	smart_Znf_U1	-	no_errors	ZNF830	HGNC	ENSG00000198783				135	0	0	50	7	12.2807
ZNF830	0	genome.wustl.edu	37	17	33289083	33289083	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	33289083	33289083	A	G	SNP	ZNF830	ENST00000361952	human	ensembl	74_37	+1	known	silent	c.498	p.E166	0.094	NULL	smart_Znf_U1	-	no_errors	ZNF830	HGNC	ENSG00000198783				113	0	0	45	5	10
TAF15	0	genome.wustl.edu	37	17	34171552	34171552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	34171552	34171552	G	A	SNP	TAF15	ENST00000588240	human	ensembl	74_37	+1	known	missense	c.1249	p.G417S	1.000	NULL	pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	TAF15	HGNC	ENSG00000172660				131	0	0	86	5	5.49451
PNMT	0	genome.wustl.edu	37	17	37826013	37826013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	37826013	37826013	C	T	SNP	PNMT	ENST00000269582	human	ensembl	74_37	+1	known	missense	c.334	p.R112C	0.981	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	PNMT	HGNC	ENSG00000141744				128	1	0.775194	30	15	33.3333
THRA	0	genome.wustl.edu	37	17	38244713	38244713	+	Silent	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	38244713	38244713	G	T	SNP	THRA	ENST00000264637	human	ensembl	74_37	+1	known	silent	c.942	p.T314	0.936	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351				324	0	0	97	31	24.2188
KRT33A	0	genome.wustl.edu	37	17	39503321	39503321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	39503321	39503321	C	T	SNP	KRT33A	ENST00000007735	human	ensembl	74_37	-1	known	missense	c.742	p.A248T	0.672	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT33A	HGNC	ENSG00000006059				102	0	0	40	12	23.0769
KRT33B	0	genome.wustl.edu	37	17	39520144	39520144	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	39520144	39520144	T	G	SNP	KRT33B	ENST00000251646	human	ensembl	74_37	-1	known	missense	c.1159	p.T387P	0.687	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT33B	HGNC	ENSG00000131738				152	0	0	39	20	33.8983
DHX58	0	genome.wustl.edu	37	17	40256795	40256795	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	40256795	40256795	A	G	SNP	DHX58	ENST00000251642	human	ensembl	74_37	-1	known	missense	c.1552	p.Y518H	1.000	NULL	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX58	HGNC	ENSG00000108771				83	0	0	34	6	15
PLEKHH3	0	genome.wustl.edu	37	17	40825735	40825735	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	40825735	40825735	G	A	SNP	PLEKHH3	ENST00000591022	human	ensembl	74_37	-1	known	missense	c.416	p.A139V	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_MyTH4_dom,pfam_FERM_central,pfam_Ras-assoc,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH3	HGNC	ENSG00000068137				66	0	0	13	9	40.9091
BRCA1	0	genome.wustl.edu	37	17	41245719	41245719	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	41245719	41245719	C	A	SNP	BRCA1	ENST00000471181	human	ensembl	74_37	-1	known	missense	c.1829	p.R610M	0.993	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,prints_BRCA1,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048				178	0	0	60	29	32.5843
RUNDC3A	0	genome.wustl.edu	37	17	42390848	42390848	+	Silent	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	42390848	42390848	T	G	SNP	RUNDC3A	ENST00000426726	human	ensembl	74_37	+1	known	silent	c.435	p.A145	0.995	pfam_Run,smart_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3A	HGNC	ENSG00000108309				90	0	0	37	4	9.7561
KIF18B	0	genome.wustl.edu	37	17	43008980	43008980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	43008980	43008980	G	A	SNP	KIF18B	ENST00000339151	human	ensembl	74_37	-1	known	missense	c.1543	p.R515C	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18B	HGNC	ENSG00000186185				176	0	0	68	24	26.087
MAP3K14	0	genome.wustl.edu	37	17	43364390	43364390	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	43364390	43364390	C	T	SNP	MAP3K14	ENST00000344686	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAP3K14	HGNC	ENSG00000006062				66	0	0	14	9	39.1304
SMTNL2	0	genome.wustl.edu	37	17	4510711	4510711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	4510711	4510711	C	T	SNP	SMTNL2	ENST00000389313	human	ensembl	74_37	+1	known	missense	c.1315	p.R439C	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTNL2	HGNC	ENSG00000188176				473	1	0.21097	111	50	31.0559
NFE2L1	0	genome.wustl.edu	37	17	46135782	46135782	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	46135782	46135782	G	A	SNP	NFE2L1	ENST00000362042	human	ensembl	74_37	+1	known	silent	c.1098	p.A366	0.003	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641				237	0	0	69	24	25.8065
VPS53	0	genome.wustl.edu	37	17	465886	465886	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	465886	465886	G	A	SNP	VPS53	ENST00000437048	human	ensembl	74_37	-1	known	silent	c.1413	p.C471	0.991	NULL	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252				162	0	0	54	16	22.8571
HOXB1	0	genome.wustl.edu	37	17	46607743	46607743	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	46607743	46607743	G	T	SNP	HOXB1	ENST00000239174	human	ensembl	74_37	-1	known	missense	c.524	p.P175H	0.932	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB1	HGNC	ENSG00000120094				73	0	0	22	6	21.4286
HOXB3	0	genome.wustl.edu	37	17	46628518	46628518	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	46628518	46628518	A	G	SNP	HOXB3	ENST00000311626	human	ensembl	74_37	-1	known	silent	c.474	p.G158	0.576	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093				66	0	0	10	6	37.5
HOXB3	0	genome.wustl.edu	37	17	46628524	46628524	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	46628524	46628524	G	A	SNP	HOXB3	ENST00000311626	human	ensembl	74_37	-1	known	silent	c.468	p.G156	0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093				73	0	0	10	6	37.5
HOXB3	0	genome.wustl.edu	37	17	46629516	46629516	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	46629516	46629516	G	A	SNP	HOXB3	ENST00000311626	human	ensembl	74_37	-1	known	silent	c.321	p.G107	0.272	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093				463	0	0	110	58	34.5238
HOXB13	0	genome.wustl.edu	37	17	46804349	46804349	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	46804349	46804349	G	A	SNP	HOXB13	ENST00000290295	human	ensembl	74_37	-1	known	missense	c.658	p.R220C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_HoxA13_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXB13	HGNC	ENSG00000159184				222	0	0	48	36	42.8571
PPP1R9B	0	genome.wustl.edu	37	17	48212586	48212586	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	48212586	48212586	C	T	SNP	PPP1R9B	ENST00000501501	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PPP1R9B	HGNC	ENSG00000108819				29	0	0	1	3	75
XYLT2	0	genome.wustl.edu	37	17	48433258	48433258	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	48433258	48433258	T	C	SNP	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	missense	c.1205	p.F402S	0.999	pfam_Glyco_trans_14	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				113	0	0	31	10	24.3902
CACNA1G	0	genome.wustl.edu	37	17	48653598	48653598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	48653598	48653598	C	T	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.1835	p.A612V	0.421	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				21	0	0	6	6	50
USP6	0	genome.wustl.edu	37	17	5041527	5041527	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	5041527	5041527	C	T	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	missense	c.1037	p.T346M	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				420	0	0	116	56	32.5581
CUEDC1	0	genome.wustl.edu	37	17	55945510	55945510	+	Splice_Site	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	55945510	55945510	C	T	SNP	CUEDC1	ENST00000360238	human	ensembl	74_37	-1	known	splice_site	c.1034+1	e7+1	1.000	-	-	-	no_errors	CUEDC1	HGNC	ENSG00000180891				110	0	0	28	13	31.7073
SMG8	0	genome.wustl.edu	37	17	57290673	57290673	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	57290673	57290673	C	T	SNP	SMG8	ENST00000300917	human	ensembl	74_37	+1	known	missense	c.2489	p.A830V	1.000	pfam_Smg8/Smg9	pfam_Smg8/Smg9	-	no_errors	SMG8	HGNC	ENSG00000167447				321	0	0	99	44	30.7692
PPM1D	0	genome.wustl.edu	37	17	58740617	58740617	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	58740617	58740617	A	G	SNP	PPM1D	ENST00000305921	human	ensembl	74_37	+1	known	missense	c.1522	p.M508V	0.147	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1D	HGNC	ENSG00000170836				186	1	0.534759	72	30	29.4118
MED13	0	genome.wustl.edu	37	17	60032891	60032891	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	60032891	60032891	C	T	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	silent	c.5820	p.T1940	0.995	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				175	0	0	80	39	32.7731
CEP95	0	genome.wustl.edu	37	17	62532743	62532743	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	62532743	62532743	A	C	SNP	CEP95	ENST00000556440	human	ensembl	74_37	+1	known	missense	c.2094	p.E698D	1.000	NULL	superfamily_CH-domain	-	no_errors	CEP95	HGNC	ENSG00000258890				119	0	0	41	19	31.6667
CACNG5	0	genome.wustl.edu	37	17	64873462	64873462	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	64873462	64873462	C	T	SNP	CACNG5	ENST00000169565	human	ensembl	74_37	+1	known	silent	c.12	p.C4	0.679	prints_VDCC_g5su	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g5su	-	no_errors	CACNG5	HGNC	ENSG00000075429				151	0	0	40	25	38.4615
PRKAR1A	0	genome.wustl.edu	37	17	66511682	66511682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	66511682	66511682	G	A	SNP	PRKAR1A	ENST00000358598	human	ensembl	74_37	+1	known	missense	c.142	p.A48T	1.000	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,pirsf_cAMP_dep_PK_reg_su	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1A	HGNC	ENSG00000108946				61	0	0	23	13	36.1111
ABCA9	0	genome.wustl.edu	37	17	66980295	66980295	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	66980295	66980295	A	G	SNP	ABCA9	ENST00000370732	human	ensembl	74_37	-1	known	nonstop	c.4306	p.*1436Q	0.112	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				114	0	0	41	22	34.9206
GRIN2C	0	genome.wustl.edu	37	17	72851041	72851041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	72851041	72851041	G	A	SNP	GRIN2C	ENST00000293190	human	ensembl	74_37	-1	known	missense	c.191	p.P64L	0.998	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509				102	0	0	22	8	26.6667
FDXR	0	genome.wustl.edu	37	17	72859231	72859231	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	72859231	72859231	A	G	SNP	FDXR	ENST00000581530	human	ensembl	74_37	-1	known	missense	c.1330	p.Y444H	0.955	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	FDXR	HGNC	ENSG00000161513				66	0	0	14	8	36.3636
NLGN2	0	genome.wustl.edu	37	17	7317671	7317671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	7317671	7317671	G	A	SNP	NLGN2	ENST00000302926	human	ensembl	74_37	+1	known	missense	c.517	p.D173N	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992				91	0	0	19	8	29.6296
SRP68	0	genome.wustl.edu	37	17	74035773	74035773	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	74035773	74035773	G	A	SNP	SRP68	ENST00000542536	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SRP68	HGNC	ENSG00000167881				64	0	0	19	14	42.4242
UBE2O	0	genome.wustl.edu	37	17	74394635	74394635	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	74394635	74394635	C	A	SNP	UBE2O	ENST00000319380	human	ensembl	74_37	-1	known	missense	c.1814	p.G605V	1.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931				105	0	0	49	17	25.7576
TP53	0	genome.wustl.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				79	0	0	17	4	19.0476
TP53	0	genome.wustl.edu	37	17	7574018	7574018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	7574018	7574018	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.1009	p.R337C	0.692	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				79	0	0	14	8	36.3636
DNAH2	0	genome.wustl.edu	37	17	7661896	7661896	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	7661896	7661896	T	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.2135	p.L712H	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				225	0	0	75	31	29.2453
RNF213	0	genome.wustl.edu	37	17	78319303	78319303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	78319303	78319303	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.7168	p.D2390N	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				145	0	0	61	18	22.7848
NPLOC4	0	genome.wustl.edu	37	17	79539094	79539094	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	79539094	79539094	G	C	SNP	NPLOC4	ENST00000374747	human	ensembl	74_37	-1	known	missense	c.1302	p.N434K	0.976	pfam_NPL4,pirsf_PolyUb_recognition_cplx_Npl4	pfam_NPL4,pfam_NPL4_Zn-bd_put,pfam_Npl4_Ub-like_dom,pirsf_PolyUb_recognition_cplx_Npl4	-	no_errors	NPLOC4	HGNC	ENSG00000182446				34	0	0	13	5	27.7778
NTN1	0	genome.wustl.edu	37	17	8926196	8926196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	8926196	8926196	G	A	SNP	NTN1	ENST00000173229	human	ensembl	74_37	+1	known	missense	c.506	p.R169H	1.000	pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_Netrin_module_non-TIMP,pfam_EGF_laminin,superfamily_TIMP-like_OB-fold,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN1	HGNC	ENSG00000065320				49	0	0	12	8	40
ABR	0	genome.wustl.edu	37	17	959308	959308	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	959308	959308	C	T	SNP	ABR	ENST00000302538	human	ensembl	74_37	-1	known	missense	c.1528	p.V510I	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842				150	0	0	38	17	30.9091
ABR	0	genome.wustl.edu	37	17	973307	973307	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	973307	973307	G	A	SNP	ABR	ENST00000302538	human	ensembl	74_37	-1	known	silent	c.918	p.G306	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842				113	0	0	20	9	31.0345
GLP2R	0	genome.wustl.edu	37	17	9792953	9792953	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	9792953	9792953	C	T	SNP	GLP2R	ENST00000262441	human	ensembl	74_37	+1	known	silent	c.1593	p.S531	0.018	NULL	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GLP2R	HGNC	ENSG00000065325				32	0	0	10	8	44.4444
TUBB6	0	genome.wustl.edu	37	18	12325590	12325590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	12325590	12325590	C	T	SNP	TUBB6	ENST00000317702	human	ensembl	74_37	+1	known	missense	c.802	p.P268S	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB6	HGNC	ENSG00000176014				132	0	0	59	9	13.2353
PSMA8	0	genome.wustl.edu	37	18	23772332	23772332	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	23772332	23772332	A	G	SNP	PSMA8	ENST00000308268	human	ensembl	74_37	+1	known	missense	c.728	p.E243G	1.000	NULL	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA8	HGNC	ENSG00000154611				62	0	0	35	7	16.6667
MEP1B	0	genome.wustl.edu	37	18	29788119	29788119	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	29788119	29788119	A	G	SNP	MEP1B	ENST00000269202	human	ensembl	74_37	+1	known	silent	c.804	p.E268	0.996	pirsf_Pept_M12A_Meprin,pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MAM_dom,pfam_MATH,superfamily_TRAF-like,superfamily_ConA-like_lec_gl_sf,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1B	HGNC	ENSG00000141434				391	0	0	131	57	30.3191
ASXL3	0	genome.wustl.edu	37	18	31325872	31325872	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	31325872	31325872	A	G	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	silent	c.6060	p.P2020	0.024	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				34	0	0	13	6	31.5789
ELP2	0	genome.wustl.edu	37	18	33744530	33744530	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	33744530	33744530	G	A	SNP	ELP2	ENST00000358232	human	ensembl	74_37	+1	known	silent	c.1854	p.T618	0.747	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759				162	0	0	89	34	27.6423
FHOD3	0	genome.wustl.edu	37	18	34349306	34349306	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	34349306	34349306	G	A	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.4154	p.R1385H	1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				97	0	0	45	29	39.1892
SETBP1	0	genome.wustl.edu	37	18	42532660	42532660	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	42532660	42532660	G	T	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	nonsense	c.3355	p.G1119*	0.944	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				133	0	0	53	20	27.3973
ZBTB7C	0	genome.wustl.edu	37	18	45567019	45567019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	45567019	45567019	C	T	SNP	ZBTB7C	ENST00000332053	human	ensembl	74_37	-1	known	missense	c.460	p.E154K	0.993	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828				83	0	0	33	12	26.6667
MYO5B	0	genome.wustl.edu	37	18	47431168	47431168	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	47431168	47431168	C	T	SNP	MYO5B	ENST00000285039	human	ensembl	74_37	-1	known	silent	c.2445	p.A815	0.001	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306				84	0	0	32	5	13.5135
CXXC1	0	genome.wustl.edu	37	18	47809075	47809075	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	47809075	47809075	C	A	SNP	CXXC1	ENST00000412036	human	ensembl	74_37	-1	known	missense	c.1871	p.R624L	1.000	pfam_CpG-bd_C	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832				120	0	0	25	14	35.8974
RAX	0	genome.wustl.edu	37	18	56939817	56939817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	56939817	56939817	C	T	SNP	RAX	ENST00000334889	human	ensembl	74_37	-1	known	missense	c.319	p.G107R	0.818	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	RAX	HGNC	ENSG00000134438				124	0	0	30	19	38.7755
SERPINB3	0	genome.wustl.edu	37	18	61322973	61322973	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	61322973	61322973	T	C	SNP	SERPINB3	ENST00000283752	human	ensembl	74_37	-1	known	missense	c.1091	p.H364R	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB3	HGNC	ENSG00000057149				235	0	0	97	45	31.6901
SERPINB3	0	genome.wustl.edu	37	18	61323041	61323041	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	61323041	61323041	T	C	SNP	SERPINB3	ENST00000283752	human	ensembl	74_37	-1	known	silent	c.1023	p.A341	0.291	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB3	HGNC	ENSG00000057149				199	0	0	78	20	20.4082
SERPINB3	0	genome.wustl.edu	37	18	61323053	61323053	+	Silent	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	61323053	61323053	T	A	SNP	SERPINB3	ENST00000283752	human	ensembl	74_37	-1	known	silent	c.1011	p.T337	0.003	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB3	HGNC	ENSG00000057149				183	0	0	75	23	23.4694
SERPINB3	0	genome.wustl.edu	37	18	61323056	61323056	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	61323056	61323056	A	G	SNP	SERPINB3	ENST00000283752	human	ensembl	74_37	-1	known	silent	c.1008	p.V336	0.006	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB3	HGNC	ENSG00000057149				177	0	0	77	24	23.7624
CDH7	0	genome.wustl.edu	37	18	63530140	63530140	+	Silent	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	63530140	63530140	C	G	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	silent	c.1851	p.V617	0.735	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				61	0	0	33	14	29.7872
RTTN	0	genome.wustl.edu	37	18	67715346	67715346	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	67715346	67715346	A	C	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.5402	p.L1801R	0.927	NULL	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				111	0	0	48	13	21.3115
ENOSF1	0	genome.wustl.edu	37	18	683287	683287	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	683287	683287	T	A	SNP	ENOSF1	ENST00000340116	human	ensembl	74_37	-1	known	missense	c.898	p.T300S	0.998	pfam_Mandelate_racemase_C,smart_Mandelate_racemase_C	pfam_Mandelate_racemase_C,pfam_Mandelate_racemase_N,smart_Mandelate_racemase_C	-	no_errors	ENOSF1	HGNC	ENSG00000132199				236	0	0	77	37	32.4561
LAMA1	0	genome.wustl.edu	37	18	6959369	6959369	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	6959369	6959369	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.7749	p.A2583	0.001	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				208	0	0	81	30	27.027
SALL3	0	genome.wustl.edu	37	18	76753340	76753340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	76753340	76753340	G	A	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.1349	p.C450Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				49	0	0	9	4	30.7692
SALL3	0	genome.wustl.edu	37	18	76754516	76754516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	76754516	76754516	C	T	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.2525	p.A842V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				118	0	0	25	14	35.8974
ATP9B	0	genome.wustl.edu	37	18	77096644	77096644	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	77096644	77096644	G	C	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	missense	c.2045	p.R682P	0.832	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				70	0	0	7	17	70.8333
KCNG2	0	genome.wustl.edu	37	18	77659548	77659548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	77659548	77659548	G	A	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	missense	c.1133	p.R378H	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				124	0	0	35	4	10.2564
KCNG2	0	genome.wustl.edu	37	18	77659577	77659577	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	77659577	77659577	A	G	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	missense	c.1162	p.S388G	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				138	0	0	34	10	22.7273
CDKN2D	0	genome.wustl.edu	37	19	10677793	10677793	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	10677793	10677793	G	A	SNP	CDKN2D	ENST00000335766	human	ensembl	74_37	-1	known	nonsense	c.442	p.Q148*	0.928	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2D	HGNC	ENSG00000129355				197	0	0	55	33	37.5
ELAVL3	0	genome.wustl.edu	37	19	11565638	11565638	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	11565638	11565638	G	A	SNP	ELAVL3	ENST00000359227	human	ensembl	74_37	-1	known	silent	c.807	p.G269	1.000	tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361				402	0	0	128	40	23.8095
ZNF700	0	genome.wustl.edu	37	19	12059372	12059372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	12059372	12059372	G	A	SNP	ZNF700	ENST00000254321	human	ensembl	74_37	+1	known	missense	c.533	p.R178H	0.003	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757				265	0	0	120	43	26.3804
MIDN	0	genome.wustl.edu	37	19	1257208	1257208	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	1257208	1257208	C	T	SNP	MIDN	ENST00000300952	human	ensembl	74_37	+1	known	silent	c.1344	p.F448	0.998	NULL	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	MIDN	HGNC	ENSG00000167470				248	0	0	49	17	25.7576
DAND5	0	genome.wustl.edu	37	19	13084268	13084268	+	Silent	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	13084268	13084268	C	A	SNP	DAND5	ENST00000317060	human	ensembl	74_37	+1	known	silent	c.390	p.S130	0.164	pfam_DAN,pirsf_Cerberus	pfam_DAN,pirsf_Cerberus	-	no_errors	DAND5	HGNC	ENSG00000179284				264	0	0	71	27	27.551
DCAF15	0	genome.wustl.edu	37	19	14067019	14067019	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	14067019	14067019	C	T	SNP	DCAF15	ENST00000254337	human	ensembl	74_37	+1	known	silent	c.558	p.A186	0.122	NULL	NULL	-	no_errors	DCAF15	HGNC	ENSG00000132017				59	0	0	22	11	33.3333
RFX1	0	genome.wustl.edu	37	19	14104570	14104570	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	14104570	14104570	G	A	SNP	RFX1	ENST00000254325	human	ensembl	74_37	-1	known	missense	c.86	p.P29L	0.991	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX1	HGNC	ENSG00000132005				114	0	0	20	9	31.0345
PKN1	0	genome.wustl.edu	37	19	14581440	14581440	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	14581440	14581440	C	T	SNP	PKN1	ENST00000342216	human	ensembl	74_37	+1	known	silent	c.2508	p.D836	0.886	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN1	HGNC	ENSG00000123143				54	0	0	5	10	66.6667
CYP4F22	0	genome.wustl.edu	37	19	15651358	15651358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	15651358	15651358	C	T	SNP	CYP4F22	ENST00000269703	human	ensembl	74_37	+1	known	missense	c.769	p.R257C	0.875	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F22	HGNC	ENSG00000171954				196	0	0	72	22	23.4043
SIN3B	0	genome.wustl.edu	37	19	16980624	16980624	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	16980624	16980624	G	A	SNP	SIN3B	ENST00000379803	human	ensembl	74_37	+1	known	silent	c.2256	p.P752	0.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511				100	0	0	19	12	38.7097
CPAMD8	0	genome.wustl.edu	37	19	17038831	17038831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	17038831	17038831	C	T	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.3499	p.A1167T	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				166	0	0	34	14	29.1667
FCHO1	0	genome.wustl.edu	37	19	17881380	17881380	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	17881380	17881380	G	T	SNP	FCHO1	ENST00000252771	human	ensembl	74_37	+1	known	missense	c.483	p.M161I	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,superfamily_Clathrin_mu_C,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	FCHO1	HGNC	ENSG00000130475				103	0	0	20	4	16.6667
PIK3R2	0	genome.wustl.edu	37	19	18273010	18273010	+	Splice_Site	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	18273010	18273010	A	G	SNP	PIK3R2	ENST00000222254	human	ensembl	74_37	+1	known	splice_site	c.902-2	e7-2	0.996	-	-	-	no_errors	PIK3R2	HGNC	ENSG00000105647				41	0	0	16	11	40.7407
LRRC25	0	genome.wustl.edu	37	19	18502843	18502843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	18502843	18502843	C	T	SNP	LRRC25	ENST00000339007	human	ensembl	74_37	-1	known	missense	c.872	p.G291D	0.002	NULL	NULL	-	no_errors	LRRC25	HGNC	ENSG00000175489				104	0	0	21	5	19.2308
NCAN	0	genome.wustl.edu	37	19	19338531	19338531	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	19338531	19338531	C	G	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.2102	p.P701R	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				189	1	0.526316	61	23	27.381
ZNF14	0	genome.wustl.edu	37	19	19822525	19822525	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	19822525	19822525	T	C	SNP	ZNF14	ENST00000344099	human	ensembl	74_37	-1	known	missense	c.1565	p.E522G	0.091	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF14	HGNC	ENSG00000105708				284	0	0	149	8	5.09554
ZNF626	0	genome.wustl.edu	37	19	20808310	20808310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	20808310	20808310	C	T	SNP	ZNF626	ENST00000601440	human	ensembl	74_37	-1	known	missense	c.373	p.V125M	0.028	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171				212	0	0	103	25	19.5312
CHST8	0	genome.wustl.edu	37	19	34263898	34263898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	34263898	34263898	G	A	SNP	CHST8	ENST00000262622	human	ensembl	74_37	+1	known	missense	c.1205	p.R402H	0.998	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST8	HGNC	ENSG00000124302				86	0	0	19	13	40.625
LSR	0	genome.wustl.edu	37	19	35741230	35741230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	35741230	35741230	C	T	SNP	LSR	ENST00000361790	human	ensembl	74_37	+1	known	missense	c.266	p.A89V	0.336	pfscan_Ig-like_dom	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LSR	HGNC	ENSG00000105699				749	0	0	233	69	22.8477
USF2	0	genome.wustl.edu	37	19	35761435	35761435	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	35761435	35761435	C	T	SNP	USF2	ENST00000222305	human	ensembl	74_37	+1	known	missense	c.515	p.A172V	0.995	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	USF2	HGNC	ENSG00000105698				164	0	0	30	16	34.7826
MAG	0	genome.wustl.edu	37	19	35791272	35791272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	35791272	35791272	G	A	SNP	MAG	ENST00000392213	human	ensembl	74_37	+1	known	missense	c.935	p.G312D	0.999	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MAG	HGNC	ENSG00000105695				80	0	0	17	5	22.7273
GAPDHS	0	genome.wustl.edu	37	19	36027833	36027833	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	36027833	36027833	C	T	SNP	GAPDHS	ENST00000222286	human	ensembl	74_37	+1	known	silent	c.186	p.P62	0.000	NULL	pirsf_GlycerAld/Erythrose_P_DH,pfam_GlycerAld_3-P_DH_cat,pfam_GlycerAld_3-P_DH_NAD(P)-bd,smart_GlycerAld_3-P_DH_NAD(P)-bd,prints_GlycerAld/Erythrose_P_DH,tigrfam_Glyceraldehyde-3-P_DH_1	-	no_errors	GAPDHS	HGNC	ENSG00000105679				315	0	0	63	24	27.5862
KMT2B	0	genome.wustl.edu	37	19	36216189	36216189	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	36216189	36216189	C	T	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	silent	c.3597	p.G1199	0.130	pirsf_MeTrfase_trithorax,superfamily_Znf_FYVE_PHD	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				77	0	0	11	7	38.8889
LRFN3	0	genome.wustl.edu	37	19	36430331	36430331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	36430331	36430331	G	A	SNP	LRFN3	ENST00000246529	human	ensembl	74_37	+1	known	missense	c.4	p.A2T	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN3	HGNC	ENSG00000126243				241	0	0	42	34	44.7368
ZNF585B	0	genome.wustl.edu	37	19	37676954	37676954	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	37676954	37676954	T	C	SNP	ZNF585B	ENST00000532828	human	ensembl	74_37	-1	known	missense	c.1485	p.I495M	0.366	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585B	HGNC	ENSG00000245680				135	0	0	77	30	28.0374
ZNF569	0	genome.wustl.edu	37	19	37917233	37917233	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	37917233	37917233	C	T	SNP	ZNF569	ENST00000316950	human	ensembl	74_37	-1	known	silent	c.63	p.E21	0.999	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437				136	0	0	64	25	28.0899
ZFR2	0	genome.wustl.edu	37	19	3823259	3823259	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	3823259	3823259	C	T	SNP	ZFR2	ENST00000262961	human	ensembl	74_37	-1	known	silent	c.1356	p.P452	0.297	NULL	pfam_DZF,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR2	HGNC	ENSG00000105278				367	0	0	74	35	32.1101
ACTN4	0	genome.wustl.edu	37	19	39191313	39191313	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	39191313	39191313	G	A	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	missense	c.236	p.R79Q	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN4	HGNC	ENSG00000130402				143	0	0	43	25	36.7647
FCGBP	0	genome.wustl.edu	37	19	40399803	40399803	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	40399803	40399803	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	silent	c.5892	p.P1964	0.403	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				161	0	0	15	6	28.5714
CYP2A6	0	genome.wustl.edu	37	19	41349705	41349705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	41349705	41349705	C	T	SNP	CYP2A6	ENST00000301141	human	ensembl	74_37	-1	known	missense	c.1481	p.R494H	1.000	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A6	HGNC	ENSG00000255974				191	0	0	64	23	26.4368
AXL	0	genome.wustl.edu	37	19	41726691	41726691	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	41726691	41726691	C	T	SNP	AXL	ENST00000301178	human	ensembl	74_37	+1	known	missense	c.236	p.A79V	0.888	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601				125	1	0.793651	20	14	41.1765
CIC	0	genome.wustl.edu	37	19	42795827	42795827	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	42795827	42795827	G	C	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.2816	p.G939A	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				271	1	0.367647	82	31	27.4336
PSG11	0	genome.wustl.edu	37	19	43519387	43519387	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	43519387	43519387	G	T	SNP	PSG11	ENST00000320078	human	ensembl	74_37	-1	known	nonsense	c.845	p.S282*	0.004	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG11	HGNC	ENSG00000243130				435	0	0	167	63	27.3913
ZNF428	0	genome.wustl.edu	37	19	44111887	44111887	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	44111887	44111887	T	C	SNP	ZNF428	ENST00000300811	human	ensembl	74_37	-1	known	missense	c.449	p.E150G	0.055	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF428	HGNC	ENSG00000131116				60	0	0	9	6	40
ZNF284	0	genome.wustl.edu	37	19	44590402	44590402	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	44590402	44590402	A	C	SNP	ZNF284	ENST00000421176	human	ensembl	74_37	+1	known	missense	c.771	p.K257N	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF284	HGNC	ENSG00000186026				182	1	0.546448	78	35	30.9735
BCAM	0	genome.wustl.edu	37	19	45316790	45316790	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	45316790	45316790	G	A	SNP	BCAM	ENST00000270233	human	ensembl	74_37	+1	known	missense	c.697	p.A233T	0.931	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BCAM	HGNC	ENSG00000187244				217	1	0.458716	49	23	31.9444
SEMA6B	0	genome.wustl.edu	37	19	4548310	4548310	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	4548310	4548310	G	A	SNP	SEMA6B	ENST00000301293	human	ensembl	74_37	-1	known	silent	c.1419	p.V473	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6B	HGNC	ENSG00000167680				149	0	0	42	14	25
NKPD1	0	genome.wustl.edu	37	19	45656240	45656240	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	45656240	45656240	C	T	SNP	NKPD1	ENST00000317951	human	ensembl	74_37	-1	known	silent	c.1455	p.A485	0.983	pfam_KAP_NTPase	pfam_KAP_NTPase	-	no_errors	NKPD1	HGNC	ENSG00000179846				20	0	0	6	3	33.3333
RTN2	0	genome.wustl.edu	37	19	45992808	45992808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	45992808	45992808	G	A	SNP	RTN2	ENST00000245923	human	ensembl	74_37	-1	known	missense	c.1037	p.A346V	1.000	pfam_Reticulon,pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744				27	0	0	7	3	30
IGFL4	0	genome.wustl.edu	37	19	46543796	46543796	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	46543796	46543796	G	C	SNP	IGFL4	ENST00000377697	human	ensembl	74_37	-1	known	nonsense	c.50	p.S17*	0.005	NULL	NULL	-	no_errors	IGFL4	HGNC	ENSG00000204869				157	0	0	49	16	24.6154
TICAM1	0	genome.wustl.edu	37	19	4818093	4818093	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	4818093	4818093	C	T	SNP	TICAM1	ENST00000248244	human	ensembl	74_37	-1	known	silent	c.297	p.L99	0.227	pirsf_TICAM1	superfamily_TIR_dom,pirsf_TICAM1	-	no_errors	TICAM1	HGNC	ENSG00000127666				72	0	0	37	14	27.451
CYTH2	0	genome.wustl.edu	37	19	48977274	48977274	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	48977274	48977274	G	T	SNP	CYTH2	ENST00000427476	human	ensembl	74_37	+1	known	missense	c.547	p.D183Y	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH2	HGNC	ENSG00000105443				99	0	0	11	12	52.1739
IZUMO1	0	genome.wustl.edu	37	19	49246783	49246783	+	Splice_Site	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	49246783	49246783	C	A	SNP	IZUMO1	ENST00000332955	human	ensembl	74_37	-1	known	splice_site	c.419-1	e5-1	0.967	-	-	-	no_errors	IZUMO1	HGNC	ENSG00000182264				101	0	0	16	6	27.2727
AP2A1	0	genome.wustl.edu	37	19	50309974	50309974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	50309974	50309974	G	A	SNP	AP2A1	ENST00000354293	human	ensembl	74_37	+1	known	missense	c.2827	p.V943I	1.000	pfam_Clathrin_a-adaptin_app_sub_C,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961				154	0	0	43	19	30.6452
MED25	0	genome.wustl.edu	37	19	50339096	50339096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	50339096	50339096	G	A	SNP	MED25	ENST00000312865	human	ensembl	74_37	+1	known	missense	c.1859	p.G620D	1.000	NULL	pfam_Mediator_Med25_VWA,pfam_Mediator_Med25,pfam_Mediator_Med25_SD1,pfam_Mediator_Med25_NR-box	-	no_errors	MED25	HGNC	ENSG00000104973				81	0	0	14	11	44
KDM4B	0	genome.wustl.edu	37	19	5039897	5039897	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	5039897	5039897	C	T	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	silent	c.192	p.D64	0.428	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				217	0	0	49	27	35.5263
SYT3	0	genome.wustl.edu	37	19	51136065	51136065	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	51136065	51136065	A	C	SNP	SYT3	ENST00000338916	human	ensembl	74_37	-1	known	missense	c.152	p.I51S	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT3	HGNC	ENSG00000213023				208	0	0	65	5	7.14286
KLK2	0	genome.wustl.edu	37	19	51379894	51379894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	51379894	51379894	C	T	SNP	KLK2	ENST00000325321	human	ensembl	74_37	+1	known	missense	c.373	p.R125C	0.016	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK2	HGNC	ENSG00000167751				103	0	0	28	14	33.3333
