Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
VCAM1	0	genome.wustl.edu	37	1	101194858	101194858	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	101194858	101194858	T	G	SNP	VCAM1	ENST00000294728	human	ensembl	74_37	+1	known	missense	c.1124	p.F375C	0.144	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692				226	0	0	110	28	20.2899
UBE4B	0	genome.wustl.edu	37	1	10166513	10166513	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	10166513	10166513	C	T	SNP	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	silent	c.1068	p.L356	0.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				198	0	0	63	24	27.5862
COL11A1	0	genome.wustl.edu	37	1	103352527	103352527	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	103352527	103352527	G	A	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.4730	p.A1577V	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				197	1	0.505051	76	41	35.0427
CASZ1	0	genome.wustl.edu	37	1	10714551	10714551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	10714551	10714551	C	T	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	missense	c.1763	p.R588H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				188	0	0	52	30	36.5854
PRPF38B	0	genome.wustl.edu	37	1	109238368	109238368	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	109238368	109238368	G	A	SNP	PRPF38B	ENST00000370025	human	ensembl	74_37	+1	known	silent	c.321	p.A107	0.060	pfam_PRP38	pfam_PRP38	-	no_errors	PRPF38B	HGNC	ENSG00000134186				68	0	0	23	10	30.303
SCARNA2	0	genome.wustl.edu	37	1	109642959	109642959	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	109642959	109642959	C	T	SNP	SCARNA2	ENST00000458748	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	SCARNA2	HGNC	ENSG00000270066				109	0	0	33	16	32.6531
CELSR2	0	genome.wustl.edu	37	1	109805496	109805496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	109805496	109805496	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.4613	p.R1538Q	0.869	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				177	0	0	46	25	35.2113
STRIP1	0	genome.wustl.edu	37	1	110587676	110587676	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	110587676	110587676	C	T	SNP	STRIP1	ENST00000369795	human	ensembl	74_37	+1	known	silent	c.1392	p.H464	0.989	pfam_DUF3402	pfam_DUF3402,pfam_N1221	-	no_errors	STRIP1	HGNC	ENSG00000143093				73	0	0	23	16	41.0256
KCNA3	0	genome.wustl.edu	37	1	111216807	111216807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	111216807	111216807	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	missense	c.625	p.R209W	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				102	1	0.970874	56	5	8.19672
KCNA3	0	genome.wustl.edu	37	1	111217049	111217049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	111217049	111217049	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	missense	c.383	p.T128M	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1.3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				193	0	0	53	31	36.9048
DRAM2	0	genome.wustl.edu	37	1	111663273	111663273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	111663273	111663273	T	C	SNP	DRAM2	ENST00000286692	human	ensembl	74_37	-1	known	missense	c.382	p.T128A	1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM2	HGNC	ENSG00000156171				126	0	0	49	16	24.6154
MTOR	0	genome.wustl.edu	37	1	11273588	11273588	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	11273588	11273588	C	T	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	silent	c.3153	p.T1051	0.380	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				159	0	0	72	32	30.7692
MTOR	0	genome.wustl.edu	37	1	11288885	11288885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	11288885	11288885	C	T	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.2870	p.R957Q	1.000	pfam_DUF3385_TOR,superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				144	1	0.689655	52	29	35.8025
HIPK1	0	genome.wustl.edu	37	1	114483980	114483980	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	114483980	114483980	T	C	SNP	HIPK1	ENST00000369558	human	ensembl	74_37	+1	known	silent	c.975	p.D325	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK1	HGNC	ENSG00000163349				224	1	0.444444	74	49	39.8374
PTGFRN	0	genome.wustl.edu	37	1	117492145	117492145	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	117492145	117492145	A	C	SNP	PTGFRN	ENST00000393203	human	ensembl	74_37	+1	known	missense	c.1164	p.K388N	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PTGFRN	HGNC	ENSG00000134247				107	0	0	51	22	30.137
CLCN6	0	genome.wustl.edu	37	1	11888655	11888655	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	11888655	11888655	C	T	SNP	CLCN6	ENST00000346436	human	ensembl	74_37	+1	known	silent	c.1095	p.N365	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021				347	0	0	124	12	8.82353
CLCN6	0	genome.wustl.edu	37	1	11894370	11894370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	11894370	11894370	G	A	SNP	CLCN6	ENST00000346436	human	ensembl	74_37	+1	known	missense	c.1604	p.R535H	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021				70	0	0	25	15	37.5
CLCN6	0	genome.wustl.edu	37	1	11897527	11897527	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	11897527	11897527	C	T	SNP	CLCN6	ENST00000346436	human	ensembl	74_37	+1	known	nonsense	c.2266	p.R756*	1.000	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021				113	0	0	32	26	44.8276
DVL1	0	genome.wustl.edu	37	1	1275518	1275518	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	1275518	1275518	C	A	SNP	DVL1	ENST00000378888	human	ensembl	74_37	-1	known	missense	c.809	p.S270I	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam	-	no_errors	DVL1	HGNC	ENSG00000107404				92	0	0	35	15	30
MXRA8	0	genome.wustl.edu	37	1	1290695	1290695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	1290695	1290695	G	A	SNP	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	missense	c.407	p.T136I	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				61	0	0	11	3	21.4286
PRAMEF2	0	genome.wustl.edu	37	1	12920014	12920014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	12920014	12920014	G	A	SNP	PRAMEF2	ENST00000240189	human	ensembl	74_37	+1	known	missense	c.754	p.E252K	0.000	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952				194	0	0	105	39	27.0833
PDE4DIP	0	genome.wustl.edu	37	1	144903085	144903085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	144903085	144903085	G	A	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.2807	p.A936V	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				225	0	0	106	23	17.8295
PDE4DIP	0	genome.wustl.edu	37	1	145015939	145015939	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	145015939	145015939	G	A	SNP	PDE4DIP	ENST00000313382	human	ensembl	74_37	-1	known	missense	c.149	p.P50L	0.003	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				794	0	0	472	38	7.45098
POGZ	0	genome.wustl.edu	37	1	151377819	151377819	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	151377819	151377819	T	C	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.3692	p.H1231R	1.000	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				110	0	0	46	31	40.2597
CGN	0	genome.wustl.edu	37	1	151491487	151491487	+	Silent	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	151491487	151491487	T	G	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	silent	c.492	p.A164	0.000	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				209	0	0	107	6	5.30973
HRNR	0	genome.wustl.edu	37	1	152188393	152188393	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	152188393	152188393	T	C	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.5712	p.S1904	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				2124	1	0.0470588	1019	91	8.1982
FLG	0	genome.wustl.edu	37	1	152281389	152281389	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	152281389	152281389	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.5973	p.A1991	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				1001	0	0	567	37	6.12583
LCE2A	0	genome.wustl.edu	37	1	152671618	152671618	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	152671618	152671618	C	T	SNP	LCE2A	ENST00000368779	human	ensembl	74_37	+1	known	missense	c.241	p.R81W	0.000	NULL	NULL	-	no_errors	LCE2A	HGNC	ENSG00000187173				178	0	0	45	22	32.8358
LCE1F	0	genome.wustl.edu	37	1	152749084	152749084	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	152749084	152749084	C	T	SNP	LCE1F	ENST00000334371	human	ensembl	74_37	+1	known	silent	c.237	p.H79	1.000	NULL	NULL	-	no_errors	LCE1F	HGNC	ENSG00000240386				62	0	0	30	9	23.0769
LCE1A	0	genome.wustl.edu	37	1	152799957	152799957	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	152799957	152799957	C	T	SNP	LCE1A	ENST00000335123	human	ensembl	74_37	+1	known	silent	c.9	p.C3	1.000	NULL	NULL	-	no_errors	LCE1A	HGNC	ENSG00000186844				172	0	0	59	16	21.3333
UBAP2L	0	genome.wustl.edu	37	1	154201200	154201200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	154201200	154201200	C	T	SNP	UBAP2L	ENST00000361546	human	ensembl	74_37	+1	known	missense	c.278	p.T93M	1.000	superfamily_UBA-like	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC	ENSG00000143569				117	0	0	56	27	32.5301
ZBTB7B	0	genome.wustl.edu	37	1	154987461	154987461	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	154987461	154987461	G	A	SNP	ZBTB7B	ENST00000417934	human	ensembl	74_37	+1	known	missense	c.427	p.A143T	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7B	HGNC	ENSG00000160685				69	0	0	25	4	13.7931
DCST1	0	genome.wustl.edu	37	1	155007180	155007180	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	155007180	155007180	T	A	SNP	DCST1	ENST00000295542	human	ensembl	74_37	+1	known	missense	c.239	p.I80N	0.935	NULL	pfam_DC_STAMP-like,pfscan_Znf_RING	-	no_errors	DCST1	HGNC	ENSG00000163357				111	0	0	50	25	33.3333
CLK2	0	genome.wustl.edu	37	1	155233110	155233110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	155233110	155233110	G	A	SNP	CLK2	ENST00000368361	human	ensembl	74_37	-1	known	missense	c.1399	p.R467W	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK2	HGNC	ENSG00000176444				94	0	0	27	10	27.027
SSR2	0	genome.wustl.edu	37	1	155989860	155989860	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	155989860	155989860	G	A	SNP	SSR2	ENST00000295702	human	ensembl	74_37	-1	known	silent	c.99	p.Y33	0.966	pfam_TRAP_beta,pirsf_TRAP_beta	pfam_TRAP_beta,pirsf_TRAP_beta	-	no_errors	SSR2	HGNC	ENSG00000163479				120	0	0	44	20	31.25
C1orf85	0	genome.wustl.edu	37	1	156264771	156264771	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	156264771	156264771	G	A	SNP	C1orf85	ENST00000362007	human	ensembl	74_37	-1	known	silent	c.157	p.L53	0.000	NULL	NULL	-	no_errors	C1orf85	HGNC	ENSG00000198715				73	0	0	24	16	40
IQGAP3	0	genome.wustl.edu	37	1	156498742	156498742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	156498742	156498742	G	A	SNP	IQGAP3	ENST00000361170	human	ensembl	74_37	-1	known	missense	c.4537	p.R1513W	1.000	pfam_RasGAP_C	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856				123	0	0	43	25	36.7647
NES	0	genome.wustl.edu	37	1	156642653	156642653	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	156642653	156642653	C	A	SNP	NES	ENST00000368223	human	ensembl	74_37	-1	known	nonsense	c.1327	p.G443*	0.135	NULL	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				107	0	0	62	13	17.3333
MIR765	0	genome.wustl.edu	37	1	156905984	156905984	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	156905984	156905984	C	T	SNP	MIR765	ENST00000390226	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR765	HGNC	ENSG00000211581				125	0	0	38	20	34.4828
ETV3L	0	genome.wustl.edu	37	1	157062449	157062449	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	157062449	157062449	G	T	SNP	ETV3L	ENST00000454449	human	ensembl	74_37	-1	known	missense	c.1078	p.P360T	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV3L	HGNC	ENSG00000253831				83	0	0	31	10	24.3902
CD1D	0	genome.wustl.edu	37	1	158151369	158151369	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	158151369	158151369	G	A	SNP	CD1D	ENST00000368171	human	ensembl	74_37	+1	known	silent	c.186	p.S62	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1D	HGNC	ENSG00000158473				222	0	0	89	43	32.5758
OR10R2	0	genome.wustl.edu	37	1	158449951	158449951	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	158449951	158449951	T	C	SNP	OR10R2	ENST00000368152	human	ensembl	74_37	+1	known	missense	c.284	p.F95S	0.878	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10R2	HGNC	ENSG00000198965				353	0	0	135	62	31.4721
RSC1A1	0	genome.wustl.edu	37	1	15986518	15986518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	15986518	15986518	C	T	SNP	RSC1A1	ENST00000345034	human	ensembl	74_37	+1	known	missense	c.155	p.A52V	0.236	NULL	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	RSC1A1	HGNC	ENSG00000215695				353	0	0	144	74	33.945
SLAMF9	0	genome.wustl.edu	37	1	159922266	159922266	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	159922266	159922266	G	A	SNP	SLAMF9	ENST00000368093	human	ensembl	74_37	-1	known	silent	c.450	p.C150	0.012	pfscan_Ig-like_dom	pfam_Ig_V-set,pfscan_Ig-like_dom	-	no_errors	SLAMF9	HGNC	ENSG00000162723				226	0	0	72	38	34.5455
PVRL4	0	genome.wustl.edu	37	1	161049551	161049551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	161049551	161049551	C	T	SNP	PVRL4	ENST00000368012	human	ensembl	74_37	-1	known	missense	c.268	p.V90M	0.985	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PVRL4	HGNC	ENSG00000143217				110	0	0	31	29	48.3333
PFDN2	0	genome.wustl.edu	37	1	161072141	161072141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	161072141	161072141	G	A	SNP	PFDN2	ENST00000368010	human	ensembl	74_37	-1	known	missense	c.100	p.R34W	1.000	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PFDN2	HGNC	ENSG00000143256				75	0	0	56	19	25.3333
ADAMTS4	0	genome.wustl.edu	37	1	161167952	161167952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	161167952	161167952	G	A	SNP	ADAMTS4	ENST00000367996	human	ensembl	74_37	-1	known	missense	c.466	p.R156W	0.149	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS4	HGNC	ENSG00000158859				126	0	0	64	13	16.8831
HSPA6	0	genome.wustl.edu	37	1	161494851	161494851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	161494851	161494851	G	A	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	missense	c.403	p.A135T	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				41	0	0	15	7	31.8182
DDR2	0	genome.wustl.edu	37	1	162749984	162749984	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	162749984	162749984	G	A	SNP	DDR2	ENST00000367921	human	ensembl	74_37	+1	known	missense	c.2516	p.R839H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733				184	0	0	79	33	29.4643
CLCNKA	0	genome.wustl.edu	37	1	16354587	16354587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	16354587	16354587	G	A	SNP	CLCNKA	ENST00000331433	human	ensembl	74_37	+1	known	missense	c.941	p.R314Q	0.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510				130	0	0	47	17	26.5625
CLCNKB	0	genome.wustl.edu	37	1	16380184	16380184	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	16380184	16380184	T	C	SNP	CLCNKB	ENST00000375679	human	ensembl	74_37	+1	known	missense	c.1673	p.L558P	1.000	pfam_CBS_dom,smart_CBS_dom	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908				121	0	0	23	13	36.1111
MST1L	0	genome.wustl.edu	37	1	17085058	17085058	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	17085058	17085058	C	T	SNP	MST1L	ENST00000455405	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MST1L	HGNC	ENSG00000186715				123	0	0	62	4	6.06061
MST1L	0	genome.wustl.edu	37	1	17085304	17085304	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	17085304	17085304	G	A	SNP	MST1L	ENST00000455405	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MST1L	HGNC	ENSG00000186715				26	0	0	15	3	16.6667
ATP13A2	0	genome.wustl.edu	37	1	17331924	17331924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	17331924	17331924	C	T	SNP	ATP13A2	ENST00000326735	human	ensembl	74_37	-1	known	missense	c.233	p.R78Q	0.118	pfam_ATPase_P-typ_Cation_typ_V,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A2	HGNC	ENSG00000159363				23	0	0	6	7	53.8462
SDHB	0	genome.wustl.edu	37	1	17380511	17380511	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	17380511	17380511	C	G	SNP	SDHB	ENST00000375499	human	ensembl	74_37	-1	known	missense	c.4	p.A2P	1.000	NULL	superfamily_Helical_ferredxn,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Succ_DH/fum_Rdtase_Fe-S	-	no_errors	SDHB	HGNC	ENSG00000117118				26	0	0	15	4	21.0526
PADI2	0	genome.wustl.edu	37	1	17410241	17410241	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	17410241	17410241	G	A	SNP	PADI2	ENST00000375486	human	ensembl	74_37	-1	known	nonsense	c.1030	p.R344*	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115				149	0	0	49	28	36.3636
TNN	0	genome.wustl.edu	37	1	175048696	175048696	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	175048696	175048696	G	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	missense	c.637	p.V213M	1.000	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				14	0	0	7	4	36.3636
PADI3	0	genome.wustl.edu	37	1	17603150	17603150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	17603150	17603150	G	A	SNP	PADI3	ENST00000375460	human	ensembl	74_37	+1	known	missense	c.1444	p.D482N	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619				109	0	0	50	16	24.2424
RGS16	0	genome.wustl.edu	37	1	182571596	182571596	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	182571596	182571596	A	G	SNP	RGS16	ENST00000367558	human	ensembl	74_37	-1	known	missense	c.179	p.L60P	0.987	superfamily_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS16	HGNC	ENSG00000143333				86	0	0	34	5	12.8205
RGL1	0	genome.wustl.edu	37	1	183895311	183895311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	183895311	183895311	G	A	SNP	RGL1	ENST00000304685	human	ensembl	74_37	+1	known	missense	c.2297	p.R766H	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344				169	0	0	73	22	23.1579
HMCN1	0	genome.wustl.edu	37	1	186106744	186106744	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	186106744	186106744	A	G	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.13697	p.K4566R	0.137	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				80	0	0	32	14	30.4348
KLHDC7A	0	genome.wustl.edu	37	1	18809629	18809629	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	18809629	18809629	C	T	SNP	KLHDC7A	ENST00000400664	human	ensembl	74_37	+1	known	silent	c.2154	p.C718	0.998	NULL	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7A	HGNC	ENSG00000179023				108	0	0	37	30	44.7761
EMC1	0	genome.wustl.edu	37	1	19546113	19546113	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	19546113	19546113	G	A	SNP	EMC1	ENST00000477853	human	ensembl	74_37	-1	known	nonsense	c.2752	p.R918*	0.999	pfam_DUF1620	pfam_DUF1620,superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	EMC1	HGNC	ENSG00000127463				119	0	0	52	21	28.7671
CFHR3	0	genome.wustl.edu	37	1	196759285	196759285	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	196759285	196759285	T	C	SNP	CFHR3	ENST00000367425	human	ensembl	74_37	+1	known	missense	c.724	p.Y242H	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR3	HGNC	ENSG00000116785				139	0	0	35	60	63.1579
LGR6	0	genome.wustl.edu	37	1	202276051	202276051	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	202276051	202276051	A	G	SNP	LGR6	ENST00000367278	human	ensembl	74_37	+1	known	missense	c.1192	p.S398G	0.998	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067				77	0	0	30	13	30.2326
PPFIA4	0	genome.wustl.edu	37	1	203044748	203044748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	203044748	203044748	G	A	SNP	PPFIA4	ENST00000414050	human	ensembl	74_37	+1	known	missense	c.2558	p.R853H	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA4	HGNC	ENSG00000143847				42	0	0	17	7	29.1667
CHIT1	0	genome.wustl.edu	37	1	203192711	203192711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	203192711	203192711	C	T	SNP	CHIT1	ENST00000367229	human	ensembl	74_37	-1	known	missense	c.392	p.S131N	0.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIT1	HGNC	ENSG00000133063				208	0	0	67	25	27.1739
PLA2G5	0	genome.wustl.edu	37	1	20412716	20412716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	20412716	20412716	G	A	SNP	PLA2G5	ENST00000375108	human	ensembl	74_37	+1	known	missense	c.181	p.D61N	0.637	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	PLA2G5	HGNC	ENSG00000127472				112	0	0	42	27	39.1304
SLC26A9	0	genome.wustl.edu	37	1	205899107	205899107	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	205899107	205899107	G	A	SNP	SLC26A9	ENST00000340781	human	ensembl	74_37	-1	known	silent	c.630	p.A210	0.004	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502				88	0	0	25	14	35.8974
CTSE	0	genome.wustl.edu	37	1	206331126	206331126	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	206331126	206331126	T	C	SNP	CTSE	ENST00000361052	human	ensembl	74_37	+1	known	missense	c.1147	p.F383L	0.998	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	CTSE	HGNC	ENSG00000196188				218	0	0	71	41	36.6071
DIEXF	0	genome.wustl.edu	37	1	210016834	210016834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	210016834	210016834	G	A	SNP	DIEXF	ENST00000491415	human	ensembl	74_37	+1	known	missense	c.1820	p.R607H	0.960	pfam_Digest_organ_expansion_fac-prd	pfam_Digest_organ_expansion_fac-prd,superfamily_P-loop_NTPase	-	no_errors	DIEXF	HGNC	ENSG00000117597				49	0	0	25	14	35.8974
SH2D5	0	genome.wustl.edu	37	1	21053506	21053506	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	21053506	21053506	G	A	SNP	SH2D5	ENST00000444387	human	ensembl	74_37	-1	known	silent	c.231	p.S77	0.999	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH2	-	no_errors	SH2D5	HGNC	ENSG00000189410				44	0	0	9	6	40
CENPF	0	genome.wustl.edu	37	1	214820743	214820743	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	214820743	214820743	A	C	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.7830	p.K2610N	1.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				36	0	0	21	7	25
USH2A	0	genome.wustl.edu	37	1	216496917	216496917	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	216496917	216496917	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.1449	p.T483	0.142	smart_Laminin_N,pfscan_Laminin_N	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				212	1	0.469484	99	28	22.0472
USH2A	0	genome.wustl.edu	37	1	216498890	216498890	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	216498890	216498890	T	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.900	p.S300	0.866	smart_Laminin_N,pfscan_Laminin_N	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				94	0	0	35	22	38.5965
DUSP10	0	genome.wustl.edu	37	1	221879616	221879616	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	221879616	221879616	T	C	SNP	DUSP10	ENST00000366899	human	ensembl	74_37	-1	known	missense	c.1004	p.Q335R	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507				269	0	0	82	49	37.4046
LIN9	0	genome.wustl.edu	37	1	226483628	226483628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	226483628	226483628	C	T	SNP	LIN9	ENST00000328205	human	ensembl	74_37	-1	known	missense	c.227	p.R76Q	1.000	NULL	pfam_LIN-9/ALY1	-	no_errors	LIN9	HGNC	ENSG00000183814				97	0	0	30	18	37.5
C1orf35	0	genome.wustl.edu	37	1	228290071	228290071	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	228290071	228290071	G	A	SNP	C1orf35	ENST00000272139	human	ensembl	74_37	-1	known	silent	c.387	p.G129	0.997	NULL	pfam_Kinase_phosphorylation_domain	-	no_errors	C1orf35	HGNC	ENSG00000143793				39	0	0	9	5	35.7143
MRPL55	0	genome.wustl.edu	37	1	228294543	228294543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	228294543	228294543	G	A	SNP	MRPL55	ENST00000366731	human	ensembl	74_37	-1	known	missense	c.413	p.S138L	0.000	pfam_Ribosomal_L55_mit	pfam_Ribosomal_L55_mit	-	no_errors	MRPL55	HGNC	ENSG00000162910				134	0	0	36	29	44.6154
GJC2	0	genome.wustl.edu	37	1	228345732	228345732	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	228345732	228345732	G	A	SNP	GJC2	ENST00000366714	human	ensembl	74_37	+1	known	silent	c.273	p.S91	0.010	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJC2	HGNC	ENSG00000198835				27	0	0	5	8	61.5385
GJC2	0	genome.wustl.edu	37	1	228346017	228346017	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	228346017	228346017	C	T	SNP	GJC2	ENST00000366714	human	ensembl	74_37	+1	known	silent	c.558	p.G186	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJC2	HGNC	ENSG00000198835				8	0	0	8	5	38.4615
OBSCN	0	genome.wustl.edu	37	1	228509183	228509183	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	228509183	228509183	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.14641	p.A4881T	1.000	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				25	0	0	12	7	36.8421
NUP133	0	genome.wustl.edu	37	1	229635470	229635470	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	229635470	229635470	C	T	SNP	NUP133	ENST00000261396	human	ensembl	74_37	-1	known	silent	c.609	p.S203	0.916	pfam_Nucleoporin_Nup133/Nup155_N	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248				120	0	0	46	20	30.303
NUP133	0	genome.wustl.edu	37	1	229635528	229635528	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	229635528	229635528	A	G	SNP	NUP133	ENST00000261396	human	ensembl	74_37	-1	known	missense	c.551	p.I184T	0.969	pfam_Nucleoporin_Nup133/Nup155_N	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248				96	0	0	37	16	30.1887
DISC1	0	genome.wustl.edu	37	1	231954073	231954073	+	Splice_Site	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	231954073	231954073	A	G	SNP	DISC1	ENST00000439617	human	ensembl	74_37	+1	known	splice_site	c.1793-2	e9-2	0.981	-	-	-	no_errors	DISC1	HGNC	ENSG00000162946				130	0	0	62	20	24.3902
LUZP1	0	genome.wustl.edu	37	1	23418572	23418572	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	23418572	23418572	A	G	SNP	LUZP1	ENST00000302291	human	ensembl	74_37	-1	known	missense	c.2183	p.M728T	0.002	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641				419	0	0	162	73	31.0638
NID1	0	genome.wustl.edu	37	1	236189268	236189268	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	236189268	236189268	C	T	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.1912	p.V638M	0.990	superfamily_GFP,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				314	1	0.31746	108	55	33.7423
HNRNPR	0	genome.wustl.edu	37	1	23637497	23637497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	23637497	23637497	C	T	SNP	HNRNPR	ENST00000374616	human	ensembl	74_37	-1	known	missense	c.1361	p.R454H	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944				150	0	0	71	26	26.8041
MTR	0	genome.wustl.edu	37	1	237001790	237001790	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	237001790	237001790	T	C	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	missense	c.1406	p.V469A	1.000	pfam_Pterin-binding,superfamily_Dihydropteroate_synth-like,pirsf_MetH,pfscan_Pterin-binding,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				245	0	0	96	34	26.1538
RYR2	0	genome.wustl.edu	37	1	237919622	237919622	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	237919622	237919622	A	G	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.11198	p.Q3733R	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				106	0	0	30	9	23.0769