KLK7	0	genome.wustl.edu	37	19	51483543	51483543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	51483543	51483543	C	T	SNP	KLK7	ENST00000391807	human	ensembl	74_37	-1	known	missense	c.422	p.G141E	0.892	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK7	HGNC	ENSG00000169035				105	0	0	24	8	25
TPGS1	0	genome.wustl.edu	37	19	518967	518967	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	518967	518967	C	T	SNP	TPGS1	ENST00000359315	human	ensembl	74_37	+1	known	silent	c.417	p.D139	0.999	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	TPGS1	HGNC	ENSG00000141933				39	0	0	3	4	57.1429
PTPRS	0	genome.wustl.edu	37	19	5210705	5210705	+	Silent	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	5210705	5210705	C	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	silent	c.5349	p.L1783	0.951	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				125	0	0	38	3	7.31707
ZNF614	0	genome.wustl.edu	37	19	52520479	52520479	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	52520479	52520479	C	T	SNP	ZNF614	ENST00000270649	human	ensembl	74_37	-1	known	silent	c.372	p.V124	0.006	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF614	HGNC	ENSG00000142556				61	0	0	55	3	5.17241
ZNF808	0	genome.wustl.edu	37	19	53050772	53050772	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	53050772	53050772	T	C	SNP	ZNF808	ENST00000359798	human	ensembl	74_37	+1	known	missense	c.71	p.L24S	0.038	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF808	HGNC	ENSG00000198482				368	0	0	100	47	31.9728
MIR1283-1	0	genome.wustl.edu	37	19	54191791	54191791	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	54191791	54191791	C	T	SNP	MIR1283-1	ENST00000408494	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.147	-	-	-	no_errors	MIR1283-1	HGNC	ENSG00000221421				168	0	0	53	33	38.3721
MIR526A2	0	genome.wustl.edu	37	19	54230198	54230198	+	RNA	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	54230198	54230198	T	C	SNP	MIR526A2	ENST00000390198	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.096	-	-	-	no_errors	MIR526A2	HGNC	ENSG00000211532				202	0	0	69	39	36.1111
TMC4	0	genome.wustl.edu	37	19	54676754	54676754	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	54676754	54676754	G	C	SNP	TMC4	ENST00000301187	human	ensembl	74_37	-1	known	missense	c.59	p.A20G	0.989	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608				558	1	0.178891	160	23	12.5683
NLRP11	0	genome.wustl.edu	37	19	56320425	56320425	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	56320425	56320425	C	A	SNP	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	missense	c.1551	p.M517I	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873				249	0	0	135	40	22.8571
ZNF787	0	genome.wustl.edu	37	19	56599550	56599550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	56599550	56599550	C	T	SNP	ZNF787	ENST00000270459	human	ensembl	74_37	-1	known	missense	c.991	p.A331T	0.990	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF787	HGNC	ENSG00000142409				35	0	0	5	2	28.5714
SAFB	0	genome.wustl.edu	37	19	5661753	5661753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	5661753	5661753	G	A	SNP	SAFB	ENST00000588852	human	ensembl	74_37	+1	known	missense	c.2087	p.R696H	1.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB	HGNC	ENSG00000160633				23	0	0	8	4	33.3333
SAFB	0	genome.wustl.edu	37	19	5668284	5668284	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	5668284	5668284	C	T	SNP	SAFB	ENST00000588852	human	ensembl	74_37	+1	known	silent	c.2736	p.R912	1.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB	HGNC	ENSG00000160633				142	0	0	27	19	41.3043
ZNF71	0	genome.wustl.edu	37	19	57134038	57134038	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	57134038	57134038	G	A	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	silent	c.1383	p.T461	0.005	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				111	0	0	45	15	25
FUT6	0	genome.wustl.edu	37	19	5831642	5831642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	5831642	5831642	C	T	SNP	FUT6	ENST00000592563	human	ensembl	74_37	-1	known	missense	c.937	p.A313T	0.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT6	HGNC	ENSG00000156413				89	0	0	35	6	14.6341
ZNF814	0	genome.wustl.edu	37	19	58386114	58386114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	58386114	58386114	C	T	SNP	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	missense	c.644	p.S215N	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				43	0	0	20	12	37.5
ZNF135	0	genome.wustl.edu	37	19	58579087	58579087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	58579087	58579087	G	A	SNP	ZNF135	ENST00000401053	human	ensembl	74_37	+1	known	missense	c.1307	p.C436Y	0.918	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF135	HGNC	ENSG00000176293				171	0	0	45	15	25
ZBTB45	0	genome.wustl.edu	37	19	59028938	59028938	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	59028938	59028938	C	T	SNP	ZBTB45	ENST00000354590	human	ensembl	74_37	-1	known	missense	c.103	p.V35M	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB45	HGNC	ENSG00000119574				136	0	0	33	16	32.6531
CLEC4G	0	genome.wustl.edu	37	19	7796189	7796189	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	7796189	7796189	C	T	SNP	CLEC4G	ENST00000328853	human	ensembl	74_37	-1	known	silent	c.183	p.A61	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4G	HGNC	ENSG00000182566				22	0	0	1	2	66.6667
MYO1F	0	genome.wustl.edu	37	19	8616964	8616964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	8616964	8616964	C	T	SNP	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	missense	c.589	p.V197M	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				282	0	0	64	21	24.7059
MYO1F	0	genome.wustl.edu	37	19	8619568	8619568	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	8619568	8619568	G	A	SNP	MYO1F	ENST00000598321	human	ensembl	74_37	-1	known	nonsense	c.223	p.R75*	0.487	NULL	superfamily_P-loop_NTPase	-	no_errors	MYO1F	HGNC	ENSG00000142347				175	0	0	45	21	31.8182
MBD3L1	0	genome.wustl.edu	37	19	8953876	8953876	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	8953876	8953876	G	A	SNP	MBD3L1	ENST00000305625	human	ensembl	74_37	+1	known	silent	c.522	p.A174	0.000	NULL	NULL	-	no_errors	MBD3L1	HGNC	ENSG00000170948				66	0	0	10	5	33.3333
MUC16	0	genome.wustl.edu	37	19	9083531	9083531	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	9083531	9083531	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.8284	p.S2762R	0.010	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				158	0	0	38	19	33.3333
OR7G2	0	genome.wustl.edu	37	19	9213400	9213400	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	9213400	9213400	T	G	SNP	OR7G2	ENST00000305456	human	ensembl	74_37	-1	known	missense	c.583	p.I195L	0.040	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7G2	HGNC	ENSG00000170923				146	0	0	44	15	25.4237
CHST10	0	genome.wustl.edu	37	2	101023061	101023061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	101023061	101023061	G	A	SNP	CHST10	ENST00000542617	human	ensembl	74_37	-1	known	missense	c.221	p.T74M	0.964	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	CHST10	HGNC	ENSG00000115526				660	0	0	201	90	30.9278
NPAS2	0	genome.wustl.edu	37	2	101606806	101606806	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	101606806	101606806	C	A	SNP	NPAS2	ENST00000542504	human	ensembl	74_37	+1	known	missense	c.2111	p.A704D	0.025	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485				143	0	0	43	19	30.6452
GPR45	0	genome.wustl.edu	37	2	105858503	105858503	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	105858503	105858503	C	T	SNP	GPR45	ENST00000258456	human	ensembl	74_37	+1	known	missense	c.188	p.P63L	0.996	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR45	HGNC	ENSG00000135973				231	0	0	73	33	31.1321
ATP6V1C2	0	genome.wustl.edu	37	2	10918696	10918696	+	Splice_Site	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	10918696	10918696	A	T	SNP	ATP6V1C2	ENST00000272238	human	ensembl	74_37	+1	known	splice_site	c.964-2	e11-2	1.000	-	-	-	no_errors	ATP6V1C2	HGNC	ENSG00000143882				91	0	0	36	3	7.69231
CKAP2L	0	genome.wustl.edu	37	2	113514492	113514492	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	113514492	113514492	C	T	SNP	CKAP2L	ENST00000302450	human	ensembl	74_37	-1	known	silent	c.456	p.Q152	0.617	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607				98	0	0	56	26	31.7073
INSIG2	0	genome.wustl.edu	37	2	118864334	118864334	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	118864334	118864334	A	G	SNP	INSIG2	ENST00000245787	human	ensembl	74_37	+1	known	missense	c.391	p.I131V	1.000	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629				108	0	0	70	27	27.8351
LPIN1	0	genome.wustl.edu	37	2	11907961	11907961	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	11907961	11907961	G	A	SNP	LPIN1	ENST00000449576	human	ensembl	74_37	+1	known	missense	c.412	p.V138I	1.000	pfam_Lipin_N	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,superfamily_WD40_repeat_dom,smart_LNS2	-	no_errors	LPIN1	HGNC	ENSG00000134324				157	0	0	51	19	27.1429
STEAP3	0	genome.wustl.edu	37	2	120005667	120005667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	120005667	120005667	G	A	SNP	STEAP3	ENST00000393110	human	ensembl	74_37	+1	known	missense	c.935	p.R312H	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP3	HGNC	ENSG00000115107				86	0	0	28	16	36.3636
GLI2	0	genome.wustl.edu	37	2	121684992	121684992	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	121684992	121684992	C	T	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	silent	c.204	p.H68	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				408	0	0	103	46	30.8725
TUBA3E	0	genome.wustl.edu	37	2	130951495	130951495	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	130951495	130951495	G	T	SNP	TUBA3E	ENST00000312988	human	ensembl	74_37	-1	known	missense	c.920	p.P307H	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086				305	0	0	118	36	23.3766
POTEI	0	genome.wustl.edu	37	2	131221046	131221046	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	131221046	131221046	G	A	SNP	POTEI	ENST00000451531	human	ensembl	74_37	-1	novel	silent	c.2571	p.D857	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEI	HGNC	ENSG00000196834				42	0	0	27	11	28.9474
RAB3GAP1	0	genome.wustl.edu	37	2	135848572	135848572	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	135848572	135848572	T	C	SNP	RAB3GAP1	ENST00000264158	human	ensembl	74_37	+1	known	missense	c.155	p.I52T	0.997	NULL	NULL	-	no_errors	RAB3GAP1	HGNC	ENSG00000115839				137	0	0	61	21	25.6098
ZRANB3	0	genome.wustl.edu	37	2	135988401	135988401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	135988401	135988401	G	A	SNP	ZRANB3	ENST00000264159	human	ensembl	74_37	-1	known	missense	c.1636	p.R546W	0.008	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988				149	0	0	64	32	33.3333
THSD7B	0	genome.wustl.edu	37	2	137988713	137988713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	137988713	137988713	C	T	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	missense	c.1823	p.T608M	0.997	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				64	0	0	26	13	33.3333
LRP1B	0	genome.wustl.edu	37	2	141607887	141607887	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	141607887	141607887	A	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.4723	p.F1575I	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				29	0	0	19	8	29.6296
MBD5	0	genome.wustl.edu	37	2	149227818	149227818	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	149227818	149227818	T	C	SNP	MBD5	ENST00000407073	human	ensembl	74_37	+1	known	missense	c.2306	p.V769A	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP_dom	-	no_errors	MBD5	HGNC	ENSG00000204406				183	0	0	88	35	28.4553
NEB	0	genome.wustl.edu	37	2	152347012	152347012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	152347012	152347012	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.25171	p.R8391W	1.000	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				16	0	0	6	5	45.4545
NBAS	0	genome.wustl.edu	37	2	15534390	15534390	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	15534390	15534390	C	T	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.3218	p.R1073H	0.619	pfam_Sec39	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				38	0	0	20	21	51.2195
KCNH7	0	genome.wustl.edu	37	2	163292018	163292018	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	163292018	163292018	G	A	SNP	KCNH7	ENST00000332142	human	ensembl	74_37	-1	known	silent	c.1644	p.G548	0.215	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611				96	0	0	45	13	22.4138
PXDN	0	genome.wustl.edu	37	2	1652889	1652889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	1652889	1652889	C	T	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.2663	p.G888D	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				70	0	0	17	7	29.1667
SCN2A	0	genome.wustl.edu	37	2	166245809	166245809	+	Silent	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	166245809	166245809	A	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	silent	c.5493	p.I1831	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				249	0	0	108	42	28
SCN9A	0	genome.wustl.edu	37	2	167055493	167055493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	167055493	167055493	G	A	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.5659	p.R1887W	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				268	0	0	106	43	28.8591
XIRP2	0	genome.wustl.edu	37	2	168106617	168106617	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	168106617	168106617	A	C	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.8715	p.Q2905H	0.376	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				176	0	0	78	31	28.4404
XIRP2	0	genome.wustl.edu	37	2	168115319	168115319	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	168115319	168115319	A	G	SNP	XIRP2	ENST00000420519	human	ensembl	74_37	+1	known	missense	c.2362	p.T788A	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	XIRP2	HGNC	ENSG00000163092				73	0	0	44	11	20
LRP2	0	genome.wustl.edu	37	2	170058203	170058203	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	170058203	170058203	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.8387	p.R2796H	0.003	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				101	0	0	54	12	18.1818
SATB2	0	genome.wustl.edu	37	2	200137257	200137257	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	200137257	200137257	C	A	SNP	SATB2	ENST00000260926	human	ensembl	74_37	-1	known	missense	c.1879	p.G627W	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042				133	0	0	61	21	25.6098
AOX1	0	genome.wustl.edu	37	2	201473845	201473845	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	201473845	201473845	T	A	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	missense	c.1046	p.I349N	1.000	pfam_Mopterin_DH_FAD-bd,superfamily_FAD-bd_2,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356				56	0	0	39	9	18.75
ALS2	0	genome.wustl.edu	37	2	202626188	202626188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	202626188	202626188	C	T	SNP	ALS2	ENST00000264276	human	ensembl	74_37	-1	known	missense	c.529	p.G177S	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_RCC1/BLIP-II,superfamily_DH-domain,smart_MORN,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain,prints_Reg_chr_condens	-	no_errors	ALS2	HGNC	ENSG00000003393				114	0	0	55	30	35.2941
NOP58	0	genome.wustl.edu	37	2	203139835	203139835	+	Splice_Site	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	203139835	203139835	G	T	SNP	NOP58	ENST00000264279	human	ensembl	74_37	+1	known	splice_site	c.46-1	e2-1	1.000	-	-	-	no_errors	NOP58	HGNC	ENSG00000055044				68	0	0	19	7	26.9231
PARD3B	0	genome.wustl.edu	37	2	205829969	205829969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	205829969	205829969	C	T	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	missense	c.317	p.T106I	0.945	pfam_DUF3534	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				64	0	0	20	11	35.4839
PARD3B	0	genome.wustl.edu	37	2	206023539	206023539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	206023539	206023539	G	A	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	missense	c.1528	p.G510R	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				182	0	0	68	25	26.8817
RPE	0	genome.wustl.edu	37	2	210880764	210880764	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	210880764	210880764	G	A	SNP	RPE	ENST00000359429	human	ensembl	74_37	+1	known	silent	c.270	p.Q90	0.965	pfam_Ribul_P_3_epim-like,superfamily_RibuloseP-bd_barrel,tigrfam_Ribul_P_3_epim-like	pfam_Ribul_P_3_epim-like,superfamily_RibuloseP-bd_barrel,tigrfam_Ribul_P_3_epim-like	-	no_errors	RPE	HGNC	ENSG00000197713				99	0	0	49	16	24.6154
SMARCAL1	0	genome.wustl.edu	37	2	217279576	217279576	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	217279576	217279576	A	G	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	missense	c.149	p.K50R	0.036	NULL	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375				308	0	0	92	30	24.5902
RNF25	0	genome.wustl.edu	37	2	219529010	219529010	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	219529010	219529010	G	A	SNP	RNF25	ENST00000295704	human	ensembl	74_37	-1	known	silent	c.1050	p.P350	0.000	NULL	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_RING,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF25	HGNC	ENSG00000163481				193	0	0	55	37	40.2174
CRYBA2	0	genome.wustl.edu	37	2	219855029	219855029	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	219855029	219855029	A	C	SNP	CRYBA2	ENST00000295728	human	ensembl	74_37	-1	known	missense	c.539	p.L180R	0.981	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA2	HGNC	ENSG00000163499				190	0	0	41	9	18
SPEG	0	genome.wustl.edu	37	2	220332024	220332024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	220332024	220332024	C	T	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.3010	p.R1004C	0.306	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				233	0	0	46	17	26.9841
FAM124B	0	genome.wustl.edu	37	2	225266179	225266179	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	225266179	225266179	G	A	SNP	FAM124B	ENST00000409685	human	ensembl	74_37	-1	known	missense	c.307	p.R103W	0.000	NULL	NULL	-	no_errors	FAM124B	HGNC	ENSG00000124019				82	0	0	26	12	31.5789
TM4SF20	0	genome.wustl.edu	37	2	228235653	228235653	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	228235653	228235653	G	T	SNP	TM4SF20	ENST00000304568	human	ensembl	74_37	-1	known	missense	c.227	p.A76E	0.004	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF20	HGNC	ENSG00000168955				652	0	0	240	92	27.7108
ITM2C	0	genome.wustl.edu	37	2	231740484	231740484	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	231740484	231740484	C	T	SNP	ITM2C	ENST00000326427	human	ensembl	74_37	+1	known	silent	c.411	p.G137	0.018	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	ITM2C	HGNC	ENSG00000135916				329	0	0	84	16	16
HJURP	0	genome.wustl.edu	37	2	234749823	234749823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	234749823	234749823	G	A	SNP	HJURP	ENST00000411486	human	ensembl	74_37	-1	known	missense	c.1603	p.R535C	0.000	NULL	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485				215	0	0	48	15	23.8095
UBE2F	0	genome.wustl.edu	37	2	238881818	238881818	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	238881818	238881818	G	A	SNP	UBE2F	ENST00000272930	human	ensembl	74_37	+1	known	silent	c.69	p.A23	0.043	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2F	HGNC	ENSG00000184182				185	0	0	55	29	34.5238
OR6B2	0	genome.wustl.edu	37	2	240969019	240969019	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	240969019	240969019	G	A	SNP	OR6B2	ENST00000402971	human	ensembl	74_37	-1	known	silent	c.828	p.A276	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6B2	HGNC	ENSG00000182083				175	0	0	33	29	46.7742
KIF1A	0	genome.wustl.edu	37	2	241726711	241726711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	241726711	241726711	C	T	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	missense	c.386	p.R129Q	0.994	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				212	0	0	20	12	37.5
ANO7	0	genome.wustl.edu	37	2	242135202	242135202	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	242135202	242135202	G	T	SNP	ANO7	ENST00000274979	human	ensembl	74_37	+1	known	missense	c.413	p.R138M	0.017	NULL	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205				149	0	0	21	8	27.5862
SEPT2	0	genome.wustl.edu	37	2	242265515	242265515	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	242265515	242265515	A	G	SNP	SEPT2	ENST00000360051	human	ensembl	74_37	+1	known	silent	c.117	p.T39	0.575	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin,prints_Septin2	-	no_errors	SEPT2	HGNC	ENSG00000168385				74	0	0	15	15	50
ADCY3	0	genome.wustl.edu	37	2	25141664	25141664	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	25141664	25141664	G	T	SNP	ADCY3	ENST00000260600	human	ensembl	74_37	-1	known	missense	c.193	p.L65I	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031				144	1	0.689655	48	3	5.88235
DTNB	0	genome.wustl.edu	37	2	25650468	25650468	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	25650468	25650468	G	A	SNP	DTNB	ENST00000406818	human	ensembl	74_37	-1	known	missense	c.1490	p.S497L	1.000	pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNB	HGNC	ENSG00000138101				142	0	0	42	16	27.5862
OTOF	0	genome.wustl.edu	37	2	26699057	26699057	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	26699057	26699057	C	A	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	missense	c.2805	p.E935D	1.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				64	0	0	25	7	21.875
CIB4	0	genome.wustl.edu	37	2	26804180	26804180	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	26804180	26804180	C	T	SNP	CIB4	ENST00000403670	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	CIB4	HGNC	ENSG00000157884				55	0	0	9	4	30.7692
PREB	0	genome.wustl.edu	37	2	27355197	27355197	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	27355197	27355197	T	C	SNP	PREB	ENST00000260643	human	ensembl	74_37	-1	known	missense	c.827	p.Q276R	1.000	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PREB	HGNC	ENSG00000138073				198	0	0	57	24	29.6296
SLC5A6	0	genome.wustl.edu	37	2	27426696	27426696	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	27426696	27426696	G	A	SNP	SLC5A6	ENST00000310574	human	ensembl	74_37	-1	known	missense	c.1045	p.P349S	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074				84	0	0	24	13	35.1351
IFT172	0	genome.wustl.edu	37	2	27684682	27684682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	27684682	27684682	C	T	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	missense	c.2137	p.G713S	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				103	0	0	46	3	6.12245
SERTAD2	0	genome.wustl.edu	37	2	64863927	64863927	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	64863927	64863927	C	T	SNP	SERTAD2	ENST00000313349	human	ensembl	74_37	-1	known	missense	c.79	p.G27S	1.000	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD2	HGNC	ENSG00000179833				250	0	0	81	24	22.8571
TEX261	0	genome.wustl.edu	37	2	71216123	71216123	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	71216123	71216123	G	T	SNP	TEX261	ENST00000272438	human	ensembl	74_37	-1	known	missense	c.397	p.L133M	1.000	pfam_Transmembrane_adaptor_Erv26	pfam_Transmembrane_adaptor_Erv26	-	no_errors	TEX261	HGNC	ENSG00000144043				40	0	0	14	9	39.1304
ZNF638	0	genome.wustl.edu	37	2	71629219	71629219	+	Splice_Site	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	71629219	71629219	T	C	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	splice_site	c.2829+2	e15+2	1.000	-	-	-	no_errors	ZNF638	HGNC	ENSG00000075292				59	0	0	33	12	26.6667
DYSF	0	genome.wustl.edu	37	2	71797446	71797446	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	71797446	71797446	C	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.3106	p.R1036W	0.997	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				136	0	0	39	15	27.7778
DYSF	0	genome.wustl.edu	37	2	71801367	71801367	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	71801367	71801367	G	A	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.3307	p.A1103T	1.000	smart_Peroxin/Ferlin	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				295	0	0	86	47	35.3383
FBXO41	0	genome.wustl.edu	37	2	73487661	73487661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	73487661	73487661	G	A	SNP	FBXO41	ENST00000295133	human	ensembl	74_37	-1	known	missense	c.2488	p.R830W	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO41	HGNC	ENSG00000163013				22	0	0	10	4	28.5714
DGUOK-AS1	0	genome.wustl.edu	37	2	74185189	74185189	+	RNA	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	74185189	74185189	T	G	SNP	DGUOK-AS1	ENST00000413452	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	DGUOK-AS1	HGNC	ENSG00000237883				26	0	0	8	8	50
DCTN1	0	genome.wustl.edu	37	2	74597439	74597439	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	74597439	74597439	C	T	SNP	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	silent	c.1161	p.E387	1.000	superfamily_P-loop_NTPase	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				90	0	0	30	14	31.8182
KCMF1	0	genome.wustl.edu	37	2	85280302	85280302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	85280302	85280302	C	T	SNP	KCMF1	ENST00000409785	human	ensembl	74_37	+1	known	missense	c.916	p.R306C	1.000	NULL	pfam_Znf_ZZ,pfam_Di19_Zn_binding,smart_Znf_ZZ,smart_Znf_C2H2-like,pfscan_Znf_ZZ,pfscan_Znf_C2H2	-	no_errors	KCMF1	HGNC	ENSG00000176407				57	0	0	15	5	25
TEX37	0	genome.wustl.edu	37	2	88828731	88828731	+	Silent	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	88828731	88828731	C	A	SNP	TEX37	ENST00000303254	human	ensembl	74_37	+1	known	silent	c.282	p.A94	0.000	NULL	NULL	-	no_errors	TEX37	HGNC	ENSG00000172073				193	0	0	64	37	36.6337
EIF2AK3	0	genome.wustl.edu	37	2	88885399	88885399	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	88885399	88885399	G	A	SNP	EIF2AK3	ENST00000303236	human	ensembl	74_37	-1	known	missense	c.1610	p.T537M	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071				91	0	0	41	14	25.4545
ASTL	0	genome.wustl.edu	37	2	96789817	96789817	+	Silent	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	96789817	96789817	T	G	SNP	ASTL	ENST00000342380	human	ensembl	74_37	-1	known	silent	c.1068	p.A356	0.011	NULL	pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	-	no_errors	ASTL	HGNC	ENSG00000188886				256	0	0	52	16	23.5294
RALGAPA2	0	genome.wustl.edu	37	20	20484084	20484084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	20484084	20484084	C	T	SNP	RALGAPA2	ENST00000202677	human	ensembl	74_37	-1	known	missense	c.5119	p.A1707T	1.000	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA2	HGNC	ENSG00000188559				73	0	0	28	16	36.3636
SSTR4	0	genome.wustl.edu	37	20	23016316	23016316	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	23016316	23016316	G	T	SNP	SSTR4	ENST00000255008	human	ensembl	74_37	+1	known	missense	c.196	p.A66S	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_4,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671				222	0	0	71	30	29.703
CD93	0	genome.wustl.edu	37	20	23065176	23065176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	23065176	23065176	C	T	SNP	CD93	ENST00000246006	human	ensembl	74_37	-1	known	missense	c.1654	p.A552T	0.000	pirsf_CD93/CD141	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				149	0	0	50	16	24.2424
APMAP	0	genome.wustl.edu	37	20	24952096	24952096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	24952096	24952096	G	A	SNP	APMAP	ENST00000217456	human	ensembl	74_37	-1	known	missense	c.538	p.R180C	1.000	pfam_SGL	pfam_Strictosidine_synth_cons-reg,pfam_SGL	-	no_errors	APMAP	HGNC	ENSG00000101474				79	0	0	27	14	34.1463
ACSS1	0	genome.wustl.edu	37	20	24994689	24994689	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	24994689	24994689	C	T	SNP	ACSS1	ENST00000323482	human	ensembl	74_37	-1	known	missense	c.1360	p.A454T	0.828	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930				33	0	0	13	6	31.5789
PTPRA	0	genome.wustl.edu	37	20	3007405	3007405	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	3007405	3007405	C	T	SNP	PTPRA	ENST00000425918	human	ensembl	74_37	+1	known	missense	c.1720	p.R574C	0.990	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670				73	0	0	39	8	17.0213
LZTS3	0	genome.wustl.edu	37	20	3147530	3147530	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	3147530	3147530	C	T	SNP	LZTS3	ENST00000329152	human	ensembl	74_37	-1	known	missense	c.280	p.A94T	1.000	NULL	NULL	-	no_errors	LZTS3	Uniprot_gn	ENSG00000088899				56	0	0	25	4	13.7931
BPIFA3	0	genome.wustl.edu	37	20	31815476	31815476	+	RNA	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	31815476	31815476	G	C	SNP	BPIFA3	ENST00000471233	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BPIFA3	HGNC	ENSG00000131059				43	0	0	22	12	35.2941
NECAB3	0	genome.wustl.edu	37	20	32246607	32246607	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	32246607	32246607	C	T	SNP	NECAB3	ENST00000246190	human	ensembl	74_37	-1	known	missense	c.913	p.A305T	1.000	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel	pfam_Antibiotic_mOase,pfam_EF_hand_dom,superfamily_Dimeric_a/b-barrel,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NECAB3	HGNC	ENSG00000125967				63	0	0	24	7	22.5806
TP53INP2	0	genome.wustl.edu	37	20	33297184	33297184	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	33297184	33297184	G	A	SNP	TP53INP2	ENST00000374809	human	ensembl	74_37	+1	known	missense	c.269	p.R90H	0.998	NULL	NULL	-	no_errors	TP53INP2	HGNC	ENSG00000078804				120	0	0	26	16	38.0952
GGT7	0	genome.wustl.edu	37	20	33450750	33450750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	33450750	33450750	C	T	SNP	GGT7	ENST00000336431	human	ensembl	74_37	-1	novel	missense	c.424	p.V142M	1.000	NULL	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT7	HGNC	ENSG00000131067				45	0	0	15	3	16.6667
ATRN	0	genome.wustl.edu	37	20	3543988	3543988	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	3543988	3543988	A	G	SNP	ATRN	ENST00000262919	human	ensembl	74_37	+1	known	silent	c.1764	p.S588	0.996	NULL	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB_dom,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812				171	0	0	90	66	42.3077
BPI	0	genome.wustl.edu	37	20	36939000	36939000	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	36939000	36939000	G	A	SNP	BPI	ENST00000262865	human	ensembl	74_37	+1	known	missense	c.494	p.S165N	0.028	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPI	HGNC	ENSG00000101425				110	0	0	35	20	36.3636
CENPB	0	genome.wustl.edu	37	20	3766457	3766457	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	3766457	3766457	A	G	SNP	CENPB	ENST00000379751	human	ensembl	74_37	-1	known	missense	c.674	p.L225P	0.945	pfam_DDE_SF_endonuclease_CENPB-like	pfam_Centromere_CenpB_dimerisation,pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_Psq,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	CENPB	HGNC	ENSG00000125817				162	0	0	67	6	8.21918
L3MBTL1	0	genome.wustl.edu	37	20	42161428	42161428	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	42161428	42161428	G	T	SNP	L3MBTL1	ENST00000418998	human	ensembl	74_37	+1	known	missense	c.1234	p.G412C	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_Znf_C2HC,superfamily_SAM/pointed,smart_Mbt,pfscan_Mbt	-	no_errors	L3MBTL1	HGNC	ENSG00000185513				331	0	0	96	36	27.2727
ADRA1D	0	genome.wustl.edu	37	20	4229294	4229294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	4229294	4229294	G	A	SNP	ADRA1D	ENST00000379453	human	ensembl	74_37	-1	known	missense	c.311	p.A104V	0.981	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_ADRA1D_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	ADRA1D	HGNC	ENSG00000171873				43	0	0	14	4	22.2222
MMP9	0	genome.wustl.edu	37	20	44639956	44639956	+	Splice_Site	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	44639956	44639956	G	A	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	splice_site	c.823+1	e5+1	1.000	-	-	-	no_errors	MMP9	HGNC	ENSG00000100985				123	0	0	45	17	27.4194
NCOA3	0	genome.wustl.edu	37	20	46279854	46279854	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	46279854	46279854	G	A	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	silent	c.3780	p.Q1260	0.884	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				103	1	0.961538	51	10	16.3934
ARFGEF2	0	genome.wustl.edu	37	20	47567893	47567893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	47567893	47567893	G	A	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.310	p.A104T	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				65	0	0	32	16	33.3333
PTGIS	0	genome.wustl.edu	37	20	48156225	48156225	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	48156225	48156225	C	T	SNP	PTGIS	ENST00000244043	human	ensembl	74_37	-1	known	silent	c.555	p.A185	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212				38	0	0	9	6	40
ATP9A	0	genome.wustl.edu	37	20	50235243	50235243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	50235243	50235243	G	A	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	missense	c.2308	p.R770C	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				114	0	0	31	18	36.7347
MC3R	0	genome.wustl.edu	37	20	54824580	54824580	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	54824580	54824580	C	T	SNP	MC3R	ENST00000243911	human	ensembl	74_37	+1	known	silent	c.681	p.A227	0.891	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Mcort_3_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_3_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC3R	HGNC	ENSG00000124089				91	0	0	46	27	36.9863
NPEPL1	0	genome.wustl.edu	37	20	57276158	57276158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	57276158	57276158	G	A	SNP	NPEPL1	ENST00000356091	human	ensembl	74_37	+1	known	missense	c.766	p.A256T	1.000	pfam_Peptidase_M17_C,prints_Leucine_aapep/pepB	pfam_Peptidase_M17_C,prints_Leucine_aapep/pepB	-	no_errors	NPEPL1	HGNC	ENSG00000215440				27	0	0	3	2	40
MCM8	0	genome.wustl.edu	37	20	5948171	5948171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	5948171	5948171	G	A	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	missense	c.965	p.S322N	1.000	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				181	0	0	72	61	45.8647
LAMA5	0	genome.wustl.edu	37	20	60909086	60909086	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	60909086	60909086	C	T	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.2749	p.V917M	0.990	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				76	0	0	17	4	19.0476
DIDO1	0	genome.wustl.edu	37	20	61525801	61525801	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	61525801	61525801	C	A	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.2536	p.A846S	0.975	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				143	0	0	35	19	35.1852
CHRNA4	0	genome.wustl.edu	37	20	61978135	61978135	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	61978135	61978135	C	T	SNP	CHRNA4	ENST00000370263	human	ensembl	74_37	-1	known	silent	c.1839	p.G613	0.971	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204				92	0	0	26	4	13.3333
MYT1	0	genome.wustl.edu	37	20	62838987	62838987	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	62838987	62838987	C	T	SNP	MYT1	ENST00000536311	human	ensembl	74_37	+1	known	silent	c.438	p.I146	0.625	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132				310	0	0	79	38	32.4786
PLCB1	0	genome.wustl.edu	37	20	8698474	8698474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	8698474	8698474	G	A	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	missense	c.1492	p.E498K	1.000	pirsf_PLC-beta,superfamily_PLC-like_Pdiesterase_TIM-brl	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				87	0	0	34	15	30.6122
TPTE	0	genome.wustl.edu	37	21	10906876	10906876	+	RNA	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	10906876	10906876	T	C	SNP	TPTE	ENST00000415664	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TPTE	HGNC	ENSG00000166157				176	0	0	71	9	11.25
ADAMTS5	0	genome.wustl.edu	37	21	28337989	28337989	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	28337989	28337989	T	A	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	missense	c.722	p.Q241L	0.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				19	0	0	11	5	31.25
RWDD2B	0	genome.wustl.edu	37	21	30380774	30380774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	30380774	30380774	C	T	SNP	RWDD2B	ENST00000493196	human	ensembl	74_37	-1	known	missense	c.236	p.R79Q	1.000	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	pfam_DUF1115,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	-	no_errors	RWDD2B	HGNC	ENSG00000156253				234	0	0	86	22	20.3704
KRTAP19-7	0	genome.wustl.edu	37	21	31933432	31933432	+	Silent	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	31933432	31933432	A	C	SNP	KRTAP19-7	ENST00000334849	human	ensembl	74_37	-1	known	silent	c.177	p.S59	0.029	NULL	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP19-7	HGNC	ENSG00000244362				269	0	0	97	40	29.1971
KRTAP11-1	0	genome.wustl.edu	37	21	32253783	32253783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	32253783	32253783	C	T	SNP	KRTAP11-1	ENST00000332378	human	ensembl	74_37	-1	known	missense	c.61	p.V21I	0.004	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP11-1	HGNC	ENSG00000182591				150	0	0	55	25	31.25
HUNK	0	genome.wustl.edu	37	21	33370838	33370838	+	Splice_Site	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	33370838	33370838	G	A	SNP	HUNK	ENST00000270112	human	ensembl	74_37	+1	known	splice_site	c.1487-1	e11-1	1.000	-	-	-	no_errors	HUNK	HGNC	ENSG00000142149				250	0	0	65	22	25.2874
SYNJ1	0	genome.wustl.edu	37	21	34012041	34012041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	34012041	34012041	G	A	SNP	SYNJ1	ENST00000433931	human	ensembl	74_37	-1	known	missense	c.3754	p.R1252W	1.000	NULL	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082				89	0	0	36	5	12.1951
PAXBP1	0	genome.wustl.edu	37	21	34127549	34127549	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	34127549	34127549	C	A	SNP	PAXBP1	ENST00000331923	human	ensembl	74_37	-1	known	missense	c.1499	p.S500I	1.000	NULL	pfam_GCFC_dom	-	no_errors	PAXBP1	HGNC	ENSG00000159086				83	0	0	47	18	27.6923
SLC5A3	0	genome.wustl.edu	37	21	35467627	35467627	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	35467627	35467627	C	T	SNP	SLC5A3	ENST00000381151	human	ensembl	74_37	+1	known	missense	c.130	p.R44C	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A3	HGNC	ENSG00000198743				259	1	0.384615	79	35	30.7018
DSCAM	0	genome.wustl.edu	37	21	41559141	41559141	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	41559141	41559141	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.2696	p.R899H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				84	0	0	38	8	17.3913
RIPK4	0	genome.wustl.edu	37	21	43161712	43161712	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	43161712	43161712	G	A	SNP	RIPK4	ENST00000352483	human	ensembl	74_37	-1	known	silent	c.1785	p.H595	0.965	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK4	HGNC	ENSG00000183421				86	0	0	40	18	31.0345
UMODL1	0	genome.wustl.edu	37	21	43496223	43496223	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	43496223	43496223	C	T	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	silent	c.186	p.G62	0.645	pfam_EMI_domain,pfscan_EMI_domain	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				151	0	0	67	21	23.8636
C21orf128	0	genome.wustl.edu	37	21	43523941	43523941	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	43523941	43523941	C	A	SNP	C21orf128	ENST00000329015	human	ensembl	74_37	-1	putative	missense	c.292	p.V98F	0.000	NULL	NULL	-	no_errors	C21orf128	HGNC	ENSG00000184385				83	0	0	39	3	7.14286
AIRE	0	genome.wustl.edu	37	21	45706903	45706903	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	45706903	45706903	C	T	SNP	AIRE	ENST00000291582	human	ensembl	74_37	+1	known	missense	c.350	p.A117V	0.000	NULL	pfam_Sp100,pfam_Znf_PHD-finger,pfam_SAND_dom,superfamily_Znf_FYVE_PHD,superfamily_SAND_dom-like,smart_SAND_dom,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_SAND_dom,prints_AIRE	-	no_errors	AIRE	HGNC	ENSG00000160224				182	0	0	34	8	19.0476
KRTAP10-2	0	genome.wustl.edu	37	21	45970648	45970648	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	45970648	45970648	A	G	SNP	KRTAP10-2	ENST00000391621	human	ensembl	74_37	-1	known	missense	c.694	p.S232P	0.959	NULL	NULL	-	no_errors	KRTAP10-2	HGNC	ENSG00000205445				326	1	0.30581	111	6	5.12821
POFUT2	0	genome.wustl.edu	37	21	46685276	46685276	+	RNA	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	46685276	46685276	C	A	SNP	POFUT2	ENST00000471540	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POFUT2	HGNC	ENSG00000186866				10	0	0	10	4	28.5714
COL18A1	0	genome.wustl.edu	37	21	46888235	46888235	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	21	46888235	46888235	C	T	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	silent	c.1431	p.P477	0.973	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				213	0	0	62	20	24.3902
GAB4	0	genome.wustl.edu	37	22	17444669	17444669	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	17444669	17444669	C	T	SNP	GAB4	ENST00000400588	human	ensembl	74_37	-1	known	silent	c.1527	p.P509	0.099	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB4	HGNC	ENSG00000215568				89	0	0	22	11	33.3333
MICAL3	0	genome.wustl.edu	37	22	18387473	18387473	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	18387473	18387473	T	C	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	missense	c.397	p.T133A	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				353	0	0	136	54	28.4211
BMS1P20	0	genome.wustl.edu	37	22	22664606	22664606	+	RNA	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	22664606	22664606	A	G	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				36	0	0	30	3	9.09091
RTDR1	0	genome.wustl.edu	37	22	23406130	23406130	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	23406130	23406130	G	A	SNP	RTDR1	ENST00000216036	human	ensembl	74_37	-1	known	silent	c.603	p.S201	0.001	superfamily_ARM-type_fold	pfam_HEAT,pfam_Armadillo,superfamily_ARM-type_fold	-	no_errors	RTDR1	HGNC	ENSG00000100218				88	0	0	24	14	36.8421
MMP11	0	genome.wustl.edu	37	22	24124566	24124566	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	24124566	24124566	G	A	SNP	MMP11	ENST00000215743	human	ensembl	74_37	+1	known	missense	c.1229	p.R410H	1.000	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP11	HGNC	ENSG00000099953				97	0	0	27	6	18.1818
CABIN1	0	genome.wustl.edu	37	22	24515545	24515545	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	24515545	24515545	G	A	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	silent	c.4512	p.Q1504	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				203	0	0	58	43	42.5743
SNRPD3	0	genome.wustl.edu	37	22	24964106	24964106	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	24964106	24964106	G	T	SNP	SNRPD3	ENST00000215829	human	ensembl	74_37	+1	known	missense	c.281	p.G94V	0.997	superfamily_LSM_dom	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPD3	HGNC	ENSG00000100028				191	0	0	53	11	17.1875
MYO18B	0	genome.wustl.edu	37	22	26286802	26286802	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	26286802	26286802	C	A	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.4394	p.A1465E	1.000	superfamily_tRNA-bd_arm	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				76	0	0	19	4	17.3913
ASCC2	0	genome.wustl.edu	37	22	30189452	30189452	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	30189452	30189452	G	A	SNP	ASCC2	ENST00000307790	human	ensembl	74_37	-1	known	missense	c.1816	p.P606S	0.108	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325				102	0	0	37	5	11.9048
GAL3ST1	0	genome.wustl.edu	37	22	30951991	30951991	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	30951991	30951991	G	A	SNP	GAL3ST1	ENST00000338911	human	ensembl	74_37	-1	known	missense	c.221	p.P74L	0.997	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST1	HGNC	ENSG00000128242				175	0	0	55	21	27.6316
C1QTNF6	0	genome.wustl.edu	37	22	37581422	37581422	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	37581422	37581422	G	T	SNP	C1QTNF6	ENST00000337843	human	ensembl	74_37	-1	known	missense	c.125	p.P42H	0.750	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF6	HGNC	ENSG00000133466				37	0	0	12	11	47.8261
SSTR3	0	genome.wustl.edu	37	22	37602837	37602837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	37602837	37602837	G	A	SNP	SSTR3	ENST00000328544	human	ensembl	74_37	-1	known	missense	c.1006	p.R336C	0.071	prints_Somatstn_rcpt_3	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_3,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR3	HGNC	ENSG00000183473				165	0	0	42	15	26.3158
CYTH4	0	genome.wustl.edu	37	22	37699399	37699399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	37699399	37699399	C	T	SNP	CYTH4	ENST00000248901	human	ensembl	74_37	+1	known	missense	c.652	p.R218C	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH4	HGNC	ENSG00000100055				122	0	0	20	8	28.5714
ELFN2	0	genome.wustl.edu	37	22	37769395	37769395	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	37769395	37769395	C	T	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	missense	c.2180	p.R727H	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				73	0	0	8	10	55.5556
SUN2	0	genome.wustl.edu	37	22	39146966	39146966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	39146966	39146966	G	A	SNP	SUN2	ENST00000216064	human	ensembl	74_37	-1	known	missense	c.361	p.R121C	0.001	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN2	HGNC	ENSG00000100242				74	0	0	7	5	41.6667
MGAT3	0	genome.wustl.edu	37	22	39883815	39883815	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	39883815	39883815	G	A	SNP	MGAT3	ENST00000341184	human	ensembl	74_37	+1	known	missense	c.463	p.A155T	0.000	NULL	pfam_Glyco_trans_17	-	no_errors	MGAT3	HGNC	ENSG00000128268				13	0	0	2	3	60
ALG12	0	genome.wustl.edu	37	22	50304114	50304114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	50304114	50304114	C	T	SNP	ALG12	ENST00000330817	human	ensembl	74_37	-1	known	missense	c.437	p.R146Q	1.000	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	ALG12	HGNC	ENSG00000182858				111	0	0	18	17	48.5714
LMF2	0	genome.wustl.edu	37	22	50942825	50942825	+	Silent	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	50942825	50942825	G	T	SNP	LMF2	ENST00000474879	human	ensembl	74_37	-1	known	silent	c.1662	p.P554	1.000	pfam_LMF	pfam_LMF	-	no_errors	LMF2	HGNC	ENSG00000100258				117	0	0	8	3	27.2727
CEP97	0	genome.wustl.edu	37	3	101445494	101445494	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	101445494	101445494	T	C	SNP	CEP97	ENST00000327230	human	ensembl	74_37	+1	known	missense	c.100	p.C34R	0.974	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CEP97	HGNC	ENSG00000182504				84	0	0	32	17	34.6939
SEMA5B	0	genome.wustl.edu	37	3	122646705	122646705	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	122646705	122646705	G	T	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	missense	c.944	p.A315D	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				122	0	0	51	21	29.1667
CCDC14	0	genome.wustl.edu	37	3	123667978	123667978	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	123667978	123667978	T	C	SNP	CCDC14	ENST00000488653	human	ensembl	74_37	-1	known	silent	c.498	p.S166	0.998	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455				14	0	0	8	7	46.6667
KALRN	0	genome.wustl.edu	37	3	124281775	124281775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	124281775	124281775	C	T	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.5015	p.T1672M	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				52	0	0	20	6	23.0769
ROPN1B	0	genome.wustl.edu	37	3	125701213	125701213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	125701213	125701213	C	T	SNP	ROPN1B	ENST00000251776	human	ensembl	74_37	+1	known	missense	c.497	p.T166M	0.991	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1B	HGNC	ENSG00000114547				174	0	0	53	26	32.9114
ALDH1L1	0	genome.wustl.edu	37	3	125844513	125844513	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	125844513	125844513	C	T	SNP	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	nonsense	c.1746	p.W582*	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908				156	0	0	47	14	22.9508
CHST13	0	genome.wustl.edu	37	3	126260961	126260961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	126260961	126260961	C	T	SNP	CHST13	ENST00000319340	human	ensembl	74_37	+1	known	missense	c.566	p.A189V	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST13	HGNC	ENSG00000180767				34	0	0	11	5	31.25
PLXNA1	0	genome.wustl.edu	37	3	126707619	126707619	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	126707619	126707619	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.183	p.G61	0.994	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				211	0	0	40	8	16.6667
GATA2	0	genome.wustl.edu	37	3	128200835	128200835	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	128200835	128200835	C	T	SNP	GATA2	ENST00000489987	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.450	-	-	-	no_errors	GATA2	HGNC	ENSG00000179348				54	0	0	8	6	42.8571
ASTE1	0	genome.wustl.edu	37	3	130732962	130732962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	130732962	130732962	C	T	SNP	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	missense	c.1979	p.R660Q	0.704	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533				119	0	0	58	27	31.7647
EPHB1	0	genome.wustl.edu	37	3	134898742	134898742	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	134898742	134898742	C	T	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	silent	c.1800	p.Y600	0.990	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				290	0	0	101	57	36.0759
ZBTB38	0	genome.wustl.edu	37	3	141164326	141164326	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	141164326	141164326	C	T	SNP	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	silent	c.3099	p.H1033	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311				76	0	0	37	16	30.1887
MRPS25	0	genome.wustl.edu	37	3	15094033	15094033	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	15094033	15094033	T	C	SNP	MRPS25	ENST00000253686	human	ensembl	74_37	-1	known	missense	c.437	p.Q146R	1.000	NULL	pfam_Ribosome/NADH_DH,superfamily_Thioredoxin-like_fold,smart_Ribosome/NADH_DH	-	no_errors	MRPS25	HGNC	ENSG00000131368				599	1	0.166667	158	76	32.4786
SERPINI1	0	genome.wustl.edu	37	3	167507093	167507093	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	167507093	167507093	G	C	SNP	SERPINI1	ENST00000295777	human	ensembl	74_37	+1	known	missense	c.177	p.M59I	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINI1	HGNC	ENSG00000163536				142	0	0	88	23	20.7207
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				141	0	0	84	36	30
KLHL24	0	genome.wustl.edu	37	3	183368863	183368863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	183368863	183368863	C	T	SNP	KLHL24	ENST00000242810	human	ensembl	74_37	+1	known	missense	c.719	p.A240V	0.004	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796				100	0	0	50	11	18.0328
PSMD2	0	genome.wustl.edu	37	3	184025728	184025728	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	184025728	184025728	C	T	SNP	PSMD2	ENST00000310118	human	ensembl	74_37	+1	known	silent	c.2349	p.S783	1.000	pirsf_26S_Psome_Rpn1	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	-	no_errors	PSMD2	HGNC	ENSG00000175166				150	0	0	45	29	39.1892
CHRD	0	genome.wustl.edu	37	3	184101309	184101309	+	Splice_Site	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	184101309	184101309	A	G	SNP	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	splice_site	c.1321-2	e12-2	1.000	-	-	-	no_errors	CHRD	HGNC	ENSG00000090539				101	0	0	30	8	21.0526
ZNF385D	0	genome.wustl.edu	37	3	21462764	21462764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	21462764	21462764	C	T	SNP	ZNF385D	ENST00000281523	human	ensembl	74_37	-1	known	missense	c.1130	p.R377Q	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385D	HGNC	ENSG00000151789				56	0	0	17	8	32
NEK10	0	genome.wustl.edu	37	3	27183068	27183068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	27183068	27183068	C	T	SNP	NEK10	ENST00000383771	human	ensembl	74_37	-1	known	missense	c.952	p.A318T	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK10	HGNC	ENSG00000163491				122	0	0	49	23	31.9444
NEK10	0	genome.wustl.edu	37	3	27346260	27346260	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	27346260	27346260	G	A	SNP	NEK10	ENST00000341435	human	ensembl	74_37	-1	known	nonsense	c.1006	p.Q336*	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK10	HGNC	ENSG00000163491				91	0	0	27	20	42.5532
CMTM7	0	genome.wustl.edu	37	3	32495741	32495741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	32495741	32495741	G	A	SNP	CMTM7	ENST00000334983	human	ensembl	74_37	+1	known	missense	c.523	p.V175I	0.002	NULL	pfam_Marvel	-	no_errors	CMTM7	HGNC	ENSG00000153551				113	0	0	24	14	36.8421
TRANK1	0	genome.wustl.edu	37	3	36898206	36898206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	36898206	36898206	C	T	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.2875	p.E959K	0.357	NULL	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				369	0	0	124	69	35.7513
SCN10A	0	genome.wustl.edu	37	3	38768331	38768331	+	Silent	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	38768331	38768331	G	T	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	silent	c.2853	p.L951	0.064	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				142	0	0	67	4	5.6338
CSRNP1	0	genome.wustl.edu	37	3	39188083	39188083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	39188083	39188083	G	A	SNP	CSRNP1	ENST00000273153	human	ensembl	74_37	-1	known	missense	c.91	p.R31C	0.019	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP1	HGNC	ENSG00000144655				16	0	0	3	3	50
SNRK	0	genome.wustl.edu	37	3	43389767	43389767	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	43389767	43389767	G	T	SNP	SNRK	ENST00000296088	human	ensembl	74_37	+1	known	missense	c.2016	p.L672F	0.198	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SNRK	HGNC	ENSG00000163788				207	1	0.480769	62	16	20.5128
LIMD1	0	genome.wustl.edu	37	3	45637565	45637565	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	45637565	45637565	G	A	SNP	LIMD1	ENST00000273317	human	ensembl	74_37	+1	known	silent	c.1194	p.E398	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMD1	HGNC	ENSG00000144791				77	0	0	22	9	29.0323
LIMD1	0	genome.wustl.edu	37	3	45677682	45677682	+	Silent	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	45677682	45677682	C	G	SNP	LIMD1	ENST00000273317	human	ensembl	74_37	+1	known	silent	c.1449	p.G483	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMD1	HGNC	ENSG00000144791				572	1	0.17452	202	40	16.5289
CCR3	0	genome.wustl.edu	37	3	46307111	46307111	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	46307111	46307111	C	A	SNP	CCR3	ENST00000545097	human	ensembl	74_37	+1	known	missense	c.525	p.S175R	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR3,prints_Chemokine_CCR1	-	no_errors	CCR3	HGNC	ENSG00000183625				118	0	0	65	37	36.2745
KLHL18	0	genome.wustl.edu	37	3	47378108	47378108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	47378108	47378108	C	T	SNP	KLHL18	ENST00000232766	human	ensembl	74_37	+1	known	missense	c.982	p.R328C	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL18	HGNC	ENSG00000114648				110	0	0	32	18	36
NME6	0	genome.wustl.edu	37	3	48336688	48336688	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	48336688	48336688	C	G	SNP	NME6	ENST00000421967	human	ensembl	74_37	-1	known	missense	c.295	p.A99P	1.000	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME6	HGNC	ENSG00000172113				75	0	0	27	6	18.1818
CELSR3	0	genome.wustl.edu	37	3	48698167	48698167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	48698167	48698167	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.1901	p.T634M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				111	0	0	30	18	37.5
LAMB2	0	genome.wustl.edu	37	3	49166186	49166186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	49166186	49166186	C	T	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	missense	c.1798	p.V600M	0.999	pfscan_Laminin_IV	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				229	0	0	51	23	31.0811
RNF123	0	genome.wustl.edu	37	3	49743092	49743092	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	49743092	49743092	G	A	SNP	RNF123	ENST00000327697	human	ensembl	74_37	+1	known	missense	c.2284	p.V762I	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068				69	0	0	23	3	11.5385
GMPPB	0	genome.wustl.edu	37	3	49760467	49760467	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	49760467	49760467	C	T	SNP	GMPPB	ENST00000308375	human	ensembl	74_37	-1	known	missense	c.340	p.D114N	1.000	pfam_NTP_transferase	pfam_NTP_transferase,pfam_Hexapep_transf	-	no_errors	GMPPB	HGNC	ENSG00000173540				120	1	0.826446	24	8	25
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				337	0	0	70	35	33.3333
MON1A	0	genome.wustl.edu	37	3	49949043	49949043	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	49949043	49949043	C	A	SNP	MON1A	ENST00000296473	human	ensembl	74_37	-1	known	missense	c.820	p.A274S	1.000	pfam_Vacuolar_fusion_protein_MON1,superfamily_Longin-like_dom,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,superfamily_Longin-like_dom,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1A	HGNC	ENSG00000164077				191	0	0	48	27	36
MON1A	0	genome.wustl.edu	37	3	49949063	49949063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	49949063	49949063	G	A	SNP	MON1A	ENST00000296473	human	ensembl	74_37	-1	known	missense	c.800	p.S267F	1.000	pfam_Vacuolar_fusion_protein_MON1,superfamily_Longin-like_dom,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,superfamily_Longin-like_dom,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1A	HGNC	ENSG00000164077				195	0	0	45	24	34.7826
DNAH1	0	genome.wustl.edu	37	3	52418887	52418887	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	52418887	52418887	C	A	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.8408	p.T2803N	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				41	0	0	18	2	10
ITIH3	0	genome.wustl.edu	37	3	52838744	52838744	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	52838744	52838744	G	A	SNP	ITIH3	ENST00000449956	human	ensembl	74_37	+1	known	missense	c.1867	p.A623T	0.024	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267				19	0	0	3	3	50
WNT5A	0	genome.wustl.edu	37	3	55513591	55513591	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	55513591	55513591	A	G	SNP	WNT5A	ENST00000264634	human	ensembl	74_37	-1	known	missense	c.142	p.S48P	1.000	NULL	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5A	HGNC	ENSG00000114251				385	1	0.259067	141	19	11.875
PTPRG	0	genome.wustl.edu	37	3	62189448	62189448	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	62189448	62189448	G	T	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.1979	p.R660M	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				34	0	0	14	6	30
THOC7	0	genome.wustl.edu	37	3	63825431	63825431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	63825431	63825431	C	T	SNP	THOC7	ENST00000295899	human	ensembl	74_37	-1	known	missense	c.38	p.R13H	1.000	pfam_THOC7/Mft1	pfam_THOC7/Mft1	-	no_errors	THOC7	HGNC	ENSG00000163634				60	0	0	37	14	27.451
PDZRN3	0	genome.wustl.edu	37	3	73450150	73450150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	73450150	73450150	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	missense	c.1177	p.A393T	0.966	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				153	0	0	75	38	33.6283
ROBO1	0	genome.wustl.edu	37	3	78796020	78796020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	78796020	78796020	G	A	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.530	p.S177L	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				66	0	0	40	10	20
SSUH2	0	genome.wustl.edu	37	3	8669438	8669438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	8669438	8669438	C	T	SNP	SSUH2	ENST00000544814	human	ensembl	74_37	-1	known	missense	c.620	p.R207H	1.000	superfamily_HSP_DnaJ_Cys-rich_dom	superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	SSUH2	HGNC	ENSG00000125046				90	0	0	30	15	33.3333
FILIP1L	0	genome.wustl.edu	37	3	99569681	99569681	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	99569681	99569681	C	A	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	missense	c.839	p.R280I	1.000	prints_Tropomyosin	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				471	0	0	197	70	26.2172
LOC101929271	0	genome.wustl.edu	37	4	100212135	100212135	+	RNA	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	100212135	100212135	A	G	SNP	LOC101929271	ENST00000509939	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-696N14.1	Clone_based_vega_gene	ENSG00000246090				135	0	0	88	27	23.4783
MANBA	0	genome.wustl.edu	37	4	103553381	103553381	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	103553381	103553381	C	T	SNP	MANBA	ENST00000226578	human	ensembl	74_37	-1	known	missense	c.2473	p.A825T	0.996	NULL	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323				183	0	0	86	21	19.6262
TET2	0	genome.wustl.edu	37	4	106157193	106157193	+	Silent	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	106157193	106157193	G	T	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	silent	c.2094	p.V698	0.001	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769				167	0	0	105	31	22.7941
RNF212	0	genome.wustl.edu	37	4	1107259	1107259	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	1107259	1107259	C	T	SNP	RNF212	ENST00000505730	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNF212	HGNC	ENSG00000178222				64	0	0	15	9	37.5
SPON2	0	genome.wustl.edu	37	4	1165659	1165659	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	1165659	1165659	C	T	SNP	SPON2	ENST00000290902	human	ensembl	74_37	-1	known	silent	c.201	p.A67	0.632	pfam_Spondin_N,pfscan_Spondin_N	pfam_Spondin_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Spondin_N,pfscan_Thrombospondin_1_rpt	-	no_errors	SPON2	HGNC	ENSG00000159674				297	0	0	29	22	43.1373
TRAM1L1	0	genome.wustl.edu	37	4	118005713	118005713	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	118005713	118005713	C	T	SNP	TRAM1L1	ENST00000310754	human	ensembl	74_37	-1	known	silent	c.837	p.S279	0.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599				103	0	0	84	18	17.6471
FAT4	0	genome.wustl.edu	37	4	126336826	126336826	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	126336826	126336826	C	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.6708	p.S2236	0.965	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				183	0	0	42	68	61.8182
INTU	0	genome.wustl.edu	37	4	128632225	128632225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	128632225	128632225	C	T	SNP	INTU	ENST00000335251	human	ensembl	74_37	+1	known	missense	c.2527	p.R843C	0.996	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066				67	0	0	18	26	59.0909
SMARCA5	0	genome.wustl.edu	37	4	144471250	144471250	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	144471250	144471250	A	T	SNP	SMARCA5	ENST00000283131	human	ensembl	74_37	+1	known	missense	c.3086	p.K1029M	1.000	NULL	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA5	HGNC	ENSG00000153147				31	0	0	16	6	27.2727
ZNF827	0	genome.wustl.edu	37	4	146824292	146824292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	146824292	146824292	G	A	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	missense	c.119	p.P40L	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612				175	0	0	85	24	22.0183
ARHGAP10	0	genome.wustl.edu	37	4	148744110	148744110	+	Splice_Site	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	148744110	148744110	T	C	SNP	ARHGAP10	ENST00000336498	human	ensembl	74_37	+1	known	splice_site	c.312+2	e3+2	1.000	-	-	-	no_errors	ARHGAP10	HGNC	ENSG00000071205				96	0	0	20	40	66.6667
PET112	0	genome.wustl.edu	37	4	152624954	152624954	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	152624954	152624954	C	T	SNP	PET112	ENST00000512306	human	ensembl	74_37	-1	putative	silent	c.1056	p.A352	0.000	NULL	pfam_Asn/Gln-tRNA_Trfase_suB/E_cat,tigrfam_Apn/Gln-ADT_bsu	-	no_errors	PET112	HGNC	ENSG00000059691				80	0	0	16	37	69.8113
FBXW7	0	genome.wustl.edu	37	4	153249385	153249385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	153249385	153249385	G	A	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	missense	c.1393	p.R465C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				275	0	0	150	56	27.1845
FHDC1	0	genome.wustl.edu	37	4	153881743	153881743	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	153881743	153881743	C	T	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	silent	c.690	p.G230	0.431	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				119	1	0.833333	23	45	66.1765
DCHS2	0	genome.wustl.edu	37	4	155312366	155312366	+	Silent	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	155312366	155312366	G	T	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	silent	c.84	p.A28	0.001	NULL	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				41	0	0	11	14	56
FGFR3	0	genome.wustl.edu	37	4	1803616	1803616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	1803616	1803616	C	T	SNP	FGFR3	ENST00000340107	human	ensembl	74_37	+1	known	missense	c.794	p.A265V	0.940	pirsf_FGF_rcpt_fam,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR3	HGNC	ENSG00000068078				95	0	0	16	9	36
TRAPPC11	0	genome.wustl.edu	37	4	184589196	184589196	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	184589196	184589196	C	T	SNP	TRAPPC11	ENST00000334690	human	ensembl	74_37	+1	known	silent	c.486	p.C162	0.899	NULL	pfam_Foie-gras_1,pfam_DUF1683_C	-	no_errors	TRAPPC11	HGNC	ENSG00000168538				232	0	0	84	27	24.3243
WHSC1	0	genome.wustl.edu	37	4	1961359	1961359	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	1961359	1961359	C	T	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	silent	c.3147	p.G1049	0.005	smart_AWS,pfscan_AWS	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				160	0	0	41	26	38.806
CCKAR	0	genome.wustl.edu	37	4	26483548	26483548	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	26483548	26483548	G	A	SNP	CCKAR	ENST00000295589	human	ensembl	74_37	-1	known	silent	c.999	p.N333	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394				168	0	0	61	31	33.6957
PCDH7	0	genome.wustl.edu	37	4	30724440	30724440	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	30724440	30724440	G	A	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.1396	p.V466M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				83	0	0	32	9	21.9512
TLR10	0	genome.wustl.edu	37	4	38776168	38776168	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	38776168	38776168	C	T	SNP	TLR10	ENST00000308973	human	ensembl	74_37	-1	known	silent	c.1044	p.T348	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123				135	1	0.735294	64	22	25.5814
SHISA3	0	genome.wustl.edu	37	4	42400102	42400102	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	42400102	42400102	T	C	SNP	SHISA3	ENST00000319234	human	ensembl	74_37	+1	known	missense	c.29	p.L10P	1.000	NULL	NULL	-	no_errors	SHISA3	HGNC	ENSG00000178343				22	0	0	10	5	33.3333
ATP8A1	0	genome.wustl.edu	37	4	42581864	42581864	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	42581864	42581864	C	T	SNP	ATP8A1	ENST00000381668	human	ensembl	74_37	-1	known	silent	c.966	p.R322	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A1	HGNC	ENSG00000124406				97	0	0	29	11	27.5
SPATA18	0	genome.wustl.edu	37	4	52945919	52945919	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	52945919	52945919	C	T	SNP	SPATA18	ENST00000295213	human	ensembl	74_37	+1	known	nonsense	c.1189	p.R397*	1.000	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071				339	0	0	147	64	30.3318
KDR	0	genome.wustl.edu	37	4	55968171	55968171	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	55968171	55968171	C	T	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	missense	c.2159	p.R720Q	0.991	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052				200	0	0	92	33	26.4
C4orf50	0	genome.wustl.edu	37	4	5981913	5981913	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	5981913	5981913	C	T	SNP	C4orf50	ENST00000531445	human	ensembl	74_37	-1	known	silent	c.1578	p.E526	0.066	NULL	NULL	-	no_errors	C4orf50	HGNC	ENSG00000181215				47	0	0	18	8	30.7692
JAKMIP1	0	genome.wustl.edu	37	4	6107634	6107634	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	6107634	6107634	G	A	SNP	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	missense	c.190	p.R64W	0.996	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				96	0	0	31	10	24.3902
WFS1	0	genome.wustl.edu	37	4	6302499	6302499	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	6302499	6302499	C	T	SNP	WFS1	ENST00000226760	human	ensembl	74_37	+1	known	missense	c.977	p.A326V	1.000	NULL	NULL	-	no_errors	WFS1	HGNC	ENSG00000109501				246	0	0	66	31	31.9588
PDE6B	0	genome.wustl.edu	37	4	656381	656381	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	656381	656381	C	T	SNP	PDE6B	ENST00000496514	human	ensembl	74_37	+1	known	silent	c.1806	p.R602	0.004	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256				130	0	0	30	9	23.0769
UGT2B28	0	genome.wustl.edu	37	4	70148363	70148363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	70148363	70148363	G	A	SNP	UGT2B28	ENST00000335568	human	ensembl	74_37	+1	known	missense	c.853	p.A285T	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B28	HGNC	ENSG00000135226				377	0	0	183	42	18.6667
PCGF3	0	genome.wustl.edu	37	4	727625	727625	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	727625	727625	C	G	SNP	PCGF3	ENST00000400151	human	ensembl	74_37	+1	putative	missense	c.156	p.S52R	0.000	NULL	NULL	-	no_errors	PCGF3	HGNC	ENSG00000185619				64	0	0	27	9	25
RASSF6	0	genome.wustl.edu	37	4	74442417	74442417	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	74442417	74442417	C	T	SNP	RASSF6	ENST00000342081	human	ensembl	74_37	-1	known	silent	c.849	p.P283	0.012	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF6	HGNC	ENSG00000169435				417	0	0	153	37	19.4737
GAK	0	genome.wustl.edu	37	4	860221	860221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	860221	860221	C	T	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	missense	c.2974	p.V992I	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950				112	0	0	19	8	29.6296
PTPN13	0	genome.wustl.edu	37	4	87691302	87691302	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	87691302	87691302	C	G	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	missense	c.4768	p.L1590V	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				41	0	0	24	7	22.5806
PDLIM5	0	genome.wustl.edu	37	4	95496845	95496845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	95496845	95496845	G	A	SNP	PDLIM5	ENST00000317968	human	ensembl	74_37	+1	known	missense	c.370	p.A124T	1.000	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM5	HGNC	ENSG00000163110				249	0	0	161	56	25.8065
SLC12A7	0	genome.wustl.edu	37	5	1075484	1075484	+	Splice_Site	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	1075484	1075484	A	G	SNP	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	splice_site	c.1967+2	e15+2	1.000	-	-	-	no_errors	SLC12A7	HGNC	ENSG00000113504				103	0	0	26	11	29.7297
KCNN2	0	genome.wustl.edu	37	5	113798824	113798824	+	Silent	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	113798824	113798824	T	G	SNP	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	silent	c.1080	p.G360	1.000	pfam_2pore_dom_K_chnl_dom	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709				249	0	0	123	45	26.7857
MEGF10	0	genome.wustl.edu	37	5	126746114	126746114	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	126746114	126746114	C	T	SNP	MEGF10	ENST00000274473	human	ensembl	74_37	+1	known	silent	c.951	p.G317	0.002	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794				70	0	0	29	7	19.4444
CHSY3	0	genome.wustl.edu	37	5	129244011	129244011	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	129244011	129244011	C	T	SNP	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	silent	c.1044	p.C348	0.998	pfam_Chond_GalNAc,pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108				68	0	0	33	13	28.2609