FMN2	0	genome.wustl.edu	37	1	240255580	240255580	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	240255580	240255580	C	T	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	silent	c.171	p.G57	0.968	NULL	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				19	0	0	5	4	44.4444
SDCCAG8	0	genome.wustl.edu	37	1	243480061	243480061	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	243480061	243480061	A	G	SNP	SDCCAG8	ENST00000366541	human	ensembl	74_37	+1	known	missense	c.934	p.R312G	0.998	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282				128	0	0	37	14	27.451
KIF26B	0	genome.wustl.edu	37	1	245850088	245850088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	245850088	245850088	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	missense	c.3803	p.A1268V	0.221	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				58	0	0	15	13	46.4286
OR2G2	0	genome.wustl.edu	37	1	247752385	247752385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	247752385	247752385	G	A	SNP	OR2G2	ENST00000320065	human	ensembl	74_37	+1	known	missense	c.724	p.G242R	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489				136	0	0	58	34	36.9565
SRRM1	0	genome.wustl.edu	37	1	24995906	24995906	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	24995906	24995906	C	T	SNP	SRRM1	ENST00000447431	human	ensembl	74_37	+1	known	missense	c.2068	p.P690S	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	SRRM1	HGNC	ENSG00000133226				78	0	0	25	8	24.2424
TMEM57	0	genome.wustl.edu	37	1	25785241	25785241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	25785241	25785241	G	A	SNP	TMEM57	ENST00000374343	human	ensembl	74_37	+1	known	missense	c.1012	p.A338T	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178				322	0	0	140	43	23.4973
ARID1A	0	genome.wustl.edu	37	1	27106699	27106699	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	27106699	27106699	T	C	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.6310	p.S2104P	1.000	pfam_DUF3518	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				178	0	0	67	31	31.6327
SYTL1	0	genome.wustl.edu	37	1	27680330	27680330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	27680330	27680330	C	T	SNP	SYTL1	ENST00000543823	human	ensembl	74_37	+1	known	missense	c.1676	p.A559V	0.807	NULL	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	-	no_errors	SYTL1	HGNC	ENSG00000142765				82	0	0	34	2	5.55556
WASF2	0	genome.wustl.edu	37	1	27741399	27741399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	27741399	27741399	C	T	SNP	WASF2	ENST00000430629	human	ensembl	74_37	-1	known	missense	c.596	p.R199H	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF2	HGNC	ENSG00000158195				202	0	0	89	31	25.8333
PTAFR	0	genome.wustl.edu	37	1	28476590	28476590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	28476590	28476590	G	A	SNP	PTAFR	ENST00000305392	human	ensembl	74_37	-1	known	missense	c.943	p.R315W	1.000	prints_PAF_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_PAF_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTAFR	HGNC	ENSG00000169403				188	0	0	55	36	39.5604
MATN1	0	genome.wustl.edu	37	1	31194315	31194315	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	31194315	31194315	G	A	SNP	MATN1	ENST00000373765	human	ensembl	74_37	-1	known	silent	c.378	p.F126	0.972	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510				232	0	0	86	44	33.8462
TMEM39B	0	genome.wustl.edu	37	1	32566220	32566220	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	32566220	32566220	A	G	SNP	TMEM39B	ENST00000427288	human	ensembl	74_37	+1	known	silent	c.948	p.A316	0.000	NULL	pfam_Uncharacterised_TMEM39	-	no_errors	TMEM39B	HGNC	ENSG00000121775				42	0	0	28	15	34.8837
LCK	0	genome.wustl.edu	37	1	32745586	32745586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	32745586	32745586	G	A	SNP	LCK	ENST00000333070	human	ensembl	74_37	+1	known	missense	c.1276	p.A426T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LCK	HGNC	ENSG00000182866				78	0	0	35	13	27.0833
A3GALT2	0	genome.wustl.edu	37	1	33772942	33772942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	33772942	33772942	C	T	SNP	A3GALT2	ENST00000442999	human	ensembl	74_37	-1	novel	missense	c.448	p.V150M	0.068	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	A3GALT2	HGNC	ENSG00000184389				108	0	0	12	9	42.8571
SFPQ	0	genome.wustl.edu	37	1	35653617	35653617	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	35653617	35653617	C	T	SNP	SFPQ	ENST00000357214	human	ensembl	74_37	-1	known	missense	c.1772	p.R591H	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SFPQ	HGNC	ENSG00000116560				283	0	0	121	57	32.0225
CLSPN	0	genome.wustl.edu	37	1	36229901	36229901	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	36229901	36229901	A	T	SNP	CLSPN	ENST00000318121	human	ensembl	74_37	-1	known	missense	c.548	p.I183N	0.999	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853				40	0	0	13	6	31.5789
GRIK3	0	genome.wustl.edu	37	1	37337827	37337827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	37337827	37337827	C	T	SNP	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	missense	c.694	p.D232N	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873				74	0	0	27	11	28.9474
C1orf174	0	genome.wustl.edu	37	1	3809468	3809468	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	3809468	3809468	C	T	SNP	C1orf174	ENST00000361605	human	ensembl	74_37	-1	known	silent	c.108	p.T36	0.001	NULL	NULL	-	no_errors	C1orf174	HGNC	ENSG00000198912				58	0	0	12	9	42.8571
MTF1	0	genome.wustl.edu	37	1	38281160	38281160	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	38281160	38281160	G	A	SNP	MTF1	ENST00000373036	human	ensembl	74_37	-1	known	missense	c.1910	p.A637V	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786				96	0	0	22	13	37.1429
MACF1	0	genome.wustl.edu	37	1	39934365	39934365	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	39934365	39934365	G	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.15655	p.A5219S	1.000	pfam_GAS2_dom,superfamily_GAS2_dom,smart_GAS2_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				93	0	0	29	17	36.9565
LOC728716	0	genome.wustl.edu	37	1	4014775	4014775	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	4014775	4014775	G	A	SNP	LOC728716	ENST00000412674	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP13-614K11.1	Clone_based_vega_gene	ENSG00000233304				16	0	0	5	4	44.4444
SLFNL1	0	genome.wustl.edu	37	1	41486058	41486058	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	41486058	41486058	G	T	SNP	SLFNL1	ENST00000302946	human	ensembl	74_37	-1	known	missense	c.275	p.A92D	0.981	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFNL1	HGNC	ENSG00000171790				142	0	0	66	22	25
FOXJ3	0	genome.wustl.edu	37	1	42645437	42645437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	42645437	42645437	G	A	SNP	FOXJ3	ENST00000361346	human	ensembl	74_37	-1	known	missense	c.1813	p.R605C	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815				249	0	0	79	25	24.0385
CCDC30	0	genome.wustl.edu	37	1	43108274	43108274	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	43108274	43108274	A	C	SNP	CCDC30	ENST00000340612	human	ensembl	74_37	+1	known	missense	c.1769	p.Q590P	0.691	NULL	NULL	-	no_errors	CCDC30	HGNC	ENSG00000186409				286	0	0	88	43	32.8244
RNF220	0	genome.wustl.edu	37	1	45115379	45115379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	45115379	45115379	C	T	SNP	RNF220	ENST00000355387	human	ensembl	74_37	+1	known	missense	c.1492	p.R498W	1.000	superfamily_Peptidase_M20_dimer	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147				214	0	0	58	26	30.9524
EIF2B3	0	genome.wustl.edu	37	1	45407191	45407191	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	45407191	45407191	C	T	SNP	EIF2B3	ENST00000360403	human	ensembl	74_37	-1	known	silent	c.441	p.G147	0.964	NULL	pfam_NTP_transferase	-	no_errors	EIF2B3	HGNC	ENSG00000070785				155	1	0.641026	80	44	35.4839
LRRC41	0	genome.wustl.edu	37	1	46751470	46751470	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	46751470	46751470	G	A	SNP	LRRC41	ENST00000343304	human	ensembl	74_37	-1	known	silent	c.1059	p.G353	0.996	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128				139	0	0	34	24	41.3793
MOB3C	0	genome.wustl.edu	37	1	47078721	47078721	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	47078721	47078721	G	A	SNP	MOB3C	ENST00000271139	human	ensembl	74_37	-1	known	silent	c.429	p.A143	0.131	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB3C	HGNC	ENSG00000142961				94	0	0	23	11	32.3529
CYP4A11	0	genome.wustl.edu	37	1	47407043	47407043	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	47407043	47407043	C	T	SNP	CYP4A11	ENST00000371904	human	ensembl	74_37	-1	known	silent	c.63	p.A21	0.006	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048				217	0	0	73	26	26.2626
AJAP1	0	genome.wustl.edu	37	1	4832466	4832466	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	4832466	4832466	G	T	SNP	AJAP1	ENST00000378190	human	ensembl	74_37	+1	known	silent	c.1044	p.T348	0.995	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581				89	0	0	34	8	19.0476
OSBPL9	0	genome.wustl.edu	37	1	52253026	52253026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	52253026	52253026	C	T	SNP	OSBPL9	ENST00000371710	human	ensembl	74_37	+1	known	missense	c.2056	p.L686F	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859				190	0	0	58	35	37.6344
NRD1	0	genome.wustl.edu	37	1	52272466	52272466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	52272466	52272466	C	T	SNP	NRD1	ENST00000354831	human	ensembl	74_37	-1	known	missense	c.2314	p.A772T	1.000	superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	NRD1	HGNC	ENSG00000078618				168	0	0	90	9	9.09091
DIO1	0	genome.wustl.edu	37	1	54360030	54360030	+	Splice_Site	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	54360030	54360030	T	C	SNP	DIO1	ENST00000527060	human	ensembl	74_37	+1	known	splice_site	c.145+2	e1+2	0.000	-	-	-	no_errors	DIO1	HGNC	ENSG00000211452				221	1	0.45045	80	26	24.5283
C1orf87	0	genome.wustl.edu	37	1	60456436	60456436	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	60456436	60456436	C	A	SNP	C1orf87	ENST00000371201	human	ensembl	74_37	-1	known	missense	c.1550	p.S517I	1.000	NULL	NULL	-	no_errors	C1orf87	HGNC	ENSG00000162598				469	0	0	170	82	32.5397
ESPN	0	genome.wustl.edu	37	1	6488423	6488423	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	6488423	6488423	C	T	SNP	ESPN	ENST00000377828	human	ensembl	74_37	+1	known	silent	c.432	p.Y144	0.904	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_WH2_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_WH2_dom	-	no_errors	ESPN	HGNC	ENSG00000187017				136	0	0	73	18	19.7802
ESPN	0	genome.wustl.edu	37	1	6512002	6512002	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	6512002	6512002	C	A	SNP	ESPN	ENST00000377828	human	ensembl	74_37	+1	known	missense	c.2171	p.P724Q	0.037	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_WH2_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_WH2_dom	-	no_errors	ESPN	HGNC	ENSG00000187017				17	0	0	16	6	27.2727
LEPROT	0	genome.wustl.edu	37	1	65895579	65895579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	65895579	65895579	G	A	SNP	LEPROT	ENST00000371065	human	ensembl	74_37	+1	known	missense	c.127	p.A43T	0.968	pfam_VPS55	pfam_VPS55	-	no_errors	LEPROT	HGNC	ENSG00000213625				304	1	0.327869	136	69	33.6585
C1orf141	0	genome.wustl.edu	37	1	67561960	67561960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	67561960	67561960	G	A	SNP	C1orf141	ENST00000371006	human	ensembl	74_37	-1	known	missense	c.391	p.L131F	0.000	NULL	NULL	-	no_errors	C1orf141	HGNC	ENSG00000203963				23	0	0	26	4	13.3333
ANKRD13C	0	genome.wustl.edu	37	1	70728395	70728395	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	70728395	70728395	G	A	SNP	ANKRD13C	ENST00000464236	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ANKRD13C	HGNC	ENSG00000118454				195	0	0	117	45	27.7778
C1orf173	0	genome.wustl.edu	37	1	75072545	75072545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	75072545	75072545	G	A	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.1229	p.P410L	0.146	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				213	0	0	155	41	20.9184
ASB17	0	genome.wustl.edu	37	1	76397757	76397757	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	76397757	76397757	C	T	SNP	ASB17	ENST00000284142	human	ensembl	74_37	-1	known	missense	c.220	p.V74M	1.000	NULL	pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_SOCS_C,pfscan_SOCS_C	-	no_errors	ASB17	HGNC	ENSG00000154007				109	0	0	61	22	26.506
CLCA4	0	genome.wustl.edu	37	1	87036905	87036905	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	87036905	87036905	A	C	SNP	CLCA4	ENST00000370563	human	ensembl	74_37	+1	known	missense	c.1328	p.D443A	0.336	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602				156	0	0	72	43	37.3913
GTF2B	0	genome.wustl.edu	37	1	89323037	89323037	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	89323037	89323037	A	G	SNP	GTF2B	ENST00000370500	human	ensembl	74_37	-1	known	silent	c.669	p.C223	1.000	pfam_TFIIB_cyclin,superfamily_Cyclin-like,smart_Cyclin-like,prints_TFIIB	pfam_TFIIB_cyclin,pfam_Znf_TFIIB,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	GTF2B	HGNC	ENSG00000137947				65	0	0	41	19	31.6667
TGFBR3	0	genome.wustl.edu	37	1	92185008	92185008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	92185008	92185008	G	A	SNP	TGFBR3	ENST00000212355	human	ensembl	74_37	-1	known	missense	c.1427	p.S476L	0.089	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	TGFBR3	HGNC	ENSG00000069702				202	0	0	49	21	30
SNX7	0	genome.wustl.edu	37	1	99156668	99156668	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	99156668	99156668	T	A	SNP	SNX7	ENST00000306121	human	ensembl	74_37	+1	known	missense	c.401	p.V134D	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX7	HGNC	ENSG00000162627				63	0	0	31	14	31.1111
CNNM1	0	genome.wustl.edu	37	10	101122095	101122095	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	101122095	101122095	C	G	SNP	CNNM1	ENST00000356713	human	ensembl	74_37	+1	known	missense	c.1970	p.P657R	1.000	NULL	pfam_DUF21,pfam_CBS_dom	-	no_errors	CNNM1	HGNC	ENSG00000119946				129	0	0	27	17	38.6364
CPN1	0	genome.wustl.edu	37	10	101823471	101823471	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	101823471	101823471	G	A	SNP	CPN1	ENST00000370418	human	ensembl	74_37	-1	known	silent	c.771	p.V257	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054				113	0	0	62	17	21.519
PPRC1	0	genome.wustl.edu	37	10	103901063	103901063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	103901063	103901063	G	A	SNP	PPRC1	ENST00000278070	human	ensembl	74_37	+1	known	missense	c.2798	p.G933D	0.983	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840				122	0	0	36	28	43.75
GBF1	0	genome.wustl.edu	37	10	104140951	104140951	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	104140951	104140951	C	T	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	silent	c.5238	p.G1746	0.044	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				97	0	0	45	15	25
SUFU	0	genome.wustl.edu	37	10	104389902	104389902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	104389902	104389902	C	T	SNP	SUFU	ENST00000369902	human	ensembl	74_37	+1	known	missense	c.1445	p.P482L	0.997	pirsf_Suppressor_of_fused_euk	pfam_SUFU_C,pfam_SUFU-like_domain,pirsf_Suppressor_of_fused_euk	-	no_errors	SUFU	HGNC	ENSG00000107882				197	0	0	64	35	35.3535
SFXN2	0	genome.wustl.edu	37	10	104486822	104486822	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	104486822	104486822	C	T	SNP	SFXN2	ENST00000369893	human	ensembl	74_37	+1	known	silent	c.240	p.P80	0.295	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN2	HGNC	ENSG00000156398				103	0	0	50	16	24.2424
PDCD11	0	genome.wustl.edu	37	10	105172904	105172904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	105172904	105172904	G	A	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	missense	c.1010	p.R337Q	0.799	superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				117	0	0	54	12	18.1818
SLK	0	genome.wustl.edu	37	10	105758876	105758876	+	Splice_Site	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	105758876	105758876	G	T	SNP	SLK	ENST00000369755	human	ensembl	74_37	+1	known	splice_site	c.588-1	e6-1	1.000	-	-	-	no_errors	SLK	HGNC	ENSG00000065613				65	0	0	51	14	21.5385
SLK	0	genome.wustl.edu	37	10	105765439	105765439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	105765439	105765439	C	T	SNP	SLK	ENST00000369755	human	ensembl	74_37	+1	known	missense	c.2470	p.R824W	0.991	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_dom	-	no_errors	SLK	HGNC	ENSG00000065613				146	0	0	60	24	28.5714
COL17A1	0	genome.wustl.edu	37	10	105801069	105801069	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	105801069	105801069	C	T	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	missense	c.2639	p.G880D	1.000	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				147	0	0	62	18	22.5
ITPRIP	0	genome.wustl.edu	37	10	106074327	106074327	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	106074327	106074327	G	A	SNP	ITPRIP	ENST00000278071	human	ensembl	74_37	-1	known	missense	c.1483	p.L495F	0.122	NULL	NULL	-	no_errors	ITPRIP	HGNC	ENSG00000148841				127	0	0	58	23	28.3951
CELF2	0	genome.wustl.edu	37	10	11330379	11330379	+	Splice_Site	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	11330379	11330379	A	G	SNP	CELF2	ENST00000450189	human	ensembl	74_37	+1	known	splice_site	c.842-2	e9-2	1.000	-	-	-	no_errors	CELF2	HGNC	ENSG00000048740				82	0	0	35	13	27.0833
CASP7	0	genome.wustl.edu	37	10	115481532	115481532	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	115481532	115481532	A	T	SNP	CASP7	ENST00000369321	human	ensembl	74_37	+1	known	nonsense	c.469	p.K157*	0.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP7	HGNC	ENSG00000165806				196	0	0	75	24	24.2424
ADRB1	0	genome.wustl.edu	37	10	115804937	115804937	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	115804937	115804937	T	A	SNP	ADRB1	ENST00000369295	human	ensembl	74_37	+1	known	missense	c.1046	p.F349Y	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB1_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_5HT6_rcpt	-	no_errors	ADRB1	HGNC	ENSG00000043591				36	0	0	12	7	36.8421
VWA2	0	genome.wustl.edu	37	10	116045994	116045994	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	116045994	116045994	C	T	SNP	VWA2	ENST00000392982	human	ensembl	74_37	+1	known	missense	c.1294	p.R432C	0.064	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EG-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816				155	0	0	53	12	18.4615
INPP5F	0	genome.wustl.edu	37	10	121579040	121579040	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	121579040	121579040	T	C	SNP	INPP5F	ENST00000369080	human	ensembl	74_37	+1	known	silent	c.45	p.F15	0.001	NULL	pfam_Inositol_phosphatase	-	no_errors	INPP5F	HGNC	ENSG00000198825				53	0	0	16	2	11.1111
MCMBP	0	genome.wustl.edu	37	10	121595140	121595140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	121595140	121595140	G	A	SNP	MCMBP	ENST00000360003	human	ensembl	74_37	-1	known	missense	c.1625	p.A542V	0.007	pfam_MCM_complex-bd	pfam_MCM_complex-bd	-	no_errors	MCMBP	HGNC	ENSG00000197771				104	0	0	46	28	37.8378
C10orf120	0	genome.wustl.edu	37	10	124457678	124457678	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	124457678	124457678	T	C	SNP	C10orf120	ENST00000329446	human	ensembl	74_37	-1	known	silent	c.579	p.S193	0.000	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559				113	0	0	57	14	19.7183
CHST15	0	genome.wustl.edu	37	10	125780730	125780730	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	125780730	125780730	C	T	SNP	CHST15	ENST00000421115	human	ensembl	74_37	-1	known	nonsense	c.1389	p.W463*	0.000	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	CHST15	HGNC	ENSG00000182022				10	0	0	7	7	50
DHX32	0	genome.wustl.edu	37	10	127548546	127548546	+	Splice_Site	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	127548546	127548546	T	C	SNP	DHX32	ENST00000284690	human	ensembl	74_37	-1	known	splice_site	c.477-2	e3-2	0.998	-	-	-	no_errors	DHX32	HGNC	ENSG00000089876				53	0	0	21	13	38.2353
FOXI2	0	genome.wustl.edu	37	10	129536879	129536879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	129536879	129536879	G	A	SNP	FOXI2	ENST00000388920	human	ensembl	74_37	+1	known	missense	c.607	p.A203T	0.004	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXI2	HGNC	ENSG00000186766				23	0	0	11	5	31.25
EBF3	0	genome.wustl.edu	37	10	131761751	131761751	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	131761751	131761751	C	T	SNP	EBF3	ENST00000355311	human	ensembl	74_37	-1	known	silent	c.171	p.Q57	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF3	HGNC	ENSG00000108001				92	0	0	30	12	28.5714
SEPHS1	0	genome.wustl.edu	37	10	13371727	13371727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	13371727	13371727	C	T	SNP	SEPHS1	ENST00000327347	human	ensembl	74_37	-1	known	missense	c.622	p.A208T	1.000	pfam_AIR_synth_C_dom,superfamily_AIR_synth_C_dom,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS1	HGNC	ENSG00000086475				33	0	0	5	3	37.5
NKX6-2	0	genome.wustl.edu	37	10	134598879	134598879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	134598879	134598879	C	T	SNP	NKX6-2	ENST00000368592	human	ensembl	74_37	-1	known	missense	c.484	p.A162T	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	NKX6-2	HGNC	ENSG00000148826				52	0	0	9	7	43.75
RSU1	0	genome.wustl.edu	37	10	16635393	16635393	+	Nonstop_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	16635393	16635393	T	G	SNP	RSU1	ENST00000345264	human	ensembl	74_37	-1	known	nonstop	c.834	p.*278Y	0.971	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	RSU1	HGNC	ENSG00000148484				94	0	0	26	10	27.7778
BMI1	0	genome.wustl.edu	37	10	22618055	22618055	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	22618055	22618055	A	T	SNP	BMI1	ENST00000376663	human	ensembl	74_37	+1	known	missense	c.649	p.R217W	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	BMI1	HGNC	ENSG00000168283				313	0	0	117	55	31.9767
ARMC3	0	genome.wustl.edu	37	10	23287215	23287215	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	23287215	23287215	C	T	SNP	ARMC3	ENST00000298032	human	ensembl	74_37	+1	known	silent	c.1314	p.H438	0.013	superfamily_ARM-type_fold	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309				23	0	0	18	4	18.1818
KIAA1217	0	genome.wustl.edu	37	10	24833341	24833341	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	24833341	24833341	C	T	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	silent	c.5142	p.P1714	0.008	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				115	0	0	42	21	33.3333
ARHGAP21	0	genome.wustl.edu	37	10	24908998	24908998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	24908998	24908998	C	T	SNP	ARHGAP21	ENST00000396432	human	ensembl	74_37	-1	known	missense	c.1826	p.R609Q	0.005	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863				190	0	0	79	35	30.7018
MKX	0	genome.wustl.edu	37	10	28023549	28023549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	28023549	28023549	C	T	SNP	MKX	ENST00000375790	human	ensembl	74_37	-1	known	missense	c.674	p.R225H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MKX	HGNC	ENSG00000150051				154	0	0	74	37	33.3333
SVIL	0	genome.wustl.edu	37	10	29783879	29783879	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	29783879	29783879	T	C	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	missense	c.3805	p.R1269G	0.992	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				354	0	0	162	51	23.9437
KIAA1462	0	genome.wustl.edu	37	10	30315568	30315568	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	30315568	30315568	G	T	SNP	KIAA1462	ENST00000375377	human	ensembl	74_37	-1	known	missense	c.3509	p.P1170H	0.011	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757				234	0	0	88	37	29.6
ZEB1	0	genome.wustl.edu	37	10	31816061	31816061	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	31816061	31816061	A	G	SNP	ZEB1	ENST00000361642	human	ensembl	74_37	+1	known	missense	c.3247	p.N1083D	0.011	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516				50	0	0	12	3	20
FZD8	0	genome.wustl.edu	37	10	35929370	35929370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	35929370	35929370	G	A	SNP	FZD8	ENST00000374694	human	ensembl	74_37	-1	known	missense	c.988	p.R330C	0.999	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD8	HGNC	ENSG00000177283				15	0	0	4	3	42.8571
ZNF37A	0	genome.wustl.edu	37	10	38407491	38407491	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	38407491	38407491	A	T	SNP	ZNF37A	ENST00000351773	human	ensembl	74_37	+1	known	missense	c.1412	p.E471V	0.063	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF37A	HGNC	ENSG00000075407				102	0	0	36	30	45.4545
DIP2C	0	genome.wustl.edu	37	10	387169	387169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	387169	387169	C	T	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	missense	c.3554	p.G1185E	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				140	0	0	56	18	24.3243
BMS1	0	genome.wustl.edu	37	10	43318712	43318712	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	43318712	43318712	C	T	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	silent	c.3279	p.S1093	1.000	pfam_BMS1_TSR1_C	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				156	0	0	60	19	24.0506
RET	0	genome.wustl.edu	37	10	43600465	43600465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	43600465	43600465	C	T	SNP	RET	ENST00000355710	human	ensembl	74_37	+1	known	missense	c.691	p.R231C	1.000	pirsf_Tyr_kinase_Ret_rcpt,pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731				18	0	0	2	2	50
ALOX5	0	genome.wustl.edu	37	10	45939255	45939255	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	45939255	45939255	C	T	SNP	ALOX5	ENST00000374391	human	ensembl	74_37	+1	known	silent	c.1653	p.H551	0.564	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C,pfscan_PLAT/LH2_dom	-	no_errors	ALOX5	HGNC	ENSG00000012779				29	0	0	4	3	42.8571
ALOX5	0	genome.wustl.edu	37	10	45941110	45941110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	45941110	45941110	G	A	SNP	ALOX5	ENST00000374391	human	ensembl	74_37	+1	known	missense	c.2000	p.R667Q	1.000	superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C,pfscan_PLAT/LH2_dom	-	no_errors	ALOX5	HGNC	ENSG00000012779				187	0	0	69	26	27.3684
SYT15	0	genome.wustl.edu	37	10	46967496	46967496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	46967496	46967496	C	T	SNP	SYT15	ENST00000374323	human	ensembl	74_37	-1	known	missense	c.740	p.R247Q	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT15	HGNC	ENSG00000204176				200	0	0	72	12	14.2857
GDF10	0	genome.wustl.edu	37	10	48429056	48429056	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	48429056	48429056	C	T	SNP	GDF10	ENST00000224605	human	ensembl	74_37	-1	known	missense	c.830	p.R277H	0.000	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	GDF10	HGNC	ENSG00000107623				35	0	0	3	5	62.5