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				262	0	0	59	44	42.7184
DNAH5	0	genome.wustl.edu	37	5	13781052	13781052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	13781052	13781052	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.8837	p.R2946H	0.981	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				62	0	0	33	15	31.25
CTNNA1	0	genome.wustl.edu	37	5	138160446	138160446	+	Silent	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	138160446	138160446	T	A	SNP	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	silent	c.816	p.G272	0.958	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115				230	0	0	88	25	22.1239
SLC23A1	0	genome.wustl.edu	37	5	138718275	138718275	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	138718275	138718275	G	T	SNP	SLC23A1	ENST00000353963	human	ensembl	74_37	-1	known	missense	c.56	p.P19H	0.002	NULL	pfam_Xant/urac/vitC	-	no_errors	SLC23A1	HGNC	ENSG00000170482				111	0	0	28	14	33.3333
ANKHD1	0	genome.wustl.edu	37	5	139876355	139876355	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	139876355	139876355	G	A	SNP	ANKHD1	ENST00000297183	human	ensembl	74_37	+1	known	silent	c.2496	p.K832	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503				216	0	0	79	22	21.7822
SLC35A4	0	genome.wustl.edu	37	5	139947624	139947624	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	139947624	139947624	C	T	SNP	SLC35A4	ENST00000323146	human	ensembl	74_37	+1	known	silent	c.870	p.N290	0.295	pfam_Nuc_sug_transpt,pirsf_UDP/CMP-sugar_transptr	pfam_Nuc_sug_transpt,pfam_DMT,pirsf_UDP/CMP-sugar_transptr	-	no_errors	SLC35A4	HGNC	ENSG00000176087				78	0	0	37	13	26
PCDHA4	0	genome.wustl.edu	37	5	140188676	140188676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	140188676	140188676	G	A	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	missense	c.1904	p.R635H	0.912	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				236	0	0	59	41	41
PCDHA5	0	genome.wustl.edu	37	5	140202836	140202836	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	140202836	140202836	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	silent	c.1476	p.S492	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965				234	0	0	71	29	29
PCDHA9	0	genome.wustl.edu	37	5	140229691	140229691	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	140229691	140229691	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	+1	known	silent	c.1611	p.A537	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961				361	0	0	89	45	33.5821
PCDHB6	0	genome.wustl.edu	37	5	140530024	140530024	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	140530024	140530024	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	silent	c.186	p.G62	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				199	0	0	74	42	36.2069
PCDHGA4	0	genome.wustl.edu	37	5	140734826	140734826	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	140734826	140734826	T	G	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.59	p.L20R	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576				170	0	0	48	12	20
PCDHGB6	0	genome.wustl.edu	37	5	140789059	140789059	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	140789059	140789059	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	silent	c.1290	p.P430	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				160	0	0	41	20	32.7869
TRIO	0	genome.wustl.edu	37	5	14297342	14297342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	14297342	14297342	G	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.1338	p.M446I	1.000	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				78	0	0	27	16	37.2093
TCOF1	0	genome.wustl.edu	37	5	149756083	149756083	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	149756083	149756083	C	T	SNP	TCOF1	ENST00000451292	human	ensembl	74_37	+1	known	missense	c.2240	p.T747M	0.846	pfam_TCS_treacle	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814				51	0	0	21	11	34.375
NDST1	0	genome.wustl.edu	37	5	149901098	149901098	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	149901098	149901098	G	A	SNP	NDST1	ENST00000261797	human	ensembl	74_37	+1	known	silent	c.282	p.S94	0.043	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST1	HGNC	ENSG00000070614				205	0	0	68	33	32.6733
NDST1	0	genome.wustl.edu	37	5	149927851	149927851	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	149927851	149927851	C	T	SNP	NDST1	ENST00000261797	human	ensembl	74_37	+1	known	silent	c.2217	p.D739	0.068	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST1	HGNC	ENSG00000070614				127	0	0	31	9	22.5
FAT2	0	genome.wustl.edu	37	5	150932777	150932777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	150932777	150932777	C	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.4117	p.V1373I	0.930	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				126	0	0	52	23	30.6667
FBXL7	0	genome.wustl.edu	37	5	15936821	15936821	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	15936821	15936821	C	T	SNP	FBXL7	ENST00000504595	human	ensembl	74_37	+1	known	silent	c.1002	p.C334	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL7	HGNC	ENSG00000183580				35	0	0	13	6	31.5789
MARCH11	0	genome.wustl.edu	37	5	16067654	16067654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	16067654	16067654	G	A	SNP	MARCH11	ENST00000332432	human	ensembl	74_37	-1	known	missense	c.1135	p.R379W	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH11	HGNC	ENSG00000183654				322	0	0	111	57	33.9286
WWC1	0	genome.wustl.edu	37	5	167812251	167812251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	167812251	167812251	C	T	SNP	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	missense	c.265	p.R89W	1.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645				124	0	0	33	12	26.6667
SLIT3	0	genome.wustl.edu	37	5	168096822	168096822	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	168096822	168096822	G	A	SNP	SLIT3	ENST00000519560	human	ensembl	74_37	-1	known	silent	c.4302	p.C1434	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347				86	0	0	32	10	23.8095
KCNIP1	0	genome.wustl.edu	37	5	169931586	169931586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	169931586	169931586	G	A	SNP	KCNIP1	ENST00000411494	human	ensembl	74_37	+1	known	missense	c.10	p.V4I	1.000	NULL	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	KCNIP1	HGNC	ENSG00000182132				148	0	0	57	16	21.9178
STC2	0	genome.wustl.edu	37	5	172744927	172744927	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	172744927	172744927	C	T	SNP	STC2	ENST00000265087	human	ensembl	74_37	-1	known	missense	c.832	p.G278S	0.001	NULL	pfam_Stanniocalcin	-	no_errors	STC2	HGNC	ENSG00000113739				235	0	0	63	25	28.4091
HRH2	0	genome.wustl.edu	37	5	175110591	175110591	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	175110591	175110591	G	A	SNP	HRH2	ENST00000377291	human	ensembl	74_37	+1	known	missense	c.355	p.A119T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT6_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H2_rcpt,prints_GPCR_Rhodpsn,prints_5HT6_rcpt	-	no_errors	HRH2	HGNC	ENSG00000113749				97	0	0	37	13	26
GPRIN1	0	genome.wustl.edu	37	5	176025084	176025084	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	176025084	176025084	C	T	SNP	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	silent	c.1752	p.P584	0.000	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258				252	0	0	67	32	32.3232
DOK3	0	genome.wustl.edu	37	5	176931829	176931829	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	176931829	176931829	T	C	SNP	DOK3	ENST00000357198	human	ensembl	74_37	-1	known	missense	c.728	p.D243G	0.948	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK3	HGNC	ENSG00000146094				118	0	0	27	10	27.027
ZFP2	0	genome.wustl.edu	37	5	178359583	178359583	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	178359583	178359583	A	G	SNP	ZFP2	ENST00000361362	human	ensembl	74_37	+1	known	silent	c.1269	p.S423	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP2	HGNC	ENSG00000198939				111	0	0	56	5	8.19672
GRM6	0	genome.wustl.edu	37	5	178413361	178413361	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	178413361	178413361	A	C	SNP	GRM6	ENST00000231188	human	ensembl	74_37	-1	known	missense	c.1894	p.F632V	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM6	HGNC	ENSG00000113262				80	0	0	28	6	17.6471
ADAMTS2	0	genome.wustl.edu	37	5	178557042	178557042	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	178557042	178557042	G	T	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	missense	c.2348	p.A783D	0.692	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				118	0	0	29	18	38.2979
ADAMTS2	0	genome.wustl.edu	37	5	178634558	178634558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	178634558	178634558	C	T	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	missense	c.847	p.G283R	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				324	0	0	78	31	28.4404
RUFY1	0	genome.wustl.edu	37	5	179036539	179036539	+	RNA	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	179036539	179036539	A	G	SNP	RUFY1	ENST00000508797	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RUFY1	HGNC	ENSG00000176783				18	0	0	6	5	45.4545
GNB2L1	0	genome.wustl.edu	37	5	180664659	180664659	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	180664659	180664659	T	C	SNP	GNB2L1	ENST00000512805	human	ensembl	74_37	-1	known	missense	c.838	p.K280E	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB2L1	HGNC	ENSG00000204628				189	0	0	42	23	35.3846
GUSBP1	0	genome.wustl.edu	37	5	21459625	21459625	+	RNA	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	21459625	21459625	G	C	SNP	GUSBP1	ENST00000508973	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GUSBP1	HGNC	ENSG00000183666				239	0	0	61	15	19.7368
CDH10	0	genome.wustl.edu	37	5	24491847	24491847	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	24491847	24491847	C	A	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.1714	p.D572Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				43	0	0	34	17	33.3333
IRX2	0	genome.wustl.edu	37	5	2749021	2749021	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	2749021	2749021	C	T	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	silent	c.801	p.E267	0.993	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				59	0	0	12	3	20
PDZD2	0	genome.wustl.edu	37	5	32088213	32088213	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	32088213	32088213	C	T	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	silent	c.4659	p.G1553	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				142	0	0	64	23	26.4368
PDZD2	0	genome.wustl.edu	37	5	32089364	32089364	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	32089364	32089364	T	C	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.5810	p.V1937A	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				179	0	0	56	24	30
RICTOR	0	genome.wustl.edu	37	5	38958851	38958851	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	38958851	38958851	A	G	SNP	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	missense	c.2261	p.L754S	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				101	0	0	54	15	21.7391
ADAMTS16	0	genome.wustl.edu	37	5	5232558	5232558	+	Silent	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	5232558	5232558	T	G	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	silent	c.1779	p.S593	0.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				185	0	0	68	36	34.6154
HSPB3	0	genome.wustl.edu	37	5	53751772	53751772	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	53751772	53751772	G	A	SNP	HSPB3	ENST00000302005	human	ensembl	74_37	+1	known	silent	c.153	p.A51	0.000	superfamily_HSP20-like_chaperone	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	HSPB3	HGNC	ENSG00000169271				135	0	0	70	4	5.40541
IL31RA	0	genome.wustl.edu	37	5	55203251	55203251	+	Silent	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	55203251	55203251	C	G	SNP	IL31RA	ENST00000447346	human	ensembl	74_37	+1	known	silent	c.1317	p.G439	0.538	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL31RA	HGNC	ENSG00000164509				92	0	0	38	5	11.6279
MAP3K1	0	genome.wustl.edu	37	5	56177584	56177584	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	56177584	56177584	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	74_37	+1	novel	missense	c.2557	p.R853C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015				158	0	0	70	28	28.5714
MAP1B	0	genome.wustl.edu	37	5	71495988	71495988	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	71495988	71495988	C	A	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.6806	p.A2269E	0.943	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				304	0	0	114	43	27.3885
ADCY2	0	genome.wustl.edu	37	5	7520977	7520977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	7520977	7520977	G	A	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	missense	c.535	p.A179T	0.006	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				120	0	0	64	22	25.5814
F2RL2	0	genome.wustl.edu	37	5	75913544	75913544	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	75913544	75913544	A	T	SNP	F2RL2	ENST00000296641	human	ensembl	74_37	-1	known	missense	c.988	p.Y330N	0.021	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Prot_act_rcpt_3,prints_Protea_act_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Prot_act_rcpt_3,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	F2RL2	HGNC	ENSG00000164220				73	0	0	36	17	32.0755
CMYA5	0	genome.wustl.edu	37	5	79027051	79027051	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	79027051	79027051	A	G	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.2463	p.Q821	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				190	0	0	43	22	33.8462
THBS4	0	genome.wustl.edu	37	5	79355673	79355673	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	79355673	79355673	G	T	SNP	THBS4	ENST00000350881	human	ensembl	74_37	+1	known	missense	c.932	p.G311V	1.000	smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296				330	0	0	110	39	26.1745
RASGRF2	0	genome.wustl.edu	37	5	80363869	80363869	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	80363869	80363869	T	C	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	silent	c.414	p.I138	0.969	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				118	0	0	70	31	30.6931
RASGRF2	0	genome.wustl.edu	37	5	80382675	80382675	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	80382675	80382675	C	T	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	silent	c.1293	p.S431	0.998	superfamily_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				67	0	0	31	14	31.1111
SIM1	0	genome.wustl.edu	37	6	100895166	100895166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	100895166	100895166	C	T	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.976	p.V326I	1.000	pfam_PAS_fold_3,superfamily_PAS,smart_PAC	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				88	0	0	17	9	34.6154
BEND3	0	genome.wustl.edu	37	6	107391957	107391957	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	107391957	107391957	C	T	SNP	BEND3	ENST00000369042	human	ensembl	74_37	-1	known	silent	c.438	p.S146	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409				261	0	0	84	34	28.8136
FOXO3	0	genome.wustl.edu	37	6	108985003	108985003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	108985003	108985003	C	T	SNP	FOXO3	ENST00000343882	human	ensembl	74_37	+1	known	missense	c.967	p.R323C	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO3	HGNC	ENSG00000118689				75	0	0	46	3	6.12245
SLC16A10	0	genome.wustl.edu	37	6	111498611	111498611	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	111498611	111498611	G	T	SNP	SLC16A10	ENST00000368851	human	ensembl	74_37	+1	known	missense	c.685	p.G229C	0.996	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394				103	0	0	59	16	21.3333
NKAIN2	0	genome.wustl.edu	37	6	124125394	124125394	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	124125394	124125394	C	T	SNP	NKAIN2	ENST00000368417	human	ensembl	74_37	+1	known	nonsense	c.49	p.Q17*	1.000	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN2	HGNC	ENSG00000188580				195	0	0	56	24	30
TMEM244	0	genome.wustl.edu	37	6	130164727	130164727	+	Silent	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	130164727	130164727	C	A	SNP	TMEM244	ENST00000368143	human	ensembl	74_37	-1	known	silent	c.141	p.L47	1.000	pfam_Integral_membrane_SYS1-rel	pfam_Integral_membrane_SYS1-rel	-	no_errors	TMEM244	HGNC	ENSG00000203756				243	0	0	80	36	31.0345
ENSG00000231329	0	genome.wustl.edu	37	6	139487278	139487278	+	RNA	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	139487278	139487278	T	C	SNP	ENSG00000231329	ENST00000588529	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	RP1-225E12.2	Clone_based_vega_gene	ENSG00000231329				20	0	0	12	4	25
PLAGL1	0	genome.wustl.edu	37	6	144269239	144269239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	144269239	144269239	G	A	SNP	PLAGL1	ENST00000354765	human	ensembl	74_37	-1	known	missense	c.35	p.T12M	0.014	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL1	HGNC	ENSG00000118495				65	0	0	38	12	24
SHPRH	0	genome.wustl.edu	37	6	146256278	146256278	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	146256278	146256278	C	T	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	missense	c.2755	p.E919K	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				61	0	0	39	11	22
UST	0	genome.wustl.edu	37	6	149285691	149285691	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	149285691	149285691	C	T	SNP	UST	ENST00000367463	human	ensembl	74_37	+1	known	missense	c.673	p.R225C	1.000	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	UST	HGNC	ENSG00000111962				90	0	0	29	8	21.6216
AKAP12	0	genome.wustl.edu	37	6	151674332	151674332	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	151674332	151674332	G	A	SNP	AKAP12	ENST00000253332	human	ensembl	74_37	+1	known	silent	c.4806	p.Q1602	0.000	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016				91	0	0	40	18	31.0345
CCDC170	0	genome.wustl.edu	37	6	151857472	151857472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	151857472	151857472	C	T	SNP	CCDC170	ENST00000367290	human	ensembl	74_37	+1	known	missense	c.77	p.S26L	0.462	NULL	superfamily_Prefoldin,superfamily_Smac_DIABLO-like	-	no_errors	CCDC170	HGNC	ENSG00000120262				136	0	0	40	23	36.5079
IPCEF1	0	genome.wustl.edu	37	6	154542444	154542444	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	154542444	154542444	A	G	SNP	IPCEF1	ENST00000367220	human	ensembl	74_37	-1	known	silent	c.339	p.H113	0.998	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	IPCEF1	HGNC	ENSG00000074706				86	0	0	31	11	26.1905
EZR	0	genome.wustl.edu	37	6	159206516	159206516	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	159206516	159206516	T	C	SNP	EZR	ENST00000337147	human	ensembl	74_37	-1	known	missense	c.292	p.T98A	1.000	pirsf_ERM,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	EZR	HGNC	ENSG00000092820				129	0	0	42	28	40
FNDC1	0	genome.wustl.edu	37	6	159655397	159655397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	159655397	159655397	G	A	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.3853	p.A1285T	0.845	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				59	0	0	25	6	19.3548
SLC22A2	0	genome.wustl.edu	37	6	160679635	160679635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	160679635	160679635	C	T	SNP	SLC22A2	ENST00000366953	human	ensembl	74_37	-1	known	missense	c.155	p.R52Q	0.970	pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A2	HGNC	ENSG00000112499				162	0	0	49	21	30
MLLT4	0	genome.wustl.edu	37	6	168352841	168352841	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	168352841	168352841	C	T	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	missense	c.4786	p.R1596C	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				286	0	0	77	38	33.0435
THBS2	0	genome.wustl.edu	37	6	169622298	169622298	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	169622298	169622298	C	T	SNP	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	silent	c.3267	p.P1089	0.124	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl_sf	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340				146	0	0	47	26	35.6164
TBP	0	genome.wustl.edu	37	6	170871061	170871061	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	170871061	170871061	G	A	SNP	TBP	ENST00000230354	human	ensembl	74_37	+1	known	silent	c.237	p.Q79	0.988	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592				73	0	0	30	3	9.09091
ALDH5A1	0	genome.wustl.edu	37	6	24520684	24520684	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	24520684	24520684	G	A	SNP	ALDH5A1	ENST00000348925	human	ensembl	74_37	+1	known	missense	c.965	p.G322D	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	-	no_errors	ALDH5A1	HGNC	ENSG00000112294				222	0	0	38	38	50
HIST1H1A	0	genome.wustl.edu	37	6	26017792	26017792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	26017792	26017792	G	A	SNP	HIST1H1A	ENST00000244573	human	ensembl	74_37	-1	known	missense	c.169	p.R57C	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1A	HGNC	ENSG00000124610				134	0	0	53	4	7.01754
NKAPL	0	genome.wustl.edu	37	6	28228207	28228207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	28228207	28228207	G	A	SNP	NKAPL	ENST00000343684	human	ensembl	74_37	+1	known	missense	c.1058	p.R353Q	0.996	pfam_DUF926	pfam_DUF926	-	no_errors	NKAPL	HGNC	ENSG00000189134				193	0	0	92	31	25.2033
PGBD1	0	genome.wustl.edu	37	6	28269950	28269950	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	28269950	28269950	T	C	SNP	PGBD1	ENST00000259883	human	ensembl	74_37	+1	known	silent	c.2319	p.N773	0.982	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,pfscan_SRCR,pfscan_Tscrpt_reg_SCAN	-	no_errors	PGBD1	HGNC	ENSG00000137338				106	0	0	45	19	29.6875
OR2W1	0	genome.wustl.edu	37	6	29012665	29012665	+	Silent	SNP	A	A	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	29012665	29012665	A	C	SNP	OR2W1	ENST00000377175	human	ensembl	74_37	-1	known	silent	c.288	p.G96	0.608	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2W1	HGNC	ENSG00000204704				68	0	0	54	18	25
OR2H2	0	genome.wustl.edu	37	6	29556131	29556131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	29556131	29556131	G	A	SNP	OR2H2	ENST00000383640	human	ensembl	74_37	+1	known	missense	c.410	p.R137H	0.023	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2H2	HGNC	ENSG00000204657				197	0	0	85	39	31.4516
HLA-F	0	genome.wustl.edu	37	6	29692855	29692855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	29692855	29692855	G	A	SNP	HLA-F	ENST00000259951	human	ensembl	74_37	+1	known	missense	c.658	p.A220T	0.870	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-F	HGNC	ENSG00000204642				136	0	0	45	11	19.6429
TRIM10	0	genome.wustl.edu	37	6	30121852	30121852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	30121852	30121852	G	A	SNP	TRIM10	ENST00000449742	human	ensembl	74_37	-1	known	missense	c.1340	p.A447V	0.773	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM10	HGNC	ENSG00000204613				73	0	0	32	13	28.8889
HLA-L	0	genome.wustl.edu	37	6	30227710	30227710	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	30227710	30227710	C	T	SNP	HLA-L	ENST00000463348	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HLA-L	HGNC	ENSG00000243753				64	0	0	24	8	25
ABCF1	0	genome.wustl.edu	37	6	30550906	30550906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	30550906	30550906	G	A	SNP	ABCF1	ENST00000326195	human	ensembl	74_37	+1	known	missense	c.856	p.V286M	0.997	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574				206	0	0	72	31	30.0971
ABCF1	0	genome.wustl.edu	37	6	30552049	30552049	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	30552049	30552049	C	T	SNP	ABCF1	ENST00000326195	human	ensembl	74_37	+1	known	missense	c.1183	p.R395W	0.068	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574				141	0	0	42	24	36.3636
TCF19	0	genome.wustl.edu	37	6	31127272	31127272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	31127272	31127272	G	A	SNP	TCF19	ENST00000376255	human	ensembl	74_37	+1	known	missense	c.26	p.R9H	1.000	superfamily_SMAD_FHA_domain	pfam_FHA_dom,pfam_Znf_PHD-finger,superfamily_SMAD_FHA_domain,superfamily_Znf_FYVE_PHD,smart_FHA_dom,smart_Znf_PHD,pfscan_FHA_dom	-	no_errors	TCF19	HGNC	ENSG00000137310				11	0	0	6	4	40
MICB	0	genome.wustl.edu	37	6	31474171	31474171	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	31474171	31474171	C	T	SNP	MICB	ENST00000252229	human	ensembl	74_37	+1	known	nonsense	c.577	p.R193*	0.001	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	MICB	HGNC	ENSG00000204516				87	0	0	41	3	6.81818
PRRC2A	0	genome.wustl.edu	37	6	31599904	31599904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	31599904	31599904	C	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.3454	p.R1152C	0.969	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				137	0	0	36	15	29.4118
PRRC2A	0	genome.wustl.edu	37	6	31600251	31600251	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	31600251	31600251	C	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	silent	c.3801	p.A1267	0.916	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				211	0	0	41	21	33.871
PRRC2A	0	genome.wustl.edu	37	6	31600727	31600727	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	31600727	31600727	G	C	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.4277	p.G1426A	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				55	0	0	24	7	22.5806
PRRC2A	0	genome.wustl.edu	37	6	31602658	31602658	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	31602658	31602658	A	G	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	silent	c.5064	p.G1688	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				157	0	0	59	14	19.1781
ABHD16A	0	genome.wustl.edu	37	6	31655422	31655422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	31655422	31655422	C	T	SNP	ABHD16A	ENST00000395952	human	ensembl	74_37	-1	known	missense	c.1543	p.V515M	1.000	NULL	pfam_AB_hydrolase_1	-	no_errors	ABHD16A	HGNC	ENSG00000204427				105	0	0	39	19	32.7586
TNXB	0	genome.wustl.edu	37	6	32023769	32023769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	32023769	32023769	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.8326	p.R2776W	0.991	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				130	0	0	43	12	21.8182
B3GALT4	0	genome.wustl.edu	37	6	33246260	33246260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	33246260	33246260	C	T	SNP	B3GALT4	ENST00000451237	human	ensembl	74_37	+1	known	missense	c.1064	p.A355V	0.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT4	HGNC	ENSG00000235863				377	0	0	80	33	29.2035
RGL2	0	genome.wustl.edu	37	6	33264042	33264042	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	33264042	33264042	C	G	SNP	RGL2	ENST00000497454	human	ensembl	74_37	-1	known	missense	c.531	p.E177D	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441				369	0	0	97	25	20.4918
KIFC1	0	genome.wustl.edu	37	6	33371779	33371779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	33371779	33371779	G	A	SNP	KIFC1	ENST00000428849	human	ensembl	74_37	+1	known	missense	c.629	p.R210H	0.044	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649				281	0	0	67	27	28.7234
ITPR3	0	genome.wustl.edu	37	6	33653429	33653429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	33653429	33653429	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.5492	p.A1831V	0.959	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				79	0	0	28	16	36.3636
SLC26A8	0	genome.wustl.edu	37	6	35967813	35967813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	35967813	35967813	G	A	SNP	SLC26A8	ENST00000355574	human	ensembl	74_37	-1	known	missense	c.401	p.S134L	0.979	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A8	HGNC	ENSG00000112053				279	1	0.357143	97	32	24.8062
DNAH8	0	genome.wustl.edu	37	6	38759438	38759438	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	38759438	38759438	G	A	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.2238	p.L746	0.980	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				78	0	0	32	13	28.8889
DAAM2	0	genome.wustl.edu	37	6	39869799	39869799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	39869799	39869799	C	T	SNP	DAAM2	ENST00000274867	human	ensembl	74_37	+1	known	missense	c.3193	p.R1065W	1.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DAAM2	HGNC	ENSG00000146122				79	0	0	23	5	17.8571
TFEB	0	genome.wustl.edu	37	6	41652368	41652368	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	41652368	41652368	C	A	SNP	TFEB	ENST00000230323	human	ensembl	74_37	-1	known	missense	c.1400	p.S467I	1.000	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFEB	HGNC	ENSG00000112561				163	0	0	43	5	10.4167
MED20	0	genome.wustl.edu	37	6	41877053	41877053	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	41877053	41877053	A	G	SNP	MED20	ENST00000265350	human	ensembl	74_37	-1	known	missense	c.377	p.V126A	1.000	pfam_Mediator_Med20	pfam_Mediator_Med20	-	no_errors	MED20	HGNC	ENSG00000124641				204	0	0	72	29	28.7129
TAF8	0	genome.wustl.edu	37	6	42023690	42023690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	42023690	42023690	G	A	SNP	TAF8	ENST00000372982	human	ensembl	74_37	+1	known	missense	c.302	p.G101D	1.000	pfam_BTP,superfamily_Histone-fold,smart_BTP	pfam_BTP,pfam_TFIID_su8_C,superfamily_Histone-fold,smart_BTP	-	no_errors	TAF8	HGNC	ENSG00000137413				110	0	0	27	11	28.9474
ABCC10	0	genome.wustl.edu	37	6	43412000	43412000	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	43412000	43412000	C	T	SNP	ABCC10	ENST00000372530	human	ensembl	74_37	+1	known	silent	c.2598	p.G866	0.022	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC10	HGNC	ENSG00000124574				91	0	0	29	5	14.7059
GTPBP2	0	genome.wustl.edu	37	6	43589437	43589437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	43589437	43589437	G	A	SNP	GTPBP2	ENST00000307126	human	ensembl	74_37	-1	known	missense	c.1723	p.R575W	1.000	superfamily_Transl_elong_EF1A/Init_IF2_C	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel	-	no_errors	GTPBP2	HGNC	ENSG00000172432				193	0	0	58	32	35.5556
SUPT3H	0	genome.wustl.edu	37	6	44922295	44922295	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	44922295	44922295	C	A	SNP	SUPT3H	ENST00000371460	human	ensembl	74_37	-1	known	missense	c.663	p.E221D	1.000	NULL	pfam_TFIID-18,superfamily_Histone-fold	-	no_errors	SUPT3H	HGNC	ENSG00000196284				138	0	0	57	27	32.1429
DST	0	genome.wustl.edu	37	6	56374631	56374631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	56374631	56374631	C	T	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.18728	p.R6243H	1.000	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				84	0	0	45	8	15.0943
DST	0	genome.wustl.edu	37	6	56470972	56470972	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	56470972	56470972	A	G	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.8355	p.G2785	0.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				16	0	0	17	4	19.0476
BAI3	0	genome.wustl.edu	37	6	69772890	69772890	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	69772890	69772890	G	A	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.2398	p.D800N	0.998	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				134	0	0	53	13	19.697
IBTK	0	genome.wustl.edu	37	6	82909923	82909923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	82909923	82909923	C	T	SNP	IBTK	ENST00000306270	human	ensembl	74_37	-1	known	missense	c.2960	p.R987H	1.000	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700				252	0	0	136	52	27.6596
HTR1E	0	genome.wustl.edu	37	6	87725581	87725581	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	87725581	87725581	C	T	SNP	HTR1E	ENST00000305344	human	ensembl	74_37	+1	known	missense	c.529	p.H177Y	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1E	HGNC	ENSG00000168830				170	0	0	47	30	38.961
ORC3	0	genome.wustl.edu	37	6	88318943	88318943	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	88318943	88318943	A	G	SNP	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	missense	c.709	p.S237G	1.000	pfam_ORC3	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336				111	0	0	57	31	35.2273
BACH2	0	genome.wustl.edu	37	6	90661243	90661243	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	90661243	90661243	G	A	SNP	BACH2	ENST00000257749	human	ensembl	74_37	-1	known	silent	c.582	p.A194	0.002	NULL	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182				134	0	0	53	22	29.3333
EPHA7	0	genome.wustl.edu	37	6	93956681	93956681	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	93956681	93956681	C	T	SNP	EPHA7	ENST00000369303	human	ensembl	74_37	-1	known	missense	c.2555	p.G852D	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333				58	0	0	37	15	28.8462
GIGYF1	0	genome.wustl.edu	37	7	100279976	100279976	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	100279976	100279976	C	T	SNP	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	silent	c.2730	p.L910	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830				94	0	0	27	16	37.2093
LRRC17	0	genome.wustl.edu	37	7	102574941	102574941	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	102574941	102574941	G	C	SNP	LRRC17	ENST00000339431	human	ensembl	74_37	+1	known	missense	c.581	p.S194T	0.287	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606				157	0	0	80	22	21.5686
SLC26A5	0	genome.wustl.edu	37	7	103018957	103018957	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	103018957	103018957	G	A	SNP	SLC26A5	ENST00000306312	human	ensembl	74_37	-1	known	missense	c.1721	p.A574V	1.000	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A5	HGNC	ENSG00000170615				203	0	0	102	25	19.685
SRPK2	0	genome.wustl.edu	37	7	104766779	104766779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	104766779	104766779	C	T	SNP	SRPK2	ENST00000393651	human	ensembl	74_37	-1	known	missense	c.1831	p.A611T	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250				158	0	0	55	11	16.6667
RNF148	0	genome.wustl.edu	37	7	122342670	122342670	+	Silent	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	122342670	122342670	T	A	SNP	RNF148	ENST00000434824	human	ensembl	74_37	-1	known	silent	c.135	p.T45	0.676	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF148	HGNC	ENSG00000235631				64	0	0	35	18	33.9623
GRM8	0	genome.wustl.edu	37	7	126079102	126079102	+	RNA	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	126079102	126079102	A	T	SNP	GRM8	ENST00000489939	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.680	-	-	-	no_errors	GRM8	HGNC	ENSG00000179603				93	0	0	36	20	35.7143
LRRC4	0	genome.wustl.edu	37	7	127670327	127670327	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	127670327	127670327	C	G	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.367	p.A123P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				144	0	0	45	17	27.4194
SND1	0	genome.wustl.edu	37	7	127729669	127729669	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	127729669	127729669	C	T	SNP	SND1	ENST00000354725	human	ensembl	74_37	+1	known	silent	c.2547	p.G849	0.409	pfam_Staphylococal_nuclease_OB-fold,superfamily_Staphylococal_nuclease_OB-fold,pirsf_Silence_cplx_Nase-comp_TudorSN	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				127	0	0	38	13	25.4902
FLNC	0	genome.wustl.edu	37	7	128495311	128495311	+	Silent	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	128495311	128495311	G	T	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	silent	c.7194	p.V2398	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				270	0	0	52	31	37.3494
FLNC	0	genome.wustl.edu	37	7	128497221	128497221	+	Silent	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	128497221	128497221	C	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	silent	c.7611	p.A2537	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				413	1	0.241546	73	46	38.6555
PLXNA4	0	genome.wustl.edu	37	7	131865401	131865401	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	131865401	131865401	A	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.3583	p.S1195T	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				83	0	0	30	9	23.0769