LRRC18	0	genome.wustl.edu	37	10	50122031	50122031	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	50122031	50122031	A	C	SNP	LRRC18	ENST00000374160	human	ensembl	74_37	-1	known	missense	c.170	p.L57R	0.999	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC18	HGNC	ENSG00000165383				85	0	0	36	15	29.4118
AGAP7	0	genome.wustl.edu	37	10	51464874	51464874	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	51464874	51464874	G	A	SNP	AGAP7	ENST00000374095	human	ensembl	74_37	-1	known	missense	c.1582	p.R528W	0.976	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169				549	1	0.181818	319	67	17.3575
PCDH15	0	genome.wustl.edu	37	10	55591248	55591248	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	55591248	55591248	C	T	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	silent	c.4029	p.P1343	0.001	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				100	1	0.990099	56	17	23.2877
RHOBTB1	0	genome.wustl.edu	37	10	62648943	62648943	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	62648943	62648943	C	T	SNP	RHOBTB1	ENST00000337910	human	ensembl	74_37	-1	known	silent	c.483	p.R161	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB1	HGNC	ENSG00000072422				88	0	0	46	21	31.3433
ARID5B	0	genome.wustl.edu	37	10	63700041	63700041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	63700041	63700041	G	A	SNP	ARID5B	ENST00000279873	human	ensembl	74_37	+1	known	missense	c.376	p.A126T	0.993	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347				103	0	0	46	23	33.3333
PRKCQ	0	genome.wustl.edu	37	10	6552975	6552975	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	6552975	6552975	G	A	SNP	PRKCQ	ENST00000263125	human	ensembl	74_37	-1	known	silent	c.300	p.N100	0.985	superfamily_C2_dom,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675				177	0	0	83	33	28.4483
CTNNA3	0	genome.wustl.edu	37	10	68138987	68138987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	68138987	68138987	G	A	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	missense	c.1655	p.T552M	0.864	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				179	0	0	86	42	32.8125
CTNNA3	0	genome.wustl.edu	37	10	68940122	68940122	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	68940122	68940122	C	T	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	missense	c.1000	p.A334T	0.822	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				143	0	0	55	17	23.6111
DDX21	0	genome.wustl.edu	37	10	70723160	70723160	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	70723160	70723160	G	A	SNP	DDX21	ENST00000354185	human	ensembl	74_37	+1	known	missense	c.721	p.A241T	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732				170	0	0	64	25	28.0899
HK1	0	genome.wustl.edu	37	10	71144653	71144653	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	71144653	71144653	G	T	SNP	HK1	ENST00000448642	human	ensembl	74_37	+1	known	missense	c.1926	p.Q642H	0.994	pfam_Hexokinase_N,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK1	HGNC	ENSG00000156515				264	0	0	84	50	37.3134
AIFM2	0	genome.wustl.edu	37	10	71883805	71883805	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	71883805	71883805	C	T	SNP	AIFM2	ENST00000307864	human	ensembl	74_37	-1	known	silent	c.36	p.L12	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2,prints_Rng_hydrolase-like	-	no_errors	AIFM2	HGNC	ENSG00000042286				22	0	0	7	2	22.2222
SFMBT2	0	genome.wustl.edu	37	10	7214079	7214079	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	7214079	7214079	G	A	SNP	SFMBT2	ENST00000361972	human	ensembl	74_37	-1	known	silent	c.2193	p.T731	0.005	superfamily_ARM-type_fold	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879				31	0	0	13	6	31.5789
SLC29A3	0	genome.wustl.edu	37	10	73115921	73115921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	73115921	73115921	G	A	SNP	SLC29A3	ENST00000373189	human	ensembl	74_37	+1	known	missense	c.694	p.A232T	1.000	pfam_Eqnu_transpt,prints_Eqnu_transpt	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246				149	0	0	46	24	34.2857
SFMBT2	0	genome.wustl.edu	37	10	7326038	7326038	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	7326038	7326038	A	G	SNP	SFMBT2	ENST00000361972	human	ensembl	74_37	-1	known	silent	c.600	p.P200	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879				130	0	0	72	26	26.5306
P4HA1	0	genome.wustl.edu	37	10	74813270	74813270	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	74813270	74813270	T	C	SNP	P4HA1	ENST00000263556	human	ensembl	74_37	-1	known	missense	c.542	p.Y181C	1.000	NULL	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA1	HGNC	ENSG00000122884				196	0	0	83	37	30.8333
SYNPO2L	0	genome.wustl.edu	37	10	75410664	75410664	+	Splice_Site	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	75410664	75410664	A	G	SNP	SYNPO2L	ENST00000372873	human	ensembl	74_37	-1	known	splice_site	c.100+2	e1+2	1.000	-	-	-	no_errors	SYNPO2L	HGNC	ENSG00000166317				105	0	0	42	19	31.1475
ADK	0	genome.wustl.edu	37	10	76360209	76360209	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	76360209	76360209	G	A	SNP	ADK	ENST00000286621	human	ensembl	74_37	+1	known	missense	c.835	p.V279M	1.000	pfam_PfkB_dom	pfam_PfkB_dom,prints_Adenokinase	-	no_errors	ADK	HGNC	ENSG00000156110				66	0	0	22	8	26.6667
KCNMA1	0	genome.wustl.edu	37	10	78647136	78647136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	78647136	78647136	C	T	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.3611	p.S1204N	1.000	prints_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				155	0	0	82	7	7.86517
POLR3A	0	genome.wustl.edu	37	10	79750815	79750815	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	79750815	79750815	C	T	SNP	POLR3A	ENST00000372371	human	ensembl	74_37	-1	known	silent	c.2898	p.L966	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606				27	0	0	23	3	11.5385
TAF3	0	genome.wustl.edu	37	10	8056703	8056703	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	8056703	8056703	C	T	SNP	TAF3	ENST00000344293	human	ensembl	74_37	+1	known	nonsense	c.2779	p.R927*	1.000	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632				24	0	0	6	3	33.3333
ZMIZ1	0	genome.wustl.edu	37	10	81052026	81052026	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	81052026	81052026	A	G	SNP	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	silent	c.870	p.A290	0.009	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				173	0	0	62	27	30.3371
GHITM	0	genome.wustl.edu	37	10	85904668	85904668	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	85904668	85904668	A	G	SNP	GHITM	ENST00000372134	human	ensembl	74_37	+1	known	missense	c.379	p.T127A	1.000	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	GHITM	HGNC	ENSG00000165678				136	0	0	58	24	29.2683
CCSER2	0	genome.wustl.edu	37	10	86133618	86133618	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	86133618	86133618	A	G	SNP	CCSER2	ENST00000359979	human	ensembl	74_37	+1	putative	missense	c.1661	p.Y554C	0.000	NULL	NULL	-	no_errors	CCSER2	HGNC	ENSG00000107771				39	0	0	16	4	20
WAPAL	0	genome.wustl.edu	37	10	88197332	88197332	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	88197332	88197332	A	G	SNP	WAPAL	ENST00000298767	human	ensembl	74_37	-1	known	missense	c.3541	p.S1181P	1.000	NULL	pfam_WAPL_prot,superfamily_ARM-type_fold	-	no_errors	WAPAL	HGNC	ENSG00000062650				71	0	0	29	13	30.9524
MMRN2	0	genome.wustl.edu	37	10	88703315	88703315	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	88703315	88703315	A	C	SNP	MMRN2	ENST00000372027	human	ensembl	74_37	-1	known	missense	c.1226	p.V409G	0.000	NULL	pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like_dom,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	MMRN2	HGNC	ENSG00000173269				174	0	0	56	21	27.2727
ENSG00000271880	0	genome.wustl.edu	37	10	88769294	88769294	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	88769294	88769294	C	T	SNP	ENSG00000271880	ENST00000433214	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-96C23.5	Clone_based_vega_gene	ENSG00000271880				190	0	0	85	57	40.1408
RPP30	0	genome.wustl.edu	37	10	92656100	92656100	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	92656100	92656100	C	T	SNP	RPP30	ENST00000413330	human	ensembl	74_37	+1	known	silent	c.648	p.D216	1.000	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	-	no_errors	RPP30	HGNC	ENSG00000148688				110	0	0	42	12	22.2222
CYP26C1	0	genome.wustl.edu	37	10	94828127	94828127	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	94828127	94828127	G	A	SNP	CYP26C1	ENST00000285949	human	ensembl	74_37	+1	known	silent	c.1242	p.T414	0.149	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP26C1	HGNC	ENSG00000187553				131	1	0.757576	39	6	13.3333
MMS19	0	genome.wustl.edu	37	10	99237113	99237113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	99237113	99237113	G	A	SNP	MMS19	ENST00000370782	human	ensembl	74_37	-1	known	missense	c.484	p.R162W	1.000	superfamily_ARM-type_fold	pfam_Tscrpt_C,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229				156	0	0	42	17	28.8136
GOLGA7B	0	genome.wustl.edu	37	10	99623729	99623729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	99623729	99623729	G	A	SNP	GOLGA7B	ENST00000370602	human	ensembl	74_37	+1	known	missense	c.181	p.G61R	0.950	pfam_Golgin_A_7/ERF4	pfam_Golgin_A_7/ERF4	-	no_errors	GOLGA7B	HGNC	ENSG00000155265				100	0	0	35	22	38.5965
TRPC6	0	genome.wustl.edu	37	11	101342905	101342905	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	101342905	101342905	A	G	SNP	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	missense	c.2168	p.L723S	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_TRPC_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672				174	0	0	149	39	20.7447
MUC6	0	genome.wustl.edu	37	11	1019473	1019473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	1019473	1019473	C	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.3832	p.V1278I	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				266	0	0	64	25	28.0899
MUC6	0	genome.wustl.edu	37	11	1023607	1023607	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	1023607	1023607	C	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.3428	p.G1143D	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				46	0	0	16	6	27.2727
GRIA4	0	genome.wustl.edu	37	11	105769149	105769149	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	105769149	105769149	C	T	SNP	GRIA4	ENST00000282499	human	ensembl	74_37	+1	known	missense	c.881	p.P294L	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578				41	0	0	37	14	27.451
MSANTD4	0	genome.wustl.edu	37	11	105880801	105880801	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	105880801	105880801	C	T	SNP	MSANTD4	ENST00000301919	human	ensembl	74_37	-1	known	missense	c.499	p.V167I	0.966	NULL	NULL	-	no_errors	MSANTD4	HGNC	ENSG00000170903				135	0	0	96	30	23.8095
MRVI1	0	genome.wustl.edu	37	11	10615133	10615133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	10615133	10615133	C	T	SNP	MRVI1	ENST00000421747	human	ensembl	74_37	-1	known	missense	c.2054	p.R685Q	1.000	pfam_MRVI1	pfam_MRVI1	-	no_errors	MRVI1	HGNC	ENSG00000072952				90	0	0	34	5	12.8205
ARHGAP20	0	genome.wustl.edu	37	11	110485315	110485315	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	110485315	110485315	G	T	SNP	ARHGAP20	ENST00000260283	human	ensembl	74_37	-1	known	silent	c.600	p.I200	1.000	pfam_Ras-assoc,pfscan_Ras-assoc	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727				187	0	0	89	28	23.9316
POU2AF1	0	genome.wustl.edu	37	11	111228334	111228334	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	111228334	111228334	G	T	SNP	POU2AF1	ENST00000393067	human	ensembl	74_37	-1	known	missense	c.292	p.P98T	1.000	pfam_PD-C2-AF1	pfam_PD-C2-AF1	-	no_errors	POU2AF1	HGNC	ENSG00000110777				60	0	0	32	10	23.8095
LAYN	0	genome.wustl.edu	37	11	111431071	111431071	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	111431071	111431071	T	A	SNP	LAYN	ENST00000375615	human	ensembl	74_37	+1	known	missense	c.1037	p.L346Q	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	LAYN	HGNC	ENSG00000204381				131	1	0.757576	80	25	23.8095
GALNT18	0	genome.wustl.edu	37	11	11292743	11292743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	11292743	11292743	C	T	SNP	GALNT18	ENST00000227756	human	ensembl	74_37	-1	known	missense	c.1772	p.C591Y	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT18	HGNC	ENSG00000110328				149	0	0	45	19	29.6875
DRD2	0	genome.wustl.edu	37	11	113295140	113295140	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	113295140	113295140	C	T	SNP	DRD2	ENST00000355319	human	ensembl	74_37	-1	known	silent	c.234	p.V78	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D2_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295				86	0	0	54	6	10
HTR3A	0	genome.wustl.edu	37	11	113853960	113853960	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	113853960	113853960	C	A	SNP	HTR3A	ENST00000355556	human	ensembl	74_37	+1	known	missense	c.511	p.P171T	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A,prints_5HT3_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	HTR3A	HGNC	ENSG00000166736				330	0	0	168	51	23.2877
HTR3A	0	genome.wustl.edu	37	11	113860366	113860366	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	113860366	113860366	C	T	SNP	HTR3A	ENST00000355556	human	ensembl	74_37	+1	known	nonsense	c.1432	p.R478*	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A,prints_5HT3_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	HTR3A	HGNC	ENSG00000166736				155	0	0	71	22	23.6559
DSCAML1	0	genome.wustl.edu	37	11	117308626	117308626	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	117308626	117308626	T	C	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.4597	p.K1533E	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				34	0	0	18	8	30.7692
TMEM25	0	genome.wustl.edu	37	11	118404781	118404781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	118404781	118404781	C	T	SNP	TMEM25	ENST00000533102	human	ensembl	74_37	+1	known	missense	c.874	p.P292S	1.000	NULL	pfam_CD80_C2-set,pfscan_Ig-like_dom	-	no_errors	TMEM25	HGNC	ENSG00000149582				86	0	0	53	8	13.1148
BCL9L	0	genome.wustl.edu	37	11	118771708	118771708	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	118771708	118771708	G	A	SNP	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	missense	c.2744	p.S915L	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				83	0	0	47	11	18.9655
USP47	0	genome.wustl.edu	37	11	11974417	11974417	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	11974417	11974417	A	C	SNP	USP47	ENST00000399455	human	ensembl	74_37	+1	known	missense	c.3773	p.K1258T	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP47	HGNC	ENSG00000170242				131	0	0	60	32	34.7826
TECTA	0	genome.wustl.edu	37	11	121023760	121023760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	121023760	121023760	G	A	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.4276	p.G1426S	1.000	superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				52	0	0	29	9	23.6842
SC5D	0	genome.wustl.edu	37	11	121177765	121177765	+	Splice_Site	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	121177765	121177765	G	A	SNP	SC5D	ENST00000264027	human	ensembl	74_37	+1	known	splice_site	c.445-1	e4-1	1.000	-	-	-	no_errors	SC5D	HGNC	ENSG00000109929				250	0	0	135	116	46.2151
SORL1	0	genome.wustl.edu	37	11	121414325	121414325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	121414325	121414325	G	A	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	missense	c.1754	p.G585D	1.000	smart_VPS10	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				202	1	0.492611	123	28	18.543
MICAL2	0	genome.wustl.edu	37	11	12241975	12241975	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	12241975	12241975	C	T	SNP	MICAL2	ENST00000256194	human	ensembl	74_37	+1	known	silent	c.1176	p.L392	0.737	superfamily_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL2	HGNC	ENSG00000133816				89	0	0	38	4	9.52381
RPUSD4	0	genome.wustl.edu	37	11	126075366	126075366	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	126075366	126075366	T	C	SNP	RPUSD4	ENST00000298317	human	ensembl	74_37	-1	known	missense	c.793	p.T265A	0.960	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	-	no_errors	RPUSD4	HGNC	ENSG00000165526				100	0	0	42	16	27.5862
FOXRED1	0	genome.wustl.edu	37	11	126146084	126146084	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	126146084	126146084	G	A	SNP	FOXRED1	ENST00000263578	human	ensembl	74_37	+1	known	missense	c.941	p.G314D	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	FOXRED1	HGNC	ENSG00000110074				19	0	0	13	4	23.5294
ARHGAP32	0	genome.wustl.edu	37	11	128839760	128839760	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	128839760	128839760	A	C	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	missense	c.5306	p.V1769G	0.702	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				166	0	0	96	14	12.7273
ARHGAP32	0	genome.wustl.edu	37	11	128868349	128868349	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	128868349	128868349	C	T	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	missense	c.1018	p.G340S	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				116	0	0	87	14	13.8614
PRDM10	0	genome.wustl.edu	37	11	129785593	129785593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	129785593	129785593	C	T	SNP	PRDM10	ENST00000358825	human	ensembl	74_37	-1	known	missense	c.2500	p.V834I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325				155	0	0	97	32	24.8062
ADAMTS8	0	genome.wustl.edu	37	11	130278394	130278394	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	130278394	130278394	G	A	SNP	ADAMTS8	ENST00000257359	human	ensembl	74_37	-1	known	silent	c.2064	p.S688	0.005	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS8,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS8	HGNC	ENSG00000134917				252	0	0	108	28	20.5882
NTM	0	genome.wustl.edu	37	11	131240682	131240682	+	RNA	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	131240682	131240682	A	G	SNP	NTM	ENST00000477098	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	NTM	HGNC	ENSG00000182667				84	0	0	47	5	9.61538
SPATA19	0	genome.wustl.edu	37	11	133714470	133714470	+	Silent	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	133714470	133714470	T	A	SNP	SPATA19	ENST00000299140	human	ensembl	74_37	-1	known	silent	c.201	p.V67	0.003	NULL	NULL	-	no_errors	SPATA19	HGNC	ENSG00000166118				135	0	0	86	25	22.5225
ARNTL	0	genome.wustl.edu	37	11	13399935	13399935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	13399935	13399935	G	A	SNP	ARNTL	ENST00000403290	human	ensembl	74_37	+1	known	missense	c.1466	p.R489Q	1.000	NULL	pfam_PAS_fold,pfam_PAS_fold_3,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794				48	0	0	13	5	27.7778
NCAPD3	0	genome.wustl.edu	37	11	134023240	134023240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	134023240	134023240	G	A	SNP	NCAPD3	ENST00000534548	human	ensembl	74_37	-1	known	missense	c.4271	p.T1424M	0.994	pirsf_NCAPD3	superfamily_ARM-type_fold,pirsf_NCAPD3	-	no_errors	NCAPD3	HGNC	ENSG00000151503				292	0	0	137	38	21.7143
GLB1L3	0	genome.wustl.edu	37	11	134147764	134147764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	134147764	134147764	G	A	SNP	GLB1L3	ENST00000431683	human	ensembl	74_37	+1	known	missense	c.320	p.R107H	1.000	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105				67	0	0	44	12	21.4286
PDE3B	0	genome.wustl.edu	37	11	14808095	14808095	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	14808095	14808095	G	A	SNP	PDE3B	ENST00000282096	human	ensembl	74_37	+1	known	missense	c.1142	p.R381Q	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270				282	0	0	99	42	29.7872
ABCC8	0	genome.wustl.edu	37	11	17428576	17428576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	17428576	17428576	G	A	SNP	ABCC8	ENST00000527905	human	ensembl	74_37	-1	known	missense	c.2891	p.P964L	0.019	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Surea_rcpt-1	-	no_errors	ABCC8	HGNC	ENSG00000006071				162	0	0	39	27	40.9091
USH1C	0	genome.wustl.edu	37	11	17547960	17547960	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	17547960	17547960	C	A	SNP	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	missense	c.608	p.G203V	0.421	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611				60	0	0	16	4	20
USH1C	0	genome.wustl.edu	37	11	17547982	17547982	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	17547982	17547982	G	A	SNP	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	nonsense	c.586	p.R196*	0.502	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611				51	0	0	16	4	20
SPTY2D1	0	genome.wustl.edu	37	11	18636421	18636421	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	18636421	18636421	C	T	SNP	SPTY2D1	ENST00000336349	human	ensembl	74_37	-1	known	missense	c.1400	p.R467Q	0.209	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119				104	0	0	51	25	32.8947
DBX1	0	genome.wustl.edu	37	11	20177966	20177966	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	20177966	20177966	C	T	SNP	DBX1	ENST00000227256	human	ensembl	74_37	-1	known	missense	c.943	p.E315K	0.998	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	DBX1	HGNC	ENSG00000109851				32	0	0	15	7	31.8182
DBX1	0	genome.wustl.edu	37	11	20178193	20178193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	20178193	20178193	C	T	SNP	DBX1	ENST00000227256	human	ensembl	74_37	-1	known	missense	c.716	p.R239H	0.000	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	DBX1	HGNC	ENSG00000109851				167	0	0	26	19	42.2222
BDNF	0	genome.wustl.edu	37	11	27695724	27695724	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	27695724	27695724	G	A	SNP	BDNF	ENST00000438929	human	ensembl	74_37	-1	known	silent	c.108	p.G36	0.999	NULL	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Brain-der_neurotrophic_factor,prints_Nerve_growth_factor-rel	-	no_errors	BDNF	HGNC	ENSG00000176697				25	0	0	13	7	35
PAX6	0	genome.wustl.edu	37	11	31824265	31824265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	31824265	31824265	G	A	SNP	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	missense	c.128	p.S43F	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372				35	0	0	8	7	46.6667
RCN1	0	genome.wustl.edu	37	11	32119957	32119957	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	32119957	32119957	T	C	SNP	RCN1	ENST00000054950	human	ensembl	74_37	+1	known	silent	c.510	p.R170	0.098	pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	RCN1	HGNC	ENSG00000049449				115	0	0	37	22	37.2881
HIPK3	0	genome.wustl.edu	37	11	33350149	33350149	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	33350149	33350149	G	A	SNP	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	silent	c.1191	p.P397	0.720	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				132	0	0	56	24	30
TRAF6	0	genome.wustl.edu	37	11	36511764	36511764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	36511764	36511764	G	A	SNP	TRAF6	ENST00000348124	human	ensembl	74_37	-1	known	missense	c.1193	p.P398L	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF6	HGNC	ENSG00000175104				138	0	0	66	27	29.0323
RAG1	0	genome.wustl.edu	37	11	36597479	36597479	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	36597479	36597479	C	T	SNP	RAG1	ENST00000299440	human	ensembl	74_37	+1	known	silent	c.2625	p.S875	0.220	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349				180	0	0	63	26	29.2135
CHRNA10	0	genome.wustl.edu	37	11	3688986	3688986	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	3688986	3688986	G	T	SNP	CHRNA10	ENST00000250699	human	ensembl	74_37	-1	known	missense	c.371	p.A124E	0.996	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA10	HGNC	ENSG00000129749				16	0	0	7	3	30
RHOG	0	genome.wustl.edu	37	11	3849264	3849264	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	3849264	3849264	G	A	SNP	RHOG	ENST00000351018	human	ensembl	74_37	-1	known	silent	c.105	p.T35	0.149	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOG	HGNC	ENSG00000177105				98	0	0	27	11	28.9474
ANO9	0	genome.wustl.edu	37	11	431745	431745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	431745	431745	G	A	SNP	ANO9	ENST00000332826	human	ensembl	74_37	-1	known	missense	c.488	p.T163M	0.000	NULL	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101				81	0	0	19	12	38.7097
TRIM68	0	genome.wustl.edu	37	11	4621595	4621595	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	4621595	4621595	G	A	SNP	TRIM68	ENST00000300747	human	ensembl	74_37	-1	known	missense	c.1369	p.R457C	0.010	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM68	HGNC	ENSG00000167333				96	0	0	32	17	34.6939
KBTBD4	0	genome.wustl.edu	37	11	47594872	47594872	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	47594872	47594872	A	G	SNP	KBTBD4	ENST00000430070	human	ensembl	74_37	-1	known	silent	c.1215	p.D405	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444				192	0	0	101	40	28.3688
NDUFS3	0	genome.wustl.edu	37	11	47600835	47600835	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	47600835	47600835	T	C	SNP	NDUFS3	ENST00000263774	human	ensembl	74_37	+1	known	missense	c.82	p.S28P	0.495	NULL	pfam_NADH_UbQ_OxRdtase_30kDa_su,tigrfam_NADH_DH_suC	-	no_errors	NDUFS3	HGNC	ENSG00000213619				163	0	0	64	22	25.5814
NUP160	0	genome.wustl.edu	37	11	47825038	47825038	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	47825038	47825038	A	T	SNP	NUP160	ENST00000378460	human	ensembl	74_37	-1	known	nonsense	c.2727	p.C909*	1.000	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066				175	0	0	70	22	23.913
NUP160	0	genome.wustl.edu	37	11	47837094	47837094	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	47837094	47837094	G	A	SNP	NUP160	ENST00000378460	human	ensembl	74_37	-1	known	silent	c.1623	p.A541	0.977	pfam_Nucleoporin_Nup160	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066				217	0	0	80	30	27.2727
OR51S1	0	genome.wustl.edu	37	11	4869948	4869948	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	4869948	4869948	T	C	SNP	OR51S1	ENST00000322101	human	ensembl	74_37	-1	known	missense	c.491	p.H164R	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51S1	HGNC	ENSG00000176922				218	0	0	74	31	29.5238
OR51T1	0	genome.wustl.edu	37	11	4903424	4903424	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	4903424	4903424	T	G	SNP	OR51T1	ENST00000380378	human	ensembl	74_37	+1	known	missense	c.376	p.C126G	0.743	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51T1	HGNC	ENSG00000176900				108	0	0	57	29	33.7209
PTDSS2	0	genome.wustl.edu	37	11	490558	490558	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	490558	490558	C	T	SNP	PTDSS2	ENST00000308020	human	ensembl	74_37	+1	known	silent	c.1440	p.G480	0.000	NULL	pfam_PSS	-	no_errors	PTDSS2	HGNC	ENSG00000174915				22	0	0	8	5	38.4615
OR51M1	0	genome.wustl.edu	37	11	5411061	5411061	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	5411061	5411061	T	A	SNP	OR51M1	ENST00000328611	human	ensembl	74_37	+1	known	missense	c.433	p.S145T	0.007	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51M1	HGNC	ENSG00000184698				362	0	0	142	64	31.068
UBQLNL	0	genome.wustl.edu	37	11	5537636	5537636	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	5537636	5537636	G	T	SNP	UBQLNL	ENST00000380184	human	ensembl	74_37	-1	putative	silent	c.36	p.S12	0.961	NULL	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLNL	HGNC	ENSG00000175518				138	0	0	39	20	33.8983