AKR1B10	0	genome.wustl.edu	37	7	134215432	134215432	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	134215432	134215432	C	T	SNP	AKR1B10	ENST00000359579	human	ensembl	74_37	+1	known	missense	c.104	p.A35V	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B10	HGNC	ENSG00000198074				175	0	0	60	30	33.3333
ETV1	0	genome.wustl.edu	37	7	13949284	13949284	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	13949284	13949284	T	G	SNP	ETV1	ENST00000405218	human	ensembl	74_37	-1	known	missense	c.913	p.T305P	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV1	HGNC	ENSG00000006468				217	0	0	76	25	24.7525
CTAGE4	0	genome.wustl.edu	37	7	143882922	143882922	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	143882922	143882922	A	G	SNP	CTAGE4	ENST00000486333	human	ensembl	74_37	+1	known	missense	c.2326	p.T776A	0.311	NULL	superfamily_tRNA-bd_arm	-	no_errors	CTAGE4	HGNC	ENSG00000225932				20	0	0	23	5	17.8571
CNTNAP2	0	genome.wustl.edu	37	7	147675067	147675067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	147675067	147675067	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.2369	p.R790H	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				91	0	0	27	20	42.5532
ZNF862	0	genome.wustl.edu	37	7	149558011	149558011	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	149558011	149558011	G	A	SNP	ZNF862	ENST00000223210	human	ensembl	74_37	+1	known	missense	c.1762	p.V588M	0.983	NULL	pfam_Krueppel-associated_box,pfam_HATC_dom_C,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479				54	0	0	14	9	39.1304
ASB10	0	genome.wustl.edu	37	7	150873302	150873302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	150873302	150873302	C	T	SNP	ASB10	ENST00000422024	human	ensembl	74_37	-1	known	missense	c.1436	p.R479H	0.995	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB10	HGNC	ENSG00000146926				92	0	0	24	9	27.2727
KMT2C	0	genome.wustl.edu	37	7	151917681	151917681	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	151917681	151917681	G	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	silent	c.3639	p.S1213	0.994	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				79	0	0	39	16	29.0909
HTR5A	0	genome.wustl.edu	37	7	154863212	154863212	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	154863212	154863212	C	T	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	silent	c.603	p.A201	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219				82	0	0	28	5	15.1515
MAD1L1	0	genome.wustl.edu	37	7	2255800	2255800	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	2255800	2255800	C	T	SNP	MAD1L1	ENST00000265854	human	ensembl	74_37	-1	known	silent	c.801	p.A267	0.000	pfam_Mad1	pfam_Mad1	-	no_errors	MAD1L1	HGNC	ENSG00000002822				178	0	0	51	39	43.3333
HOXA9	0	genome.wustl.edu	37	7	27203381	27203381	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	27203381	27203381	T	A	SNP	HOXA9	ENST00000343483	human	ensembl	74_37	-1	known	missense	c.660	p.E220D	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Hox9,pfscan_Homeobox_dom	pfam_Hox9_activation_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Hox9,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA9	HGNC	ENSG00000078399				208	0	0	68	19	21.8391
CCDC129	0	genome.wustl.edu	37	7	31683217	31683217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	31683217	31683217	G	A	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	missense	c.2311	p.A771T	0.000	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				152	0	0	60	18	23.0769
NPC1L1	0	genome.wustl.edu	37	7	44555406	44555406	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	44555406	44555406	G	A	SNP	NPC1L1	ENST00000289547	human	ensembl	74_37	-1	known	silent	c.3873	p.Y1291	0.939	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520				128	0	0	31	15	32.6087
ABCA13	0	genome.wustl.edu	37	7	48431646	48431646	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	48431646	48431646	A	G	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.11783	p.D3928G	0.016	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				112	0	0	43	17	28.3333
TNRC18	0	genome.wustl.edu	37	7	5352370	5352370	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	5352370	5352370	C	A	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	missense	c.8152	p.G2718C	0.376	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				51	0	0	14	7	33.3333
TNRC18	0	genome.wustl.edu	37	7	5401291	5401291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	5401291	5401291	C	T	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	missense	c.4595	p.R1532Q	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				15	0	0	3	2	40
FBXL18	0	genome.wustl.edu	37	7	5540810	5540810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	5540810	5540810	G	A	SNP	FBXL18	ENST00000453700	human	ensembl	74_37	-1	known	missense	c.1090	p.R364C	0.986	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL18	HGNC	ENSG00000155034				75	0	0	20	13	39.3939
ZNF479	0	genome.wustl.edu	37	7	57188817	57188817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	57188817	57188817	C	T	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	missense	c.305	p.G102D	0.013	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				181	0	0	59	29	32.9545
ZNF107	0	genome.wustl.edu	37	7	64167492	64167492	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	64167492	64167492	A	G	SNP	ZNF107	ENST00000344930	human	ensembl	74_37	+1	known	silent	c.810	p.K270	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF107	HGNC	ENSG00000196247				110	0	0	41	20	32.7869
DAGLB	0	genome.wustl.edu	37	7	6464452	6464452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	6464452	6464452	C	T	SNP	DAGLB	ENST00000454738	human	ensembl	74_37	-1	known	missense	c.512	p.R171H	0.719	NULL	NULL	-	no_errors	DAGLB	HGNC	ENSG00000164535				117	0	0	36	26	41.9355
WBSCR17	0	genome.wustl.edu	37	7	70800582	70800582	+	Silent	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	70800582	70800582	T	G	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	silent	c.285	p.G95	0.999	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				112	1	0.884956	37	22	37.2881
TYW1B	0	genome.wustl.edu	37	7	72267523	72267523	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	72267523	72267523	G	A	SNP	TYW1B	ENST00000438904	human	ensembl	74_37	-1	known	silent	c.738	p.F246	0.650	NULL	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1B	HGNC	ENSG00000254184				127	0	0	72	4	5.26316
HIP1	0	genome.wustl.edu	37	7	75183785	75183785	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	75183785	75183785	G	A	SNP	HIP1	ENST00000336926	human	ensembl	74_37	-1	known	silent	c.2004	p.I668	0.149	NULL	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1	HGNC	ENSG00000127946				106	0	0	40	7	14.8936
GLCCI1	0	genome.wustl.edu	37	7	8043675	8043675	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	8043675	8043675	G	T	SNP	GLCCI1	ENST00000223145	human	ensembl	74_37	+1	known	missense	c.595	p.D199Y	1.000	NULL	NULL	-	no_errors	GLCCI1	HGNC	ENSG00000106415				137	0	0	56	30	34.8837
GTPBP10	0	genome.wustl.edu	37	7	89984426	89984426	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	89984426	89984426	A	T	SNP	GTPBP10	ENST00000222511	human	ensembl	74_37	+1	known	missense	c.346	p.I116F	0.621	pfam_GTP1_OBG_dom,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA	pfam_GTP_binding_domain,pfam_GTP1_OBG_dom,pfam_Fe2_transport_prot_B_N,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain	-	no_errors	GTPBP10	HGNC	ENSG00000105793				136	0	0	73	31	29.8077
MTERF	0	genome.wustl.edu	37	7	91503062	91503062	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	91503062	91503062	G	T	SNP	MTERF	ENST00000351870	human	ensembl	74_37	-1	known	missense	c.1046	p.P349H	1.000	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERF	HGNC	ENSG00000127989				97	0	0	58	19	24.6753
BAIAP2L1	0	genome.wustl.edu	37	7	97946561	97946561	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	97946561	97946561	G	A	SNP	BAIAP2L1	ENST00000005260	human	ensembl	74_37	-1	known	silent	c.456	p.N152	0.993	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L1	HGNC	ENSG00000006453				323	0	0	99	41	29.2857
VPS13B	0	genome.wustl.edu	37	8	100287380	100287380	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	100287380	100287380	A	G	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.2722	p.K908E	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				138	1	0.719424	97	25	20.4918
RNF19A	0	genome.wustl.edu	37	8	101271170	101271170	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	101271170	101271170	G	T	SNP	RNF19A	ENST00000341084	human	ensembl	74_37	-1	known	missense	c.2131	p.P711T	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677				227	0	0	172	48	21.8182
DCAF13	0	genome.wustl.edu	37	8	104432506	104432506	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	104432506	104432506	G	T	SNP	DCAF13	ENST00000297579	human	ensembl	74_37	+1	known	missense	c.541	p.D181Y	1.000	superfamily_WD40_repeat_dom	pfam_Sof1,pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				76	0	0	64	14	17.9487
RIMS2	0	genome.wustl.edu	37	8	105105702	105105702	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	105105702	105105702	C	T	SNP	RIMS2	ENST00000436393	human	ensembl	74_37	+1	novel	nonsense	c.2725	p.R909*	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	RIMS2	HGNC	ENSG00000176406				222	0	0	116	33	22.1477
LRP12	0	genome.wustl.edu	37	8	105509814	105509814	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	105509814	105509814	C	A	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	missense	c.909	p.E303D	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				92	0	0	80	21	20.7921
SLC35G5	0	genome.wustl.edu	37	8	11188791	11188791	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	11188791	11188791	G	A	SNP	SLC35G5	ENST00000382435	human	ensembl	74_37	+1	known	missense	c.176	p.R59H	0.999	pfam_DMT	pfam_DMT	-	no_errors	SLC35G5	HGNC	ENSG00000177710				231	1	0.431034	76	23	23.2323
FAM167A	0	genome.wustl.edu	37	8	11282136	11282136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	11282136	11282136	G	A	SNP	FAM167A	ENST00000284486	human	ensembl	74_37	-1	known	missense	c.391	p.R131W	1.000	pfam_FAM167	pfam_FAM167	-	no_errors	FAM167A	HGNC	ENSG00000154319				54	0	0	12	6	33.3333
SLC30A8	0	genome.wustl.edu	37	8	118170071	118170071	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	118170071	118170071	C	T	SNP	SLC30A8	ENST00000456015	human	ensembl	74_37	+1	known	missense	c.560	p.A187V	0.946	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A8	HGNC	ENSG00000164756				147	1	0.675676	87	21	19.4444
MED30	0	genome.wustl.edu	37	8	118540959	118540959	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	118540959	118540959	C	T	SNP	MED30	ENST00000297347	human	ensembl	74_37	+1	known	missense	c.247	p.R83C	1.000	pfam_Mediator_Med30_met	pfam_Mediator_Med30_met	-	no_errors	MED30	HGNC	ENSG00000164758				185	0	0	115	34	22.8188
ENSG00000245330	0	genome.wustl.edu	37	8	120886318	120886318	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	120886318	120886318	C	T	SNP	ENSG00000245330	ENST00000500705	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KB-1471A8.1	Clone_based_vega_gene	ENSG00000245330				18	0	0	24	7	22.5806
MTBP	0	genome.wustl.edu	37	8	121463538	121463538	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	121463538	121463538	G	A	SNP	MTBP	ENST00000305949	human	ensembl	74_37	+1	known	missense	c.401	p.S134N	1.000	NULL	NULL	-	no_errors	MTBP	HGNC	ENSG00000172167				73	0	0	46	20	30.303
ATAD2	0	genome.wustl.edu	37	8	124361578	124361578	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	124361578	124361578	G	A	SNP	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	nonsense	c.1753	p.R585*	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				164	0	0	115	31	21.2329
RNF139	0	genome.wustl.edu	37	8	125499067	125499067	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	125499067	125499067	C	T	SNP	RNF139	ENST00000303545	human	ensembl	74_37	+1	known	silent	c.1177	p.L393	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF139	HGNC	ENSG00000170881				490	0	0	337	101	23.0594
ZNF572	0	genome.wustl.edu	37	8	125989004	125989004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	125989004	125989004	G	A	SNP	ZNF572	ENST00000319286	human	ensembl	74_37	+1	known	missense	c.494	p.C165Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938				167	0	0	77	33	30
DLC1	0	genome.wustl.edu	37	8	12956978	12956978	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	12956978	12956978	G	A	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	silent	c.2868	p.N956	0.196	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				122	0	0	42	16	27.5862
ADCY8	0	genome.wustl.edu	37	8	131848643	131848643	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	131848643	131848643	C	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.2555	p.R852L	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				110	0	0	68	9	11.6883
DENND3	0	genome.wustl.edu	37	8	142186754	142186754	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	142186754	142186754	C	T	SNP	DENND3	ENST00000262585	human	ensembl	74_37	+1	known	missense	c.2360	p.A787V	0.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339				155	0	0	72	5	6.49351
CYP11B2	0	genome.wustl.edu	37	8	143995763	143995763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	143995763	143995763	C	T	SNP	CYP11B2	ENST00000323110	human	ensembl	74_37	-1	known	missense	c.871	p.A291T	0.998	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142				69	0	0	27	7	20.5882
LY6E	0	genome.wustl.edu	37	8	144103156	144103156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	144103156	144103156	G	A	SNP	LY6E	ENST00000292494	human	ensembl	74_37	+1	known	missense	c.346	p.A116T	0.005	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LY6E	HGNC	ENSG00000160932				225	0	0	75	17	18.4783
C8orf31	0	genome.wustl.edu	37	8	144126111	144126111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	144126111	144126111	G	A	SNP	C8orf31	ENST00000395172	human	ensembl	74_37	+1	known	missense	c.232	p.A78T	0.000	NULL	NULL	-	no_errors	C8orf31	HGNC	ENSG00000177335				129	0	0	30	17	36.1702
NRBP2	0	genome.wustl.edu	37	8	144919465	144919465	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	144919465	144919465	C	T	SNP	NRBP2	ENST00000327830	human	ensembl	74_37	-1	known	silent	c.354	p.S118	0.313	NULL	superfamily_Kinase-like_dom	-	no_errors	NRBP2	HGNC	ENSG00000185189				55	0	0	17	9	34.6154
PLEC	0	genome.wustl.edu	37	8	144993912	144993912	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	144993912	144993912	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.10488	p.G3496	0.996	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				116	0	0	41	19	31.6667
PLEC	0	genome.wustl.edu	37	8	144996889	144996889	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	144996889	144996889	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.7619	p.A2540V	1.000	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				47	0	0	27	10	27.027
PLEC	0	genome.wustl.edu	37	8	145002109	145002109	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	145002109	145002109	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.3723	p.V1241	0.995	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				41	0	0	7	4	36.3636
SPATC1	0	genome.wustl.edu	37	8	145094927	145094927	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	145094927	145094927	C	T	SNP	SPATC1	ENST00000377470	human	ensembl	74_37	+1	known	missense	c.329	p.P110L	0.000	NULL	NULL	-	no_errors	SPATC1	HGNC	ENSG00000186583				155	0	0	40	10	20
OPLAH	0	genome.wustl.edu	37	8	145113410	145113410	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	145113410	145113410	C	A	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	missense	c.772	p.G258C	1.000	pfam_Hydantoinase_A	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				87	0	0	17	4	19.0476
OPLAH	0	genome.wustl.edu	37	8	145113453	145113453	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	145113453	145113453	G	A	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	silent	c.729	p.P243	0.513	pfam_Hydantoinase_A	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				110	0	0	33	6	15.3846
VPS28	0	genome.wustl.edu	37	8	145649444	145649444	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	145649444	145649444	G	A	SNP	VPS28	ENST00000377348	human	ensembl	74_37	-1	known	silent	c.528	p.G176	0.960	pfam_VPS28,pirsf_VPS28	pfam_VPS28,pirsf_VPS28	-	no_errors	VPS28	HGNC	ENSG00000160948				234	0	0	73	24	24.7423
CYHR1	0	genome.wustl.edu	37	8	145689777	145689777	+	Silent	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	145689777	145689777	G	C	SNP	CYHR1	ENST00000306145	human	ensembl	74_37	-1	known	silent	c.312	p.G104	0.858	NULL	NULL	-	no_errors	CYHR1	HGNC	ENSG00000187954				276	1	0.361011	87	23	20.9091
LRRC24	0	genome.wustl.edu	37	8	145747941	145747941	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	145747941	145747941	G	A	SNP	LRRC24	ENST00000529415	human	ensembl	74_37	-1	known	missense	c.1460	p.A487V	0.000	NULL	pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC24	HGNC	ENSG00000254402				12	0	0	6	3	33.3333
CLN8	0	genome.wustl.edu	37	8	1728804	1728804	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	1728804	1728804	G	A	SNP	CLN8	ENST00000519254	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	CLN8	HGNC	ENSG00000182372				46	0	0	18	6	25
ADRA1A	0	genome.wustl.edu	37	8	26627887	26627887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	26627887	26627887	C	T	SNP	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	missense	c.1180	p.V394I	1.000	prints_ADRA1A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907				240	0	0	85	39	31.4516
HMBOX1	0	genome.wustl.edu	37	8	28827712	28827712	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	28827712	28827712	A	G	SNP	HMBOX1	ENST00000444075	human	ensembl	74_37	+1	known	missense	c.176	p.D59G	1.000	pfam_HNF-1_N	pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HMBOX1	HGNC	ENSG00000147421				107	0	0	58	29	33.3333
CSMD1	0	genome.wustl.edu	37	8	3611465	3611465	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	3611465	3611465	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	silent	c.918	p.N306	0.644	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				71	0	0	22	12	35.2941
ERLIN2	0	genome.wustl.edu	37	8	37607921	37607921	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	37607921	37607921	A	G	SNP	ERLIN2	ENST00000276461	human	ensembl	74_37	+1	known	missense	c.566	p.E189G	1.000	pfam_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN2	HGNC	ENSG00000147475				95	0	0	32	4	11.1111
ADAM32	0	genome.wustl.edu	37	8	39022629	39022629	+	Silent	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	39022629	39022629	T	C	SNP	ADAM32	ENST00000379907	human	ensembl	74_37	+1	known	silent	c.747	p.G249	0.999	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM32	HGNC	ENSG00000197140				106	0	0	58	16	21.6216
ANK1	0	genome.wustl.edu	37	8	41530179	41530179	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	41530179	41530179	C	A	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.4789	p.G1597C	0.996	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				301	0	0	70	32	31.3725
DKK4	0	genome.wustl.edu	37	8	42231818	42231818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	42231818	42231818	G	A	SNP	DKK4	ENST00000220812	human	ensembl	74_37	-1	known	missense	c.475	p.R159C	1.000	pfam_Prokineticin_domain	pfam_Dickkopf_N,pfam_Prokineticin_domain	-	no_errors	DKK4	HGNC	ENSG00000104371				183	0	0	55	37	40.2174
SPIDR	0	genome.wustl.edu	37	8	48353071	48353071	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	48353071	48353071	G	A	SNP	SPIDR	ENST00000297423	human	ensembl	74_37	+1	known	missense	c.1064	p.R355H	0.000	NULL	NULL	-	no_errors	SPIDR	HGNC	ENSG00000164808				98	0	0	41	8	16.3265
PXDNL	0	genome.wustl.edu	37	8	52258393	52258393	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	52258393	52258393	C	G	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.4016	p.R1339T	0.384	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				49	0	0	35	9	20.4545
TERF1	0	genome.wustl.edu	37	8	73942591	73942591	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	73942591	73942591	C	T	SNP	TERF1	ENST00000276603	human	ensembl	74_37	+1	known	missense	c.908	p.A303V	0.018	pirsf_Telomere_repeat-bd-1/2	pfam_Telomere_rpt-bd_fac_dimer_dom,pfam_SANT/Myb,superfamily_Telomere_rpt-bd_fac_dimer_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	-	no_errors	TERF1	HGNC	ENSG00000147601				28	0	0	23	8	25.8065
FAM86B3P	0	genome.wustl.edu	37	8	8098874	8098874	+	RNA	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	8098874	8098874	A	G	SNP	FAM86B3P	ENST00000310542	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	FAM86B3P	HGNC	ENSG00000173295				70	0	0	27	5	15.625
ZBTB10	0	genome.wustl.edu	37	8	81399898	81399898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	81399898	81399898	G	A	SNP	ZBTB10	ENST00000430430	human	ensembl	74_37	+1	known	missense	c.853	p.V285M	0.976	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB10	HGNC	ENSG00000205189				70	0	0	30	11	26.8293
MFHAS1	0	genome.wustl.edu	37	8	8749608	8749608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	8749608	8749608	G	A	SNP	MFHAS1	ENST00000276282	human	ensembl	74_37	-1	known	missense	c.961	p.L321F	0.996	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	MFHAS1	HGNC	ENSG00000147324				116	0	0	35	10	22.2222
RUNX1T1	0	genome.wustl.edu	37	8	93074929	93074929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	93074929	93074929	C	T	SNP	RUNX1T1	ENST00000517493	human	ensembl	74_37	-1	known	missense	c.97	p.A33T	1.000	NULL	NULL	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				47	0	0	34	11	24.4444
GDF6	0	genome.wustl.edu	37	8	97156923	97156923	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	97156923	97156923	G	A	SNP	GDF6	ENST00000287020	human	ensembl	74_37	-1	known	silent	c.1236	p.P412	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466				58	0	0	24	7	22.5806
MATN2	0	genome.wustl.edu	37	8	98943442	98943442	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	98943442	98943442	T	G	SNP	MATN2	ENST00000254898	human	ensembl	74_37	+1	known	missense	c.404	p.M135R	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561				63	0	0	19	12	38.7097
TRIM14	0	genome.wustl.edu	37	9	100857274	100857274	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	100857274	100857274	A	G	SNP	TRIM14	ENST00000341469	human	ensembl	74_37	-1	known	missense	c.575	p.M192T	0.994	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM14	HGNC	ENSG00000106785				161	0	0	58	18	23.6842
COL15A1	0	genome.wustl.edu	37	9	101829281	101829281	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	101829281	101829281	C	A	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	missense	c.3769	p.H1257N	0.995	pfam_Collagenase_NC10/endostatin,superfamily_C-type_lectin_fold	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				180	0	0	69	20	22.4719
TEX10	0	genome.wustl.edu	37	9	103090122	103090122	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	103090122	103090122	C	T	SNP	TEX10	ENST00000374902	human	ensembl	74_37	-1	known	missense	c.1748	p.R583Q	1.000	NULL	pfam_IPI1/TEX10,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891				119	0	0	62	9	12.6761
GRIN3A	0	genome.wustl.edu	37	9	104335629	104335629	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	104335629	104335629	G	A	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.3175	p.R1059W	0.930	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				149	0	0	102	25	19.685
GRIN3A	0	genome.wustl.edu	37	9	104499831	104499831	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	104499831	104499831	T	C	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.431	p.Y144C	1.000	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				92	0	0	44	7	13.7255
OR13C5	0	genome.wustl.edu	37	9	107360934	107360934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	107360934	107360934	G	A	SNP	OR13C5	ENST00000374779	human	ensembl	74_37	-1	known	missense	c.761	p.T254I	0.210	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800				124	0	0	90	19	17.4312
ZNF462	0	genome.wustl.edu	37	9	109689449	109689449	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	109689449	109689449	G	T	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.3256	p.G1086C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				93	0	0	88	22	20
SVEP1	0	genome.wustl.edu	37	9	113242031	113242031	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	113242031	113242031	G	T	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.2371	p.R791S	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				298	0	0	224	37	14.1762
SLC46A2	0	genome.wustl.edu	37	9	115642093	115642093	+	Silent	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	115642093	115642093	C	A	SNP	SLC46A2	ENST00000374228	human	ensembl	74_37	-1	known	silent	c.1377	p.V459	1.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	SLC46A2	HGNC	ENSG00000119457				194	0	0	108	24	18.1818
TNC	0	genome.wustl.edu	37	9	117849317	117849317	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	117849317	117849317	G	A	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	silent	c.693	p.C231	0.908	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				141	0	0	74	24	24.4898
BRINP1	0	genome.wustl.edu	37	9	121971175	121971175	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	121971175	121971175	G	T	SNP	BRINP1	ENST00000265922	human	ensembl	74_37	-1	known	missense	c.967	p.L323M	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP1	HGNC	ENSG00000078725				110	0	0	57	18	24
CNTRL	0	genome.wustl.edu	37	9	123860802	123860802	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	123860802	123860802	C	T	SNP	CNTRL	ENST00000238341	human	ensembl	74_37	+1	known	missense	c.760	p.P254S	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNTRL	HGNC	ENSG00000119397				97	0	0	67	20	22.9885
GSN	0	genome.wustl.edu	37	9	124089067	124089067	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	124089067	124089067	C	T	SNP	GSN	ENST00000373806	human	ensembl	74_37	+1	putative	silent	c.12	p.D4	0.000	smart_Villin/Gelsolin,prints_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	GSN	HGNC	ENSG00000148180				46	0	0	22	7	24.1379
RABGAP1	0	genome.wustl.edu	37	9	125836582	125836582	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	125836582	125836582	T	C	SNP	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	missense	c.2128	p.Y710H	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				88	0	0	90	18	16.6667
DENND1A	0	genome.wustl.edu	37	9	126202750	126202750	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	126202750	126202750	G	A	SNP	DENND1A	ENST00000394219	human	ensembl	74_37	-1	known	silent	c.1281	p.C427	0.065	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522				122	0	0	53	9	14.5161
TYRP1	0	genome.wustl.edu	37	9	12695537	12695537	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	12695537	12695537	A	G	SNP	TYRP1	ENST00000388918	human	ensembl	74_37	+1	known	silent	c.408	p.L136	0.979	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165				140	0	0	61	31	33.6957
NEK6	0	genome.wustl.edu	37	9	127101923	127101923	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	127101923	127101923	C	T	SNP	NEK6	ENST00000373600	human	ensembl	74_37	+1	known	silent	c.798	p.S266	0.993	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK6	HGNC	ENSG00000119408				274	0	0	137	37	21.2644
RABEPK	0	genome.wustl.edu	37	9	127982924	127982924	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	127982924	127982924	C	T	SNP	RABEPK	ENST00000373538	human	ensembl	74_37	+1	known	silent	c.471	p.G157	0.008	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	RABEPK	HGNC	ENSG00000136933				135	0	0	44	22	33.3333
MVB12B	0	genome.wustl.edu	37	9	129243476	129243476	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	129243476	129243476	C	T	SNP	MVB12B	ENST00000485886	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MVB12B	HGNC	ENSG00000196814				17	0	0	21	6	22.2222
GOLGA2	0	genome.wustl.edu	37	9	131028142	131028142	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	131028142	131028142	C	A	SNP	GOLGA2	ENST00000421699	human	ensembl	74_37	-1	known	missense	c.670	p.G224W	0.994	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110				150	0	0	80	28	25.9259
SPTAN1	0	genome.wustl.edu	37	9	131395598	131395598	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	131395598	131395598	G	A	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	silent	c.7419	p.S2473	0.940	pfam_EF-hand_Ca_insen	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				189	0	0	65	24	26.9663
PKN3	0	genome.wustl.edu	37	9	131476529	131476529	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	131476529	131476529	C	T	SNP	PKN3	ENST00000291906	human	ensembl	74_37	+1	known	missense	c.1366	p.R456C	1.000	NULL	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN3	HGNC	ENSG00000160447				332	0	0	157	38	19.4872
FAM73B	0	genome.wustl.edu	37	9	131825895	131825895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	131825895	131825895	G	A	SNP	FAM73B	ENST00000358369	human	ensembl	74_37	+1	known	missense	c.1155	p.M385I	1.000	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73B	HGNC	ENSG00000148343				173	0	0	59	21	26.25
RAPGEF1	0	genome.wustl.edu	37	9	134501510	134501510	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	134501510	134501510	G	A	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	nonsense	c.1504	p.Q502*	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263				61	0	0	30	5	14.2857
TTF1	0	genome.wustl.edu	37	9	135277575	135277575	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	135277575	135277575	C	T	SNP	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	missense	c.634	p.A212T	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				119	0	0	53	16	23.1884
SLC2A6	0	genome.wustl.edu	37	9	136340541	136340541	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	136340541	136340541	T	G	SNP	SLC2A6	ENST00000371899	human	ensembl	74_37	-1	known	missense	c.755	p.Q252P	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A6	HGNC	ENSG00000160326				76	0	0	25	8	24.2424
FCN2	0	genome.wustl.edu	37	9	137778363	137778363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	137778363	137778363	C	T	SNP	FCN2	ENST00000291744	human	ensembl	74_37	+1	known	missense	c.647	p.A216V	0.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FCN2	HGNC	ENSG00000160339				341	0	0	105	25	19.2308
SNAPC4	0	genome.wustl.edu	37	9	139272627	139272627	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	139272627	139272627	G	C	SNP	SNAPC4	ENST00000298532	human	ensembl	74_37	-1	known	missense	c.3652	p.P1218A	0.002	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684				48	0	0	16	5	23.8095
SNAPC4	0	genome.wustl.edu	37	9	139272628	139272628	+	Silent	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	139272628	139272628	C	T	SNP	SNAPC4	ENST00000298532	human	ensembl	74_37	-1	known	silent	c.3651	p.E1217	0.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684				49	0	0	16	5	23.8095
FAM69B	0	genome.wustl.edu	37	9	139617657	139617657	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	139617657	139617657	G	A	SNP	FAM69B	ENST00000371692	human	ensembl	74_37	+1	known	missense	c.727	p.A243T	0.002	pfam_FAM69_kinase_dom	pfam_FAM69_kinase_dom	-	no_errors	FAM69B	HGNC	ENSG00000165716				232	0	0	68	11	13.9241
SNHG7	0	genome.wustl.edu	37	9	139621117	139621117	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	139621117	139621117	G	A	SNP	SNHG7	ENST00000447221	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG7	HGNC	ENSG00000233016				44	0	0	8	5	38.4615
CBWD1	0	genome.wustl.edu	37	9	163985	163985	+	Silent	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	163985	163985	A	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	silent	c.483	p.Y161	0.999	pfam_CobW/HypB/UreG_dom,superfamily_P-loop_NTPase	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD1	HGNC	ENSG00000172785				361	3	0.824176	245	40	14.0351
BNC2	0	genome.wustl.edu	37	9	16435703	16435703	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	16435703	16435703	G	T	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.2489	p.P830Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				101	0	0	53	11	17.1875
ENSG00000231909	0	genome.wustl.edu	37	9	19461326	19461326	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	19461326	19461326	G	A	SNP	ENSG00000231909	ENST00000438342	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-363E7.3	Clone_based_vega_gene	ENSG00000231909				32	0	0	7	10	58.8235
ZBTB5	0	genome.wustl.edu	37	9	37441517	37441517	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	37441517	37441517	G	A	SNP	ZBTB5	ENST00000307750	human	ensembl	74_37	-1	known	silent	c.1032	p.S344	0.950	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795				150	0	0	64	30	31.9149
CD274	0	genome.wustl.edu	37	9	5457282	5457282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	5457282	5457282	C	T	SNP	CD274	ENST00000381577	human	ensembl	74_37	+1	known	missense	c.256	p.R86W	0.019	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD274	HGNC	ENSG00000120217				67	0	0	36	18	33.3333
APBA1	0	genome.wustl.edu	37	9	72082835	72082835	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	72082835	72082835	G	A	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	silent	c.1386	p.A462	0.447	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				482	0	0	200	43	17.6955
TRPM3	0	genome.wustl.edu	37	9	73152148	73152148	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	73152148	73152148	C	T	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.3926	p.R1309H	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				136	0	0	87	23	20.9091
C9orf85	0	genome.wustl.edu	37	9	74526748	74526748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	74526748	74526748	C	T	SNP	C9orf85	ENST00000377031	human	ensembl	74_37	+1	known	missense	c.98	p.T33I	1.000	pfam_DUF2039	pfam_DUF2039	-	no_errors	C9orf85	HGNC	ENSG00000155621				219	0	0	105	22	17.3228
PRUNE2	0	genome.wustl.edu	37	9	79324975	79324975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	79324975	79324975	G	A	SNP	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	missense	c.1138	p.P380S	0.001	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				57	0	0	38	8	17.3913
PRUNE2	0	genome.wustl.edu	37	9	79469039	79469039	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	79469039	79469039	T	C	SNP	PRUNE2	ENST00000376718	human	ensembl	74_37	-1	novel	missense	c.122	p.Y41C	1.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,pfam_DHHA2,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				76	0	0	40	15	27.2727
DMRT1	0	genome.wustl.edu	37	9	841907	841907	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	841907	841907	G	A	SNP	DMRT1	ENST00000382276	human	ensembl	74_37	+1	known	silent	c.69	p.P23	0.951	NULL	pfam_DM_DNA-bd,pfam_DMRT1-like,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT1	HGNC	ENSG00000137090				44	0	0	21	6	22.2222
SHC3	0	genome.wustl.edu	37	9	91656996	91656996	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	91656996	91656996	C	A	SNP	SHC3	ENST00000375835	human	ensembl	74_37	-1	known	missense	c.1305	p.W435C	0.000	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC3	HGNC	ENSG00000148082				125	0	0	79	22	21.7822
SECISBP2	0	genome.wustl.edu	37	9	91964783	91964783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	91964783	91964783	G	A	SNP	SECISBP2	ENST00000375807	human	ensembl	74_37	+1	known	missense	c.1831	p.A611T	0.012	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2	HGNC	ENSG00000187742				169	0	0	76	20	20.8333
ANKRD19P	0	genome.wustl.edu	37	9	95599082	95599082	+	RNA	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	95599082	95599082	C	T	SNP	ANKRD19P	ENST00000464387	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	ANKRD19P	HGNC	ENSG00000187984				106	0	0	41	3	6.81818
FGD3	0	genome.wustl.edu	37	9	95738953	95738953	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	95738953	95738953	A	G	SNP	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	missense	c.415	p.T139A	0.000	superfamily_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				64	0	0	24	5	17.2414