OR8H2	0	genome.wustl.edu	37	11	55873035	55873035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	55873035	55873035	G	A	SNP	OR8H2	ENST00000313503	human	ensembl	74_37	+1	known	missense	c.517	p.V173I	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767				368	0	0	200	18	8.25688
OR8H3	0	genome.wustl.edu	37	11	55889950	55889950	+	Silent	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	55889950	55889950	C	G	SNP	OR8H3	ENST00000313472	human	ensembl	74_37	+1	known	silent	c.102	p.L34	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H3	HGNC	ENSG00000181761				383	0	0	204	88	30.137
OR8U1	0	genome.wustl.edu	37	11	56143663	56143663	+	Silent	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	56143663	56143663	T	A	SNP	OR8U1	ENST00000302270	human	ensembl	74_37	+1	known	silent	c.564	p.T188	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8U1	HGNC	ENSG00000172199				461	0	0	264	45	14.5631
LRRC55	0	genome.wustl.edu	37	11	56949831	56949831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	56949831	56949831	C	T	SNP	LRRC55	ENST00000497933	human	ensembl	74_37	+1	known	missense	c.464	p.A155V	0.998	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC55	HGNC	ENSG00000183908				38	0	0	22	5	18.5185
RTN4RL2	0	genome.wustl.edu	37	11	57235092	57235092	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	57235092	57235092	G	A	SNP	RTN4RL2	ENST00000335099	human	ensembl	74_37	+1	known	silent	c.42	p.S14	0.387	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL2	HGNC	ENSG00000186907				272	0	0	69	33	32.3529
TMX2	0	genome.wustl.edu	37	11	57480227	57480227	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	57480227	57480227	G	A	SNP	TMX2	ENST00000278422	human	ensembl	74_37	+1	known	missense	c.137	p.C46Y	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX2	HGNC	ENSG00000213593				116	0	0	24	13	35.1351
OR9Q2	0	genome.wustl.edu	37	11	57958429	57958429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	57958429	57958429	C	T	SNP	OR9Q2	ENST00000311591	human	ensembl	74_37	+1	known	missense	c.467	p.A156V	0.843	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9Q2	HGNC	ENSG00000186513				109	0	0	46	15	24.5902
OR1S1	0	genome.wustl.edu	37	11	57983091	57983091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	57983091	57983091	C	T	SNP	OR1S1	ENST00000309433	human	ensembl	74_37	+1	known	missense	c.875	p.T292I	0.089	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1S1	HGNC	ENSG00000172774				225	0	0	107	45	29.6053
OR5B17	0	genome.wustl.edu	37	11	58126075	58126075	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	58126075	58126075	G	C	SNP	OR5B17	ENST00000357377	human	ensembl	74_37	-1	known	missense	c.468	p.I156M	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5B17	HGNC	ENSG00000197786				105	0	0	39	27	40.9091
MS4A14	0	genome.wustl.edu	37	11	60183281	60183281	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	60183281	60183281	A	G	SNP	MS4A14	ENST00000300187	human	ensembl	74_37	+1	known	silent	c.840	p.Q280	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928				104	0	0	49	18	26.8657
MS4A12	0	genome.wustl.edu	37	11	60269505	60269505	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	60269505	60269505	G	A	SNP	MS4A12	ENST00000016913	human	ensembl	74_37	+1	known	missense	c.464	p.R155H	0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A12	HGNC	ENSG00000071203				289	0	0	138	54	28.125
ZP1	0	genome.wustl.edu	37	11	60640928	60640928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	60640928	60640928	C	T	SNP	ZP1	ENST00000278853	human	ensembl	74_37	+1	known	missense	c.1321	p.R441W	0.882	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP1	HGNC	ENSG00000149506				143	0	0	41	13	24.0741
ZP1	0	genome.wustl.edu	37	11	60642610	60642610	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	60642610	60642610	C	T	SNP	ZP1	ENST00000278853	human	ensembl	74_37	+1	known	nonsense	c.1663	p.R555*	0.000	NULL	pfam_ZP_dom,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP1	HGNC	ENSG00000149506				145	0	0	40	16	28.5714
TMEM109	0	genome.wustl.edu	37	11	60689491	60689491	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	60689491	60689491	T	C	SNP	TMEM109	ENST00000227525	human	ensembl	74_37	+1	known	missense	c.586	p.Y196H	1.000	NULL	NULL	-	no_errors	TMEM109	HGNC	ENSG00000110108				141	0	0	35	20	36.3636
TMEM132A	0	genome.wustl.edu	37	11	60703652	60703652	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	60703652	60703652	G	A	SNP	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	nonsense	c.2348	p.W783*	0.000	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118				66	0	0	23	11	32.3529
TMEM132A	0	genome.wustl.edu	37	11	60703726	60703726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	60703726	60703726	G	A	SNP	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	missense	c.2422	p.V808M	0.691	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118				122	0	0	37	20	35.0877
DAK	0	genome.wustl.edu	37	11	61113877	61113877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	61113877	61113877	G	A	SNP	DAK	ENST00000394900	human	ensembl	74_37	+1	known	missense	c.1630	p.A544T	1.000	pfam_DhaL_dom,superfamily_DhaL_dom,tigrfam_DhaK_ATP	pfam_Dak1,pfam_DhaL_dom,superfamily_DhaL_dom,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476				268	0	0	142	33	18.8571
DAGLA	0	genome.wustl.edu	37	11	61495668	61495668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	61495668	61495668	G	A	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	+1	known	missense	c.680	p.R227Q	1.000	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780				246	0	0	88	9	9.27835
EEF1G	0	genome.wustl.edu	37	11	62338497	62338497	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	62338497	62338497	G	A	SNP	EEF1G	ENST00000378019	human	ensembl	74_37	-1	known	silent	c.612	p.G204	0.181	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Transl_elong_EF1_G_con,pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Transl_elong_EF1_G_con,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,pfscan_Transl_elong_EF1_G_con	-	no_errors	EEF1G	HGNC	ENSG00000254772				248	1	0.401606	113	32	22.069
PLCB3	0	genome.wustl.edu	37	11	64029923	64029923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	64029923	64029923	C	T	SNP	PLCB3	ENST00000279230	human	ensembl	74_37	+1	known	missense	c.2083	p.R695C	1.000	pirsf_PLC-beta,pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB3	HGNC	ENSG00000149782				213	0	0	66	42	38.8889
ATG2A	0	genome.wustl.edu	37	11	64678286	64678286	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	64678286	64678286	T	C	SNP	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	missense	c.1607	p.Y536C	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046				38	0	0	10	6	37.5
TRIM3	0	genome.wustl.edu	37	11	6471805	6471805	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	6471805	6471805	C	T	SNP	TRIM3	ENST00000345851	human	ensembl	74_37	-1	known	silent	c.1917	p.T639	1.000	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM3	HGNC	ENSG00000110171				152	0	0	44	15	25.4237
MAP3K11	0	genome.wustl.edu	37	11	65380977	65380977	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	65380977	65380977	C	A	SNP	MAP3K11	ENST00000309100	human	ensembl	74_37	-1	known	missense	c.251	p.W84L	1.000	pirsf_MAPKKK9/10/11,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,prints_SH3_domain,pfscan_SH3_domain	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327				75	0	0	22	5	18.5185
EFEMP2	0	genome.wustl.edu	37	11	65637409	65637409	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	65637409	65637409	G	A	SNP	EFEMP2	ENST00000307998	human	ensembl	74_37	-1	known	missense	c.646	p.R216C	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Thrombomodulin	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	EFEMP2	HGNC	ENSG00000172638				218	0	0	65	34	34.3434
EFEMP2	0	genome.wustl.edu	37	11	65638097	65638097	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	65638097	65638097	A	G	SNP	EFEMP2	ENST00000307998	human	ensembl	74_37	-1	known	missense	c.400	p.C134R	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	EFEMP2	HGNC	ENSG00000172638				63	0	0	13	5	27.7778
GAL3ST3	0	genome.wustl.edu	37	11	65810490	65810490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	65810490	65810490	C	T	SNP	GAL3ST3	ENST00000312006	human	ensembl	74_37	-1	known	missense	c.784	p.V262M	1.000	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST3	HGNC	ENSG00000175229				51	0	0	12	8	40
NPAS4	0	genome.wustl.edu	37	11	66192084	66192084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	66192084	66192084	C	T	SNP	NPAS4	ENST00000311034	human	ensembl	74_37	+1	known	missense	c.1723	p.P575S	1.000	NULL	pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576				233	0	0	158	34	17.7083
DPP3	0	genome.wustl.edu	37	11	66258993	66258993	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	66258993	66258993	A	G	SNP	DPP3	ENST00000360510	human	ensembl	74_37	+1	known	missense	c.827	p.Q276R	1.000	pirsf_Dipeptidyl-peptase3	pirsf_Dipeptidyl-peptase3	-	no_errors	DPP3	HGNC	ENSG00000254986				86	0	0	40	17	29.8246
SPTBN2	0	genome.wustl.edu	37	11	66458820	66458820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	66458820	66458820	C	T	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.5500	p.A1834T	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				155	0	0	63	25	28.4091
SPTBN2	0	genome.wustl.edu	37	11	66461663	66461663	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	66461663	66461663	G	T	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.4450	p.L1484M	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				128	0	0	67	8	10.6667
SPTBN2	0	genome.wustl.edu	37	11	66469142	66469142	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	66469142	66469142	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.2729	p.A910V	0.869	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				320	0	0	134	30	18.2927
SPTBN2	0	genome.wustl.edu	37	11	66472908	66472908	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	66472908	66472908	C	T	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	silent	c.1839	p.S613	0.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				125	0	0	37	12	24.4898
ADRBK1	0	genome.wustl.edu	37	11	67048615	67048615	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	67048615	67048615	G	T	SNP	ADRBK1	ENST00000308595	human	ensembl	74_37	+1	known	missense	c.607	p.G203C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020				126	0	0	49	15	23.4375
ANKRD13D	0	genome.wustl.edu	37	11	67069008	67069008	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	67069008	67069008	C	T	SNP	ANKRD13D	ENST00000511455	human	ensembl	74_37	+1	known	silent	c.1398	p.N466	0.015	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13D	HGNC	ENSG00000172932				113	0	0	54	15	21.7391
ALDH3B2	0	genome.wustl.edu	37	11	67431956	67431956	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	67431956	67431956	C	T	SNP	ALDH3B2	ENST00000349015	human	ensembl	74_37	-1	known	missense	c.784	p.V262M	0.005	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH3B2	HGNC	ENSG00000132746				179	0	0	69	26	27.3684
TCIRG1	0	genome.wustl.edu	37	11	67814962	67814962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	67814962	67814962	G	A	SNP	TCIRG1	ENST00000265686	human	ensembl	74_37	+1	known	missense	c.1228	p.G410R	1.000	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	TCIRG1	HGNC	ENSG00000110719				54	0	0	26	16	38.0952
ANO1	0	genome.wustl.edu	37	11	70034102	70034102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	70034102	70034102	G	A	SNP	ANO1	ENST00000355303	human	ensembl	74_37	+1	known	missense	c.2953	p.V985I	0.000	NULL	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620				11	0	0	5	5	50
NUMA1	0	genome.wustl.edu	37	11	71725778	71725778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	71725778	71725778	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	missense	c.2771	p.R924H	0.997	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				125	1	0.793651	77	18	18.9474
NUMA1	0	genome.wustl.edu	37	11	71729497	71729497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	71729497	71729497	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	missense	c.805	p.A269T	1.000	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				67	0	0	37	14	27.451
INPPL1	0	genome.wustl.edu	37	11	71948467	71948467	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	71948467	71948467	A	T	SNP	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	missense	c.3179	p.D1060V	1.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				147	1	0.675676	73	16	17.9775
PDE2A	0	genome.wustl.edu	37	11	72288632	72288632	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	72288632	72288632	C	T	SNP	PDE2A	ENST00000334456	human	ensembl	74_37	-1	known	silent	c.2622	p.L874	0.992	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642				61	0	0	41	6	12.766
ATG16L2	0	genome.wustl.edu	37	11	72540426	72540426	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	72540426	72540426	C	T	SNP	ATG16L2	ENST00000321297	human	ensembl	74_37	+1	known	silent	c.1851	p.L617	0.996	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Autophagy-rel_prot_16,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ATG16L2	HGNC	ENSG00000168010				72	0	0	14	10	41.6667
P2RY6	0	genome.wustl.edu	37	11	73007627	73007627	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	73007627	73007627	G	A	SNP	P2RY6	ENST00000349767	human	ensembl	74_37	+1	known	missense	c.64	p.E22K	1.000	prints_Protea_act_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y6_rcpt,prints_GPCR_Rhodpsn,prints_P2Y3_rcpt,prints_Protea_act_rcpt	-	no_errors	P2RY6	HGNC	ENSG00000171631				404	0	0	154	49	24.1379
C2CD3	0	genome.wustl.edu	37	11	73785385	73785385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	73785385	73785385	G	A	SNP	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	missense	c.4864	p.R1622C	0.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				92	0	0	43	15	25.8621
MAP6	0	genome.wustl.edu	37	11	75298727	75298727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	75298727	75298727	C	T	SNP	MAP6	ENST00000304771	human	ensembl	74_37	-1	known	missense	c.1819	p.G607S	0.000	NULL	pfam_MAP6/FAM154	-	no_errors	MAP6	HGNC	ENSG00000171533				242	1	0.411523	167	41	19.7115
UVRAG	0	genome.wustl.edu	37	11	75826988	75826988	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	75826988	75826988	A	G	SNP	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	silent	c.1326	p.L442	0.998	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382				105	0	0	52	8	13.3333
MYO7A	0	genome.wustl.edu	37	11	76924065	76924065	+	Silent	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	76924065	76924065	C	A	SNP	MYO7A	ENST00000409709	human	ensembl	74_37	+1	known	silent	c.6423	p.I2141	0.090	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474				14	0	0	3	6	66.6667
INTS4	0	genome.wustl.edu	37	11	77602450	77602450	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	77602450	77602450	C	T	SNP	INTS4	ENST00000534064	human	ensembl	74_37	-1	known	missense	c.2507	p.R836Q	1.000	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262				39	0	0	25	7	21.875
INTS4	0	genome.wustl.edu	37	11	77672170	77672170	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	77672170	77672170	C	T	SNP	INTS4	ENST00000433818	human	ensembl	74_37	-1	known	missense	c.379	p.V127I	0.694	NULL	NULL	-	no_errors	INTS4	HGNC	ENSG00000149262				107	0	0	97	34	25.9542
USP35	0	genome.wustl.edu	37	11	77920763	77920763	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	77920763	77920763	T	C	SNP	USP35	ENST00000529308	human	ensembl	74_37	+1	known	missense	c.1862	p.I621T	0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				136	0	0	55	22	28.5714
OR5P3	0	genome.wustl.edu	37	11	7846993	7846993	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	7846993	7846993	T	C	SNP	OR5P3	ENST00000328375	human	ensembl	74_37	-1	known	missense	c.527	p.H176R	0.980	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P3	HGNC	ENSG00000182334				134	0	0	65	32	32.9897
CEND1	0	genome.wustl.edu	37	11	788286	788286	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	788286	788286	A	G	SNP	CEND1	ENST00000330106	human	ensembl	74_37	-1	known	silent	c.291	p.P97	0.987	NULL	NULL	-	no_errors	CEND1	HGNC	ENSG00000184524				47	0	0	16	6	27.2727
PCF11	0	genome.wustl.edu	37	11	82880341	82880341	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	82880341	82880341	G	A	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	silent	c.2964	p.Q988	0.834	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				101	0	0	41	13	24.0741
TRIM49C	0	genome.wustl.edu	37	11	89774252	89774252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	89774252	89774252	G	A	SNP	TRIM49C	ENST00000448984	human	ensembl	74_37	+1	known	missense	c.893	p.S298N	0.001	superfamily_ConA-like_lec_gl_sf,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM49C	HGNC	ENSG00000204449				19	0	0	11	3	21.4286
DENND5A	0	genome.wustl.edu	37	11	9167297	9167297	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	9167297	9167297	G	T	SNP	DENND5A	ENST00000328194	human	ensembl	74_37	-1	known	missense	c.2923	p.P975T	1.000	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pfscan_PLAT/LH2_dom	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_PLAT/LH2_dom,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014				553	1	0.180505	200	102	33.7748
HEPHL1	0	genome.wustl.edu	37	11	93822027	93822027	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	93822027	93822027	C	T	SNP	HEPHL1	ENST00000315765	human	ensembl	74_37	+1	known	silent	c.2187	p.Y729	0.006	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333				127	0	0	70	4	5.40541
MAML2	0	genome.wustl.edu	37	11	95724695	95724695	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	95724695	95724695	G	A	SNP	MAML2	ENST00000524717	human	ensembl	74_37	-1	known	silent	c.2332	p.L778	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384				217	0	0	129	50	27.933
AP2A2	0	genome.wustl.edu	37	11	972112	972112	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	972112	972112	C	T	SNP	AP2A2	ENST00000332231	human	ensembl	74_37	+1	known	silent	c.330	p.R110	0.725	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020				52	0	0	16	6	27.2727
NR1H4	0	genome.wustl.edu	37	12	100930806	100930806	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	100930806	100930806	A	C	SNP	NR1H4	ENST00000551379	human	ensembl	74_37	+1	known	missense	c.942	p.E314D	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_ThyrH_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H4	HGNC	ENSG00000012504				275	0	0	116	63	35.1955
UTP20	0	genome.wustl.edu	37	12	101720873	101720873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	101720873	101720873	G	A	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	missense	c.3056	p.R1019Q	1.000	pfam_DRIM,superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				146	0	0	46	22	32.3529
TCP11L2	0	genome.wustl.edu	37	12	106729456	106729456	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	106729456	106729456	T	C	SNP	TCP11L2	ENST00000299045	human	ensembl	74_37	+1	known	missense	c.812	p.V271A	0.724	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046				103	0	0	33	15	31.25
POLR3B	0	genome.wustl.edu	37	12	106890644	106890644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	106890644	106890644	C	T	SNP	POLR3B	ENST00000228347	human	ensembl	74_37	+1	known	missense	c.2932	p.R978C	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR3B	HGNC	ENSG00000013503				132	0	0	53	31	36.9048
CRY1	0	genome.wustl.edu	37	12	107391121	107391121	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	107391121	107391121	G	A	SNP	CRY1	ENST00000008527	human	ensembl	74_37	-1	known	silent	c.1536	p.G512	1.000	NULL	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY1	HGNC	ENSG00000008405				312	0	0	152	65	29.9539
YBX3	0	genome.wustl.edu	37	12	10862613	10862613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	10862613	10862613	C	T	SNP	YBX3	ENST00000228251	human	ensembl	74_37	-1	known	missense	c.674	p.R225H	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX3	HGNC	ENSG00000060138				60	0	0	37	5	11.9048
CMKLR1	0	genome.wustl.edu	37	12	108686070	108686070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	108686070	108686070	G	A	SNP	CMKLR1	ENST00000312143	human	ensembl	74_37	-1	known	missense	c.670	p.R224C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt,prints_Anphylx_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_DEZorph_rcpt,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt,prints_Anphylx_rcpt,prints_ATII_rcpt	-	no_errors	CMKLR1	HGNC	ENSG00000174600				86	0	0	30	10	25
FICD	0	genome.wustl.edu	37	12	108912785	108912785	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	108912785	108912785	G	A	SNP	FICD	ENST00000552695	human	ensembl	74_37	+1	known	missense	c.910	p.V304M	1.000	pfam_Fido,superfamily_Fido	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855				54	0	0	29	16	35.5556
FAM222A	0	genome.wustl.edu	37	12	110206636	110206636	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	110206636	110206636	G	A	SNP	FAM222A	ENST00000358906	human	ensembl	74_37	+1	known	missense	c.902	p.R301H	0.907	NULL	NULL	-	no_errors	FAM222A	HGNC	ENSG00000139438				19	0	0	9	5	35.7143
HVCN1	0	genome.wustl.edu	37	12	111088053	111088053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	111088053	111088053	G	A	SNP	HVCN1	ENST00000242607	human	ensembl	74_37	-1	known	missense	c.676	p.R226W	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	HVCN1	HGNC	ENSG00000122986				82	0	0	44	20	31.25
HVCN1	0	genome.wustl.edu	37	12	111099069	111099069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	111099069	111099069	G	A	SNP	HVCN1	ENST00000242607	human	ensembl	74_37	-1	known	missense	c.206	p.A69V	0.000	NULL	pfam_Ion_trans_dom	-	no_errors	HVCN1	HGNC	ENSG00000122986				97	0	0	41	13	24.0741
CCDC63	0	genome.wustl.edu	37	12	111317756	111317756	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	111317756	111317756	G	A	SNP	CCDC63	ENST00000308208	human	ensembl	74_37	+1	known	missense	c.536	p.R179Q	0.997	NULL	NULL	-	no_errors	CCDC63	HGNC	ENSG00000173093				309	0	0	104	62	37.3494
TAS2R20	0	genome.wustl.edu	37	12	11150028	11150028	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	11150028	11150028	C	T	SNP	TAS2R20	ENST00000538986	human	ensembl	74_37	-1	known	silent	c.447	p.T149	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R20	HGNC	ENSG00000255837				167	0	0	164	34	17.1717
OAS2	0	genome.wustl.edu	37	12	113416586	113416586	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	113416586	113416586	C	T	SNP	OAS2	ENST00000342315	human	ensembl	74_37	+1	known	missense	c.173	p.A58V	0.000	pfscan_2-5-oligoadenylate_synth_N	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335				54	0	0	17	6	26.087
DDX54	0	genome.wustl.edu	37	12	113617042	113617042	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	113617042	113617042	C	T	SNP	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	missense	c.470	p.R157Q	0.997	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064				75	0	0	18	9	33.3333
FBXO21	0	genome.wustl.edu	37	12	117604703	117604703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	117604703	117604703	C	T	SNP	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	missense	c.1193	p.R398Q	1.000	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				205	0	0	75	45	37.5
NOS1	0	genome.wustl.edu	37	12	117669898	117669898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	117669898	117669898	G	A	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.3274	p.P1092S	0.999	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				85	0	0	19	4	17.3913
TAOK3	0	genome.wustl.edu	37	12	118598098	118598098	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	118598098	118598098	T	C	SNP	TAOK3	ENST00000392533	human	ensembl	74_37	-1	known	silent	c.2205	p.K735	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090				216	0	0	113	46	28.9308
GCN1L1	0	genome.wustl.edu	37	12	120575417	120575417	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	120575417	120575417	G	A	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	missense	c.6595	p.R2199C	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				101	0	0	36	9	20
GCN1L1	0	genome.wustl.edu	37	12	120582472	120582472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	120582472	120582472	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	missense	c.5323	p.V1775M	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				173	0	0	80	33	29.2035
PXN	0	genome.wustl.edu	37	12	120660747	120660747	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	120660747	120660747	G	T	SNP	PXN	ENST00000267257	human	ensembl	74_37	-1	known	missense	c.412	p.L138M	0.779	prints_Paxillin	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM,prints_Paxillin	-	no_errors	PXN	HGNC	ENSG00000089159				99	0	0	30	6	16.6667
HIP1R	0	genome.wustl.edu	37	12	123339488	123339488	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	123339488	123339488	G	A	SNP	HIP1R	ENST00000253083	human	ensembl	74_37	+1	known	missense	c.755	p.R252Q	1.000	pfam_ANTH_dom	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1R	HGNC	ENSG00000130787				146	0	0	51	22	30.137
DHX37	0	genome.wustl.edu	37	12	125438496	125438496	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	125438496	125438496	G	A	SNP	DHX37	ENST00000308736	human	ensembl	74_37	-1	known	silent	c.2625	p.C875	0.967	superfamily_P-loop_NTPase	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990				54	0	0	17	9	34.6154
EP400	0	genome.wustl.edu	37	12	132505628	132505628	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	132505628	132505628	A	G	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.4560	p.A1520	0.995	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				108	0	0	29	7	19.4444
EP400	0	genome.wustl.edu	37	12	132546816	132546816	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	132546816	132546816	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8154	p.N2718	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				107	0	0	46	6	11.5385
EP400	0	genome.wustl.edu	37	12	132547129	132547129	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	132547129	132547129	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8325	p.Q2775	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				102	0	0	44	6	12
ANKLE2	0	genome.wustl.edu	37	12	133306760	133306760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	133306760	133306760	G	A	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	missense	c.1988	p.P663L	0.000	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915				153	0	0	59	23	28.0488
MGST1	0	genome.wustl.edu	37	12	16510603	16510603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	16510603	16510603	G	A	SNP	MGST1	ENST00000010404	human	ensembl	74_37	+1	known	missense	c.191	p.R64Q	0.954	pfam_Membr-assoc_MAPEG	pfam_Membr-assoc_MAPEG	-	no_errors	MGST1	HGNC	ENSG00000008394				99	0	0	40	26	39.3939
CACNA2D4	0	genome.wustl.edu	37	12	1992105	1992105	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	1992105	1992105	G	A	SNP	CACNA2D4	ENST00000382722	human	ensembl	74_37	-1	known	silent	c.1413	p.H471	0.804	smart_VWF_A,pfscan_VWF_A	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D4	HGNC	ENSG00000151062				40	0	0	14	14	50
PDE3A	0	genome.wustl.edu	37	12	20833222	20833222	+	RNA	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	20833222	20833222	C	A	SNP	PDE3A	ENST00000544307	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.186	-	-	-	no_errors	PDE3A	HGNC	ENSG00000172572				91	0	0	31	31	50
ITPR2	0	genome.wustl.edu	37	12	26493202	26493202	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	26493202	26493202	G	A	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	silent	c.7917	p.G2639	0.106	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				91	0	0	27	43	61.4286
ITPR2	0	genome.wustl.edu	37	12	26848568	26848568	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	26848568	26848568	G	A	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	nonsense	c.967	p.R323*	1.000	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				77	0	0	35	20	36.3636
TULP3	0	genome.wustl.edu	37	12	3040324	3040324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	3040324	3040324	G	A	SNP	TULP3	ENST00000448120	human	ensembl	74_37	+1	known	missense	c.614	p.R205Q	0.902	pfam_Tubby_C,superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP3	HGNC	ENSG00000078246				157	0	0	55	58	51.3274
TEAD4	0	genome.wustl.edu	37	12	3131079	3131079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	3131079	3131079	G	A	SNP	TEAD4	ENST00000359864	human	ensembl	74_37	+1	known	missense	c.793	p.V265M	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905				284	0	0	135	29	17.6829
KIAA1551	0	genome.wustl.edu	37	12	32136019	32136019	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	32136019	32136019	C	T	SNP	KIAA1551	ENST00000312561	human	ensembl	74_37	+1	known	silent	c.2130	p.N710	0.000	NULL	NULL	-	no_errors	KIAA1551	HGNC	ENSG00000174718				88	0	0	63	26	29.2135
BICD1	0	genome.wustl.edu	37	12	32480705	32480705	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	32480705	32480705	A	G	SNP	BICD1	ENST00000281474	human	ensembl	74_37	+1	known	missense	c.1316	p.E439G	1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC_like_C_dom	-	no_errors	BICD1	HGNC	ENSG00000151746				72	0	0	35	17	32.6923
DNM1L	0	genome.wustl.edu	37	12	32893450	32893450	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	32893450	32893450	C	T	SNP	DNM1L	ENST00000553257	human	ensembl	74_37	+1	known	silent	c.2031	p.D677	1.000	pfam_GED,smart_GED	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_GED,prints_Dynamin_SF	-	no_errors	DNM1L	HGNC	ENSG00000087470				34	0	0	28	11	28.2051
LRRK2	0	genome.wustl.edu	37	12	40704239	40704239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	40704239	40704239	G	A	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.4324	p.A1442T	0.998	pfam_MIRO-like,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				130	0	0	58	34	36.9565
SLC38A4	0	genome.wustl.edu	37	12	47173580	47173580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	47173580	47173580	G	A	SNP	SLC38A4	ENST00000266579	human	ensembl	74_37	-1	known	missense	c.641	p.S214L	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209				77	0	0	45	16	26.2295
PCED1B	0	genome.wustl.edu	37	12	47629705	47629705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	47629705	47629705	G	A	SNP	PCED1B	ENST00000432328	human	ensembl	74_37	+1	known	missense	c.859	p.A287T	0.000	NULL	NULL	-	no_errors	PCED1B	HGNC	ENSG00000179715				36	0	0	10	3	23.0769
KMT2D	0	genome.wustl.edu	37	12	49415900	49415900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	49415900	49415900	C	T	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.16447	p.A5483T	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				354	0	0	111	25	18.3824
KMT2D	0	genome.wustl.edu	37	12	49421039	49421039	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	49421039	49421039	G	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	nonsense	c.14710	p.R4904*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				244	0	0	69	38	35.514
KMT2D	0	genome.wustl.edu	37	12	49432365	49432365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	49432365	49432365	G	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.8774	p.A2925V	0.384	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				136	0	0	38	12	24
PRPH	0	genome.wustl.edu	37	12	49689013	49689013	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	49689013	49689013	C	T	SNP	PRPH	ENST00000257860	human	ensembl	74_37	+1	known	silent	c.30	p.A10	0.989	NULL	pfam_IF,pfam_Intermed_filament_DNA-bd,prints_Keratin_I	-	no_errors	PRPH	HGNC	ENSG00000135406				30	0	0	8	5	38.4615
SPATS2	0	genome.wustl.edu	37	12	49883260	49883260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	49883260	49883260	C	T	SNP	SPATS2	ENST00000321898	human	ensembl	74_37	+1	known	missense	c.118	p.R40C	0.989	superfamily_UBA-like	pfam_DUF1387,superfamily_UBA-like	-	no_errors	SPATS2	HGNC	ENSG00000123352				83	0	0	33	19	36.5385
KCNA1	0	genome.wustl.edu	37	12	5020887	5020887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	5020887	5020887	G	A	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	missense	c.343	p.E115K	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				113	0	0	47	36	43.3735
KRT84	0	genome.wustl.edu	37	12	52779183	52779183	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	52779183	52779183	G	A	SNP	KRT84	ENST00000257951	human	ensembl	74_37	-1	known	missense	c.187	p.P63S	0.630	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT84	HGNC	ENSG00000161849				138	0	0	41	21	33.871
KRT5	0	genome.wustl.edu	37	12	52912851	52912851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	52912851	52912851	G	A	SNP	KRT5	ENST00000252242	human	ensembl	74_37	-1	known	missense	c.649	p.P217S	0.937	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT5	HGNC	ENSG00000186081				211	0	0	76	36	32.1429
ESPL1	0	genome.wustl.edu	37	12	53685587	53685587	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	53685587	53685587	A	G	SNP	ESPL1	ENST00000257934	human	ensembl	74_37	+1	known	silent	c.5634	p.G1878	0.007	pfam_Peptidase_C50	pfam_Peptidase_C50,superfamily_DsrEFH-like	-	no_errors	ESPL1	HGNC	ENSG00000135476				232	0	0	72	33	31.4286
HOXC5	0	genome.wustl.edu	37	12	54428098	54428098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	54428098	54428098	G	A	SNP	HOXC5	ENST00000312492	human	ensembl	74_37	+1	known	missense	c.491	p.R164H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_antennapedia	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXC5	HGNC	ENSG00000172789				291	0	0	66	29	30.5263
NFE2	0	genome.wustl.edu	37	12	54686848	54686848	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	54686848	54686848	G	A	SNP	NFE2	ENST00000312156	human	ensembl	74_37	-1	known	silent	c.432	p.S144	0.060	NULL	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2	HGNC	ENSG00000123405				250	0	0	90	26	22.4138
DCD	0	genome.wustl.edu	37	12	55042068	55042068	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	55042068	55042068	A	G	SNP	DCD	ENST00000293371	human	ensembl	74_37	-1	known	missense	c.20	p.L7P	0.005	NULL	NULL	-	no_errors	DCD	HGNC	ENSG00000161634				84	0	0	27	11	28.9474
LRP1	0	genome.wustl.edu	37	12	57571281	57571281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	57571281	57571281	G	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.4268	p.R1423H	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				107	0	0	32	11	25.5814
LRP1	0	genome.wustl.edu	37	12	57573274	57573274	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	57573274	57573274	T	C	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.4901	p.V1634A	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				51	0	0	27	9	25
MARS	0	genome.wustl.edu	37	12	57906729	57906729	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	57906729	57906729	T	C	SNP	MARS	ENST00000262027	human	ensembl	74_37	+1	known	missense	c.1949	p.L650P	1.000	pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986				216	0	0	87	30	25.641
B4GALNT1	0	genome.wustl.edu	37	12	58022542	58022542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	58022542	58022542	C	T	SNP	B4GALNT1	ENST00000341156	human	ensembl	74_37	-1	known	missense	c.956	p.R319H	0.095	pfam_Glyco_trans_2,pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT1	HGNC	ENSG00000135454				93	0	0	40	7	14.8936
PPM1H	0	genome.wustl.edu	37	12	63042385	63042385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	63042385	63042385	G	A	SNP	PPM1H	ENST00000228705	human	ensembl	74_37	-1	known	missense	c.1429	p.R477C	1.000	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1H	HGNC	ENSG00000111110				105	0	0	39	12	23.5294
SRGAP1	0	genome.wustl.edu	37	12	64458914	64458914	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	64458914	64458914	C	T	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	missense	c.1040	p.A347V	0.995	superfamily_Fuc/Ara_isomerase_C	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				62	0	0	13	7	35
C12orf66	0	genome.wustl.edu	37	12	64609707	64609707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	64609707	64609707	C	T	SNP	C12orf66	ENST00000398055	human	ensembl	74_37	-1	known	missense	c.272	p.R91H	1.000	pfam_DUF2003	pfam_DUF2003	-	no_errors	C12orf66	HGNC	ENSG00000174206				65	0	0	22	4	15.3846
IRAK3	0	genome.wustl.edu	37	12	66641588	66641588	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	66641588	66641588	T	C	SNP	IRAK3	ENST00000261233	human	ensembl	74_37	+1	known	silent	c.1428	p.S476	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Death_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376				86	0	0	57	29	33.7209
GRIP1	0	genome.wustl.edu	37	12	66773080	66773080	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	66773080	66773080	C	A	SNP	GRIP1	ENST00000359742	human	ensembl	74_37	-1	known	missense	c.2601	p.W867C	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974				329	0	0	111	53	32.3171
LYZ	0	genome.wustl.edu	37	12	69743886	69743886	+	Splice_Site	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	69743886	69743886	A	G	SNP	LYZ	ENST00000261267	human	ensembl	74_37	+1	known	splice_site	c.137-2	e2-2	1.000	-	-	-	no_errors	LYZ	HGNC	ENSG00000090382				90	0	0	56	17	23.2877
CNOT2	0	genome.wustl.edu	37	12	70671941	70671941	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	70671941	70671941	G	A	SNP	CNOT2	ENST00000549443	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CNOT2	HGNC	ENSG00000111596				40	0	0	25	11	30.5556
ZFC3H1	0	genome.wustl.edu	37	12	72027125	72027125	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	72027125	72027125	A	G	SNP	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	silent	c.2604	p.I868	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				29	0	0	14	7	33.3333
SYT1	0	genome.wustl.edu	37	12	79693174	79693174	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	79693174	79693174	C	T	SNP	SYT1	ENST00000261205	human	ensembl	74_37	+1	known	missense	c.653	p.S218L	0.999	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT1	HGNC	ENSG00000067715				186	0	0	104	38	26.7606
METTL25	0	genome.wustl.edu	37	12	82752388	82752388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	82752388	82752388	C	T	SNP	METTL25	ENST00000248306	human	ensembl	74_37	+1	known	missense	c.44	p.T15M	0.058	NULL	NULL	-	no_errors	METTL25	HGNC	ENSG00000127720				94	0	0	30	9	23.0769
CLEC6A	0	genome.wustl.edu	37	12	8618103	8618103	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	8618103	8618103	T	C	SNP	CLEC6A	ENST00000382073	human	ensembl	74_37	+1	known	missense	c.247	p.W83R	0.890	superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC6A	HGNC	ENSG00000205846				148	0	0	72	59	45.0382
CCER1	0	genome.wustl.edu	37	12	91348142	91348142	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	91348142	91348142	G	A	SNP	CCER1	ENST00000358859	human	ensembl	74_37	-1	known	silent	c.378	p.S126	0.000	NULL	NULL	-	no_errors	CCER1	HGNC	ENSG00000197651				50	0	0	27	9	25
DCN	0	genome.wustl.edu	37	12	91572154	91572154	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	91572154	91572154	T	C	SNP	DCN	ENST00000052754	human	ensembl	74_37	-1	known	missense	c.176	p.Q59R	1.000	pfam_LRR-contain_N,smart_LRR-contain_N,pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	DCN	HGNC	ENSG00000011465				227	0	0	85	38	30.8943
USP44	0	genome.wustl.edu	37	12	95926869	95926869	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	95926869	95926869	C	T	SNP	USP44	ENST00000258499	human	ensembl	74_37	-1	known	silent	c.1164	p.L388	0.998	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP44	HGNC	ENSG00000136014				189	0	0	86	30	25.8621
KDELC1	0	genome.wustl.edu	37	13	103443278	103443278	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	103443278	103443278	T	C	SNP	KDELC1	ENST00000376004	human	ensembl	74_37	-1	known	silent	c.1056	p.K352	0.949	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC1	HGNC	ENSG00000134901				87	0	0	17	13	43.3333
FAM155A	0	genome.wustl.edu	37	13	108518413	108518413	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	108518413	108518413	A	T	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	missense	c.532	p.S178T	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				167	1	0.595238	45	22	32.8358
FAM155A	0	genome.wustl.edu	37	13	108518443	108518443	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	108518443	108518443	G	T	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	missense	c.502	p.L168M	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				120	0	0	42	18	30
FAM155A	0	genome.wustl.edu	37	13	108518697	108518697	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	108518697	108518697	T	C	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	missense	c.248	p.Q83R	0.998	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				98	0	0	30	22	42.3077
MYO16	0	genome.wustl.edu	37	13	109672094	109672094	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	109672094	109672094	A	G	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	silent	c.2565	p.E855	0.999	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				106	0	0	33	7	17.5
RASA3	0	genome.wustl.edu	37	13	114773011	114773011	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	114773011	114773011	T	G	SNP	RASA3	ENST00000334062	human	ensembl	74_37	-1	known	missense	c.1740	p.E580D	1.000	pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA3	HGNC	ENSG00000185989				48	0	0	26	6	18.75
UPF3A	0	genome.wustl.edu	37	13	115070300	115070300	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	115070300	115070300	C	T	SNP	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	missense	c.1339	p.R447C	0.886	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				176	0	0	45	31	40.7895
SACS	0	genome.wustl.edu	37	13	23911987	23911987	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	23911987	23911987	T	C	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.6028	p.K2010E	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				51	0	0	30	11	26.8293
MIPEP	0	genome.wustl.edu	37	13	24460522	24460522	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	24460522	24460522	C	T	SNP	MIPEP	ENST00000382172	human	ensembl	74_37	-1	known	missense	c.313	p.V105M	0.999	NULL	pfam_Pept_M3A_M3B	-	no_errors	MIPEP	HGNC	ENSG00000027001				117	0	0	44	23	34.3284
ENSG00000243008	0	genome.wustl.edu	37	13	25144710	25144710	+	RNA	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	25144710	25144710	A	G	SNP	ENSG00000243008	ENST00000453498	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-556N21.1	Clone_based_vega_gene	ENSG00000243008				30	0	0	18	6	25
CENPJ	0	genome.wustl.edu	37	13	25480581	25480581	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	25480581	25480581	G	A	SNP	CENPJ	ENST00000381884	human	ensembl	74_37	-1	known	missense	c.1595	p.P532L	0.000	NULL	pfam_Tcp10_C_dom	-	no_errors	CENPJ	HGNC	ENSG00000151849				173	0	0	63	28	30.7692
ATP8A2	0	genome.wustl.edu	37	13	26343303	26343303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	26343303	26343303	G	A	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	missense	c.2504	p.G835D	1.000	superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				185	0	0	59	26	30.5882
LNX2	0	genome.wustl.edu	37	13	28122585	28122585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	28122585	28122585	C	T	SNP	LNX2	ENST00000316334	human	ensembl	74_37	-1	known	missense	c.1960	p.V654I	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX2	HGNC	ENSG00000139517				65	0	0	13	7	35
GSX1	0	genome.wustl.edu	37	13	28367782	28367782	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	28367782	28367782	C	T	SNP	GSX1	ENST00000302945	human	ensembl	74_37	+1	known	silent	c.492	p.R164	0.979	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GSX1	HGNC	ENSG00000169840				115	0	0	35	19	35.1852
FLT3	0	genome.wustl.edu	37	13	28608271	28608271	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	28608271	28608271	T	C	SNP	FLT3	ENST00000380982	human	ensembl	74_37	-1	known	silent	c.1785	p.R595	0.997	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FLT3	HGNC	ENSG00000122025				71	0	0	44	14	24.1379
FLT3	0	genome.wustl.edu	37	13	28626756	28626756	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	28626756	28626756	G	A	SNP	FLT3	ENST00000380982	human	ensembl	74_37	-1	known	silent	c.540	p.D180	0.135	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FLT3	HGNC	ENSG00000122025				128	0	0	55	18	24.6575
FLT1	0	genome.wustl.edu	37	13	28959039	28959039	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	28959039	28959039	T	A	SNP	FLT1	ENST00000282397	human	ensembl	74_37	-1	known	missense	c.2099	p.K700I	0.941	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	-	no_errors	FLT1	HGNC	ENSG00000102755				165	0	0	67	22	24.7191
MTUS2	0	genome.wustl.edu	37	13	29599849	29599849	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	29599849	29599849	G	T	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.1044	p.E348D	0.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				111	0	0	28	12	30
MEDAG	0	genome.wustl.edu	37	13	31495959	31495959	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	31495959	31495959	C	T	SNP	MEDAG	ENST00000380482	human	ensembl	74_37	+1	known	nonsense	c.763	p.R255*	1.000	NULL	NULL	-	no_errors	MEDAG	HGNC	ENSG00000102802				97	0	0	51	18	26.087
HSPH1	0	genome.wustl.edu	37	13	31711624	31711624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	31711624	31711624	G	A	SNP	HSPH1	ENST00000445273	human	ensembl	74_37	-1	known	missense	c.2414	p.P805L	1.000	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694				88	0	0	48	26	35.1351
HSPH1	0	genome.wustl.edu	37	13	31732954	31732954	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	31732954	31732954	C	T	SNP	HSPH1	ENST00000445273	human	ensembl	74_37	-1	known	missense	c.160	p.A54T	1.000	pfam_Hsp_70_fam,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694				102	0	0	51	19	27.1429
MAB21L1	0	genome.wustl.edu	37	13	36049497	36049497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	36049497	36049497	C	T	SNP	MAB21L1	ENST00000379919	human	ensembl	74_37	-1	known	missense	c.779	p.R260H	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MAB21L1	HGNC	ENSG00000180660				151	1	0.657895	54	25	31.6456
FREM2	0	genome.wustl.edu	37	13	39262698	39262698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	39262698	39262698	G	A	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.1217	p.R406H	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				137	0	0	49	17	25.7576
FOXO1	0	genome.wustl.edu	37	13	41134254	41134254	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	41134254	41134254	C	T	SNP	FOXO1	ENST00000379561	human	ensembl	74_37	-1	known	silent	c.1374	p.A458	0.739	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO1	HGNC	ENSG00000150907				64	0	0	33	17	34
AKAP11	0	genome.wustl.edu	37	13	42871202	42871202	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	42871202	42871202	T	C	SNP	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	silent	c.235	p.L79	1.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				120	0	0	79	28	26.1682
ZC3H13	0	genome.wustl.edu	37	13	46544501	46544501	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	46544501	46544501	A	G	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	silent	c.2568	p.D856	0.993	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				359	0	0	94	50	34.7222
SETDB2	0	genome.wustl.edu	37	13	50034245	50034245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	50034245	50034245	G	A	SNP	SETDB2	ENST00000317257	human	ensembl	74_37	+1	known	missense	c.19	p.D7N	1.000	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom	-	no_errors	SETDB2	HGNC	ENSG00000136169				206	0	0	80	24	23.0769
ALG11	0	genome.wustl.edu	37	13	52598190	52598190	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	52598190	52598190	C	T	SNP	ALG11	ENST00000521508	human	ensembl	74_37	+1	known	silent	c.324	p.N108	0.088	NULL	pfam_Glyco_trans_1	-	no_errors	ALG11	HGNC	ENSG00000253710				112	0	0	46	31	40.2597
NEK5	0	genome.wustl.edu	37	13	52639735	52639735	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	52639735	52639735	C	T	SNP	NEK5	ENST00000355568	human	ensembl	74_37	-1	known	silent	c.1935	p.T645	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168				70	0	0	21	7	25
PCDH8	0	genome.wustl.edu	37	13	53420348	53420348	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	53420348	53420348	A	G	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	missense	c.2224	p.S742P	0.748	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				59	0	0	20	11	35.4839
PCDH8	0	genome.wustl.edu	37	13	53421738	53421738	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	53421738	53421738	G	A	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	silent	c.834	p.N278	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				13	0	0	5	3	37.5
PCDH17	0	genome.wustl.edu	37	13	58208709	58208709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	58208709	58208709	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.2029	p.A677T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				192	0	0	66	30	31.25
PCDH9	0	genome.wustl.edu	37	13	67801602	67801602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	67801602	67801602	G	A	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	missense	c.971	p.A324V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				207	0	0	99	56	36.129
FBXL3	0	genome.wustl.edu	37	13	77589682	77589682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	77589682	77589682	C	T	SNP	FBXL3	ENST00000355619	human	ensembl	74_37	-1	known	missense	c.505	p.V169I	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom	-	no_errors	FBXL3	HGNC	ENSG00000005812				179	0	0	61	22	26.506
SLITRK5	0	genome.wustl.edu	37	13	88330296	88330296	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	88330296	88330296	G	A	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.2653	p.A885T	0.995	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				147	0	0	60	22	26.8293
HS6ST3	0	genome.wustl.edu	37	13	96743260	96743260	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	96743260	96743260	G	A	SNP	HS6ST3	ENST00000376705	human	ensembl	74_37	+1	known	silent	c.144	p.P48	0.965	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST3	HGNC	ENSG00000185352				33	0	0	3	5	62.5
ZNF219	0	genome.wustl.edu	37	14	21558908	21558908	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	21558908	21558908	C	T	SNP	ZNF219	ENST00000360947	human	ensembl	74_37	-1	known	silent	c.1956	p.P652	0.581	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Histamine_H3_rcpt	-	no_errors	ZNF219	HGNC	ENSG00000165804				24	0	0	3	4	57.1429
SUPT16H	0	genome.wustl.edu	37	14	21827736	21827736	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	21827736	21827736	C	T	SNP	SUPT16H	ENST00000216297	human	ensembl	74_37	-1	known	silent	c.2208	p.T736	0.547	NULL	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201				111	1	0.892857	44	24	35.2941
CDH24	0	genome.wustl.edu	37	14	23523355	23523355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	23523355	23523355	G	A	SNP	CDH24	ENST00000267383	human	ensembl	74_37	-1	known	missense	c.967	p.R323C	0.944	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880				200	0	0	68	27	28.4211
EFS	0	genome.wustl.edu	37	14	23829044	23829044	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	23829044	23829044	G	T	SNP	EFS	ENST00000216733	human	ensembl	74_37	-1	known	missense	c.643	p.P215T	0.996	NULL	pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	EFS	HGNC	ENSG00000100842				196	1	0.507614	44	21	32.3077
MYH6	0	genome.wustl.edu	37	14	23853869	23853869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	23853869	23853869	G	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.5347	p.R1783C	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				201	1	0.49505	76	29	27.619
MYH6	0	genome.wustl.edu	37	14	23871981	23871981	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	23871981	23871981	G	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	silent	c.927	p.Y309	0.997	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				58	0	0	11	12	52.1739
JPH4	0	genome.wustl.edu	37	14	24040511	24040511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	24040511	24040511	G	A	SNP	JPH4	ENST00000356300	human	ensembl	74_37	-1	known	missense	c.1429	p.R477W	1.000	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH4	HGNC	ENSG00000092051				126	0	0	38	20	34.4828
CPNE6	0	genome.wustl.edu	37	14	24543949	24543949	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	24543949	24543949	C	T	SNP	CPNE6	ENST00000537691	human	ensembl	74_37	+1	known	missense	c.782	p.P261L	0.999	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE6	HGNC	ENSG00000100884				60	0	0	12	9	42.8571
DCAF11	0	genome.wustl.edu	37	14	24589034	24589034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	24589034	24589034	C	T	SNP	DCAF11	ENST00000446197	human	ensembl	74_37	+1	known	missense	c.1021	p.R341W	1.000	superfamily_WD40_repeat_dom,pirsf_WD_repeat_p23,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897				50	0	0	23	13	36.1111
TM9SF1	0	genome.wustl.edu	37	14	24658815	24658815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	24658815	24658815	C	T	SNP	TM9SF1	ENST00000556387	human	ensembl	74_37	-1	known	missense	c.2254	p.G752S	0.999	pfam_EMP70	pfam_EMP70,pfam_Snf7	-	no_errors	TM9SF1	HGNC	ENSG00000100926				178	0	0	45	20	30.7692
NYNRIN	0	genome.wustl.edu	37	14	24879282	24879282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	24879282	24879282	C	T	SNP	NYNRIN	ENST00000382554	human	ensembl	74_37	+1	known	missense	c.2282	p.A761V	0.076	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978				108	0	0	34	13	27.6596
PRKD1	0	genome.wustl.edu	37	14	30135310	30135310	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	30135310	30135310	G	C	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	missense	c.508	p.L170V	0.996	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				248	0	0	101	67	39.881
STRN3	0	genome.wustl.edu	37	14	31380367	31380367	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	31380367	31380367	C	T	SNP	STRN3	ENST00000357479	human	ensembl	74_37	-1	known	missense	c.1600	p.G534S	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN3	HGNC	ENSG00000196792				42	0	0	26	11	29.7297