ZNF169	0	genome.wustl.edu	37	9	97063569	97063569	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	97063569	97063569	C	T	SNP	ZNF169	ENST00000395395	human	ensembl	74_37	+1	known	missense	c.1729	p.R577C	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787				110	0	0	43	17	28.3333
PTCH1	0	genome.wustl.edu	37	9	98209385	98209385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	98209385	98209385	G	A	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.4153	p.P1385S	0.882	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				125	0	0	72	14	16.2791
NXF2B	0	genome.wustl.edu	37	X	101623733	101623733	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	101623733	101623733	T	G	SNP	NXF2B	ENST00000372749	human	ensembl	74_37	-1	known	missense	c.629	p.K210T	0.001	NULL	pfam_Tap_RNA-bd,pfam_TAP_C_dom,pfam_NTF2,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF2B	HGNC	ENSG00000185945				107	0	0	50	7	12.2807
GPRASP1	0	genome.wustl.edu	37	X	101909850	101909850	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	101909850	101909850	C	T	SNP	GPRASP1	ENST00000361600	human	ensembl	74_37	+1	known	nonsense	c.1009	p.R337*	0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932				149	0	0	48	16	25
RGAG1	0	genome.wustl.edu	37	X	109695155	109695155	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	109695155	109695155	T	C	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	missense	c.1310	p.M437T	0.003	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978				224	0	0	39	70	64.2202
ENSG00000230159	0	genome.wustl.edu	37	X	115826963	115826963	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	115826963	115826963	G	A	SNP	ENSG00000230159	ENST00000446495	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-232D9.3	Clone_based_vega_gene	ENSG00000230159				41	0	0	9	12	57.1429
UPF3B	0	genome.wustl.edu	37	X	118971950	118971950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	118971950	118971950	G	A	SNP	UPF3B	ENST00000276201	human	ensembl	74_37	-1	known	missense	c.1072	p.R358C	0.969	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351				198	1	0.502513	31	48	60.7595
STAG2	0	genome.wustl.edu	37	X	123196991	123196991	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	123196991	123196991	C	G	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	missense	c.1757	p.T586S	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				29	0	0	12	10	45.4545
TENM1	0	genome.wustl.edu	37	X	123680890	123680890	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	123680890	123680890	A	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.2485	p.Y829N	0.975	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				82	0	0	35	8	18.6047
ELF4	0	genome.wustl.edu	37	X	129201300	129201300	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	129201300	129201300	A	G	SNP	ELF4	ENST00000308167	human	ensembl	74_37	-1	known	missense	c.1388	p.F463S	0.999	NULL	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF4	HGNC	ENSG00000102034				105	0	0	15	18	54.5455
ASMTL	0	genome.wustl.edu	37	X	1536899	1536899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	1536899	1536899	C	T	SNP	ASMTL	ENST00000381317	human	ensembl	74_37	-1	known	missense	c.1489	p.G497R	0.038	pfam_O_MeTrfase_2	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093				119	0	0	30	8	21.0526
G6PD	0	genome.wustl.edu	37	X	153762671	153762671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	153762671	153762671	C	T	SNP	G6PD	ENST00000369620	human	ensembl	74_37	-1	known	missense	c.526	p.D176N	0.999	pfam_G6P_DH_NAD-bd,pirsf_G6P_DH,prints_G6P_DH	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,pirsf_G6P_DH,prints_G6P_DH	-	no_errors	G6PD	HGNC	ENSG00000160211				86	0	0	15	14	48.2759
IKBKG	0	genome.wustl.edu	37	X	153770626	153770626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	153770626	153770626	C	T	SNP	IKBKG	ENST00000369609	human	ensembl	74_37	+1	putative	missense	c.148	p.R50C	0.000	NULL	pfam_NEMO_N	-	no_errors	IKBKG	HGNC	ENSG00000073009				56	0	0	5	3	37.5
MPP1	0	genome.wustl.edu	37	X	154020565	154020565	+	RNA	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	154020565	154020565	C	A	SNP	MPP1	ENST00000488694	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MPP1	HGNC	ENSG00000130830				61	0	0	22	14	38.8889
KLHL34	0	genome.wustl.edu	37	X	21675778	21675778	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	21675778	21675778	G	T	SNP	KLHL34	ENST00000379499	human	ensembl	74_37	-1	known	missense	c.129	p.H43Q	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915				25	0	0	3	6	66.6667
ACOT9	0	genome.wustl.edu	37	X	23740851	23740851	+	Silent	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	23740851	23740851	G	A	SNP	ACOT9	ENST00000379303	human	ensembl	74_37	-1	known	silent	c.420	p.H140	1.000	NULL	pfam_Thioestr_supf	-	no_errors	ACOT9	HGNC	ENSG00000123130				168	0	0	26	35	57.377
GK-AS1	0	genome.wustl.edu	37	X	30742187	30742187	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	30742187	30742187	G	A	SNP	GK-AS1	ENST00000464659	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GK-AS1	HGNC	ENSG00000243055				15	0	0	3	4	57.1429
NDUFB11	0	genome.wustl.edu	37	X	47001792	47001792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	47001792	47001792	C	T	SNP	NDUFB11	ENST00000276062	human	ensembl	74_37	-1	known	missense	c.416	p.R139Q	1.000	pfam_NADH_UbQ_OxRdtase_ESSS_su	pfam_NADH_UbQ_OxRdtase_ESSS_su	-	no_errors	NDUFB11	HGNC	ENSG00000147123				56	0	0	8	11	57.8947
WAS	0	genome.wustl.edu	37	X	48544502	48544502	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	48544502	48544502	C	T	SNP	WAS	ENST00000376701	human	ensembl	74_37	+1	known	missense	c.538	p.H180Y	0.585	NULL	pfam_WH1/EVH1,pfam_CRIB_dom,pfam_WH2_dom,superfamily_WASP_C,smart_WH1/EVH1,smart_CRIB_dom,smart_WH2_dom,pfscan_CRIB_dom,pfscan_WH1/EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285				56	0	0	10	15	60
HSD17B10	0	genome.wustl.edu	37	X	53458328	53458328	+	RNA	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	53458328	53458328	G	A	SNP	HSD17B10	ENST00000477706	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSD17B10	HGNC	ENSG00000072506				18	0	0	12	7	36.8421
ALAS2	0	genome.wustl.edu	37	X	55040074	55040074	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	55040074	55040074	T	G	SNP	ALAS2	ENST00000330807	human	ensembl	74_37	-1	known	missense	c.1445	p.N482T	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578				36	0	0	21	3	12.5
SHOX	0	genome.wustl.edu	37	X	595436	595436	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	595436	595436	C	A	SNP	SHOX	ENST00000381578	human	ensembl	74_37	+1	known	missense	c.361	p.R121S	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	SHOX	HGNC	ENSG00000185960				89	0	0	16	5	23.8095
VSIG4	0	genome.wustl.edu	37	X	65259784	65259784	+	Splice_Site	SNP	A	A	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	65259784	65259784	A	G	SNP	VSIG4	ENST00000374737	human	ensembl	74_37	-1	known	splice_site	c.55+2	e1+2	1.000	-	-	-	no_errors	VSIG4	HGNC	ENSG00000155659				37	0	0	7	10	58.8235
OPHN1	0	genome.wustl.edu	37	X	67273626	67273626	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	67273626	67273626	G	A	SNP	OPHN1	ENST00000355520	human	ensembl	74_37	-1	known	missense	c.2185	p.R729W	0.997	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482				34	0	0	9	6	40
SLC7A3	0	genome.wustl.edu	37	X	70147375	70147375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	70147375	70147375	C	T	SNP	SLC7A3	ENST00000298085	human	ensembl	74_37	-1	known	missense	c.1142	p.R381H	0.928	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349				32	0	0	6	10	62.5
PHKA1	0	genome.wustl.edu	37	X	71801013	71801013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	71801013	71801013	C	T	SNP	PHKA1	ENST00000373539	human	ensembl	74_37	-1	known	missense	c.3562	p.A1188T	1.000	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177				51	0	0	20	5	20
UTY	0	genome.wustl.edu	37	Y	15522892	15522892	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	Y	15522892	15522892	T	C	SNP	UTY	ENST00000382896	human	ensembl	74_37	-1	known	missense	c.536	p.D179G	1.000	pfscan_TPR-contain_dom	pfam_JmjC_dom,pfam_TPR_1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UTY	HGNC	ENSG00000183878				67	0	0	10	15	60
PRAMEF14	0	genome.wustl.edu	37	1	13668962	13668962	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	13668962	13668962	G	-	DEL	PRAMEF14	ENST00000344998	human	ensembl	74_37	-1	known	frame_shift_del	c.1224	p.C409fs	0.050	NULL	NULL	-	no_errors	PRAMEF14	HGNC	ENSG00000204481				202	0	0	85	5	5.55556
VPS45	0	genome.wustl.edu	37	1	150082564	150082565	+	RNA	DEL	TT	TT	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	150082564	150082565	TT	-	DEL	VPS45	ENST00000484306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631				24	0	0	9	4	30.7692
GON4L	0	genome.wustl.edu	37	1	155785777	155785777	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	155785777	155785777	A	-	DEL	GON4L	ENST00000471341	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580				11	0	0	8	5	38.4615
OR10Z1	0	genome.wustl.edu	37	1	158576757	158576757	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	158576757	158576757	T	-	DEL	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	frame_shift_del	c.529	p.C179fs	0.950	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				194	1	0.512821	169	28	14.2132
RPL31P11	0	genome.wustl.edu	37	1	161654572	161654572	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	161654572	161654572	T	-	DEL	RPL31P11	ENST00000426558	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.150	-	-	-	no_errors	RPL31P11	HGNC	ENSG00000213075				13	0	0	8	8	50
KIFAP3	0	genome.wustl.edu	37	1	170024447	170024447	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	170024447	170024447	T	-	DEL	KIFAP3	ENST00000361580	human	ensembl	74_37	-1	known	frame_shift_del	c.163	p.I55fs	1.000	NULL	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	KIFAP3	HGNC	ENSG00000075945				70	0	0	35	42	54.5455
RNASEL	0	genome.wustl.edu	37	1	182545526	182545527	+	Splice_Site	INS	-	-	AA			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	182545526	182545527	-	AA	INS	RNASEL	ENST00000367559	human	ensembl	74_37	-1	known	splice_site_ins	c.1906-3_1906-2	e5-2	0.956:0.341	-	-	-	no_errors	RNASEL	HGNC	ENSG00000135828				14	0	0	16	19	54.2857
IVNS1ABP	0	genome.wustl.edu	37	1	185277956	185277957	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	185277956	185277957	-	T	INS	IVNS1ABP	ENST00000367498	human	ensembl	74_37	-1	known	frame_shift_ins	c.333_332	p.L112fs	1.000:1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679				203	0	0	151	21	12.2093
LEMD1	0	genome.wustl.edu	37	1	205388453	205388453	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	205388453	205388453	T	-	DEL	LEMD1	ENST00000367153	human	ensembl	74_37	-1	known	frame_shift_del	c.110	p.K37fs	0.981	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	-	no_errors	LEMD1	HGNC	ENSG00000186007				265	0	0	98	54	35.5263
CENPF	0	genome.wustl.edu	37	1	214830653	214830653	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	214830653	214830653	A	-	DEL	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	frame_shift_del	c.8863	p.S2957fs	1.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				95	0	0	62	14	18.4211
KCTD3	0	genome.wustl.edu	37	1	215747171	215747171	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	215747171	215747171	T	-	DEL	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	frame_shift_del	c.126	p.S45fs	0.199	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636				164	1	0.606061	170	27	13.7056
USP48	0	genome.wustl.edu	37	1	22033386	22033387	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	22033386	22033387	AA	-	DEL	USP48	ENST00000529637	human	ensembl	74_37	-1	novel	frame_shift_del	c.1975_1974	p.S659fs	0.000:0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				70	0	0	35	24	40.678
MIA3	0	genome.wustl.edu	37	1	222802632	222802633	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	222802632	222802633	-	T	INS	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	frame_shift_ins	c.2070_2071	p.H692fs	0.000:0.000	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305				211	0	0	111	30	21.2766
KIF26B	0	genome.wustl.edu	37	1	245849479	245849479	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	245849479	245849479	C	-	DEL	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	frame_shift_del	c.3194	p.R1067fs	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				87	0	0	46	11	19.2982
OR2W5	0	genome.wustl.edu	37	1	247654684	247654684	+	RNA	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	247654684	247654684	G	-	DEL	OR2W5	ENST00000522351	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664				141	0	0	62	42	40.3846
OR2C3	0	genome.wustl.edu	37	1	247695356	247695356	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	247695356	247695356	C	-	DEL	OR2C3	ENST00000366487	human	ensembl	74_37	-1	known	frame_shift_del	c.458	p.G153fs	0.532	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2C3	HGNC	ENSG00000196242				57	0	0	23	6	20.6897
PHACTR4	0	genome.wustl.edu	37	1	28800273	28800273	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	28800273	28800273	C	-	DEL	PHACTR4	ENST00000373836	human	ensembl	74_37	+1	known	frame_shift_del	c.1061	p.P356fs	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR4	HGNC	ENSG00000204138				525	0	0	167	65	28.0172
ZBTB8OS	0	genome.wustl.edu	37	1	33087368	33087368	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	33087368	33087368	A	-	DEL	ZBTB8OS	ENST00000373506	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	ZBTB8OS	HGNC	ENSG00000176261				14	0	0	13	4	23.5294
AGO1	0	genome.wustl.edu	37	1	36354044	36354045	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	36354044	36354045	-	C	INS	AGO1	ENST00000373204	human	ensembl	74_37	+1	known	frame_shift_ins	c.42_43	p.L16fs	1.000:1.000	NULL	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO1	HGNC	ENSG00000092847				191	0	0	62	20	24.3902
THRAP3	0	genome.wustl.edu	37	1	36762331	36762332	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	36762331	36762332	-	A	INS	THRAP3	ENST00000354618	human	ensembl	74_37	+1	known	frame_shift_ins	c.2263_2264	p.T757fs	1.000:1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118				223	0	0	55	19	25.6757
GRIK3	0	genome.wustl.edu	37	1	37315787	37315787	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	37315787	37315787	A	-	DEL	GRIK3	ENST00000479620	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRIK3	HGNC	ENSG00000163873				11	0	0	5	5	50
FHL3	0	genome.wustl.edu	37	1	38462977	38462977	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	38462977	38462977	T	-	DEL	FHL3	ENST00000475084	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FHL3	HGNC	ENSG00000183386				85	0	0	9	19	67.8571
FHL3	0	genome.wustl.edu	37	1	38465063	38465064	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	38465063	38465064	CA	-	DEL	FHL3	ENST00000373016	human	ensembl	74_37	-1	known	frame_shift_del	c.22_21	p.A8fs	1.000:1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL3	HGNC	ENSG00000183386				103	0	0	34	12	26.087
PPIEL	0	genome.wustl.edu	37	1	40011509	40011509	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	40011509	40011509	T	-	DEL	PPIEL	ENST00000440190	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-69E11.4	Clone_based_vega_gene	ENSG00000182109				49	0	0	15	4	21.0526
ZFP69	0	genome.wustl.edu	37	1	40945114	40945114	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	40945114	40945114	G	-	DEL	ZFP69	ENST00000372705	human	ensembl	74_37	+1	known	frame_shift_del	c.81	p.A29fs	0.667	superfamily_Retrov_capsid_C	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP69	HGNC	ENSG00000187815				93	0	0	33	12	26.6667
DMRTB1	0	genome.wustl.edu	37	1	53930351	53930353	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	53930351	53930353	GCC	-	DEL	DMRTB1	ENST00000371445	human	ensembl	74_37	+1	known	in_frame_del	c.792_794	p.P268in_frame_del	0.001:0.809:0.780	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTB1	HGNC	ENSG00000143006				123	1	0.806452	36	8	18.1818
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				102	0	0	58	14	19.4444
ITGB3BP	0	genome.wustl.edu	37	1	63912547	63912547	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	63912547	63912547	T	-	DEL	ITGB3BP	ENST00000492655	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ITGB3BP	HGNC	ENSG00000142856				91	0	0	32	22	40.7407
EVI5	0	genome.wustl.edu	37	1	93159366	93159366	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	1	93159366	93159366	T	-	DEL	EVI5	ENST00000543509	human	ensembl	74_37	-1	known	frame_shift_del	c.1222	p.M408fs	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208				187	1	0.531915	92	28	23.3333
ITPRIP	0	genome.wustl.edu	37	10	106075480	106075480	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	106075480	106075480	C	-	DEL	ITPRIP	ENST00000278071	human	ensembl	74_37	-1	known	frame_shift_del	c.330	p.S112fs	0.000	NULL	NULL	-	no_errors	ITPRIP	HGNC	ENSG00000148841				311	0	0	78	11	12.3596
SLC18A2	0	genome.wustl.edu	37	10	119014792	119014792	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	119014792	119014792	C	-	DEL	SLC18A2	ENST00000298472	human	ensembl	74_37	+1	known	frame_shift_del	c.705	p.F238fs	0.136	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646				102	0	0	36	14	28
PHYH	0	genome.wustl.edu	37	10	13325835	13325835	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	13325835	13325835	C	-	DEL	PHYH	ENST00000263038	human	ensembl	74_37	-1	known	frame_shift_del	c.683	p.G228fs	0.987	pfam_Phytyl_CoA_dOase	pfam_Phytyl_CoA_dOase	-	no_errors	PHYH	HGNC	ENSG00000107537				798	0	0	265	62	18.9602
TUBGCP2	0	genome.wustl.edu	37	10	135093332	135093332	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	135093332	135093332	G	-	DEL	TUBGCP2	ENST00000543663	human	ensembl	74_37	-1	known	frame_shift_del	c.2731	p.Q911fs	0.463	NULL	pfam_TUBGCP,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640				31	0	0	5	3	37.5
TUBGCP2	0	genome.wustl.edu	37	10	135111566	135111566	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	135111566	135111566	T	-	DEL	TUBGCP2	ENST00000543663	human	ensembl	74_37	-1	known	frame_shift_del	c.506	p.N169fs	0.998	NULL	pfam_TUBGCP,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640				133	1	0.746269	39	16	29.0909
APBB1IP	0	genome.wustl.edu	37	10	26851119	26851120	+	RNA	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	26851119	26851120	-	T	INS	APBB1IP	ENST00000493857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	APBB1IP	HGNC	ENSG00000077420				38	0	0	31	13	29.5455
ZNF248	0	genome.wustl.edu	37	10	38121593	38121593	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	38121593	38121593	A	-	DEL	ZNF248	ENST00000357328	human	ensembl	74_37	-1	known	frame_shift_del	c.690	p.F230fs	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105				94	0	0	62	26	29.5455
DIP2C	0	genome.wustl.edu	37	10	395273	395273	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	395273	395273	G	-	DEL	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	frame_shift_del	c.3107	p.P1036fs	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				80	0	0	42	8	16
DIP2C	0	genome.wustl.edu	37	10	468915	468915	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	468915	468915	G	-	DEL	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	frame_shift_del	c.453	p.T152fs	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				278	0	0	97	30	23.622
MAPK8	0	genome.wustl.edu	37	10	49618297	49618297	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	49618297	49618297	T	-	DEL	MAPK8	ENST00000476134	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAPK8	HGNC	ENSG00000107643				56	0	0	30	17	36.1702
NET1	0	genome.wustl.edu	37	10	5495005	5495005	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	5495005	5495005	T	-	DEL	NET1	ENST00000465087	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NET1	HGNC	ENSG00000173848				21	0	0	13	5	27.7778
FRA10AC1	0	genome.wustl.edu	37	10	95445078	95445079	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	95445078	95445079	-	T	INS	FRA10AC1	ENST00000359204	human	ensembl	74_37	-1	known	frame_shift_ins	c.550_549	p.E183fs	1.000:1.000	pfam_Folate-sensitive_fs_Fra10Ac1	pfam_Folate-sensitive_fs_Fra10Ac1	-	no_errors	FRA10AC1	HGNC	ENSG00000148690				199	0	0	124	29	18.9542
CC2D2B	0	genome.wustl.edu	37	10	97779061	97779061	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	10	97779061	97779061	A	-	DEL	CC2D2B	ENST00000410012	human	ensembl	74_37	+1	known	frame_shift_del	c.624	p.S210fs	1.000	NULL	NULL	-	no_errors	CC2D2B	HGNC	ENSG00000188649				148	0	0	63	25	28.4091
PDGFD	0	genome.wustl.edu	37	11	103814312	103814312	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	103814312	103814312	T	-	DEL	PDGFD	ENST00000393158	human	ensembl	74_37	-1	known	frame_shift_del	c.640	p.I214fs	0.016	NULL	pfam_CUB_dom,pfam_PDGF/VEGF_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFD	HGNC	ENSG00000170962				50	0	0	25	11	30.5556
MSANTD4	0	genome.wustl.edu	37	11	105880739	105880739	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	105880739	105880739	A	-	DEL	MSANTD4	ENST00000301919	human	ensembl	74_37	-1	known	frame_shift_del	c.561	p.F187fs	0.903	NULL	NULL	-	no_errors	MSANTD4	HGNC	ENSG00000170903				160	0	0	103	10	8.84956
DLAT	0	genome.wustl.edu	37	11	111896977	111896977	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	111896977	111896977	A	-	DEL	DLAT	ENST00000280346	human	ensembl	74_37	+1	known	frame_shift_del	c.335	p.E115fs	1.000	pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl,tigrfam_LAT1	-	no_errors	DLAT	HGNC	ENSG00000150768				45	0	0	20	3	13.0435
CADM1	0	genome.wustl.edu	37	11	115047097	115047097	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	115047097	115047097	A	-	DEL	CADM1	ENST00000543375	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.997	-	-	-	no_errors	CADM1	HGNC	ENSG00000182985				89	0	0	46	14	23.3333
BCL9L	0	genome.wustl.edu	37	11	118770651	118770652	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	118770651	118770652	-	GG	INS	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	frame_shift_ins	c.3381_3380	p.P1128fs	0.988:0.996	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				69	0	0	15	5	25
UPK2	0	genome.wustl.edu	37	11	118827066	118827067	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	118827066	118827067	-	C	INS	UPK2	ENST00000264031	human	ensembl	74_37	+1	known	frame_shift_ins	c.6_7	p.L3fs	0.135:0.103	pfam_Uroplakin_II,pirsf_Uroplakin_II	pfam_Uroplakin_II,pirsf_Uroplakin_II	-	no_errors	UPK2	HGNC	ENSG00000110375				238	0	0	44	10	18.5185
UPK2	0	genome.wustl.edu	37	11	118827661	118827661	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	118827661	118827661	C	-	DEL	UPK2	ENST00000264031	human	ensembl	74_37	+1	known	frame_shift_del	c.145	p.C51fs	0.973	pfam_Uroplakin_II,pirsf_Uroplakin_II	pfam_Uroplakin_II,pirsf_Uroplakin_II	-	no_errors	UPK2	HGNC	ENSG00000110375				202	0	0	55	10	15.3846
CCDC153	0	genome.wustl.edu	37	11	119061043	119061043	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	119061043	119061043	G	-	DEL	CCDC153	ENST00000415318	human	ensembl	74_37	-1	known	frame_shift_del	c.599	p.P200fs	1.000	NULL	superfamily_t-SNARE	-	no_errors	CCDC153	HGNC	ENSG00000248712				397	0	0	88	19	17.757
ARNTL	0	genome.wustl.edu	37	11	13398237	13398237	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	13398237	13398237	C	-	DEL	ARNTL	ENST00000403290	human	ensembl	74_37	+1	known	frame_shift_del	c.1376	p.H461fs	1.000	NULL	pfam_PAS_fold,pfam_PAS_fold_3,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794				310	0	0	85	27	24.1071
CHRM1	0	genome.wustl.edu	37	11	62677507	62677509	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	62677507	62677509	AGA	-	DEL	CHRM1	ENST00000306960	human	ensembl	74_37	-1	known	in_frame_del	c.1066_1064	p.F355in_frame_del	0.998:1.000:1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M1_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM1	HGNC	ENSG00000168539				103	0	0	41	13	24.0741
RPS6KA4	0	genome.wustl.edu	37	11	64129351	64129351	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	64129351	64129351	C	-	DEL	RPS6KA4	ENST00000334205	human	ensembl	74_37	+1	known	frame_shift_del	c.783	p.P263fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA4	HGNC	ENSG00000162302				319	1	0.3125	87	22	20.1835
MALAT1	0	genome.wustl.edu	37	11	65266672	65266672	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	65266672	65266672	T	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				55	0	0	17	4	19.0476
MALAT1	0	genome.wustl.edu	37	11	65268696	65268696	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	65268696	65268696	T	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.048	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				134	0	0	35	9	20.4545
MAP3K11	0	genome.wustl.edu	37	11	65375538	65375538	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	65375538	65375538	A	-	DEL	MAP3K11	ENST00000309100	human	ensembl	74_37	-1	known	frame_shift_del	c.924	p.F308fs	0.998	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327				236	0	0	62	8	11.4286
SF3B2	0	genome.wustl.edu	37	11	65836146	65836146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	65836146	65836146	A	-	DEL	SF3B2	ENST00000322535	human	ensembl	74_37	+1	known	frame_shift_del	c.2618	p.K875fs	1.000	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_dom,smart_SAP_dom,smart_PSP,pfscan_SAP_dom	-	no_errors	SF3B2	HGNC	ENSG00000087365				167	1	0.595238	30	8	21.0526
NUMA1	0	genome.wustl.edu	37	11	71746965	71746965	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	71746965	71746965	C	-	DEL	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	frame_shift_del	c.25	p.A9fs	0.393	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				262	0	0	66	18	21.4286
ARHGEF17	0	genome.wustl.edu	37	11	73021527	73021527	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	73021527	73021527	C	-	DEL	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	frame_shift_del	c.1844	p.P617fs	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				206	0	0	45	15	25
ENSG00000266866	0	genome.wustl.edu	37	11	73068216	73068216	+	RNA	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	73068216	73068216	G	-	DEL	ENSG00000266866	ENST00000582555	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AP002761.1	Clone_based_ensembl_gene	ENSG00000266866				53	0	0	19	4	17.3913
DNAJB13	0	genome.wustl.edu	37	11	73676056	73676057	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	73676056	73676057	-	A	INS	DNAJB13	ENST00000339764	human	ensembl	74_37	+1	known	frame_shift_ins	c.468_469	p.I158fs	1.000:1.000	superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB13	HGNC	ENSG00000187726				184	0	0	50	15	23.0769
OR2AT4	0	genome.wustl.edu	37	11	74800161	74800161	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	74800161	74800161	G	-	DEL	OR2AT4	ENST00000305159	human	ensembl	74_37	-1	known	frame_shift_del	c.598	p.Q200fs	0.565	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2AT4	HGNC	ENSG00000171561				43	0	0	25	7	21.875
RIC3	0	genome.wustl.edu	37	11	8160039	8160040	+	RNA	DEL	AA	AA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	8160039	8160040	AA	-	DEL	RIC3	ENST00000524799	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RIC3	HGNC	ENSG00000166405				16	0	0	9	6	40
SYTL2	0	genome.wustl.edu	37	11	85445089	85445089	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	85445089	85445089	A	-	DEL	SYTL2	ENST00000316356	human	ensembl	74_37	-1	known	frame_shift_del	c.1283	p.L428fs	0.002	NULL	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	-	no_errors	SYTL2	HGNC	ENSG00000137501				172	0	0	82	31	27.4336
WEE1	0	genome.wustl.edu	37	11	9603177	9603177	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	11	9603177	9603177	T	-	DEL	WEE1	ENST00000450114	human	ensembl	74_37	+1	known	frame_shift_del	c.1240	p.L414fs	0.990	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	-	no_errors	WEE1	HGNC	ENSG00000166483				138	0	0	57	19	25
ACACB	0	genome.wustl.edu	37	12	109617122	109617122	+	RNA	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	109617122	109617122	G	-	DEL	ACACB	ENST00000543080	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ACACB	HGNC	ENSG00000076555				32	0	0	11	5	31.25
TAS2R14	0	genome.wustl.edu	37	12	11090836	11090836	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	11090836	11090836	T	-	DEL	TAS2R14	ENST00000381852	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TAS2R14	HGNC	ENSG00000212127				34	0	0	22	14	38.8889
PRB2	0	genome.wustl.edu	37	12	11546764	11546764	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	11546764	11546764	G	-	DEL	PRB2	ENST00000389362	human	ensembl	74_37	-1	known	frame_shift_del	c.248	p.P83fs	0.749	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335				1132	0	0	429	55	11.3636
WDR66	0	genome.wustl.edu	37	12	122386901	122386901	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	122386901	122386901	T	-	DEL	WDR66	ENST00000288912	human	ensembl	74_37	+1	known	frame_shift_del	c.1203	p.F402fs	0.046	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023				136	0	0	52	22	29.7297
ARL6IP4	0	genome.wustl.edu	37	12	123464969	123464970	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	123464969	123464970	GC	-	DEL	ARL6IP4	ENST00000315580	human	ensembl	74_37	+1	known	frame_shift_del	c.35_36	p.E15fs	0.002:0.000	NULL	pfam_Nucl_RNA-splicing_assoc_SR-25	-	no_errors	ARL6IP4	HGNC	ENSG00000182196				65	0	0	5	6	54.5455
NOC4L	0	genome.wustl.edu	37	12	132632428	132632428	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	132632428	132632428	C	-	DEL	NOC4L	ENST00000330579	human	ensembl	74_37	+1	known	frame_shift_del	c.607	p.A205fs	0.052	superfamily_ARM-type_fold	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	NOC4L	HGNC	ENSG00000184967				42	0	0	14	4	22.2222
EMP1	0	genome.wustl.edu	37	12	13364427	13364428	+	RNA	DEL	AA	AA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	13364427	13364428	AA	-	DEL	EMP1	ENST00000542289	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	EMP1	HGNC	ENSG00000134531				135	0	0	108	33	23.4043
SLCO1A2	0	genome.wustl.edu	37	12	21428275	21428275	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	21428275	21428275	A	-	DEL	SLCO1A2	ENST00000390670	human	ensembl	74_37	-1	known	frame_shift_del	c.1688	p.F563fs	0.000	pfscan_MFS_dom	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1A2	HGNC	ENSG00000084453				26	0	0	15	8	34.7826
ITPR2	0	genome.wustl.edu	37	12	26640046	26640046	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	26640046	26640046	T	-	DEL	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	frame_shift_del	c.5509	p.R1837fs	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				196	1	0.507614	85	20	19.0476
ITPR2	0	genome.wustl.edu	37	12	26640149	26640150	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	26640149	26640150	-	T	INS	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	frame_shift_ins	c.5406_5405	p.S1803fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				54	0	0	40	9	18.3673
TM7SF3	0	genome.wustl.edu	37	12	27152717	27152717	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	27152717	27152717	A	-	DEL	TM7SF3	ENST00000539399	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TM7SF3	HGNC	ENSG00000064115				23	0	0	6	7	53.8462
DENND5B	0	genome.wustl.edu	37	12	31604972	31604973	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	31604972	31604973	-	A	INS	DENND5B	ENST00000306833	human	ensembl	74_37	-1	known	frame_shift_ins	c.1636_1635	p.T545fs	1.000:1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_PLAT/LH2_dom,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456				172	0	0	56	25	30.8642
KMT2D	0	genome.wustl.edu	37	12	49438211	49438211	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	49438211	49438211	T	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.5058	p.K1686fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				183	0	0	61	21	25.6098
KCNH3	0	genome.wustl.edu	37	12	49935520	49935520	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	49935520	49935520	G	-	DEL	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	frame_shift_del	c.418	p.G141fs	1.000	pfscan_PAS-assoc_C	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519				671	0	0	113	35	23.6486
AAAS	0	genome.wustl.edu	37	12	53701391	53701391	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	53701391	53701391	C	-	DEL	AAAS	ENST00000209873	human	ensembl	74_37	-1	known	frame_shift_del	c.1523	p.G508fs	0.664	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AAAS	HGNC	ENSG00000094914				311	0	0	79	22	21.7822
HOXC10	0	genome.wustl.edu	37	12	54383304	54383304	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	54383304	54383304	T	-	DEL	HOXC10	ENST00000511575	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	HOXC10	HGNC	ENSG00000180818				27	0	0	11	4	26.6667
ATP5B	0	genome.wustl.edu	37	12	57036769	57036770	+	RNA	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	57036769	57036770	-	A	INS	ATP5B	ENST00000550162	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.378:0.657	-	-	-	no_errors	ATP5B	HGNC	ENSG00000110955				9	0	0	2	3	60
LRP1	0	genome.wustl.edu	37	12	57572241	57572242	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	57572241	57572242	-	G	INS	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	frame_shift_ins	c.4461_4462	p.E1489fs	0.705:1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				199	0	0	75	23	23.4694
R3HDM2	0	genome.wustl.edu	37	12	57648750	57648750	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	57648750	57648750	C	-	DEL	R3HDM2	ENST00000347140	human	ensembl	74_37	-1	known	frame_shift_del	c.2737	p.D913fs	0.998	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912				116	1	0.854701	39	17	30.3571
CEP290	0	genome.wustl.edu	37	12	88443060	88443060	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	88443060	88443060	T	-	DEL	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_del	c.7347	p.K2449fs	0.999	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				198	0	0	99	36	26.6667
CEP290	0	genome.wustl.edu	37	12	88524079	88524079	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	88524079	88524079	T	-	DEL	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_del	c.635	p.N212fs	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				280	1	0.355872	154	35	18.5185
VEZT	0	genome.wustl.edu	37	12	95660289	95660289	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	95660289	95660289	A	-	DEL	VEZT	ENST00000436874	human	ensembl	74_37	+1	known	frame_shift_del	c.591	p.K199fs	0.911	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203				323	2	0.615385	179	49	21.4912
CCDC38	0	genome.wustl.edu	37	12	96292432	96292432	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	12	96292432	96292432	T	-	DEL	CCDC38	ENST00000344280	human	ensembl	74_37	-1	known	frame_shift_del	c.447	p.A150fs	0.125	NULL	NULL	-	no_errors	CCDC38	HGNC	ENSG00000165972				167	0	0	94	24	20.339
RAB20	0	genome.wustl.edu	37	13	111176500	111176500	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	111176500	111176500	C	-	DEL	RAB20	ENST00000267328	human	ensembl	74_37	-1	known	frame_shift_del	c.217	p.A73fs	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB20	HGNC	ENSG00000139832				159	0	0	63	16	20.2532
GJA3	0	genome.wustl.edu	37	13	20717089	20717091	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	20717089	20717091	CTC	-	DEL	GJA3	ENST00000241125	human	ensembl	74_37	-1	known	in_frame_del	c.339_337	p.E113in_frame_del	0.426:0.666:0.914	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin46	-	no_errors	GJA3	HGNC	ENSG00000121743				23	0	0	8	3	27.2727
XPO4	0	genome.wustl.edu	37	13	21437114	21437114	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	21437114	21437114	T	-	DEL	XPO4	ENST00000490513	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	XPO4	HGNC	ENSG00000132953				35	0	0	23	6	20.6897
PARP4	0	genome.wustl.edu	37	13	25030500	25030500	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	25030500	25030500	T	-	DEL	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	frame_shift_del	c.2541	p.K847fs	0.996	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				135	0	0	58	17	22.6667