HEATR5A	0	genome.wustl.edu	37	14	31777196	31777196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	31777196	31777196	C	T	SNP	HEATR5A	ENST00000389961	human	ensembl	74_37	-1	known	missense	c.4703	p.R1568H	0.998	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493				70	0	0	28	10	26.3158
NFKBIA	0	genome.wustl.edu	37	14	35872932	35872932	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	35872932	35872932	G	C	SNP	NFKBIA	ENST00000216797	human	ensembl	74_37	-1	known	missense	c.300	p.D100E	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIA	HGNC	ENSG00000100906				47	0	0	12	5	29.4118
NKX2-1	0	genome.wustl.edu	37	14	36988395	36988395	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	36988395	36988395	G	A	SNP	NKX2-1	ENST00000354822	human	ensembl	74_37	-1	known	silent	c.258	p.H86	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-1	HGNC	ENSG00000136352				18	0	0	9	4	30.7692
CLEC14A	0	genome.wustl.edu	37	14	38725131	38725131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	38725131	38725131	C	T	SNP	CLEC14A	ENST00000342213	human	ensembl	74_37	-1	known	missense	c.97	p.A33T	0.874	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC14A	HGNC	ENSG00000176435				8	0	0	5	4	44.4444
NIN	0	genome.wustl.edu	37	14	51219236	51219236	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	51219236	51219236	C	A	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.4950	p.Q1650H	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				425	2	0.468384	209	87	29.3919
ABHD12B	0	genome.wustl.edu	37	14	51347195	51347195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	51347195	51347195	G	A	SNP	ABHD12B	ENST00000337334	human	ensembl	74_37	+1	known	missense	c.361	p.E121K	0.903	NULL	pfam_AB_hydrolase_1,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	ABHD12B	HGNC	ENSG00000131969				176	0	0	71	27	27.551
GMFB	0	genome.wustl.edu	37	14	54944856	54944856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	54944856	54944856	C	T	SNP	GMFB	ENST00000358056	human	ensembl	74_37	-1	known	missense	c.379	p.E127K	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,pirsf_GMF-beta	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,pirsf_GMF-beta	-	no_errors	GMFB	HGNC	ENSG00000197045				17	0	0	10	5	33.3333
PELI2	0	genome.wustl.edu	37	14	56763702	56763702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	56763702	56763702	C	T	SNP	PELI2	ENST00000267460	human	ensembl	74_37	+1	known	missense	c.1081	p.P361S	0.970	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI2	HGNC	ENSG00000139946				241	0	0	96	33	25.5814
C14orf37	0	genome.wustl.edu	37	14	58606016	58606016	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	58606016	58606016	C	T	SNP	C14orf37	ENST00000267485	human	ensembl	74_37	-1	known	missense	c.61	p.V21I	0.000	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971				196	0	0	85	24	22.0183
C14orf37	0	genome.wustl.edu	37	14	58606066	58606066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	58606066	58606066	G	A	SNP	C14orf37	ENST00000267485	human	ensembl	74_37	-1	known	missense	c.11	p.P4L	0.298	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971				109	0	0	33	17	34
DAAM1	0	genome.wustl.edu	37	14	59793693	59793693	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	59793693	59793693	G	A	SNP	DAAM1	ENST00000351081	human	ensembl	74_37	+1	known	silent	c.1356	p.A452	0.992	superfamily_ARM-type_fold,superfamily_tRNA-bd_arm	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DAAM1	HGNC	ENSG00000100592				163	0	0	58	24	29.2683
DAAM1	0	genome.wustl.edu	37	14	59826194	59826194	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	59826194	59826194	C	T	SNP	DAAM1	ENST00000351081	human	ensembl	74_37	+1	known	nonsense	c.2635	p.R879*	0.955	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DAAM1	HGNC	ENSG00000100592				88	0	0	32	11	25.5814
L3HYPDH	0	genome.wustl.edu	37	14	59950727	59950727	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	59950727	59950727	A	G	SNP	L3HYPDH	ENST00000247194	human	ensembl	74_37	-1	known	missense	c.308	p.M103T	1.000	pfam_Pro_racemase_fam,pirsf_Pro_racemase_fam	pfam_Pro_racemase_fam,pirsf_Pro_racemase_fam	-	no_errors	L3HYPDH	HGNC	ENSG00000126790				25	0	0	9	4	30.7692
KCNH5	0	genome.wustl.edu	37	14	63483611	63483611	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	63483611	63483611	G	A	SNP	KCNH5	ENST00000322893	human	ensembl	74_37	-1	known	silent	c.135	p.D45	1.000	pfam_PAS_fold,superfamily_PAS,tigrfam_PAS	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015				132	0	0	56	27	32.5301
PLEKHG3	0	genome.wustl.edu	37	14	65208053	65208053	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	65208053	65208053	G	A	SNP	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	silent	c.1818	p.A606	0.137	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822				89	0	0	31	12	27.907
DCAF5	0	genome.wustl.edu	37	14	69584873	69584873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	69584873	69584873	C	T	SNP	DCAF5	ENST00000341516	human	ensembl	74_37	-1	known	missense	c.518	p.R173Q	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF5	HGNC	ENSG00000139990				187	0	0	41	35	46.0526
SIPA1L1	0	genome.wustl.edu	37	14	72138134	72138134	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	72138134	72138134	G	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.2554	p.E852K	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				87	0	0	28	14	33.3333
MLH3	0	genome.wustl.edu	37	14	75514685	75514685	+	Silent	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	75514685	75514685	A	C	SNP	MLH3	ENST00000355774	human	ensembl	74_37	-1	known	silent	c.1674	p.T558	0.027	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_dom,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684				169	0	0	34	40	54.0541
NRXN3	0	genome.wustl.edu	37	14	79181374	79181374	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	79181374	79181374	C	T	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	nonsense	c.1930	p.Q644*	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				113	0	0	24	10	29.4118
STON2	0	genome.wustl.edu	37	14	81743798	81743798	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	81743798	81743798	G	A	SNP	STON2	ENST00000267540	human	ensembl	74_37	-1	known	silent	c.1857	p.L619	0.004	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022				107	0	0	28	15	34.8837
EML5	0	genome.wustl.edu	37	14	89206753	89206753	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	89206753	89206753	C	T	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	missense	c.689	p.R230Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				80	0	0	15	14	48.2759
SLC24A4	0	genome.wustl.edu	37	14	92790255	92790255	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	92790255	92790255	C	T	SNP	SLC24A4	ENST00000532405	human	ensembl	74_37	+1	known	silent	c.81	p.C27	1.000	NULL	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A4	HGNC	ENSG00000140090				38	0	0	8	9	52.9412
LYSMD4	0	genome.wustl.edu	37	15	100272041	100272041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	100272041	100272041	C	T	SNP	LYSMD4	ENST00000344791	human	ensembl	74_37	-1	known	missense	c.76	p.A26T	0.975	NULL	NULL	-	no_errors	LYSMD4	HGNC	ENSG00000183060				70	0	0	44	9	16.9811
ADAMTS17	0	genome.wustl.edu	37	15	100514714	100514714	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	100514714	100514714	T	C	SNP	ADAMTS17	ENST00000268070	human	ensembl	74_37	-1	known	missense	c.3181	p.I1061V	1.000	pfam_PLAC,pfscan_PLAC	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470				128	0	0	53	21	28.3784
CHSY1	0	genome.wustl.edu	37	15	101775512	101775512	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	101775512	101775512	C	T	SNP	CHSY1	ENST00000254190	human	ensembl	74_37	-1	known	silent	c.591	p.G197	0.789	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY1	HGNC	ENSG00000131873				103	0	0	69	20	22.4719
OR4M2	0	genome.wustl.edu	37	15	22368649	22368649	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	22368649	22368649	T	G	SNP	OR4M2	ENST00000332663	human	ensembl	74_37	+1	putative	missense	c.74	p.L25R	0.997	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974				621	0	0	344	60	14.8515
OR4N4	0	genome.wustl.edu	37	15	22383027	22383027	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	22383027	22383027	C	T	SNP	OR4N4	ENST00000328795	human	ensembl	74_37	+1	known	silent	c.555	p.I185	0.902	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706				229	0	0	128	44	25.5814
CYFIP1	0	genome.wustl.edu	37	15	22999351	22999351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	22999351	22999351	G	A	SNP	CYFIP1	ENST00000313077	human	ensembl	74_37	+1	known	missense	c.3223	p.A1075T	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793				171	0	0	49	20	28.9855
NPAP1	0	genome.wustl.edu	37	15	24921855	24921855	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	24921855	24921855	C	T	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	silent	c.841	p.L281	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				118	1	0.840336	49	4	7.54717
SNORD116-19	0	genome.wustl.edu	37	15	25331718	25331718	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	25331718	25331718	C	T	SNP	SNORD116-19	ENST00000384729	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD116-19	HGNC	ENSG00000207460				362	0	0	147	41	21.8085
OCA2	0	genome.wustl.edu	37	15	28117031	28117031	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	28117031	28117031	T	C	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	missense	c.2117	p.E706G	1.000	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				135	0	0	61	17	21.7949
CHRFAM7A	0	genome.wustl.edu	37	15	30659622	30659622	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	30659622	30659622	C	G	SNP	CHRFAM7A	ENST00000299847	human	ensembl	74_37	-1	known	missense	c.719	p.W240S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	-	no_errors	CHRFAM7A	HGNC	ENSG00000166664				71	0	0	31	5	13.8889
CHRFAM7A	0	genome.wustl.edu	37	15	30659688	30659688	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	30659688	30659688	A	G	SNP	CHRFAM7A	ENST00000299847	human	ensembl	74_37	-1	known	missense	c.653	p.V218A	0.997	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	-	no_errors	CHRFAM7A	HGNC	ENSG00000166664				103	0	0	39	11	22
CHRFAM7A	0	genome.wustl.edu	37	15	30664463	30664463	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	30664463	30664463	C	T	SNP	CHRFAM7A	ENST00000299847	human	ensembl	74_37	-1	known	missense	c.410	p.R137H	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	-	no_errors	CHRFAM7A	HGNC	ENSG00000166664				119	0	0	49	18	26.8657
FAN1	0	genome.wustl.edu	37	15	31210380	31210380	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	31210380	31210380	A	G	SNP	FAN1	ENST00000362065	human	ensembl	74_37	+1	known	missense	c.1825	p.T609A	0.000	NULL	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690				170	0	0	58	26	30.9524
DISP2	0	genome.wustl.edu	37	15	40661852	40661852	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	40661852	40661852	C	A	SNP	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	missense	c.3539	p.T1180K	0.997	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				273	0	0	67	16	19.2771
RPUSD2	0	genome.wustl.edu	37	15	40865992	40865992	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	40865992	40865992	C	A	SNP	RPUSD2	ENST00000315616	human	ensembl	74_37	+1	known	missense	c.1170	p.N390K	1.000	superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	-	no_errors	RPUSD2	HGNC	ENSG00000166133				128	0	0	42	4	8.69565
ZFYVE19	0	genome.wustl.edu	37	15	41105091	41105091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	41105091	41105091	C	T	SNP	ZFYVE19	ENST00000355341	human	ensembl	74_37	+1	known	missense	c.1021	p.P341S	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE19	HGNC	ENSG00000166140				89	0	0	31	8	20.5128
ITPKA	0	genome.wustl.edu	37	15	41794294	41794294	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	41794294	41794294	G	A	SNP	ITPKA	ENST00000260386	human	ensembl	74_37	+1	known	silent	c.903	p.T301	0.001	pfam_IPK	pfam_IPK	-	no_errors	ITPKA	HGNC	ENSG00000137825				35	0	0	9	4	30.7692
PLA2G4F	0	genome.wustl.edu	37	15	42441943	42441943	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	42441943	42441943	G	T	SNP	PLA2G4F	ENST00000397272	human	ensembl	74_37	-1	known	missense	c.1027	p.L343M	0.614	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907				58	0	0	21	12	36.3636
ZNF106	0	genome.wustl.edu	37	15	42743714	42743714	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	42743714	42743714	T	C	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	silent	c.687	p.V229	0.182	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				162	0	0	103	39	27.4648
TGM5	0	genome.wustl.edu	37	15	43548790	43548790	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	43548790	43548790	G	T	SNP	TGM5	ENST00000220420	human	ensembl	74_37	-1	known	silent	c.531	p.R177	0.004	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055				256	0	0	88	54	38.0282
MAP1A	0	genome.wustl.edu	37	15	43814120	43814120	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	43814120	43814120	G	A	SNP	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	missense	c.449	p.R150Q	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				101	0	0	31	17	35.4167
SPG11	0	genome.wustl.edu	37	15	44907730	44907730	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	44907730	44907730	A	C	SNP	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	missense	c.2869	p.F957V	1.000	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133				99	0	0	49	24	32.8767
DUOX1	0	genome.wustl.edu	37	15	45436333	45436333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	45436333	45436333	G	A	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	missense	c.2036	p.R679H	0.998	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				123	1	0.806452	56	11	16.4179
MYEF2	0	genome.wustl.edu	37	15	48460873	48460873	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	48460873	48460873	A	G	SNP	MYEF2	ENST00000324324	human	ensembl	74_37	-1	known	missense	c.325	p.Y109H	0.998	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MYEF2	HGNC	ENSG00000104177				178	0	0	74	28	27.451
FBN1	0	genome.wustl.edu	37	15	48797303	48797303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	48797303	48797303	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.1879	p.R627C	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				165	0	0	66	30	31.25
DMXL2	0	genome.wustl.edu	37	15	51860757	51860757	+	Splice_Site	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	51860757	51860757	T	A	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	splice_site	c.214-2	e3-2	1.000	-	-	-	no_errors	DMXL2	HGNC	ENSG00000104093				36	0	0	17	10	37.037
SCG3	0	genome.wustl.edu	37	15	52005589	52005589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	52005589	52005589	G	A	SNP	SCG3	ENST00000220478	human	ensembl	74_37	+1	known	missense	c.1267	p.D423N	0.878	NULL	NULL	-	no_errors	SCG3	HGNC	ENSG00000104112				132	0	0	49	14	22.2222
LEO1	0	genome.wustl.edu	37	15	52254643	52254643	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	52254643	52254643	G	A	SNP	LEO1	ENST00000299601	human	ensembl	74_37	-1	known	missense	c.862	p.R288C	1.000	NULL	pfam_Leo1	-	no_errors	LEO1	HGNC	ENSG00000166477				69	0	0	34	18	34.6154
MYO1E	0	genome.wustl.edu	37	15	59506895	59506895	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	59506895	59506895	C	T	SNP	MYO1E	ENST00000288235	human	ensembl	74_37	-1	known	missense	c.1132	p.D378N	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1E	HGNC	ENSG00000157483				251	0	0	116	30	20.5479
CA12	0	genome.wustl.edu	37	15	63632625	63632625	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	63632625	63632625	C	T	SNP	CA12	ENST00000178638	human	ensembl	74_37	-1	known	silent	c.609	p.P203	0.676	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA12	HGNC	ENSG00000074410				128	0	0	43	23	34.8485
HERC1	0	genome.wustl.edu	37	15	63947967	63947967	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	63947967	63947967	T	C	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.10058	p.Y3353C	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				14	0	0	10	4	28.5714
HERC1	0	genome.wustl.edu	37	15	64005666	64005666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	64005666	64005666	G	A	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.4349	p.A1450V	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				113	0	0	38	20	34.4828
RAB11A	0	genome.wustl.edu	37	15	66169844	66169844	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	66169844	66169844	G	A	SNP	RAB11A	ENST00000261890	human	ensembl	74_37	+1	known	missense	c.215	p.R72Q	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB11A	HGNC	ENSG00000103769				114	0	0	31	13	29.5455
MEGF11	0	genome.wustl.edu	37	15	66206166	66206166	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	66206166	66206166	C	T	SNP	MEGF11	ENST00000409699	human	ensembl	74_37	-1	known	silent	c.2619	p.R873	0.999	NULL	pfam_EGF_laminin,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890				65	0	0	20	8	28.5714
NOX5	0	genome.wustl.edu	37	15	69339850	69339850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	69339850	69339850	C	T	SNP	NOX5	ENST00000388866	human	ensembl	74_37	+1	known	missense	c.1790	p.A597V	1.000	pfam_Fe_red_NAD-bd_6	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NOX5	HGNC	ENSG00000255346				56	0	0	28	13	31.7073
MYO9A	0	genome.wustl.edu	37	15	72190441	72190441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	72190441	72190441	C	T	SNP	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	missense	c.4403	p.C1468Y	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933				100	0	0	55	50	47.619
SENP8	0	genome.wustl.edu	37	15	72432053	72432053	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	72432053	72432053	A	G	SNP	SENP8	ENST00000340912	human	ensembl	74_37	+1	known	missense	c.89	p.H30R	0.998	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP8	HGNC	ENSG00000166192				249	0	0	171	53	23.6607
CELF6	0	genome.wustl.edu	37	15	72612004	72612004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	72612004	72612004	C	T	SNP	CELF6	ENST00000569547	human	ensembl	74_37	-1	known	missense	c.212	p.R71H	0.998	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF6	Uniprot_gn	ENSG00000273025				9	0	0	5	6	54.5455
ARIH1	0	genome.wustl.edu	37	15	72875617	72875617	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	72875617	72875617	A	G	SNP	ARIH1	ENST00000379887	human	ensembl	74_37	+1	known	missense	c.1658	p.E553G	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	ARIH1	HGNC	ENSG00000166233				119	0	0	67	20	22.9885
CD276	0	genome.wustl.edu	37	15	73991987	73991987	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	73991987	73991987	C	T	SNP	CD276	ENST00000318443	human	ensembl	74_37	+1	known	missense	c.7	p.R3C	0.016	NULL	pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD276	HGNC	ENSG00000103855				52	0	0	21	8	27.5862
PML	0	genome.wustl.edu	37	15	74315664	74315664	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	74315664	74315664	C	A	SNP	PML	ENST00000268058	human	ensembl	74_37	+1	known	missense	c.1098	p.S366R	0.004	pfam_DUF3583	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				65	0	0	18	24	57.1429
ISLR2	0	genome.wustl.edu	37	15	74425529	74425529	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	74425529	74425529	C	T	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	missense	c.434	p.A145V	0.003	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				121	0	0	70	16	18.6047
ISLR2	0	genome.wustl.edu	37	15	74425935	74425935	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	74425935	74425935	C	T	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	silent	c.840	p.T280	0.000	pfscan_Ig-like_dom	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				64	0	0	35	8	18.6047
SEMA7A	0	genome.wustl.edu	37	15	74703284	74703284	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	74703284	74703284	C	T	SNP	SEMA7A	ENST00000261918	human	ensembl	74_37	-1	known	missense	c.1682	p.R561H	0.996	pfscan_Ig-like_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA7A	HGNC	ENSG00000138623				222	0	0	86	27	23.8938
CYP1A1	0	genome.wustl.edu	37	15	75013639	75013639	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	75013639	75013639	C	T	SNP	CYP1A1	ENST00000379727	human	ensembl	74_37	-1	known	missense	c.1067	p.R356Q	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A1	HGNC	ENSG00000140465				152	1	0.653595	60	37	38.1443
SCAMP5	0	genome.wustl.edu	37	15	75310770	75310770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	75310770	75310770	C	T	SNP	SCAMP5	ENST00000562212	human	ensembl	74_37	+1	known	missense	c.431	p.A144V	0.999	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP5	HGNC	ENSG00000198794				307	0	0	148	35	19.1257
CSPG4	0	genome.wustl.edu	37	15	75980437	75980437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	75980437	75980437	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.2969	p.R990H	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				184	0	0	54	50	48.0769
TBC1D2B	0	genome.wustl.edu	37	15	78316783	78316783	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	78316783	78316783	G	A	SNP	TBC1D2B	ENST00000300584	human	ensembl	74_37	-1	known	silent	c.1185	p.L395	0.165	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2B	HGNC	ENSG00000167202				322	0	0	78	89	53.2934
IDH3A	0	genome.wustl.edu	37	15	78453996	78453996	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	78453996	78453996	C	T	SNP	IDH3A	ENST00000299518	human	ensembl	74_37	+1	known	silent	c.363	p.Y121	0.938	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3A	HGNC	ENSG00000166411				210	0	0	141	35	19.8864
ACSBG1	0	genome.wustl.edu	37	15	78473158	78473158	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	78473158	78473158	G	A	SNP	ACSBG1	ENST00000258873	human	ensembl	74_37	-1	known	nonsense	c.1192	p.R398*	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG1	HGNC	ENSG00000103740				148	0	0	56	59	51.3043
IREB2	0	genome.wustl.edu	37	15	78732212	78732212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	78732212	78732212	G	A	SNP	IREB2	ENST00000258886	human	ensembl	74_37	+1	known	missense	c.95	p.G32D	1.000	superfamily_Acoase/IPM_deHydtase_lsu_aba	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381				38	0	0	21	19	47.5
CHRNB4	0	genome.wustl.edu	37	15	78921669	78921669	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	78921669	78921669	G	T	SNP	CHRNB4	ENST00000261751	human	ensembl	74_37	-1	known	silent	c.978	p.T326	0.011	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971				84	0	0	57	18	24
RASGRF1	0	genome.wustl.edu	37	15	79317734	79317734	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	79317734	79317734	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	silent	c.1464	p.G488	0.149	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				134	0	0	93	23	19.8276
KIAA1024	0	genome.wustl.edu	37	15	79749908	79749908	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	79749908	79749908	C	T	SNP	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	silent	c.1419	p.S473	0.650	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				84	0	0	42	14	25
STARD5	0	genome.wustl.edu	37	15	81611720	81611720	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	81611720	81611720	C	T	SNP	STARD5	ENST00000302824	human	ensembl	74_37	-1	known	silent	c.360	p.V120	0.999	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	STARD5	HGNC	ENSG00000172345				548	0	0	160	120	42.8571
AP3B2	0	genome.wustl.edu	37	15	83332340	83332340	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	83332340	83332340	C	A	SNP	AP3B2	ENST00000261722	human	ensembl	74_37	-1	known	missense	c.2412	p.K804N	1.000	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_beta	-	no_errors	AP3B2	HGNC	ENSG00000103723				111	0	0	64	19	22.8916
AKAP13	0	genome.wustl.edu	37	15	86198866	86198866	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	86198866	86198866	C	T	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	silent	c.4593	p.G1531	0.060	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				142	1	0.699301	88	18	16.9811
KLHL25	0	genome.wustl.edu	37	15	86312670	86312670	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	86312670	86312670	G	A	SNP	KLHL25	ENST00000337975	human	ensembl	74_37	-1	known	silent	c.372	p.G124	0.227	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL25	HGNC	ENSG00000183655				90	0	0	44	8	15.3846
ABHD2	0	genome.wustl.edu	37	15	89698698	89698698	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	89698698	89698698	C	T	SNP	ABHD2	ENST00000352732	human	ensembl	74_37	+1	known	silent	c.471	p.C157	0.767	pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD2	HGNC	ENSG00000140526				225	0	0	101	24	19.2
TICRR	0	genome.wustl.edu	37	15	90163032	90163032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	90163032	90163032	G	A	SNP	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	missense	c.3113	p.R1038Q	1.000	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534				167	0	0	68	51	42.8571
TICRR	0	genome.wustl.edu	37	15	90168297	90168297	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	90168297	90168297	G	A	SNP	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	missense	c.4756	p.A1586T	0.000	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534				145	0	0	57	48	45.7143
TTC23	0	genome.wustl.edu	37	15	99762036	99762036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	99762036	99762036	C	T	SNP	TTC23	ENST00000262074	human	ensembl	74_37	-1	known	missense	c.214	p.V72I	0.003	NULL	smart_TPR_repeat	-	no_errors	TTC23	HGNC	ENSG00000103852				67	0	0	50	17	25.3731
RHBDF1	0	genome.wustl.edu	37	16	108986	108986	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	108986	108986	G	A	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	missense	c.2134	p.P712S	1.000	pfam_Peptidase_S54_rhomboid_dom	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384				133	0	0	22	21	48.8372
TXNDC11	0	genome.wustl.edu	37	16	11836559	11836559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	11836559	11836559	C	T	SNP	TXNDC11	ENST00000356957	human	ensembl	74_37	-1	known	missense	c.28	p.G10S	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066				18	0	0	6	3	33.3333
SNX29	0	genome.wustl.edu	37	16	12146024	12146024	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	12146024	12146024	G	A	SNP	SNX29	ENST00000566228	human	ensembl	74_37	+1	putative	missense	c.1069	p.V357M	0.001	NULL	pfam_Run,pfam_Phox,superfamily_Phox,smart_Run,smart_Phox,pfscan_Phox,pfscan_Run	-	no_errors	SNX29	HGNC	ENSG00000048471				174	1	0.571429	70	29	29.2929
UNKL	0	genome.wustl.edu	37	16	1416329	1416329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	1416329	1416329	C	T	SNP	UNKL	ENST00000389221	human	ensembl	74_37	-1	known	missense	c.1955	p.R652Q	0.779	pfscan_Znf_RING	pfam_Znf_CCCH,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	UNKL	HGNC	ENSG00000059145				23	0	0	7	4	36.3636
ABCC6	0	genome.wustl.edu	37	16	16291892	16291892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	16291892	16291892	C	T	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	missense	c.1324	p.V442I	0.987	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				67	0	0	8	5	38.4615
MAPK8IP3	0	genome.wustl.edu	37	16	1818260	1818260	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	1818260	1818260	A	G	SNP	MAPK8IP3	ENST00000250894	human	ensembl	74_37	+1	known	missense	c.3620	p.Y1207C	0.960	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834				212	0	0	70	26	27.0833
SMG1	0	genome.wustl.edu	37	16	18847464	18847464	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	18847464	18847464	G	A	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	silent	c.7848	p.C2616	0.996	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				24	0	0	7	3	30
IQCK	0	genome.wustl.edu	37	16	19800166	19800166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	19800166	19800166	G	A	SNP	IQCK	ENST00000308214	human	ensembl	74_37	+1	known	missense	c.481	p.A161T	0.929	NULL	NULL	-	no_errors	IQCK	HGNC	ENSG00000174628				261	0	0	65	31	32.2917
PDILT	0	genome.wustl.edu	37	16	20386161	20386161	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	20386161	20386161	C	T	SNP	PDILT	ENST00000302451	human	ensembl	74_37	-1	known	missense	c.664	p.V222I	0.739	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340				172	0	0	88	32	26.6667
ACSM5	0	genome.wustl.edu	37	16	20439120	20439120	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	20439120	20439120	A	C	SNP	ACSM5	ENST00000331849	human	ensembl	74_37	+1	known	missense	c.932	p.K311T	0.095	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549				394	0	0	124	17	12.0567
ACSM5	0	genome.wustl.edu	37	16	20439148	20439148	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	20439148	20439148	C	T	SNP	ACSM5	ENST00000331849	human	ensembl	74_37	+1	known	silent	c.960	p.V320	0.957	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549				428	0	0	145	23	13.6905
DNAH3	0	genome.wustl.edu	37	16	21151866	21151866	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	21151866	21151866	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	silent	c.687	p.S229	0.126	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				187	0	0	55	26	32.0988
TSC2	0	genome.wustl.edu	37	16	2131648	2131648	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	2131648	2131648	G	A	SNP	TSC2	ENST00000219476	human	ensembl	74_37	+1	known	silent	c.3663	p.S1221	0.786	NULL	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom,prints_Tuberin	-	no_errors	TSC2	HGNC	ENSG00000103197				203	0	0	64	29	31.1828
PKD1	0	genome.wustl.edu	37	16	2168071	2168071	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	2168071	2168071	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.922	p.G308R	0.974	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				31	0	0	11	4	26.6667
E4F1	0	genome.wustl.edu	37	16	2278400	2278400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	2278400	2278400	G	A	SNP	E4F1	ENST00000301727	human	ensembl	74_37	+1	known	missense	c.185	p.R62H	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967				64	0	0	24	10	29.4118
SCNN1G	0	genome.wustl.edu	37	16	23208718	23208718	+	Silent	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	23208718	23208718	A	C	SNP	SCNN1G	ENST00000300061	human	ensembl	74_37	+1	known	silent	c.1047	p.T349	0.008	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828				113	0	0	47	19	28.7879
CHP2	0	genome.wustl.edu	37	16	23768529	23768529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	23768529	23768529	G	A	SNP	CHP2	ENST00000300113	human	ensembl	74_37	+1	known	missense	c.422	p.R141H	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CHP2	HGNC	ENSG00000166869				81	0	0	31	8	20.5128
TNRC6A	0	genome.wustl.edu	37	16	24788389	24788389	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	24788389	24788389	A	C	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.299	p.Q100P	0.488	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				106	0	0	28	21	42.8571
TNRC6A	0	genome.wustl.edu	37	16	24831653	24831653	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	24831653	24831653	G	A	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	nonsense	c.5274	p.W1758*	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				102	0	0	38	13	25.4902
TBC1D24	0	genome.wustl.edu	37	16	2547019	2547019	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	2547019	2547019	C	T	SNP	TBC1D24	ENST00000293970	human	ensembl	74_37	+1	known	silent	c.870	p.F290	0.985	superfamily_Rab-GTPase-TBC_dom	pfam_TLDc,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,smart_TLDc	-	no_errors	TBC1D24	HGNC	ENSG00000162065				108	0	0	31	21	40.3846
CEMP1	0	genome.wustl.edu	37	16	2580894	2580894	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	2580894	2580894	T	C	SNP	CEMP1	ENST00000382350	human	ensembl	74_37	-1	known	missense	c.181	p.K61E	0.000	NULL	NULL	-	no_errors	CEMP1	HGNC	ENSG00000205923				93	0	0	20	17	45.9459
CLN3	0	genome.wustl.edu	37	16	28497797	28497797	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	28497797	28497797	C	T	SNP	CLN3	ENST00000359984	human	ensembl	74_37	-1	known	nonsense	c.548	p.W183*	1.000	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	-	no_errors	CLN3	HGNC	ENSG00000188603				37	0	0	16	6	27.2727
SULT1A1	0	genome.wustl.edu	37	16	28620148	28620148	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	28620148	28620148	G	A	SNP	SULT1A1	ENST00000314752	human	ensembl	74_37	-1	known	missense	c.29	p.P10L	0.002	superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A1	HGNC	ENSG00000196502				163	0	0	63	18	22.2222
ATXN2L	0	genome.wustl.edu	37	16	28845896	28845896	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	28845896	28845896	C	A	SNP	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	missense	c.2315	p.A772E	0.998	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				292	1	0.341297	73	34	31.7757
ATXN2L	0	genome.wustl.edu	37	16	28845899	28845899	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	28845899	28845899	C	A	SNP	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	missense	c.2318	p.A773D	0.999	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				288	1	0.346021	75	36	32.4324
ATXN2L	0	genome.wustl.edu	37	16	28845903	28845903	+	Silent	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	28845903	28845903	T	A	SNP	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	silent	c.2322	p.A774	0.582	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				282	0	0	72	40	35.7143
KIF22	0	genome.wustl.edu	37	16	29816292	29816292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	29816292	29816292	C	T	SNP	KIF22	ENST00000160827	human	ensembl	74_37	+1	known	missense	c.1835	p.P612L	1.000	superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_DNA-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616				117	1	0.847458	27	8	22.8571
CD2BP2	0	genome.wustl.edu	37	16	30365563	30365563	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	30365563	30365563	C	T	SNP	CD2BP2	ENST00000305596	human	ensembl	74_37	-1	known	silent	c.159	p.E53	0.982	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	CD2BP2	HGNC	ENSG00000169217				483	0	0	213	75	26.0417
SRCAP	0	genome.wustl.edu	37	16	30734369	30734369	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	30734369	30734369	A	G	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	silent	c.3978	p.P1326	0.011	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				148	0	0	68	7	9.33333
SRCAP	0	genome.wustl.edu	37	16	30745251	30745251	+	Silent	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	30745251	30745251	A	T	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	silent	c.6531	p.L2177	0.993	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				48	0	0	19	7	26.9231
SETD1A	0	genome.wustl.edu	37	16	30991058	30991058	+	Silent	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	30991058	30991058	C	A	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	silent	c.3951	p.P1317	0.326	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				44	0	0	13	6	31.5789
ZNF646	0	genome.wustl.edu	37	16	31091754	31091754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	31091754	31091754	G	A	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.4109	p.G1370D	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				107	0	0	28	9	24.3243
ARMC5	0	genome.wustl.edu	37	16	31473294	31473294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	31473294	31473294	G	A	SNP	ARMC5	ENST00000408912	human	ensembl	74_37	+1	known	missense	c.812	p.R271H	1.000	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,superfamily_BTB/POZ_fold,smart_Armadillo,pfscan_Armadillo,pfscan_BTB/POZ-like	-	no_errors	ARMC5	HGNC	ENSG00000140691				150	1	0.662252	32	14	30.4348
ZNF205	0	genome.wustl.edu	37	16	3170262	3170262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	3170262	3170262	C	T	SNP	ZNF205	ENST00000219091	human	ensembl	74_37	+1	known	missense	c.1601	p.A534V	0.998	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF205	HGNC	ENSG00000122386				48	0	0	21	6	22.2222
ZNF720	0	genome.wustl.edu	37	16	31766642	31766642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	31766642	31766642	G	A	SNP	ZNF720	ENST00000399681	human	ensembl	74_37	+1	known	missense	c.1030	p.A344T	0.994	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF720	HGNC	ENSG00000197302				23	0	0	8	5	38.4615
SLC6A10P	0	genome.wustl.edu	37	16	32893918	32893918	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	32893918	32893918	G	A	SNP	SLC6A10P	ENST00000330048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.131	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617				275	0	0	89	26	22.6087
ARHGDIG	0	genome.wustl.edu	37	16	331846	331846	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	331846	331846	G	T	SNP	ARHGDIG	ENST00000219409	human	ensembl	74_37	+1	known	missense	c.174	p.E58D	1.000	pfam_Rho_GDI,superfamily_Ig_E-set	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	-	no_errors	ARHGDIG	HGNC	ENSG00000242173				79	0	0	11	17	60.7143
ZSCAN32	0	genome.wustl.edu	37	16	3447246	3447246	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	3447246	3447246	G	A	SNP	ZSCAN32	ENST00000396846	human	ensembl	74_37	-1	known	silent	c.312	p.N104	0.365	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN32	HGNC	ENSG00000140987				10	0	0	4	2	33.3333
CREBBP	0	genome.wustl.edu	37	16	3778706	3778706	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	3778706	3778706	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	silent	c.6342	p.G2114	0.999	pfam_Nuc_rcpt_coact_CREBbp,superfamily_Nuc_rcpt_coact	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				411	0	0	125	52	29.3785
TMEM8A	0	genome.wustl.edu	37	16	426215	426215	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	426215	426215	G	A	SNP	TMEM8A	ENST00000431232	human	ensembl	74_37	-1	known	missense	c.1145	p.T382M	0.000	NULL	pfam_DUF3522,pfscan_EG-like_dom	-	no_errors	TMEM8A	HGNC	ENSG00000129925				97	0	0	32	10	23.8095
SHCBP1	0	genome.wustl.edu	37	16	46615864	46615864	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	46615864	46615864	C	T	SNP	SHCBP1	ENST00000303383	human	ensembl	74_37	-1	known	missense	c.1796	p.C599Y	0.008	NULL	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	-	no_errors	SHCBP1	HGNC	ENSG00000171241				180	0	0	79	35	30.7018
DNAJA2	0	genome.wustl.edu	37	16	47001471	47001471	+	Silent	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	47001471	47001471	C	A	SNP	DNAJA2	ENST00000317089	human	ensembl	74_37	-1	known	silent	c.531	p.G177	0.159	pfam_HSP_DnaJ_Cys-rich_dom,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,pfscan_HSP_DnaJ_Cys-rich_dom	pfam_DnaJ_C,pfam_DnaJ_domain,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA2	HGNC	ENSG00000069345				162	0	0	67	29	30.2083
ITFG1	0	genome.wustl.edu	37	16	47192809	47192809	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	47192809	47192809	A	G	SNP	ITFG1	ENST00000320640	human	ensembl	74_37	-1	known	missense	c.1754	p.I585T	1.000	NULL	NULL	-	no_errors	ITFG1	HGNC	ENSG00000129636				171	0	0	57	24	29.6296
C16orf78	0	genome.wustl.edu	37	16	49430587	49430587	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	49430587	49430587	C	T	SNP	C16orf78	ENST00000299191	human	ensembl	74_37	+1	known	silent	c.648	p.C216	1.000	NULL	NULL	-	no_errors	C16orf78	HGNC	ENSG00000166152				56	0	0	15	9	37.5
ZNF423	0	genome.wustl.edu	37	16	49669865	49669865	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	49669865	49669865	G	A	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	silent	c.3198	p.C1066	0.632	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				36	0	0	9	9	50
ZNF423	0	genome.wustl.edu	37	16	49670529	49670529	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	49670529	49670529	A	G	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	missense	c.2534	p.V845A	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				50	0	0	40	3	6.97674
CYLD	0	genome.wustl.edu	37	16	50785592	50785592	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	50785592	50785592	C	T	SNP	CYLD	ENST00000311559	human	ensembl	74_37	+1	known	silent	c.582	p.G194	0.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Peptidase_C19/C67,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19/C67	-	no_errors	CYLD	HGNC	ENSG00000083799				245	0	0	113	31	21.5278
FAM192A	0	genome.wustl.edu	37	16	57188381	57188381	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	57188381	57188381	T	G	SNP	FAM192A	ENST00000309137	human	ensembl	74_37	-1	known	missense	c.586	p.S196R	0.999	NULL	pfam_Nefa_Nip30_N	-	no_errors	FAM192A	HGNC	ENSG00000172775				52	0	0	14	3	17.6471
KIFC3	0	genome.wustl.edu	37	16	57794222	57794222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	57794222	57794222	C	T	SNP	KIFC3	ENST00000379655	human	ensembl	74_37	-1	known	missense	c.2339	p.G780E	0.648	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC3	HGNC	ENSG00000140859				171	0	0	50	18	26.4706
MMP15	0	genome.wustl.edu	37	16	58073833	58073833	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	58073833	58073833	C	T	SNP	MMP15	ENST00000219271	human	ensembl	74_37	+1	known	silent	c.495	p.R165	0.701	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP15	HGNC	ENSG00000102996				87	0	0	25	7	21.875
CAPN15	0	genome.wustl.edu	37	16	603450	603450	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	603450	603450	C	T	SNP	CAPN15	ENST00000219611	human	ensembl	74_37	+1	known	silent	c.3195	p.S1065	1.000	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN15	HGNC	ENSG00000103326				162	0	0	39	22	36.0656
CDH8	0	genome.wustl.edu	37	16	61689541	61689541	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	61689541	61689541	T	C	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	missense	c.1739	p.D580G	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				105	0	0	38	14	26.9231
CDH11	0	genome.wustl.edu	37	16	65026835	65026835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	65026835	65026835	G	A	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.626	p.S209L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				83	0	0	38	13	25.4902
CDH11	0	genome.wustl.edu	37	16	65032614	65032614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	65032614	65032614	G	A	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.374	p.T125M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				71	0	0	39	16	29.0909
CDH5	0	genome.wustl.edu	37	16	66424452	66424452	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	66424452	66424452	A	G	SNP	CDH5	ENST00000341529	human	ensembl	74_37	+1	known	missense	c.928	p.T310A	0.973	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH5	HGNC	ENSG00000179776				67	0	0	24	14	36.8421
TPPP3	0	genome.wustl.edu	37	16	67425007	67425007	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	67425007	67425007	G	A	SNP	TPPP3	ENST00000290942	human	ensembl	74_37	-1	known	missense	c.8	p.A3V	0.100	NULL	pfam_P25-alpha	-	no_errors	TPPP3	HGNC	ENSG00000159713				65	0	0	25	8	24.2424
ATP6V0D1	0	genome.wustl.edu	37	16	67472918	67472918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	67472918	67472918	C	T	SNP	ATP6V0D1	ENST00000290949	human	ensembl	74_37	-1	known	missense	c.772	p.A258T	1.000	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	-	no_errors	ATP6V0D1	HGNC	ENSG00000159720				393	0	0	92	36	28.125
GFOD2	0	genome.wustl.edu	37	16	67709072	67709072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	67709072	67709072	G	A	SNP	GFOD2	ENST00000268797	human	ensembl	74_37	-1	known	missense	c.1144	p.R382W	1.000	NULL	pfam_Oxidoreductase_N	-	no_errors	GFOD2	HGNC	ENSG00000141098				201	0	0	60	40	40
THAP11	0	genome.wustl.edu	37	16	67877120	67877120	+	Silent	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	67877120	67877120	C	A	SNP	THAP11	ENST00000303596	human	ensembl	74_37	+1	known	silent	c.663	p.A221	0.941	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP11	HGNC	ENSG00000168286				211	0	0	45	39	46.4286
SLC7A6	0	genome.wustl.edu	37	16	68330642	68330642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	68330642	68330642	G	A	SNP	SLC7A6	ENST00000219343	human	ensembl	74_37	+1	known	missense	c.1382	p.G461E	1.000	pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A6	HGNC	ENSG00000103064				182	0	0	84	32	27.5862
COG8	0	genome.wustl.edu	37	16	69368940	69368940	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	69368940	69368940	C	T	SNP	COG8	ENST00000306875	human	ensembl	74_37	-1	known	silent	c.897	p.L299	0.980	pfam_COG8,superfamily_Cullin_repeat-like_dom,pirsf_COG8_Metazoal_Plant	pfam_COG8,superfamily_Cullin_repeat-like_dom,pirsf_COG8_Metazoal_Plant	-	no_errors	COG8	HGNC	ENSG00000213380				69	0	0	24	12	33.3333
WDR90	0	genome.wustl.edu	37	16	708547	708547	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	708547	708547	C	G	SNP	WDR90	ENST00000549091	human	ensembl	74_37	+1	novel	missense	c.2789	p.P930R	0.634	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				165	0	0	61	4	6.15385
CMTR2	0	genome.wustl.edu	37	16	71318132	71318132	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	71318132	71318132	C	G	SNP	CMTR2	ENST00000338099	human	ensembl	74_37	-1	known	missense	c.1692	p.E564D	0.551	NULL	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	CMTR2	HGNC	ENSG00000180917				94	0	0	38	16	29.6296
MARVELD3	0	genome.wustl.edu	37	16	71674726	71674726	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	71674726	71674726	C	T	SNP	MARVELD3	ENST00000299952	human	ensembl	74_37	+1	known	silent	c.1029	p.R343	0.942	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832				84	0	0	42	17	28.8136
PHLPP2	0	genome.wustl.edu	37	16	71683921	71683921	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	71683921	71683921	G	A	SNP	PHLPP2	ENST00000356272	human	ensembl	74_37	-1	known	silent	c.2844	p.C948	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom	-	no_errors	PHLPP2	HGNC	ENSG00000040199				99	0	0	39	5	11.3636
ZFHX3	0	genome.wustl.edu	37	16	72993867	72993867	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	72993867	72993867	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.178	p.R60C	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				52	0	0	17	7	29.1667
STUB1	0	genome.wustl.edu	37	16	732226	732226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	732226	732226	G	A	SNP	STUB1	ENST00000219548	human	ensembl	74_37	+1	known	missense	c.731	p.C244Y	1.000	pfam_Ubox_domain,smart_Ubox_domain	pfam_Ubox_domain,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ubox_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STUB1	HGNC	ENSG00000103266				67	0	0	42	18	30
GLG1	0	genome.wustl.edu	37	16	74519763	74519763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	74519763	74519763	C	T	SNP	GLG1	ENST00000205061	human	ensembl	74_37	-1	known	missense	c.1502	p.R501Q	1.000	pfam_Cys-rich_GLG1_repeat	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863				156	0	0	86	43	33.3333
DYNLRB2	0	genome.wustl.edu	37	16	80577198	80577198	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	80577198	80577198	G	T	SNP	DYNLRB2	ENST00000305904	human	ensembl	74_37	+1	known	missense	c.29	p.R10M	1.000	pfam_Dynein_light-rel,smart_Dynein_light-rel,pirsf_Dynein_light_roadblock-type	pfam_Dynein_light-rel,smart_Dynein_light-rel,pirsf_Dynein_light_roadblock-type	-	no_errors	DYNLRB2	HGNC	ENSG00000168589				190	0	0	86	25	22.5225
HSDL1	0	genome.wustl.edu	37	16	84163278	84163278	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	84163278	84163278	C	T	SNP	HSDL1	ENST00000219439	human	ensembl	74_37	-1	known	missense	c.769	p.A257T	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSDL1	HGNC	ENSG00000103160				153	0	0	64	28	30.4348
ADAD2	0	genome.wustl.edu	37	16	84224797	84224797	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	84224797	84224797	G	A	SNP	ADAD2	ENST00000567413	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	ADAD2	HGNC	ENSG00000140955				106	0	0	21	13	38.2353
KCNG4	0	genome.wustl.edu	37	16	84270675	84270675	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	84270675	84270675	G	A	SNP	KCNG4	ENST00000308251	human	ensembl	74_37	-1	known	silent	c.417	p.C139	0.999	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418				85	0	0	29	9	23.6842
COX4I1	0	genome.wustl.edu	37	16	85840495	85840495	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	85840495	85840495	C	T	SNP	COX4I1	ENST00000562929	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COX4I1	HGNC	ENSG00000131143				92	0	0	30	9	23.0769
ZCCHC14	0	genome.wustl.edu	37	16	87445164	87445164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	87445164	87445164	C	T	SNP	ZCCHC14	ENST00000268616	human	ensembl	74_37	-1	known	missense	c.2752	p.A918T	1.000	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	pfam_SAM_type1,pfam_Znf_CCHC,superfamily_Phox,superfamily_SAM/pointed,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC14	HGNC	ENSG00000140948				279	0	0	113	52	31.5152
BANP	0	genome.wustl.edu	37	16	88066731	88066731	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	88066731	88066731	C	T	SNP	BANP	ENST00000286122	human	ensembl	74_37	+1	known	silent	c.1056	p.T352	0.845	NULL	pfam_BEN_domain	-	no_errors	BANP	HGNC	ENSG00000172530				45	0	0	16	6	27.2727
CDT1	0	genome.wustl.edu	37	16	88874589	88874589	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	88874589	88874589	T	C	SNP	CDT1	ENST00000301019	human	ensembl	74_37	+1	known	missense	c.1544	p.I515T	0.404	NULL	pfam_CDT1_Gemini-bd-like	-	no_errors	CDT1	HGNC	ENSG00000167513				49	0	0	11	5	31.25
ANKRD11	0	genome.wustl.edu	37	16	89349023	89349023	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	89349023	89349023	C	T	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	silent	c.3927	p.T1309	0.006	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				94	0	0	38	22	36.6667
GAS7	0	genome.wustl.edu	37	17	10101597	10101597	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	10101597	10101597	G	A	SNP	GAS7	ENST00000432992	human	ensembl	74_37	-1	known	silent	c.111	p.G37	0.999	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_FCH_dom,pfam_WW_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_WW_dom,smart_SH3_domain,smart_WW_dom,smart_FCH_dom,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_WW_dom	-	no_errors	GAS7	HGNC	ENSG00000007237				85	0	0	11	17	60.7143
MYH2	0	genome.wustl.edu	37	17	10426958	10426958	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	10426958	10426958	T	A	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.5327	p.K1776M	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				249	0	0	139	11	7.33333
SLC43A2	0	genome.wustl.edu	37	17	1486601	1486601	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	1486601	1486601	C	T	SNP	SLC43A2	ENST00000382147	human	ensembl	74_37	-1	known	missense	c.1259	p.R420Q	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A2	HGNC	ENSG00000167703				192	0	0	23	45	66.1765
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				166	0	0	85	19	18.2692
TTC19	0	genome.wustl.edu	37	17	15928377	15928377	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	15928377	15928377	C	T	SNP	TTC19	ENST00000486880	human	ensembl	74_37	+1	known	silent	c.1086	p.D362	0.546	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC19	HGNC	ENSG00000011295				111	0	0	45	23	33.8235
NCOR1	0	genome.wustl.edu	37	17	15967444	15967444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	15967444	15967444	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.5159	p.R1720Q	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				116	0	0	47	19	28.7879
CCDC144A	0	genome.wustl.edu	37	17	16664902	16664902	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	16664902	16664902	T	C	SNP	CCDC144A	ENST00000360524	human	ensembl	74_37	+1	known	missense	c.3536	p.V1179A	0.994	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160				40	0	0	11	20	64.5161
RPA1	0	genome.wustl.edu	37	17	1800371	1800371	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	1800371	1800371	T	C	SNP	RPA1	ENST00000254719	human	ensembl	74_37	+1	known	missense	c.1753	p.S585P	1.000	pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold,tigrfam_Rep_factor_Rpa1	pfam_Rep_factor-A_C,pfam_Rep_factor-A_N,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,tigrfam_Rep_factor_Rpa1	-	no_errors	RPA1	HGNC	ENSG00000132383				14	0	0	4	2	33.3333
MYO15A	0	genome.wustl.edu	37	17	18023754	18023754	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	18023754	18023754	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.1640	p.S547L	0.999	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				26	0	0	4	7	63.6364
MAP2K3	0	genome.wustl.edu	37	17	21216802	21216802	+	Splice_Site	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	21216802	21216802	A	G	SNP	MAP2K3	ENST00000342679	human	ensembl	74_37	+1	known	splice_site	c.915-2	e11-2	1.000	-	-	-	no_errors	MAP2K3	HGNC	ENSG00000034152				71	0	0	27	5	15.625
ENSG00000263345	0	genome.wustl.edu	37	17	2279974	2279974	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	2279974	2279974	C	T	SNP	ENSG00000263345	ENST00000574290	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP1-59D14.5	Clone_based_vega_gene	ENSG00000263345				151	0	0	40	21	34.4262
VTN	0	genome.wustl.edu	37	17	26697012	26697012	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	26697012	26697012	A	G	SNP	VTN	ENST00000226218	human	ensembl	74_37	-1	known	silent	c.120	p.C40	1.000	pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	pfam_Hemopexin-like_repeat,pfam_Somatomedin_B_dom,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	VTN	HGNC	ENSG00000109072				109	0	0	41	10	19.6078
NEK8	0	genome.wustl.edu	37	17	27064895	27064895	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	27064895	27064895	C	A	SNP	NEK8	ENST00000543014	human	ensembl	74_37	+1	known	missense	c.1108	p.L370M	0.020	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602				207	0	0	56	34	37.7778
CPD	0	genome.wustl.edu	37	17	28773000	28773000	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	28773000	28773000	A	G	SNP	CPD	ENST00000225719	human	ensembl	74_37	+1	known	silent	c.2835	p.G945	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582				132	0	0	77	7	8.33333
ASIC2	0	genome.wustl.edu	37	17	31618778	31618778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	31618778	31618778	C	T	SNP	ASIC2	ENST00000225823	human	ensembl	74_37	-1	known	missense	c.356	p.R119Q	1.000	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC2	HGNC	ENSG00000108684				63	0	0	11	9	45