BRCA2	0	genome.wustl.edu	37	13	32907421	32907421	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	32907421	32907421	A	-	DEL	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	frame_shift_del	c.1806	p.I605fs	0.544	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				66	0	0	37	15	28.8462
BRCA2	0	genome.wustl.edu	37	13	32911073	32911074	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	32911073	32911074	-	A	INS	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	frame_shift_ins	c.2581_2582	p.N863fs	0.000:0.000	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				89	0	0	47	24	33.8028
PDS5B	0	genome.wustl.edu	37	13	33338694	33338694	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	33338694	33338694	A	-	DEL	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	frame_shift_del	c.3586	p.S1198fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				105	0	0	38	15	28.3019
PDS5B	0	genome.wustl.edu	37	13	33344286	33344286	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	33344286	33344286	A	-	DEL	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	frame_shift_del	c.3652	p.T1220fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				133	0	0	57	8	12.3077
ZC3H13	0	genome.wustl.edu	37	13	46543661	46543661	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	46543661	46543661	T	-	DEL	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	frame_shift_del	c.3018	p.K1006fs	0.998	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				97	0	0	54	25	31.6456
CAB39L	0	genome.wustl.edu	37	13	49933960	49933960	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	49933960	49933960	T	-	DEL	CAB39L	ENST00000347776	human	ensembl	74_37	-1	known	frame_shift_del	c.285	p.D96fs	1.000	pfam_Mo25,superfamily_ARM-type_fold	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39L	HGNC	ENSG00000102547				111	0	0	65	11	14.4737
MYCBP2	0	genome.wustl.edu	37	13	77844149	77844149	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	77844149	77844149	T	-	DEL	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	frame_shift_del	c.1238	p.K413fs	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				285	0	0	118	34	22.3684
SLITRK1	0	genome.wustl.edu	37	13	84455642	84455642	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	13	84455642	84455642	T	-	DEL	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				199	0	0	64	24	27.2727
SUPT16H	0	genome.wustl.edu	37	14	21820849	21820850	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	21820849	21820850	-	G	INS	SUPT16H	ENST00000216297	human	ensembl	74_37	-1	known	frame_shift_ins	c.3127_3126	p.K1042fs	1.000:1.000	NULL	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201				495	0	0	153	58	27.4882
HEATR5A	0	genome.wustl.edu	37	14	31856515	31856515	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	31856515	31856515	A	-	DEL	HEATR5A	ENST00000389961	human	ensembl	74_37	-1	known	frame_shift_del	c.982	p.S328fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493				136	0	0	45	10	18.1818
BAZ1A	0	genome.wustl.edu	37	14	35245127	35245128	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	35245127	35245128	-	A	INS	BAZ1A	ENST00000360310	human	ensembl	74_37	-1	known	frame_shift_ins	c.2831_2830	p.S944fs	1.000:1.000	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604				126	0	0	48	13	21.3115
FBXO33	0	genome.wustl.edu	37	14	39871611	39871612	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	39871611	39871612	-	T	INS	FBXO33	ENST00000298097	human	ensembl	74_37	-1	known	frame_shift_ins	c.704_703	p.I235fs	1.000:1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO33	HGNC	ENSG00000165355				119	0	0	43	14	24.5614
PELI2	0	genome.wustl.edu	37	14	56757067	56757067	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	56757067	56757067	G	-	DEL	PELI2	ENST00000267460	human	ensembl	74_37	+1	known	frame_shift_del	c.589	p.G198fs	0.996	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI2	HGNC	ENSG00000139946				272	0	0	82	30	26.7857
ZBTB1	0	genome.wustl.edu	37	14	64988802	64988802	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	64988802	64988802	A	-	DEL	ZBTB1	ENST00000394712	human	ensembl	74_37	+1	known	frame_shift_del	c.580	p.S196fs	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB1	HGNC	ENSG00000126804				158	0	0	82	21	20.3883
PLEKHH1	0	genome.wustl.edu	37	14	68053849	68053850	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	68053849	68053850	-	C	INS	PLEKHH1	ENST00000329153	human	ensembl	74_37	+1	known	frame_shift_ins	c.3992_3993	p.T1334fs	0.000:0.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690				76	0	0	25	7	21.875
ELMSAN1	0	genome.wustl.edu	37	14	74205773	74205773	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	74205773	74205773	G	-	DEL	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	frame_shift_del	c.939	p.N314fs	0.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				30	0	0	11	5	31.25
ENSG00000258891	0	genome.wustl.edu	37	14	74363249	74363249	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	74363249	74363249	T	-	DEL	ENSG00000258891	ENST00000554009	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP5-1021I20.5	Clone_based_vega_gene	ENSG00000258891				138	0	0	60	16	21.0526
YLPM1	0	genome.wustl.edu	37	14	75230562	75230562	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	75230562	75230562	A	-	DEL	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	frame_shift_del	c.370	p.K124fs	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				306	0	0	78	24	23.5294
PGF	0	genome.wustl.edu	37	14	75412941	75412942	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	75412941	75412942	TC	-	DEL	PGF	ENST00000555567	human	ensembl	74_37	-1	known	frame_shift_del	c.460_459	p.K154fs	1.000:1.000	NULL	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PGF	HGNC	ENSG00000119630				176	0	0	43	14	24.5614
FOXN3	0	genome.wustl.edu	37	14	89878534	89878534	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	89878534	89878534	G	-	DEL	FOXN3	ENST00000261302	human	ensembl	74_37	-1	known	frame_shift_del	c.287	p.P96fs	0.998	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254				147	0	0	61	24	28.2353
UNC79	0	genome.wustl.edu	37	14	94121610	94121610	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	94121610	94121610	G	-	DEL	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	frame_shift_del	c.6496	p.G2167fs	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				182	0	0	67	32	32.3232
ATG2B	0	genome.wustl.edu	37	14	96788614	96788614	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	14	96788614	96788614	A	-	DEL	ATG2B	ENST00000488421	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG2B	HGNC	ENSG00000066739				101	0	0	43	18	29.5082
LOC101927079	0	genome.wustl.edu	37	15	22332412	22332413	+	RNA	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	22332412	22332413	-	A	INS	LOC101927079	ENST00000558896	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.686:0.693	-	-	-	no_errors	RP11-69H14.6	Clone_based_vega_gene	ENSG00000259176				116	0	0	78	16	17.0213
SNHG14	0	genome.wustl.edu	37	15	25227367	25227367	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	25227367	25227367	T	-	DEL	SNHG14	ENST00000551361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				19	0	0	11	3	21.4286
RMDN3	0	genome.wustl.edu	37	15	41029894	41029894	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	41029894	41029894	T	-	DEL	RMDN3	ENST00000260385	human	ensembl	74_37	-1	known	frame_shift_del	c.1156	p.T386fs	1.000	NULL	NULL	-	no_errors	RMDN3	HGNC	ENSG00000137824				134	0	0	53	6	10.1695
ENSG00000259241	0	genome.wustl.edu	37	15	51987960	51987961	+	RNA	DEL	AA	AA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	51987960	51987961	AA	-	DEL	ENSG00000259241	ENST00000559918	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.012	-	-	-	no_errors	RP11-313P18.2	Clone_based_vega_gene	ENSG00000259241				25	0	0	6	10	62.5
PARP16	0	genome.wustl.edu	37	15	65578609	65578610	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	65578609	65578610	AC	-	DEL	PARP16	ENST00000261888	human	ensembl	74_37	-1	known	frame_shift_del	c.156_155	p.C52fs	0.996:0.997	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP16	HGNC	ENSG00000138617				55	0	0	10	7	41.1765
MESDC2	0	genome.wustl.edu	37	15	81271633	81271633	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	81271633	81271633	T	-	DEL	MESDC2	ENST00000261758	human	ensembl	74_37	-1	known	frame_shift_del	c.632	p.K211fs	1.000	pfam_Mesoderm_development_cand-2	pfam_Mesoderm_development_cand-2	-	no_errors	MESDC2	HGNC	ENSG00000117899				136	1	0.729927	49	10	16.9492
AKAP13	0	genome.wustl.edu	37	15	86123175	86123177	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	86123175	86123177	GAA	-	DEL	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	in_frame_del	c.1876_1878	p.E627in_frame_del	0.000:0.000:0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				162	0	0	86	37	30.0813
IQGAP1	0	genome.wustl.edu	37	15	91018049	91018049	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	15	91018049	91018049	T	-	DEL	IQGAP1	ENST00000560020	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.121	-	-	-	no_errors	IQGAP1	HGNC	ENSG00000140575				9	0	0	12	7	36.8421
ATP2A1	0	genome.wustl.edu	37	16	28909397	28909397	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	28909397	28909397	C	-	DEL	ATP2A1	ENST00000357084	human	ensembl	74_37	+1	known	frame_shift_del	c.1496	p.P500fs	1.000	superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Ca-transp_IIA	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A1	HGNC	ENSG00000196296				294	0	0	86	18	17.3077
INO80E	0	genome.wustl.edu	37	16	30016653	30016653	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	30016653	30016653	C	-	DEL	INO80E	ENST00000563197	human	ensembl	74_37	+1	known	frame_shift_del	c.625	p.T212fs	1.000	NULL	NULL	-	no_errors	INO80E	HGNC	ENSG00000169592				10	0	0	4	3	42.8571
AKTIP	0	genome.wustl.edu	37	16	53532414	53532414	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	53532414	53532414	T	-	DEL	AKTIP	ENST00000300245	human	ensembl	74_37	-1	known	frame_shift_del	c.137	p.N46fs	1.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	AKTIP	HGNC	ENSG00000166971				319	0	0	126	31	19.7452
CDH16	0	genome.wustl.edu	37	16	66947518	66947519	+	Splice_Site	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	66947518	66947519	-	G	INS	CDH16	ENST00000299752	human	ensembl	74_37	-1	known	splice_site_ins	c.781-3_781-2	e7-2	0.973:0.077	-	-	-	no_errors	CDH16	HGNC	ENSG00000166589				139	0	0	54	21	28
PLA2G15	0	genome.wustl.edu	37	16	68289855	68289855	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	68289855	68289855	G	-	DEL	PLA2G15	ENST00000219345	human	ensembl	74_37	+1	known	frame_shift_del	c.689	p.G232fs	1.000	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066				74	0	0	28	5	15.1515
ATP2C2	0	genome.wustl.edu	37	16	84472790	84472809	+	Frame_Shift_Del	DEL	TCCAGAGGGTCTGCCCATCG	TCCAGAGGGTCTGCCCATCG	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	TCCAGAGGGTCTGCCCATCG	TCCAGAGGGTCTGCCCATCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	84472790	84472809	TCCAGAGGGTCTGCCCATCG	-	DEL	ATP2C2	ENST00000262429	human	ensembl	74_37	+1	known	frame_shift_del	c.1005_1024	p.P336fs	0.953:0.999:0.998:0.018:0.996:1.000:0.998:1.000:1.000:0.417:0.991:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.998:1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C2	HGNC	ENSG00000064270				183	0	0	39	8	17.0213
TLDC1	0	genome.wustl.edu	37	16	84514302	84514303	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	84514302	84514303	-	C	INS	TLDC1	ENST00000343629	human	ensembl	74_37	-1	known	frame_shift_ins	c.1090_1089	p.Q363fs	1.000:0.148	pfam_TLDc,smart_TLDc	pfam_TLDc,smart_TLDc	-	no_errors	TLDC1	HGNC	ENSG00000140950				106	0	0	24	9	27.2727
SNAI3-AS1	0	genome.wustl.edu	37	16	88752838	88752838	+	RNA	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	88752838	88752838	G	-	DEL	SNAI3-AS1	ENST00000567997	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNAI3-AS1	HGNC	ENSG00000260630				54	0	0	12	3	20
SPATA2L	0	genome.wustl.edu	37	16	89764374	89764374	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	16	89764374	89764374	G	-	DEL	SPATA2L	ENST00000289805	human	ensembl	74_37	-1	known	frame_shift_del	c.643	p.R215fs	0.010	NULL	NULL	-	no_errors	SPATA2L	HGNC	ENSG00000158792				85	0	0	18	6	25
ENSG00000262920	0	genome.wustl.edu	37	17	171283	171283	+	RNA	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	171283	171283	C	-	DEL	ENSG00000262920	ENST00000570501	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-1260E13.1	Clone_based_vega_gene	ENSG00000262920				41	0	0	8	4	33.3333
CLUH	0	genome.wustl.edu	37	17	2601322	2601322	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	2601322	2601322	G	-	DEL	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	frame_shift_del	c.1715	p.P572fs	1.000	NULL	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361				51	0	0	4	2	33.3333
NLK	0	genome.wustl.edu	37	17	26449740	26449740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	26449740	26449740	T	-	DEL	NLK	ENST00000407008	human	ensembl	74_37	+1	known	frame_shift_del	c.570	p.F192fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NLK	HGNC	ENSG00000087095				204	0	0	108	15	12.1951
TMEM97	0	genome.wustl.edu	37	17	26653807	26653807	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	26653807	26653807	A	-	DEL	TMEM97	ENST00000226230	human	ensembl	74_37	+1	known	frame_shift_del	c.519	p.K176fs	1.000	pirsf_Transmembrane_6/97	pfam_Transmembrane_6/97,pirsf_Transmembrane_6/97	-	no_errors	TMEM97	HGNC	ENSG00000109084				131	0	0	44	15	25.4237
SEZ6	0	genome.wustl.edu	37	17	27284223	27284224	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	27284223	27284224	-	G	INS	SEZ6	ENST00000317338	human	ensembl	74_37	-1	known	frame_shift_ins	c.2532_2531	p.E845fs	0.118:0.978	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_CUB_dom,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6	HGNC	ENSG00000063015				200	0	0	48	22	31.4286
ENSG00000266981	0	genome.wustl.edu	37	17	33518082	33518082	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	33518082	33518082	A	-	DEL	ENSG00000266981	ENST00000590144	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.853	-	-	-	no_errors	RP11-799D4.2	Clone_based_vega_gene	ENSG00000266981				152	0	0	52	26	33.3333
SLFN13	0	genome.wustl.edu	37	17	33768996	33768996	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	33768996	33768996	C	-	DEL	SLFN13	ENST00000285013	human	ensembl	74_37	-1	known	frame_shift_del	c.1508	p.G503fs	0.052	NULL	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN13	HGNC	ENSG00000154760				173	0	0	93	9	8.82353
ITGAE	0	genome.wustl.edu	37	17	3655036	3655036	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	3655036	3655036	G	-	DEL	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	frame_shift_del	c.1801	p.L601fs	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAE	HGNC	ENSG00000083457				221	0	0	45	11	19.6429
TOP2A	0	genome.wustl.edu	37	17	38552642	38552642	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	38552642	38552642	T	-	DEL	TOP2A	ENST00000423485	human	ensembl	74_37	-1	known	frame_shift_del	c.3613	p.T1205fs	0.002	NULL	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2A	HGNC	ENSG00000131747				168	1	0.591716	90	26	22.4138
HEXIM2	0	genome.wustl.edu	37	17	43240209	43240210	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	43240209	43240210	-	C	INS	HEXIM2	ENST00000307275	human	ensembl	74_37	+1	known	frame_shift_ins	c.49_50	p.L18fs	0.580:0.885	NULL	NULL	-	no_errors	HEXIM2	HGNC	ENSG00000168517				232	0	0	65	17	20.7317
TRIM25	0	genome.wustl.edu	37	17	54969424	54969424	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	54969424	54969424	C	-	DEL	TRIM25	ENST00000316881	human	ensembl	74_37	-1	known	frame_shift_del	c.1530	p.I511fs	0.997	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM25	HGNC	ENSG00000121060				213	0	0	72	13	15.2941
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				369	1	0.27027	56	58	50.8772
RPS6KB1	0	genome.wustl.edu	37	17	58022829	58022829	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	58022829	58022829	A	-	DEL	RPS6KB1	ENST00000225577	human	ensembl	74_37	+1	known	frame_shift_del	c.1290	p.I432fs	1.000	pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB1	HGNC	ENSG00000108443				49	0	0	33	8	19.5122
PPM1D	0	genome.wustl.edu	37	17	58740439	58740439	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	58740439	58740439	T	-	DEL	PPM1D	ENST00000305921	human	ensembl	74_37	+1	known	frame_shift_del	c.1344	p.L450fs	0.970	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1D	HGNC	ENSG00000170836				174	0	0	87	31	26.2712
TEX2	0	genome.wustl.edu	37	17	62272340	62272340	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	62272340	62272340	T	-	DEL	TEX2	ENST00000258991	human	ensembl	74_37	-1	known	frame_shift_del	c.1760	p.N587fs	1.000	NULL	pfam_DUF2404	-	no_errors	TEX2	HGNC	ENSG00000136478				163	0	0	71	25	26.0417
MPDU1	0	genome.wustl.edu	37	17	7489033	7489034	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	17	7489033	7489034	-	T	INS	MPDU1	ENST00000576066	human	ensembl	74_37	+1	known	frame_shift_ins	c.124_125	p.S44fs	0.000:0.000	NULL	NULL	-	no_errors	MPDU1	HGNC	ENSG00000129255				136	0	0	50	10	16.6667
CEP192	0	genome.wustl.edu	37	18	13052948	13052949	+	In_Frame_Ins	INS	-	-	CAG			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	13052948	13052949	-	CAG	INS	CEP192	ENST00000506447	human	ensembl	74_37	+1	known	in_frame_ins	c.3048_3049	p.1020in_frame_insQ	0.004:0.003	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639				419	0	0	156	37	19.171
TRAPPC8	0	genome.wustl.edu	37	18	29453418	29453418	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	29453418	29453418	A	-	DEL	TRAPPC8	ENST00000283351	human	ensembl	74_37	-1	known	frame_shift_del	c.2037	p.F679fs	1.000	NULL	NULL	-	no_errors	TRAPPC8	HGNC	ENSG00000153339				64	0	0	23	11	32.3529
ENSG00000263606	0	genome.wustl.edu	37	18	2946534	2946534	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	2946534	2946534	T	-	DEL	ENSG00000263606	ENST00000581139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.978	-	-	-	no_errors	RP11-737O24.3	Clone_based_vega_gene	ENSG00000263606				37	0	0	15	6	28.5714
ASXL3	0	genome.wustl.edu	37	18	31319986	31319986	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	31319986	31319986	A	-	DEL	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	frame_shift_del	c.2618	p.V876fs	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				93	0	0	52	17	24.6377
DTNA	0	genome.wustl.edu	37	18	32395860	32395860	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	32395860	32395860	T	-	DEL	DTNA	ENST00000592114	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	DTNA	HGNC	ENSG00000134769				88	0	0	63	20	24.0964
DTNA	0	genome.wustl.edu	37	18	32455332	32455332	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	32455332	32455332	G	-	DEL	DTNA	ENST00000269190	human	ensembl	74_37	+1	known	frame_shift_del	c.1795	p.G600fs	1.000	pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNA	HGNC	ENSG00000134769				113	0	0	74	10	11.9048
SETBP1	0	genome.wustl.edu	37	18	42281720	42281720	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	42281720	42281720	G	-	DEL	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	frame_shift_del	c.409	p.D138fs	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				183	1	0.543478	62	12	16.2162
MBD1	0	genome.wustl.edu	37	18	47797892	47797892	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	47797892	47797892	T	-	DEL	MBD1	ENST00000424334	human	ensembl	74_37	-1	known	frame_shift_del	c.1950	p.K650fs	0.848	NULL	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644				419	1	0.238095	204	56	21.5385
ADNP2	0	genome.wustl.edu	37	18	77894261	77894261	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	18	77894261	77894261	C	-	DEL	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	frame_shift_del	c.965	p.P324fs	0.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				167	1	0.595238	65	22	25.2874
ABCA7	0	genome.wustl.edu	37	19	1058906	1058906	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	1058906	1058906	G	-	DEL	ABCA7	ENST00000263094	human	ensembl	74_37	+1	known	frame_shift_del	c.5367	p.D1791fs	0.915	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687				153	0	0	35	9	20.4545
ZNF878	0	genome.wustl.edu	37	19	12155504	12155504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	12155504	12155504	A	-	DEL	ZNF878	ENST00000602107	human	ensembl	74_37	-1	known	frame_shift_del	c.853	p.S285fs	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446				179	0	0	105	36	25.5319
MIR27A	0	genome.wustl.edu	37	19	13947256	13947256	+	RNA	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	13947256	13947256	G	-	DEL	MIR27A	ENST00000385073	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.760	-	-	-	no_errors	MIR27A	HGNC	ENSG00000207808				48	0	0	11	6	35.2941
CYP4F22	0	genome.wustl.edu	37	19	15648181	15648181	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	15648181	15648181	C	-	DEL	CYP4F22	ENST00000269703	human	ensembl	74_37	+1	known	frame_shift_del	c.377	p.K128fs	0.805	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F22	HGNC	ENSG00000171954				212	0	0	73	22	23.1579
ZNF90	0	genome.wustl.edu	37	19	20228702	20228702	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	20228702	20228702	A	-	DEL	ZNF90	ENST00000418063	human	ensembl	74_37	+1	known	frame_shift_del	c.339	p.G116fs	0.054	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988				62	0	0	15	12	44.4444
URI1	0	genome.wustl.edu	37	19	30500144	30500146	+	In_Frame_Del	DEL	GAC	GAC	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	30500144	30500146	GAC	-	DEL	URI1	ENST00000542441	human	ensembl	74_37	+1	known	in_frame_del	c.919_921	p.D310in_frame_del	0.023:0.013:0.000	NULL	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin	-	no_errors	URI1	HGNC	ENSG00000105176				52	0	0	40	4	9.09091
FFAR2	0	genome.wustl.edu	37	19	35941539	35941540	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	35941539	35941540	-	G	INS	FFAR2	ENST00000246549	human	ensembl	74_37	+1	known	frame_shift_ins	c.923_924	p.T310fs	0.554:0.176	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_GPR40-rel_orph	-	no_errors	FFAR2	HGNC	ENSG00000126262				153	0	0	51	18	26.087
ZNF793	0	genome.wustl.edu	37	19	38028415	38028415	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	38028415	38028415	T	-	DEL	ZNF793	ENST00000445217	human	ensembl	74_37	+1	known	frame_shift_del	c.855	p.C288fs	0.222	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF793	HGNC	ENSG00000188227				86	0	0	25	12	32.4324
PPP1R14A	0	genome.wustl.edu	37	19	38741932	38741933	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	38741932	38741933	-	G	INS	PPP1R14A	ENST00000591291	human	ensembl	74_37	-1	putative	frame_shift_ins	c.345_344	p.D116fs	0.000:0.000	NULL	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	-	no_errors	PPP1R14A	HGNC	ENSG00000167641				34	0	0	4	5	55.5556
PIAS4	0	genome.wustl.edu	37	19	4037644	4037644	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	4037644	4037644	C	-	DEL	PIAS4	ENST00000262971	human	ensembl	74_37	+1	known	frame_shift_del	c.1304	p.S437fs	0.992	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS4	HGNC	ENSG00000105229				107	0	0	38	4	9.52381
ZNF234	0	genome.wustl.edu	37	19	44660629	44660629	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	44660629	44660629	A	-	DEL	ZNF234	ENST00000426739	human	ensembl	74_37	+1	known	frame_shift_del	c.460	p.K155fs	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF234	HGNC	ENSG00000263002				142	0	0	91	20	18.018
FAM83E	0	genome.wustl.edu	37	19	49107038	49107038	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	49107038	49107038	G	-	DEL	FAM83E	ENST00000263266	human	ensembl	74_37	-1	known	frame_shift_del	c.889	p.Q297fs	0.001	NULL	pfam_DUF1669,superfamily_Acyl_CoA_acyltransferase	-	no_errors	FAM83E	HGNC	ENSG00000105523				65	0	0	24	7	22.5806
MAMSTR	0	genome.wustl.edu	37	19	49218105	49218106	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	49218105	49218106	-	G	INS	MAMSTR	ENST00000318083	human	ensembl	74_37	-1	known	frame_shift_ins	c.486_485	p.H163fs	0.043:0.036	NULL	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	MAMSTR	HGNC	ENSG00000176909				303	0	0	54	21	28
ZNF473	0	genome.wustl.edu	37	19	50548684	50548684	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	50548684	50548684	T	-	DEL	ZNF473	ENST00000270617	human	ensembl	74_37	+1	known	frame_shift_del	c.984	p.F329fs	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528				309	0	0	87	40	31.4961
NLRP11	0	genome.wustl.edu	37	19	56321510	56321511	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	56321510	56321511	CT	-	DEL	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	frame_shift_del	c.466_465	p.R155fs	0.036:0.013	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873				63	0	0	32	5	13.5135
C19orf70	0	genome.wustl.edu	37	19	5679654	5679654	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	5679654	5679654	G	-	DEL	C19orf70	ENST00000309324	human	ensembl	74_37	-1	known	frame_shift_del	c.150	p.A51fs	0.000	NULL	NULL	-	no_errors	C19orf70	HGNC	ENSG00000174917				199	0	0	26	23	46.9388
ZNF530	0	genome.wustl.edu	37	19	58118568	58118568	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	58118568	58118568	A	-	DEL	ZNF530	ENST00000332854	human	ensembl	74_37	+1	known	frame_shift_del	c.1675	p.N560fs	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF530	HGNC	ENSG00000183647				181	0	0	67	38	36.1905
DENND1C	0	genome.wustl.edu	37	19	6468936	6468936	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	6468936	6468936	C	-	DEL	DENND1C	ENST00000381480	human	ensembl	74_37	-1	known	frame_shift_del	c.1436	p.G479fs	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744				61	0	0	13	6	31.5789
MAP2K7	0	genome.wustl.edu	37	19	7976149	7976149	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	7976149	7976149	C	-	DEL	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	frame_shift_del	c.996	p.P334fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				291	0	0	47	12	20.339
MAP2K7	0	genome.wustl.edu	37	19	7977071	7977073	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	19	7977071	7977073	AAG	-	DEL	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	in_frame_del	c.1243_1245	p.K415in_frame_del	1.000:1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				310	0	0	57	22	27.8481
ANAPC1	0	genome.wustl.edu	37	2	112614257	112614258	+	Splice_Site	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	112614257	112614258	-	T	INS	ANAPC1	ENST00000341068	human	ensembl	74_37	-1	known	splice_site_ins	c.1450-2_1450-1	e12-1	0.994:0.992	-	-	-	no_errors	ANAPC1	HGNC	ENSG00000153107				61	0	0	61	7	10.2941
ROCK2	0	genome.wustl.edu	37	2	11389836	11389837	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	11389836	11389837	-	A	INS	ROCK2	ENST00000315872	human	ensembl	74_37	-1	known	frame_shift_ins	c.413_412	p.W138fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Rho-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318				264	0	0	122	38	23.75
IWS1	0	genome.wustl.edu	37	2	128238676	128238676	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	128238676	128238676	T	-	DEL	IWS1	ENST00000295321	human	ensembl	74_37	-1	known	frame_shift_del	c.2404	p.S802fs	1.000	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166				191	0	0	63	29	31.5217
IWS1	0	genome.wustl.edu	37	2	128252502	128252502	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	128252502	128252502	T	-	DEL	IWS1	ENST00000295321	human	ensembl	74_37	-1	known	frame_shift_del	c.1745	p.K582fs	1.000	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166				140	0	0	49	16	24.6154
IWS1	0	genome.wustl.edu	37	2	128262790	128262790	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	128262790	128262790	G	-	DEL	IWS1	ENST00000295321	human	ensembl	74_37	-1	known	frame_shift_del	c.689	p.P230fs	0.000	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166				446	0	0	183	58	24.0664
ENSG00000231731	0	genome.wustl.edu	37	2	128263364	128263366	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	128263364	128263366	AAA	-	DEL	ENSG00000231731	ENST00000599001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.233:0.319:0.309	-	-	-	no_errors	AC010976.2	Clone_based_vega_gene	ENSG00000231731				65	0	0	46	28	37.8378
AMER3	0	genome.wustl.edu	37	2	131520225	131520225	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	131520225	131520225	G	-	DEL	AMER3	ENST00000321420	human	ensembl	74_37	+1	known	frame_shift_del	c.580	p.R196fs	0.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER3	HGNC	ENSG00000178171				122	1	0.813008	44	13	22.807
POTEE	0	genome.wustl.edu	37	2	132021451	132021451	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	132021451	132021451	C	-	DEL	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	frame_shift_del	c.2423	p.L810fs	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219				410	0	0	142	28	16.4706
GPR39	0	genome.wustl.edu	37	2	133402811	133402811	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	133402811	133402811	T	-	DEL	GPR39	ENST00000329321	human	ensembl	74_37	+1	known	frame_shift_del	c.994	p.F333fs	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840				165	0	0	60	19	24.0506
GPR39	0	genome.wustl.edu	37	2	133403596	133403596	+	RNA	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	133403596	133403596	G	-	DEL	GPR39	ENST00000470071	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPR39	HGNC	ENSG00000183840				54	0	0	15	13	46.4286
HNMT	0	genome.wustl.edu	37	2	138758556	138758558	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	138758556	138758558	GTT	-	DEL	HNMT	ENST00000280097	human	ensembl	74_37	+1	known	in_frame_del	c.259_261	p.V88in_frame_del	1.000:1.000:0.998	pfam_Methyltransf_12,pirsf_Histamine_N-methyltransferase	pfam_Methyltransf_12,pirsf_Histamine_N-methyltransferase	-	no_errors	HNMT	HGNC	ENSG00000150540				86	0	0	48	17	26.1538
BAZ2B	0	genome.wustl.edu	37	2	160335159	160335161	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	160335159	160335161	AGA	-	DEL	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	in_frame_del	c.72_70	p.S24in_frame_del	1.000:1.000:1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636				238	0	0	73	35	32.4074
XIRP2	0	genome.wustl.edu	37	2	168099958	168099958	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	168099958	168099958	G	-	DEL	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	frame_shift_del	c.2056	p.D688fs	0.997	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				182	0	0	81	27	25
XIRP2	0	genome.wustl.edu	37	2	168103736	168103737	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	168103736	168103737	-	A	INS	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	frame_shift_ins	c.5834_5835	p.D1948fs	0.000:0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				101	0	0	39	10	20.4082
DYNC1I2	0	genome.wustl.edu	37	2	172549339	172549339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	172549339	172549339	A	-	DEL	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	frame_shift_del	c.161	p.R57fs	1.000	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				39	0	0	12	4	25
CIR1	0	genome.wustl.edu	37	2	175213713	175213713	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	175213713	175213713	T	-	DEL	CIR1	ENST00000342016	human	ensembl	74_37	-1	known	frame_shift_del	c.865	p.I289fs	0.130	NULL	pfam_CIR_N_dom,superfamily_Znf_CCHC	-	no_errors	CIR1	HGNC	ENSG00000138433				79	0	0	50	12	19.3548
HOXD8	0	genome.wustl.edu	37	2	176995424	176995424	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	176995424	176995424	T	-	DEL	HOXD8	ENST00000313173	human	ensembl	74_37	+1	known	frame_shift_del	c.330	p.P111fs	0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD8	HGNC	ENSG00000175879				198	0	0	52	8	13.3333
TTN	0	genome.wustl.edu	37	2	179648873	179648873	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	179648873	179648873	T	-	DEL	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_del	c.2699	p.K900fs	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				172	0	0	84	21	20
CCDC150	0	genome.wustl.edu	37	2	197511222	197511222	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	197511222	197511222	A	-	DEL	CCDC150	ENST00000389175	human	ensembl	74_37	+1	known	frame_shift_del	c.170	p.R59fs	0.031	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395				104	0	0	42	15	26.3158
CCDC150	0	genome.wustl.edu	37	2	197584401	197584401	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	197584401	197584401	T	-	DEL	CCDC150	ENST00000461825	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	CCDC150	HGNC	ENSG00000144395				45	0	0	8	4	33.3333
ZDBF2	0	genome.wustl.edu	37	2	207174428	207174428	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	207174428	207174428	A	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.5176	p.K1728fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				70	0	0	37	11	22.9167
CRYGA	0	genome.wustl.edu	37	2	209025577	209025577	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	209025577	209025577	C	-	DEL	CRYGA	ENST00000304502	human	ensembl	74_37	-1	known	frame_shift_del	c.476	p.G159fs	0.651	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGA	HGNC	ENSG00000168582				271	1	0.367647	108	27	20
CNPPD1	0	genome.wustl.edu	37	2	220037570	220037570	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	220037570	220037570	G	-	DEL	CNPPD1	ENST00000360507	human	ensembl	74_37	-1	known	frame_shift_del	c.971	p.P324fs	0.872	NULL	pfam_Cyclin_PHO80-like,superfamily_Cyclin-like	-	no_errors	CNPPD1	HGNC	ENSG00000115649				132	1	0.75188	40	8	16.6667
ABCB6	0	genome.wustl.edu	37	2	220081103	220081103	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	220081103	220081103	C	-	DEL	ABCB6	ENST00000265316	human	ensembl	74_37	-1	known	frame_shift_del	c.953	p.G318fs	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB6	HGNC	ENSG00000115657				152	0	0	35	10	22.2222
NEU2	0	genome.wustl.edu	37	2	233899664	233899664	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	233899664	233899664	C	-	DEL	NEU2	ENST00000233840	human	ensembl	74_37	+1	known	frame_shift_del	c.1040	p.L349fs	0.807	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU2	HGNC	ENSG00000115488				431	0	0	161	52	24.4131
EMILIN1	0	genome.wustl.edu	37	2	27305786	27305786	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	27305786	27305786	G	-	DEL	EMILIN1	ENST00000380320	human	ensembl	74_37	+1	known	frame_shift_del	c.1347	p.L452fs	0.997	NULL	pfam_EMI_domain,pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN1	HGNC	ENSG00000138080				58	0	0	13	3	18.75
SLC30A3	0	genome.wustl.edu	37	2	27478187	27478188	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	27478187	27478188	-	G	INS	SLC30A3	ENST00000233535	human	ensembl	74_37	-1	known	frame_shift_ins	c.1160_1159	p.Q387fs	0.986:0.942	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A3	HGNC	ENSG00000115194				185	0	0	44	12	21.4286
COX7A2L	0	genome.wustl.edu	37	2	42578275	42578275	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	42578275	42578275	A	-	DEL	COX7A2L	ENST00000482463	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COX7A2L	HGNC	ENSG00000115944				23	0	0	8	6	42.8571
MSH2	0	genome.wustl.edu	37	2	47639588	47639588	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	47639588	47639588	A	-	DEL	MSH2	ENST00000233146	human	ensembl	74_37	+1	known	frame_shift_del	c.681	p.A230fs	0.994	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom,pirsf_DNA_mismatch_repair_MSH2	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	-	no_errors	MSH2	HGNC	ENSG00000095002				119	0	0	38	11	22.449
ETAA1	0	genome.wustl.edu	37	2	67629972	67629972	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	67629972	67629972	T	-	DEL	ETAA1	ENST00000462772	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ETAA1	HGNC	ENSG00000143971				126	0	0	54	29	34.9398
TPRKB	0	genome.wustl.edu	37	2	73957881	73957881	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	73957881	73957881	A	-	DEL	TPRKB	ENST00000485758	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	TPRKB	HGNC	ENSG00000144034				63	0	0	23	16	41.0256
CCDC142	0	genome.wustl.edu	37	2	74701702	74701702	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	74701702	74701702	A	-	DEL	CCDC142	ENST00000393965	human	ensembl	74_37	-1	known	frame_shift_del	c.2224	p.S742fs	0.984	NULL	NULL	-	no_errors	CCDC142	HGNC	ENSG00000135637				84	0	0	29	9	23.6842
RNF103	0	genome.wustl.edu	37	2	86831015	86831015	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	86831015	86831015	T	-	DEL	RNF103	ENST00000237455	human	ensembl	74_37	-1	known	frame_shift_del	c.2009	p.K670fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305				194	1	0.512821	118	17	12.5926
FAHD2B	0	genome.wustl.edu	37	2	97749725	97749725	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	97749725	97749725	G	-	DEL	FAHD2B	ENST00000272610	human	ensembl	74_37	-1	known	frame_shift_del	c.842	p.P281fs	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2B	HGNC	ENSG00000144199				56	0	0	31	8	20.5128
ANKRD36	0	genome.wustl.edu	37	2	97875579	97875580	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	2	97875579	97875580	-	A	INS	ANKRD36	ENST00000420699	human	ensembl	74_37	+1	known	frame_shift_ins	c.3337_3338	p.D1116fs	0.003:0.006	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976				45	0	0	33	6	15.3846
IDH3B	0	genome.wustl.edu	37	20	2640522	2640523	+	RNA	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	2640522	2640523	-	G	INS	IDH3B	ENST00000466999	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.001	-	-	-	no_errors	IDH3B	HGNC	ENSG00000101365				78	0	0	56	13	18.8406
ENSG00000218018	0	genome.wustl.edu	37	20	55967910	55967910	+	RNA	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	55967910	55967910	C	-	DEL	ENSG00000218018	ENST00000417346	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP4-800J21.3	Clone_based_vega_gene	ENSG00000218018				76	0	0	14	5	26.3158
EDN3	0	genome.wustl.edu	37	20	57897443	57897444	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	57897443	57897444	-	A	INS	EDN3	ENST00000337938	human	ensembl	74_37	+1	known	frame_shift_ins	c.559_560	p.T189fs	0.000:0.000	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN3	HGNC	ENSG00000124205				193	0	0	41	11	21.1538
SYCP2	0	genome.wustl.edu	37	20	58490593	58490593	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	58490593	58490593	T	-	DEL	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_del	c.526	p.M176fs	1.000	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				191	1	0.520833	114	34	22.973
RBBP8NL	0	genome.wustl.edu	37	20	60989485	60989485	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	60989485	60989485	G	-	DEL	RBBP8NL	ENST00000252998	human	ensembl	74_37	-1	known	frame_shift_del	c.922	p.L308fs	0.037	NULL	pfam_CtIP_N	-	no_errors	RBBP8NL	HGNC	ENSG00000130701				26	0	0	6	4	40
SCRT2	0	genome.wustl.edu	37	20	644343	644343	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	20	644343	644343	G	-	DEL	SCRT2	ENST00000246104	human	ensembl	74_37	-1	known	frame_shift_del	c.896	p.P299fs	0.983	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SCRT2	HGNC	ENSG00000215397				10	0	0	2	2	50
BMS1P20	0	genome.wustl.edu	37	22	22661173	22661174	+	RNA	INS	-	-	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	22661173	22661174	-	C	INS	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.833:0.876	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				75	0	0	39	8	17.0213
SGSM1	0	genome.wustl.edu	37	22	25270540	25270540	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	25270540	25270540	C	-	DEL	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	frame_shift_del	c.1450	p.M486fs	0.859	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037				27	0	0	7	2	22.2222
PIK3IP1	0	genome.wustl.edu	37	22	31685264	31685266	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	31685264	31685266	CCT	-	DEL	PIK3IP1	ENST00000402249	human	ensembl	74_37	-1	known	in_frame_del	c.624_622	p.R208in_frame_del	0.004:0.009:0.009	NULL	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	-	no_errors	PIK3IP1	HGNC	ENSG00000100100				58	0	0	23	4	14.8148
APOL3	0	genome.wustl.edu	37	22	36545175	36545176	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	36545175	36545176	-	T	INS	APOL3	ENST00000397289	human	ensembl	74_37	-1	known	frame_shift_ins	c.239_238	p.T80fs	0.000:0.001	NULL	NULL	-	no_errors	APOL3	HGNC	ENSG00000128284				65	0	0	25	5	16.6667
SCUBE1	0	genome.wustl.edu	37	22	43634962	43634963	+	Splice_Site	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	22	43634962	43634963	-	G	INS	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	splice_site_ins	c.728-3_728-2	e7-2	1.000:1.000	-	-	-	no_errors	SCUBE1	HGNC	ENSG00000159307				114	0	0	17	17	50
ALCAM	0	genome.wustl.edu	37	3	105250904	105250904	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	105250904	105250904	A	-	DEL	ALCAM	ENST00000306107	human	ensembl	74_37	+1	known	frame_shift_del	c.453	p.K153fs	0.891	pfam_CD80_C2-set,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ALCAM	HGNC	ENSG00000170017				246	0	0	136	49	26.4865
SLC9C1	0	genome.wustl.edu	37	3	112005609	112005610	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	112005609	112005610	-	A	INS	SLC9C1	ENST00000305815	human	ensembl	74_37	-1	known	frame_shift_ins	c.30_29	p.S11fs	0.000:0.000	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C1	HGNC	ENSG00000172139				64	0	0	33	12	26.6667
GMPS	0	genome.wustl.edu	37	3	155633847	155633849	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	155633847	155633849	GAG	-	DEL	GMPS	ENST00000496455	human	ensembl	74_37	+1	known	in_frame_del	c.1078_1080	p.E361in_frame_del	1.000:1.000:1.000	NULL	pfam_GATASE,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655				85	0	0	33	17	34
SI	0	genome.wustl.edu	37	3	164781250	164781250	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	164781250	164781250	A	-	DEL	SI	ENST00000264382	human	ensembl	74_37	-1	known	frame_shift_del	c.887	p.L296fs	1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				143	0	0	108	24	18.1818
SERPINI1	0	genome.wustl.edu	37	3	167507159	167507159	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	167507159	167507159	A	-	DEL	SERPINI1	ENST00000295777	human	ensembl	74_37	+1	known	frame_shift_del	c.243	p.N83fs	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINI1	HGNC	ENSG00000163536				139	0	0	67	24	26.3736
MECOM	0	genome.wustl.edu	37	3	168833257	168833257	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	168833257	168833257	T	-	DEL	MECOM	ENST00000494292	human	ensembl	74_37	-1	known	frame_shift_del	c.2403	p.G802fs	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276				87	0	0	53	11	17.1875
FETUB	0	genome.wustl.edu	37	3	186362543	186362544	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	186362543	186362544	-	A	INS	FETUB	ENST00000265029	human	ensembl	74_37	+1	known	frame_shift_ins	c.428_429	p.K147fs	0.961:0.854	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512				214	0	0	82	30	26.7857
GP5	0	genome.wustl.edu	37	3	194118899	194118899	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	194118899	194118899	C	-	DEL	GP5	ENST00000323007	human	ensembl	74_37	-1	known	frame_shift_del	c.113	p.G38fs	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732				75	0	0	39	21	35
MUC4	0	genome.wustl.edu	37	3	195488372	195488372	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	195488372	195488372	A	-	DEL	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	frame_shift_del	c.14597	p.F4866fs	0.169	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				323	1	0.308642	86	21	19.6262
ARPP21	0	genome.wustl.edu	37	3	35833708	35833708	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	35833708	35833708	A	-	DEL	ARPP21	ENST00000476052	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARPP21	HGNC	ENSG00000172995				50	0	0	28	13	31.7073
CCR8	0	genome.wustl.edu	37	3	39374508	39374508	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	39374508	39374508	A	-	DEL	CCR8	ENST00000326306	human	ensembl	74_37	+1	known	frame_shift_del	c.686	p.N230fs	0.865	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR4	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR8,prints_Chemokine_CXCR4,prints_Brdyknn_rcpt	-	no_errors	CCR8	HGNC	ENSG00000179934				115	0	0	72	25	25.7732
ULK4	0	genome.wustl.edu	37	3	41860985	41860985	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	41860985	41860985	T	-	DEL	ULK4	ENST00000301831	human	ensembl	74_37	-1	known	frame_shift_del	c.1778	p.K593fs	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ULK4	HGNC	ENSG00000168038				114	0	0	69	12	14.8148
EIF4E3	0	genome.wustl.edu	37	3	71739264	71739266	+	In_Frame_Del	DEL	GAC	GAC	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	71739264	71739266	GAC	-	DEL	EIF4E3	ENST00000425534	human	ensembl	74_37	-1	known	in_frame_del	c.525_523	p.V175in_frame_del	0.984:1.000:0.997	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	-	no_errors	EIF4E3	HGNC	ENSG00000163412				126	0	0	45	15	25
OGG1	0	genome.wustl.edu	37	3	9798837	9798837	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	9798837	9798837	G	-	DEL	OGG1	ENST00000302003	human	ensembl	74_37	+1	known	frame_shift_del	c.1058	p.G354fs	0.011	NULL	pfam_OGG_N,pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,tigrfam_Ogg	-	no_errors	OGG1	HGNC	ENSG00000114026				224	0	0	57	31	35.2273
IL17RC	0	genome.wustl.edu	37	3	9958948	9958948	+	RNA	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	3	9958948	9958948	G	-	DEL	IL17RC	ENST00000498214	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IL17RC	HGNC	ENSG00000163702				28	0	0	8	7	46.6667
CENPE	0	genome.wustl.edu	37	4	104102618	104102618	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	104102618	104102618	A	-	DEL	CENPE	ENST00000509120	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	CENPE	HGNC	ENSG00000138778				49	0	0	38	19	33.3333
INTS12	0	genome.wustl.edu	37	4	106621122	106621122	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	106621122	106621122	A	-	DEL	INTS12	ENST00000340139	human	ensembl	74_37	-1	known	frame_shift_del	c.41	p.L14fs	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785				357	1	0.27933	201	54	21.1765
LARP7	0	genome.wustl.edu	37	4	113578483	113578483	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	113578483	113578483	A	-	DEL	LARP7	ENST00000324052	human	ensembl	74_37	+1	known	frame_shift_del	c.1749	p.*583fs	1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720				36	0	0	19	10	34.4828
BOD1L1	0	genome.wustl.edu	37	4	13610188	13610189	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	13610188	13610189	-	T	INS	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	frame_shift_ins	c.1708_1707	p.V569fs	1.000:1.000	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				15	0	0	5	2	28.5714
CLGN	0	genome.wustl.edu	37	4	141327187	141327188	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	141327187	141327188	CT	-	DEL	CLGN	ENST00000325617	human	ensembl	74_37	-1	known	frame_shift_del	c.328_327	p.G110fs	1.000:1.000	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132				70	0	0	19	24	55.814
ADAM29	0	genome.wustl.edu	37	4	175898770	175898771	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	175898770	175898771	-	A	INS	ADAM29	ENST00000359240	human	ensembl	74_37	+1	known	frame_shift_ins	c.2094_2095	p.S700fs	0.000:0.005	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594				70	0	0	35	14	28.5714
IRF2	0	genome.wustl.edu	37	4	185340707	185340708	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	185340707	185340708	-	A	INS	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	frame_shift_ins	c.103_102	p.Q34fs	1.000:0.983	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				163	0	0	57	28	32.9412
GRK4	0	genome.wustl.edu	37	4	3015460	3015460	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	3015460	3015460	A	-	DEL	GRK4	ENST00000398052	human	ensembl	74_37	+1	known	frame_shift_del	c.646	p.K217fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK4	HGNC	ENSG00000125388				480	0	0	161	36	18.2741
GRK4	0	genome.wustl.edu	37	4	3040280	3040281	+	RNA	DEL	AA	AA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	3040280	3040281	AA	-	DEL	GRK4	ENST00000504308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.003	-	-	-	no_errors	GRK4	HGNC	ENSG00000125388				70	0	0	35	11	23.913
CNGA1	0	genome.wustl.edu	37	4	47939172	47939172	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	47939172	47939172	T	-	DEL	CNGA1	ENST00000402813	human	ensembl	74_37	-1	known	frame_shift_del	c.1546	p.T516fs	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515				294	0	0	175	39	18.2243
WDFY3-AS1	0	genome.wustl.edu	37	4	85731542	85731545	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	4	85731542	85731545	AAAA	-	DEL	WDFY3-AS1	ENST00000510449	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009:0.004:0.002:0.071	-	-	-	no_errors	WDFY3-AS1	HGNC	ENSG00000251260				8	0	0	8	3	27.2727
PPIP5K2	0	genome.wustl.edu	37	5	102537308	102537309	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	102537308	102537309	-	A	INS	PPIP5K2	ENST00000358359	human	ensembl	74_37	+1	known	frame_shift_ins	c.3705_3706	p.N1237fs	0.977:0.999	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725				56	0	0	18	12	40
SEMA6A	0	genome.wustl.edu	37	5	115782765	115782765	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	115782765	115782765	G	-	DEL	SEMA6A	ENST00000257414	human	ensembl	74_37	-1	known	frame_shift_del	c.2688	p.V898fs	0.957	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6A	HGNC	ENSG00000092421				364	0	0	104	37	26.2411
SEC24A	0	genome.wustl.edu	37	5	134059335	134059335	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	134059335	134059335	T	-	DEL	SEC24A	ENST00000398844	human	ensembl	74_37	+1	known	frame_shift_del	c.3142	p.F1049fs	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615				230	0	0	92	32	25.8065
FAM13B	0	genome.wustl.edu	37	5	137284728	137284728	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	137284728	137284728	T	-	DEL	FAM13B	ENST00000033079	human	ensembl	74_37	-1	known	frame_shift_del	c.2010	p.K670fs	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003				220	0	0	109	44	28.7582
FNDC9	0	genome.wustl.edu	37	5	156769910	156769910	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	156769910	156769910	C	-	DEL	FNDC9	ENST00000312349	human	ensembl	74_37	-1	known	frame_shift_del	c.635	p.G212fs	0.000	NULL	superfamily_Fibronectin_type3	-	no_errors	FNDC9	HGNC	ENSG00000172568				122	0	0	60	14	18.9189
FLT4	0	genome.wustl.edu	37	5	180058747	180058748	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	180058747	180058748	-	G	INS	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	frame_shift_ins	c.90_89	p.T31fs	0.361:0.998	pfscan_Ig-like_dom,prints_VEGFR3_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				149	0	0	30	8	21.0526
LOC101928649	0	genome.wustl.edu	37	5	180684515	180684516	+	RNA	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	180684515	180684516	-	T	INS	LOC101928649	ENST00000417281	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.030:0.042	-	-	-	no_errors	CTC-338M12.4	Clone_based_vega_gene	ENSG00000233937				63	0	0	37	8	17.7778
OSMR	0	genome.wustl.edu	37	5	38923329	38923329	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	38923329	38923329	A	-	DEL	OSMR	ENST00000274276	human	ensembl	74_37	+1	known	frame_shift_del	c.1843	p.T617fs	0.981	pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623				112	0	0	59	12	16.9014
IPO11	0	genome.wustl.edu	37	5	61770245	61770245	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	61770245	61770245	T	-	DEL	IPO11	ENST00000409296	human	ensembl	74_37	+1	known	frame_shift_del	c.831	p.L279fs	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO11	HGNC	ENSG00000086200				160	0	0	70	28	28.5714
SREK1IP1	0	genome.wustl.edu	37	5	64020298	64020298	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	64020298	64020298	T	-	DEL	SREK1IP1	ENST00000513458	human	ensembl	74_37	-1	known	frame_shift_del	c.381	p.K129fs	0.967	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	SREK1IP1	HGNC	ENSG00000153006				52	0	0	33	12	26.6667
FCHO2	0	genome.wustl.edu	37	5	72264329	72264329	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	72264329	72264329	A	-	DEL	FCHO2	ENST00000341845	human	ensembl	74_37	+1	known	frame_shift_del	c.38	p.N15fs	1.000	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	FCHO2	HGNC	ENSG00000157107				35	0	0	12	4	25
TMEM171	0	genome.wustl.edu	37	5	72424240	72424240	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	5	72424240	72424240	C	-	DEL	TMEM171	ENST00000454765	human	ensembl	74_37	+1	known	frame_shift_del	c.664	p.P223fs	0.968	NULL	NULL	-	no_errors	TMEM171	HGNC	ENSG00000157111				530	0	0	265	73	21.5976
KIAA1919	0	genome.wustl.edu	37	6	111587361	111587361	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	111587361	111587361	T	-	DEL	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	frame_shift_del	c.596	p.C202fs	0.469	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214				87	0	0	32	28	46.6667
SHPRH	0	genome.wustl.edu	37	6	146266724	146266724	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	146266724	146266724	T	-	DEL	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	frame_shift_del	c.1371	p.G458fs	1.000	pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				52	0	0	40	10	20
FGFR1OP	0	genome.wustl.edu	37	6	167438458	167438458	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	167438458	167438458	T	-	DEL	FGFR1OP	ENST00000496181	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.043	-	-	-	no_errors	FGFR1OP	HGNC	ENSG00000213066				32	0	0	26	6	18.75
TBP	0	genome.wustl.edu	37	6	170876072	170876072	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	170876072	170876072	A	-	DEL	TBP	ENST00000230354	human	ensembl	74_37	+1	known	frame_shift_del	c.652	p.M219fs	1.000	pfam_TBP,prints_TBP	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592				59	0	0	23	4	14.8148
SCAND3	0	genome.wustl.edu	37	6	28554433	28554434	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	28554433	28554434	-	C	INS	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	frame_shift_ins	c.62_61	p.E21fs	0.008:0.011	NULL	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				142	0	0	54	22	28.9474
PPP1R10	0	genome.wustl.edu	37	6	30572795	30572795	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	30572795	30572795	T	-	DEL	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	frame_shift_del	c.930	p.V311fs	0.999	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				101	0	0	38	5	11.6279
PRRT1	0	genome.wustl.edu	37	6	32118218	32118218	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	32118218	32118218	C	-	DEL	PRRT1	ENST00000211413	human	ensembl	74_37	-1	known	frame_shift_del	c.485	p.G162fs	1.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	PRRT1	HGNC	ENSG00000204314				53	0	0	20	7	25.9259
SLC26A8	0	genome.wustl.edu	37	6	35912064	35912065	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	35912064	35912065	-	T	INS	SLC26A8	ENST00000355574	human	ensembl	74_37	-1	known	frame_shift_ins	c.2526_2525	p.N842fs	0.000:0.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A8	HGNC	ENSG00000112053				169	0	0	71	21	22.8261
FOXP4	0	genome.wustl.edu	37	6	41555186	41555186	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	41555186	41555186	C	-	DEL	FOXP4	ENST00000307972	human	ensembl	74_37	+1	known	frame_shift_del	c.808	p.L272fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP4	HGNC	ENSG00000137166				265	0	0	62	21	25.3012
HMGN3-AS1	0	genome.wustl.edu	37	6	79944244	79944244	+	RNA	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	79944244	79944244	T	-	DEL	HMGN3-AS1	ENST00000604516	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HMGN3-AS1	HGNC	ENSG00000270362				246	0	0	114	34	22.973
TTK	0	genome.wustl.edu	37	6	80720630	80720630	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	80720630	80720630	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.569	p.K192fs	0.007	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				155	0	0	105	31	22.7941
HTR1E	0	genome.wustl.edu	37	6	87725847	87725847	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	6	87725847	87725847	C	-	DEL	HTR1E	ENST00000305344	human	ensembl	74_37	+1	known	frame_shift_del	c.795	p.F268fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1E	HGNC	ENSG00000168830				404	1	0.246914	191	62	24.5059
SLC12A9	0	genome.wustl.edu	37	7	100424578	100424578	+	RNA	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	100424578	100424578	C	-	DEL	SLC12A9	ENST00000461016	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	SLC12A9	HGNC	ENSG00000146828				13	0	0	1	4	80
COL26A1	0	genome.wustl.edu	37	7	101183269	101183269	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	101183269	101183269	C	-	DEL	COL26A1	ENST00000313669	human	ensembl	74_37	+1	known	frame_shift_del	c.543	p.D183fs	0.917	NULL	pfam_EMI_domain,pfam_Collagen,pfscan_EMI_domain	-	no_errors	COL26A1	HGNC	ENSG00000160963				119	0	0	23	7	23.3333
C7orf50	0	genome.wustl.edu	37	7	1037311	1037311	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	1037311	1037311	G	-	DEL	C7orf50	ENST00000357429	human	ensembl	74_37	-1	known	frame_shift_del	c.535	p.L179fs	0.001	NULL	pfam_DUF2373	-	no_errors	C7orf50	HGNC	ENSG00000146540				85	0	0	25	14	35.8974
WNT2	0	genome.wustl.edu	37	7	116937798	116937798	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	116937798	116937798	C	-	DEL	WNT2	ENST00000265441	human	ensembl	74_37	-1	known	frame_shift_del	c.721	p.A241fs	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2	HGNC	ENSG00000105989				162	0	0	75	34	31.1927
RBM28	0	genome.wustl.edu	37	7	127973348	127973349	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	127973348	127973349	-	A	INS	RBM28	ENST00000223073	human	ensembl	74_37	-1	known	frame_shift_ins	c.1015_1014	p.I338fs	1.000:0.997	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM28	HGNC	ENSG00000106344				100	0	0	38	16	29.6296
BRAF	0	genome.wustl.edu	37	7	140482926	140482927	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	140482926	140482927	-	G	INS	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	frame_shift_ins	c.1209_1208	p.A404fs	1.000:1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				77	0	0	45	11	19.6429
NOBOX	0	genome.wustl.edu	37	7	144098496	144098496	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	144098496	144098496	G	-	DEL	NOBOX	ENST00000467773	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.R163fs	0.001	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	NOBOX	HGNC	ENSG00000106410				69	0	0	26	9	25.7143
ZNF746	0	genome.wustl.edu	37	7	149191320	149191320	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	149191320	149191320	G	-	DEL	ZNF746	ENST00000458143	human	ensembl	74_37	-1	known	frame_shift_del	c.299	p.P100fs	1.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_DUF3669_Znf,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF746	HGNC	ENSG00000181220				425	0	0	129	35	21.3415
SSPO	0	genome.wustl.edu	37	7	149485459	149485459	+	RNA	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	149485459	149485459	C	-	DEL	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				102	0	0	35	5	12.5
PMS2CL	0	genome.wustl.edu	37	7	6791127	6791127	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	6791127	6791127	A	-	DEL	PMS2CL	ENST00000486256	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	PMS2CL	HGNC	ENSG00000187953				37	0	0	30	11	26.8293
STEAP4	0	genome.wustl.edu	37	7	87912360	87912360	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	87912360	87912360	G	-	DEL	STEAP4	ENST00000380079	human	ensembl	74_37	-1	known	frame_shift_del	c.580	p.L194fs	0.252	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP4	HGNC	ENSG00000127954				124	0	0	49	18	26.8657
CYP51A1	0	genome.wustl.edu	37	7	91752448	91752450	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	7	91752448	91752450	AAG	-	DEL	CYP51A1	ENST00000003100	human	ensembl	74_37	-1	known	in_frame_del	c.1072_1070	p.P357in_frame_del	0.508:0.059:1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP51A1	HGNC	ENSG00000001630				194	0	0	65	27	29.3478
RGS22	0	genome.wustl.edu	37	8	100990178	100990178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	100990178	100990178	T	-	DEL	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	frame_shift_del	c.3486	p.K1162fs	0.010	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				86	0	0	61	18	22.7848
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				203	0	0	129	26	16.7742
MTMR9	0	genome.wustl.edu	37	8	11162509	11162509	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	11162509	11162509	A	-	DEL	MTMR9	ENST00000221086	human	ensembl	74_37	+1	known	frame_shift_del	c.577	p.N195fs	0.997	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR9	HGNC	ENSG00000104643				103	1	0.961538	60	19	24.0506
ATAD2	0	genome.wustl.edu	37	8	124384892	124384893	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	124384892	124384893	-	T	INS	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	frame_shift_ins	c.355_354	p.E118fs	1.000:0.995	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				296	0	0	147	23	13.5294
PHF20L1	0	genome.wustl.edu	37	8	133836263	133836264	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	133836263	133836264	-	A	INS	PHF20L1	ENST00000395386	human	ensembl	74_37	+1	putative	frame_shift_ins	c.1594_1595	p.V535fs	1.000:1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292				127	0	0	107	25	18.9394
PTK2	0	genome.wustl.edu	37	8	141754889	141754891	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	141754889	141754891	AAA	-	DEL	PTK2	ENST00000518509	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.004:0.005	-	-	-	no_errors	PTK2	HGNC	ENSG00000169398				31	0	0	37	8	17.7778
ZNF16	0	genome.wustl.edu	37	8	146157244	146157244	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	146157244	146157244	T	-	DEL	ZNF16	ENST00000276816	human	ensembl	74_37	-1	known	frame_shift_del	c.929	p.K310fs	0.009	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631				124	0	0	91	15	14.1509
FZD3	0	genome.wustl.edu	37	8	28385158	28385159	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	28385158	28385159	-	T	INS	FZD3	ENST00000240093	human	ensembl	74_37	+1	known	frame_shift_ins	c.881_882	p.T297fs	1.000:1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD3	HGNC	ENSG00000104290				160	0	0	95	24	20.1681
GPR124	0	genome.wustl.edu	37	8	37691605	37691605	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	37691605	37691605	G	-	DEL	GPR124	ENST00000412232	human	ensembl	74_37	+1	known	frame_shift_del	c.1567	p.A525fs	0.996	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR124	HGNC	ENSG00000020181				105	0	0	37	22	37.2881
PRKDC	0	genome.wustl.edu	37	8	48743276	48743276	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	48743276	48743276	T	-	DEL	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_del	c.8284	p.M2762fs	1.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				181	0	0	57	29	33.7209
KCNB2	0	genome.wustl.edu	37	8	73480397	73480397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	8	73480397	73480397	A	-	DEL	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	frame_shift_del	c.428	p.E146fs	1.000	prints_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				228	0	0	119	30	20.1342
NANS	0	genome.wustl.edu	37	9	100823160	100823161	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	100823160	100823161	-	G	INS	NANS	ENST00000210444	human	ensembl	74_37	+1	known	frame_shift_ins	c.229_230	p.K79fs	1.000:1.000	pfam_Neu5Ac_N	pfam_Neu5Ac_N,pfam_SAF,superfamily_AFP_Neu5c_C,smart_SAF,pfscan_AFP_Neu5c_C,prints_Antifreeze_III	-	no_errors	NANS	HGNC	ENSG00000095380				497	0	0	169	44	20.6573
UGCG	0	genome.wustl.edu	37	9	114691694	114691694	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	114691694	114691694	A	-	DEL	UGCG	ENST00000474306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	UGCG	HGNC	ENSG00000148154				9	0	0	22	6	21.4286
MIR4668	0	genome.wustl.edu	37	9	114694384	114694385	+	RNA	DEL	AA	AA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	114694384	114694385	AA	-	DEL	MIR4668	ENST00000582284	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MIR4668	HGNC	ENSG00000266315				43	0	0	51	12	19.0476
GSN	0	genome.wustl.edu	37	9	124074857	124074857	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	124074857	124074857	A	-	DEL	GSN	ENST00000485767	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GSN	HGNC	ENSG00000148180				14	0	0	10	2	16.6667
DAB2IP	0	genome.wustl.edu	37	9	124522230	124522232	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	124522230	124522232	AAG	-	DEL	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	in_frame_del	c.682_684	p.K230in_frame_del	1.000:1.000:1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				84	0	0	31	10	24.3902
RPL12	0	genome.wustl.edu	37	9	130211589	130211589	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	130211589	130211589	G	-	DEL	RPL12	ENST00000361436	human	ensembl	74_37	-1	known	frame_shift_del	c.263	p.P88fs	1.000	pfam_Ribosomal_L11_C,superfamily_Ribosomal_L11_C,smart_Ribosomal_L11	pfam_Ribosomal_L11_N,pfam_Ribosomal_L11_C,superfamily_Ribosomal_L11_N,superfamily_Ribosomal_L11_C,smart_Ribosomal_L11	-	no_errors	RPL12	HGNC	ENSG00000197958				92	0	0	40	10	20
SH2D3C	0	genome.wustl.edu	37	9	130507272	130507273	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	130507272	130507273	-	G	INS	SH2D3C	ENST00000314830	human	ensembl	74_37	-1	known	frame_shift_ins	c.1371_1370	p.T459fs	0.814:0.758	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	SH2D3C	HGNC	ENSG00000095370				200	0	0	76	19	20
UCK1	0	genome.wustl.edu	37	9	134401378	134401378	+	RNA	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	134401378	134401378	G	-	DEL	UCK1	ENST00000484876	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	UCK1	HGNC	ENSG00000130717				305	0	0	103	33	24.2647
SETX	0	genome.wustl.edu	37	9	135158548	135158549	+	RNA	DEL	AA	AA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	135158548	135158549	AA	-	DEL	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.003	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				20	0	0	14	8	36.3636
SEC16A	0	genome.wustl.edu	37	9	139370379	139370379	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	139370379	139370379	A	-	DEL	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	frame_shift_del	c.1689	p.F563fs	1.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				45	0	0	16	5	23.8095
PSIP1	0	genome.wustl.edu	37	9	15472612	15472613	+	RNA	DEL	AA	AA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	15472612	15472613	AA	-	DEL	PSIP1	ENST00000495873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985				128	0	0	36	16	30.7692
MLLT3	0	genome.wustl.edu	37	9	20346378	20346380	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	20346378	20346380	AAA	-	DEL	MLLT3	ENST00000380323	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.966:0.950:0.903	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843				29	0	0	25	2	7.40741
DCTN3	0	genome.wustl.edu	37	9	34615897	34615899	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	34615897	34615899	AAA	-	DEL	DCTN3	ENST00000479399	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008:0.011:0.013	-	-	-	no_errors	DCTN3	HGNC	ENSG00000137100				15	0	0	7	5	41.6667
RLN1	0	genome.wustl.edu	37	9	5335330	5335330	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	5335330	5335330	T	-	DEL	RLN1	ENST00000223862	human	ensembl	74_37	-1	known	frame_shift_del	c.479	p.K160fs	0.862	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Relaxin,prints_Insulin_family	-	no_errors	RLN1	HGNC	ENSG00000107018				121	0	0	65	23	26.1364
GDA	0	genome.wustl.edu	37	9	74810422	74810422	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	74810422	74810422	T	-	DEL	GDA	ENST00000238018	human	ensembl	74_37	+1	known	frame_shift_del	c.130	p.L45fs	1.000	tigrfam_Guanine_deaminase	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	-	no_errors	GDA	HGNC	ENSG00000119125				50	0	0	29	9	23.6842
PCSK5	0	genome.wustl.edu	37	9	78969093	78969093	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	78969093	78969093	C	-	DEL	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	frame_shift_del	c.5131	p.S1713fs	0.000	superfamily_Growth_fac_rcpt_N_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				29	0	0	12	3	20
TLE1	0	genome.wustl.edu	37	9	84208132	84208132	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	84208132	84208132	G	-	DEL	TLE1	ENST00000376499	human	ensembl	74_37	-1	known	frame_shift_del	c.1389	p.D464fs	0.002	superfamily_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781				197	1	0.505051	81	18	18.1818
ZCCHC6	0	genome.wustl.edu	37	9	88923492	88923493	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	88923492	88923493	-	T	INS	ZCCHC6	ENST00000375963	human	ensembl	74_37	-1	known	frame_shift_ins	c.3690_3689	p.N1230fs	1.000:1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223				190	0	0	117	23	16.4286
IARS	0	genome.wustl.edu	37	9	95003101	95003101	+	RNA	DEL	A	A	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	95003101	95003101	A	-	DEL	IARS	ENST00000473915	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	IARS	HGNC	ENSG00000196305				23	0	0	21	17	44.7368
ANKRD19P	0	genome.wustl.edu	37	9	95599087	95599088	+	RNA	INS	-	-	CA			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	9	95599087	95599088	-	CA	INS	ANKRD19P	ENST00000464387	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.162:0.575	-	-	-	no_errors	ANKRD19P	HGNC	ENSG00000187984				129	0	0	48	9	15.7895
SASH3	0	genome.wustl.edu	37	X	128922006	128922006	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	128922006	128922006	C	-	DEL	SASH3	ENST00000356892	human	ensembl	74_37	+1	known	frame_shift_del	c.113	p.V40fs	1.000	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH3	HGNC	ENSG00000122122				116	0	0	22	22	50
PRRG3	0	genome.wustl.edu	37	X	150869296	150869297	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	150869296	150869297	-	G	INS	PRRG3	ENST00000370353	human	ensembl	74_37	+1	known	frame_shift_ins	c.487_488	p.R166fs	0.000:0.000	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG3	HGNC	ENSG00000130032				41	0	0	15	10	40
MED14	0	genome.wustl.edu	37	X	40588606	40588607	+	RNA	DEL	AA	AA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	40588606	40588607	AA	-	DEL	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MED14	HGNC	ENSG00000180182				38	0	0	13	8	38.0952
ARAF	0	genome.wustl.edu	37	X	47426121	47426126	+	In_Frame_Del	DEL	CCACTC	CCACTC	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	CCACTC	CCACTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	47426121	47426126	CCACTC	-	DEL	ARAF	ENST00000377045	human	ensembl	74_37	+1	known	in_frame_del	c.641_646	p.TP215in_frame_del	1.000:1.000:1.000:1.000:0.914:1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	ARAF	HGNC	ENSG00000078061				46	0	0	11	15	57.6923
KDM5C	0	genome.wustl.edu	37	X	53222309	53222309	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	53222309	53222309	G	-	DEL	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	frame_shift_del	c.4523	p.P1508fs	0.002	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				52	0	0	9	10	52.6316
IL2RG	0	genome.wustl.edu	37	X	70327613	70327614	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	70327613	70327614	-	G	INS	IL2RG	ENST00000374202	human	ensembl	74_37	-1	known	frame_shift_ins	c.1083_1082	p.C362fs	0.869:0.874	NULL	pfam_IL-6_rcpt_alpha-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RG	HGNC	ENSG00000147168				41	0	0	9	11	55
XIST	0	genome.wustl.edu	37	X	73071941	73071943	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	73071941	73071943	AAA	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.531:0.460:0.005	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				9	0	0	2	7	77.7778
MAGEE2	0	genome.wustl.edu	37	X	75004754	75004754	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	X	75004754	75004754	G	-	DEL	MAGEE2	ENST00000373359	human	ensembl	74_37	-1	known	frame_shift_del	c.133	p.Q45fs	0.008	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675				57	0	0	14	10	41.6667
USP9Y	0	genome.wustl.edu	37	Y	14968773	14968774	+	RNA	DEL	AA	AA	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	Y	14968773	14968774	AA	-	DEL	USP9Y	ENST00000471409	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995:0.996	-	-	-	no_errors	USP9Y	HGNC	ENSG00000114374				17	0	0	14	9	39.1304