OR3A1	0	genome.wustl.edu	37	17	3195645	3195645	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	3195645	3195645	T	G	SNP	OR3A1	ENST00000323404	human	ensembl	74_37	-1	known	missense	c.232	p.S78R	0.425	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR3A1	HGNC	ENSG00000180090				101	0	0	22	34	60.7143
TMEM132E	0	genome.wustl.edu	37	17	32962034	32962034	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	32962034	32962034	C	T	SNP	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	silent	c.1635	p.G545	0.999	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				63	0	0	24	8	25
TMEM132E	0	genome.wustl.edu	37	17	32964652	32964652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	32964652	32964652	G	A	SNP	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	missense	c.2356	p.G786S	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				129	0	0	36	13	26.5306
ZNF830	0	genome.wustl.edu	37	17	33288913	33288913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	33288913	33288913	G	A	SNP	ZNF830	ENST00000361952	human	ensembl	74_37	+1	known	missense	c.328	p.D110N	0.000	NULL	smart_Znf_U1	-	no_errors	ZNF830	HGNC	ENSG00000198783				152	0	0	57	32	35.9551
SLC35G3	0	genome.wustl.edu	37	17	33520662	33520662	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	33520662	33520662	A	G	SNP	SLC35G3	ENST00000297307	human	ensembl	74_37	-1	known	missense	c.665	p.V222A	0.971	NULL	pfam_DMT	-	no_errors	SLC35G3	HGNC	ENSG00000164729				203	1	0.490196	65	23	26.1364
TRPV1	0	genome.wustl.edu	37	17	3470151	3470151	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	3470151	3470151	G	A	SNP	TRPV1	ENST00000399756	human	ensembl	74_37	-1	known	silent	c.2478	p.D826	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV1	HGNC	ENSG00000196689				84	0	0	12	20	62.5
MYO19	0	genome.wustl.edu	37	17	34883424	34883424	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	34883424	34883424	C	T	SNP	MYO19	ENST00000431794	human	ensembl	74_37	-1	known	silent	c.258	p.S86	0.723	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO19	HGNC	ENSG00000141140				72	0	0	13	3	18.75
TAX1BP3	0	genome.wustl.edu	37	17	3567173	3567173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	3567173	3567173	C	T	SNP	TAX1BP3	ENST00000225525	human	ensembl	74_37	-1	known	missense	c.244	p.G82S	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_Tax1-binding_p3,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_Tax1-binding_p3,pfscan_PDZ	-	no_errors	TAX1BP3	HGNC	ENSG00000213977				43	0	0	10	8	44.4444
TAX1BP3	0	genome.wustl.edu	37	17	3567980	3567980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	3567980	3567980	G	A	SNP	TAX1BP3	ENST00000225525	human	ensembl	74_37	-1	known	missense	c.152	p.T51M	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_Tax1-binding_p3,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_Tax1-binding_p3,pfscan_PDZ	-	no_errors	TAX1BP3	HGNC	ENSG00000213977				98	0	0	15	36	70.5882
SYNRG	0	genome.wustl.edu	37	17	35914112	35914112	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	35914112	35914112	G	A	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	silent	c.1713	p.T571	0.971	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114				169	0	0	96	38	28.3582
FBXO47	0	genome.wustl.edu	37	17	37099920	37099920	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	37099920	37099920	G	T	SNP	FBXO47	ENST00000378079	human	ensembl	74_37	-1	known	missense	c.863	p.A288D	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO47	HGNC	ENSG00000204952				109	0	0	52	24	31.5789
PLXDC1	0	genome.wustl.edu	37	17	37264408	37264408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	37264408	37264408	G	A	SNP	PLXDC1	ENST00000315392	human	ensembl	74_37	-1	known	missense	c.560	p.S187F	1.000	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold	-	no_errors	PLXDC1	HGNC	ENSG00000161381				268	0	0	81	33	28.9474
NEUROD2	0	genome.wustl.edu	37	17	37761954	37761954	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	37761954	37761954	C	T	SNP	NEUROD2	ENST00000302584	human	ensembl	74_37	-1	known	missense	c.899	p.S300N	1.000	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD2	HGNC	ENSG00000171532				38	0	0	7	4	36.3636
THRA	0	genome.wustl.edu	37	17	38243031	38243031	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	38243031	38243031	C	T	SNP	THRA	ENST00000264637	human	ensembl	74_37	+1	known	silent	c.648	p.S216	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351				124	0	0	35	16	31.3725
KRTAP4-6	0	genome.wustl.edu	37	17	39296361	39296361	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	39296361	39296361	A	G	SNP	KRTAP4-6	ENST00000345847	human	ensembl	74_37	-1	known	missense	c.379	p.S127P	0.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-6	HGNC	ENSG00000198090				59	0	0	29	4	12.1212
KRT33B	0	genome.wustl.edu	37	17	39521092	39521092	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	39521092	39521092	G	A	SNP	KRT33B	ENST00000251646	human	ensembl	74_37	-1	known	missense	c.1036	p.R346W	0.971	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT33B	HGNC	ENSG00000131738				281	0	0	73	38	34.2342
KRT13	0	genome.wustl.edu	37	17	39661430	39661430	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	39661430	39661430	G	T	SNP	KRT13	ENST00000246635	human	ensembl	74_37	-1	known	missense	c.373	p.L125M	0.984	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401				220	0	0	65	25	27.7778
KRT15	0	genome.wustl.edu	37	17	39671934	39671934	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	39671934	39671934	A	G	SNP	KRT15	ENST00000254043	human	ensembl	74_37	-1	known	missense	c.1037	p.L346P	0.984	pfam_IF,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT15	HGNC	ENSG00000171346				91	0	0	32	14	30.4348
ZZEF1	0	genome.wustl.edu	37	17	3979854	3979854	+	RNA	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	3979854	3979854	C	A	SNP	ZZEF1	ENST00000574474	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZZEF1	HGNC	ENSG00000074755				17	0	0	2	11	84.6154
HCRT	0	genome.wustl.edu	37	17	40336523	40336523	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	40336523	40336523	T	C	SNP	HCRT	ENST00000293330	human	ensembl	74_37	-1	known	silent	c.45	p.L15	0.584	pfam_Orexin,pirsf_Orexin	pfam_Orexin,pirsf_Orexin,prints_Orexin	-	no_errors	HCRT	HGNC	ENSG00000161610				16	0	0	3	5	62.5
AOC4P	0	genome.wustl.edu	37	17	41020768	41020768	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	41020768	41020768	C	T	SNP	AOC4P	ENST00000562301	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	AOC4P	HGNC	ENSG00000260105				51	0	0	19	6	24
PTGES3L-AARSD1	0	genome.wustl.edu	37	17	41113254	41113254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	41113254	41113254	G	A	SNP	PTGES3L-AARSD1	ENST00000409399	human	ensembl	74_37	-1	known	missense	c.808	p.R270W	0.885	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core	pfam_tRNA_SAD,pfam_CS_dom,pfam_Ala-tRNA-synth_IIc_N,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_HSP20-like_chaperone,smart_tRNA_SAD,pfscan_CS_dom,pfscan_Ala-tRNA-synth_IIc_core	-	no_errors	PTGES3L-AARSD1	HGNC	ENSG00000108825				436	0	0	207	17	7.58929
DHX8	0	genome.wustl.edu	37	17	41570249	41570249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	41570249	41570249	G	A	SNP	DHX8	ENST00000262415	human	ensembl	74_37	+1	known	missense	c.704	p.R235Q	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596				286	0	0	69	28	28.866
DUSP3	0	genome.wustl.edu	37	17	41847137	41847137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	41847137	41847137	G	A	SNP	DUSP3	ENST00000226004	human	ensembl	74_37	-1	known	missense	c.398	p.T133M	0.995	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP3	HGNC	ENSG00000108861				94	0	0	51	4	7.27273
C17orf53	0	genome.wustl.edu	37	17	42232251	42232251	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	42232251	42232251	T	C	SNP	C17orf53	ENST00000319977	human	ensembl	74_37	+1	known	missense	c.1592	p.L531P	1.000	NULL	NULL	-	no_errors	C17orf53	HGNC	ENSG00000125319				53	0	0	27	5	15.625
SLC4A1	0	genome.wustl.edu	37	17	42334898	42334898	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	42334898	42334898	G	A	SNP	SLC4A1	ENST00000262418	human	ensembl	74_37	-1	known	silent	c.1446	p.N482	0.000	pfam_HCO3_transpt_C,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939				119	0	0	43	12	21.8182
SLC4A1	0	genome.wustl.edu	37	17	42338958	42338958	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	42338958	42338958	G	T	SNP	SLC4A1	ENST00000262418	human	ensembl	74_37	-1	known	missense	c.153	p.H51Q	0.001	NULL	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939				184	0	0	60	19	24.0506
ITGA2B	0	genome.wustl.edu	37	17	42466710	42466710	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	42466710	42466710	G	A	SNP	ITGA2B	ENST00000262407	human	ensembl	74_37	-1	known	silent	c.132	p.G44	0.999	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961				250	1	0.398406	70	33	32.0388
MAP3K14	0	genome.wustl.edu	37	17	43342571	43342571	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	43342571	43342571	G	A	SNP	MAP3K14	ENST00000344686	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	MAP3K14	HGNC	ENSG00000006062				201	0	0	38	28	42.4242
KPNB1	0	genome.wustl.edu	37	17	45754477	45754477	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	45754477	45754477	T	C	SNP	KPNB1	ENST00000290158	human	ensembl	74_37	+1	known	missense	c.2087	p.L696P	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424				110	0	0	40	13	24.5283
MRPL10	0	genome.wustl.edu	37	17	45904542	45904542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	45904542	45904542	C	T	SNP	MRPL10	ENST00000351111	human	ensembl	74_37	-1	known	missense	c.251	p.R84Q	0.609	pfam_Ribosomal_L10/acidic_P0	pfam_Ribosomal_L10/acidic_P0	-	no_errors	MRPL10	HGNC	ENSG00000159111				124	0	0	52	28	35
LRRC46	0	genome.wustl.edu	37	17	45911828	45911828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	45911828	45911828	G	A	SNP	LRRC46	ENST00000269025	human	ensembl	74_37	+1	known	missense	c.154	p.D52N	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC46	HGNC	ENSG00000141294				237	1	0.420168	60	37	38.1443
HOXB3	0	genome.wustl.edu	37	17	46628527	46628527	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	46628527	46628527	G	A	SNP	HOXB3	ENST00000311626	human	ensembl	74_37	-1	known	silent	c.465	p.G155	0.995	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093				58	0	0	15	9	37.5
B4GALNT2	0	genome.wustl.edu	37	17	47210513	47210513	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	47210513	47210513	C	A	SNP	B4GALNT2	ENST00000300404	human	ensembl	74_37	+1	known	nonsense	c.126	p.C42*	0.000	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080				18	0	0	5	4	44.4444
GNGT2	0	genome.wustl.edu	37	17	47284199	47284199	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	47284199	47284199	C	A	SNP	GNGT2	ENST00000300406	human	ensembl	74_37	-1	known	missense	c.130	p.A44S	0.821	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNGT2	HGNC	ENSG00000167083				139	0	0	68	32	32
GP1BA	0	genome.wustl.edu	37	17	4836597	4836597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	4836597	4836597	G	A	SNP	GP1BA	ENST00000329125	human	ensembl	74_37	+1	known	missense	c.698	p.R233H	0.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP1BA	HGNC	ENSG00000185245				142	0	0	50	23	31.5068
MRPL27	0	genome.wustl.edu	37	17	48445469	48445469	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	48445469	48445469	A	C	SNP	MRPL27	ENST00000225969	human	ensembl	74_37	-1	known	missense	c.431	p.L144R	1.000	NULL	pfam_Ribosomal_L27,prints_Ribosomal_L27	-	no_errors	MRPL27	HGNC	ENSG00000108826				108	0	0	42	17	28.8136
WFIKKN2	0	genome.wustl.edu	37	17	48917430	48917430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	48917430	48917430	C	T	SNP	WFIKKN2	ENST00000311378	human	ensembl	74_37	+1	known	missense	c.781	p.R261C	0.997	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Netrin_module_non-TIMP,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Ig_V-set,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN2	HGNC	ENSG00000173714				81	0	0	20	27	57.4468
SPAG9	0	genome.wustl.edu	37	17	49075879	49075879	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	49075879	49075879	G	A	SNP	SPAG9	ENST00000262013	human	ensembl	74_37	-1	known	silent	c.1764	p.S588	0.165	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294				150	0	0	64	22	25.5814
CA10	0	genome.wustl.edu	37	17	49710999	49710999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	49710999	49710999	G	A	SNP	CA10	ENST00000340813	human	ensembl	74_37	-1	known	missense	c.820	p.R274C	0.999	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA10	HGNC	ENSG00000154975				123	0	0	29	11	27.5
KIF2B	0	genome.wustl.edu	37	17	51900843	51900843	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	51900843	51900843	T	C	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.449	p.L150P	0.885	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				186	0	0	62	26	29.5455
KIF2B	0	genome.wustl.edu	37	17	51902309	51902309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	51902309	51902309	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.1915	p.A639T	0.988	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				114	0	0	44	25	36.2319
SCPEP1	0	genome.wustl.edu	37	17	55065125	55065125	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	55065125	55065125	G	C	SNP	SCPEP1	ENST00000262288	human	ensembl	74_37	+1	known	missense	c.385	p.G129R	0.000	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	SCPEP1	HGNC	ENSG00000121064				218	0	0	132	7	5.03597
EPX	0	genome.wustl.edu	37	17	56274532	56274532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	56274532	56274532	G	A	SNP	EPX	ENST00000225371	human	ensembl	74_37	+1	known	missense	c.1034	p.G345D	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053				171	0	0	65	20	23.5294
MTMR4	0	genome.wustl.edu	37	17	56573626	56573626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	56573626	56573626	C	T	SNP	MTMR4	ENST00000323456	human	ensembl	74_37	-1	known	missense	c.1877	p.R626H	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389				86	0	0	39	20	33.8983
TRIM37	0	genome.wustl.edu	37	17	57181748	57181748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	57181748	57181748	G	A	SNP	TRIM37	ENST00000262294	human	ensembl	74_37	-1	known	missense	c.29	p.A10V	1.000	NULL	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC	ENSG00000108395				149	0	0	57	26	31.3253
CLTC	0	genome.wustl.edu	37	17	57761246	57761246	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	57761246	57761246	T	G	SNP	CLTC	ENST00000269122	human	ensembl	74_37	+1	known	missense	c.4334	p.L1445R	1.000	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367				53	0	0	32	22	40.7407
HEATR6	0	genome.wustl.edu	37	17	58153591	58153591	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	58153591	58153591	C	T	SNP	HEATR6	ENST00000184956	human	ensembl	74_37	-1	known	missense	c.227	p.S76N	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097				61	0	0	15	12	44.4444
BCAS3	0	genome.wustl.edu	37	17	59118211	59118211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	59118211	59118211	G	A	SNP	BCAS3	ENST00000390652	human	ensembl	74_37	+1	known	missense	c.2032	p.A678T	1.000	pfam_BCAS3	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376				287	0	0	98	42	30
INTS2	0	genome.wustl.edu	37	17	59972690	59972690	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	59972690	59972690	T	A	SNP	INTS2	ENST00000444766	human	ensembl	74_37	-1	known	missense	c.1573	p.I525F	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506				38	0	0	19	7	26.9231
SCN4A	0	genome.wustl.edu	37	17	62019244	62019244	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	62019244	62019244	C	A	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.4398	p.K1466N	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				97	0	0	31	10	24.3902
CEP95	0	genome.wustl.edu	37	17	62518978	62518978	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	62518978	62518978	G	A	SNP	CEP95	ENST00000556440	human	ensembl	74_37	+1	known	missense	c.874	p.V292I	0.000	NULL	superfamily_CH-domain	-	no_errors	CEP95	HGNC	ENSG00000258890				43	0	0	14	8	36.3636
CEP95	0	genome.wustl.edu	37	17	62528989	62528989	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	62528989	62528989	A	G	SNP	CEP95	ENST00000556440	human	ensembl	74_37	+1	known	missense	c.1705	p.M569V	0.984	NULL	superfamily_CH-domain	-	no_errors	CEP95	HGNC	ENSG00000258890				50	0	0	21	8	27.5862
SMURF2	0	genome.wustl.edu	37	17	62589575	62589575	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	62589575	62589575	C	T	SNP	SMURF2	ENST00000262435	human	ensembl	74_37	-1	known	missense	c.317	p.R106H	1.000	superfamily_C2_dom,smart_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF2	HGNC	ENSG00000108854				127	0	0	47	22	31.8841
RGS9	0	genome.wustl.edu	37	17	63223455	63223455	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	63223455	63223455	A	G	SNP	RGS9	ENST00000262406	human	ensembl	74_37	+1	known	missense	c.1955	p.D652G	0.980	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS9	HGNC	ENSG00000108370				109	0	0	28	16	36.3636
BPTF	0	genome.wustl.edu	37	17	65919019	65919019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	65919019	65919019	C	T	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.5999	p.T2000M	0.998	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				165	0	0	60	26	30.2326
ABCA8	0	genome.wustl.edu	37	17	66925324	66925324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	66925324	66925324	C	T	SNP	ABCA8	ENST00000430352	human	ensembl	74_37	-1	known	missense	c.991	p.G331S	0.041	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338				108	0	0	38	11	22.449
C17orf77	0	genome.wustl.edu	37	17	72588248	72588248	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	72588248	72588248	G	A	SNP	C17orf77	ENST00000328023	human	ensembl	74_37	+1	known	silent	c.63	p.L21	0.000	NULL	NULL	-	no_errors	C17orf77	HGNC	ENSG00000182352				164	0	0	56	23	29.1139
TNK1	0	genome.wustl.edu	37	17	7287072	7287072	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	7287072	7287072	G	A	SNP	TNK1	ENST00000576812	human	ensembl	74_37	+1	known	silent	c.471	p.P157	0.001	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TNK1	HGNC	ENSG00000174292				33	0	0	9	3	25
HID1	0	genome.wustl.edu	37	17	72948429	72948429	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	72948429	72948429	C	T	SNP	HID1	ENST00000425042	human	ensembl	74_37	-1	known	silent	c.2079	p.P693	0.783	NULL	pfam_Dymeclin	-	no_errors	HID1	HGNC	ENSG00000167861				69	0	0	20	6	23.0769
GGA3	0	genome.wustl.edu	37	17	73237030	73237030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	73237030	73237030	C	T	SNP	GGA3	ENST00000245541	human	ensembl	74_37	-1	known	missense	c.1055	p.G352D	0.742	NULL	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA3	HGNC	ENSG00000125447				100	0	0	45	15	25
ZBTB4	0	genome.wustl.edu	37	17	7366256	7366256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	7366256	7366256	G	A	SNP	ZBTB4	ENST00000311403	human	ensembl	74_37	-1	known	missense	c.2045	p.A682V	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282				225	0	0	46	56	54.902
SRP68	0	genome.wustl.edu	37	17	74068513	74068513	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	74068513	74068513	A	G	SNP	SRP68	ENST00000307877	human	ensembl	74_37	-1	known	silent	c.60	p.G20	0.001	NULL	NULL	-	no_errors	SRP68	HGNC	ENSG00000167881				118	0	0	45	16	26.2295
TP53	0	genome.wustl.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	7578403	7578403	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.527	p.C176Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				81	0	0	20	30	60
DNAH17	0	genome.wustl.edu	37	17	76526469	76526469	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	76526469	76526469	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	missense	c.3240	p.W1080C	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				67	0	0	29	9	23.6842
DNAH2	0	genome.wustl.edu	37	17	7735951	7735951	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	7735951	7735951	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.12781	p.V4261M	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				289	0	0	49	95	65.9722
CBX2	0	genome.wustl.edu	37	17	77758039	77758039	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	77758039	77758039	G	A	SNP	CBX2	ENST00000310942	human	ensembl	74_37	+1	known	missense	c.797	p.S266N	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX2	HGNC	ENSG00000173894				109	0	0	29	19	39.5833
RNF213	0	genome.wustl.edu	37	17	78327386	78327386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	78327386	78327386	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.10498	p.A3500T	0.053	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				69	0	0	16	11	40.7407
AZI1	0	genome.wustl.edu	37	17	79164804	79164804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	79164804	79164804	G	A	SNP	AZI1	ENST00000269392	human	ensembl	74_37	-1	known	missense	c.2855	p.S952L	0.000	superfamily_t-SNARE	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577				129	0	0	31	19	38
C17orf70	0	genome.wustl.edu	37	17	79512780	79512780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	79512780	79512780	C	T	SNP	C17orf70	ENST00000327787	human	ensembl	74_37	-1	known	missense	c.2302	p.V768I	0.000	NULL	NULL	-	no_errors	C17orf70	HGNC	ENSG00000185504				51	0	0	12	7	36.8421
C17orf70	0	genome.wustl.edu	37	17	79517945	79517945	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	79517945	79517945	T	C	SNP	C17orf70	ENST00000327787	human	ensembl	74_37	-1	known	missense	c.575	p.H192R	0.001	NULL	NULL	-	no_errors	C17orf70	HGNC	ENSG00000185504				35	0	0	15	5	25
LRRC45	0	genome.wustl.edu	37	17	79987011	79987011	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	79987011	79987011	A	G	SNP	LRRC45	ENST00000306688	human	ensembl	74_37	+1	known	missense	c.1351	p.M451V	0.997	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC45	HGNC	ENSG00000169683				57	0	0	9	6	40
FASN	0	genome.wustl.edu	37	17	80039054	80039054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	80039054	80039054	G	A	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	missense	c.6581	p.A2194V	0.024	NULL	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				13	0	0	6	4	40
NARF	0	genome.wustl.edu	37	17	80442718	80442718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	80442718	80442718	C	T	SNP	NARF	ENST00000309794	human	ensembl	74_37	+1	known	missense	c.863	p.T288M	0.000	pfam_Fe_hydrogenase_lsu_C,superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARF	HGNC	ENSG00000141562				149	0	0	45	23	33.8235
TBCD	0	genome.wustl.edu	37	17	80763856	80763856	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	80763856	80763856	C	T	SNP	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	silent	c.1056	p.D352	0.797	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556				80	0	0	23	17	42.5
MYH10	0	genome.wustl.edu	37	17	8383817	8383817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	8383817	8383817	C	T	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.5261	p.R1754H	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				26	0	0	4	19	82.6087
WDR16	0	genome.wustl.edu	37	17	9503394	9503394	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	9503394	9503394	A	G	SNP	WDR16	ENST00000299764	human	ensembl	74_37	+1	known	missense	c.677	p.D226G	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR16	HGNC	ENSG00000166596				183	0	0	45	74	62.1849
NAPG	0	genome.wustl.edu	37	18	10539823	10539823	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	10539823	10539823	A	G	SNP	NAPG	ENST00000322897	human	ensembl	74_37	+1	known	missense	c.323	p.N108S	1.000	NULL	NULL	-	no_errors	NAPG	HGNC	ENSG00000134265				166	0	0	45	18	28.5714
GNAL	0	genome.wustl.edu	37	18	11868561	11868561	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	11868561	11868561	C	T	SNP	GNAL	ENST00000334049	human	ensembl	74_37	+1	known	silent	c.930	p.Y310	0.676	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_S	-	no_errors	GNAL	HGNC	ENSG00000141404				195	0	0	70	50	41.6667
THOC1	0	genome.wustl.edu	37	18	224147	224147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	224147	224147	C	T	SNP	THOC1	ENST00000261600	human	ensembl	74_37	-1	known	missense	c.1241	p.R414Q	0.900	pfam_THO_THOC1	pfam_THO_THOC1,pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	-	no_errors	THOC1	HGNC	ENSG00000079134				35	0	0	6	3	33.3333
GAREM	0	genome.wustl.edu	37	18	29867407	29867407	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	29867407	29867407	G	A	SNP	GAREM	ENST00000269209	human	ensembl	74_37	-1	known	nonsense	c.1153	p.R385*	1.000	NULL	superfamily_SAM/pointed	-	no_errors	GAREM	HGNC	ENSG00000141441				103	0	0	52	28	35
CCDC178	0	genome.wustl.edu	37	18	30803107	30803107	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	30803107	30803107	T	C	SNP	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	missense	c.1895	p.K632R	0.000	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				44	0	0	30	12	28.5714
ASXL3	0	genome.wustl.edu	37	18	31263451	31263451	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	31263451	31263451	A	G	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	silent	c.798	p.L266	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				47	0	0	18	7	28
NOL4	0	genome.wustl.edu	37	18	31673513	31673513	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	31673513	31673513	G	C	SNP	NOL4	ENST00000261592	human	ensembl	74_37	-1	known	missense	c.688	p.R230G	0.997	NULL	NULL	-	no_errors	NOL4	HGNC	ENSG00000101746				101	0	0	50	21	29.5775
ZNF24	0	genome.wustl.edu	37	18	32917733	32917733	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	32917733	32917733	A	G	SNP	ZNF24	ENST00000261332	human	ensembl	74_37	-1	known	silent	c.570	p.D190	1.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF24	HGNC	ENSG00000172466				156	0	0	77	17	18.0851
COLEC12	0	genome.wustl.edu	37	18	335079	335079	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	335079	335079	G	A	SNP	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	silent	c.1479	p.P493	0.903	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				119	0	0	33	20	37.7358
DLGAP1	0	genome.wustl.edu	37	18	3879345	3879345	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	3879345	3879345	T	C	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	missense	c.724	p.T242A	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579				147	1	0.675676	66	19	22.3529
SETBP1	0	genome.wustl.edu	37	18	42531516	42531516	+	Silent	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	42531516	42531516	C	A	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	silent	c.2211	p.P737	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				95	0	0	16	14	46.6667
RNF165	0	genome.wustl.edu	37	18	44013421	44013421	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	44013421	44013421	G	C	SNP	RNF165	ENST00000269439	human	ensembl	74_37	+1	known	missense	c.330	p.Q110H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF165	HGNC	ENSG00000141622				99	0	0	25	10	28.5714
ST8SIA5	0	genome.wustl.edu	37	18	44260371	44260371	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	44260371	44260371	G	A	SNP	ST8SIA5	ENST00000315087	human	ensembl	74_37	-1	known	silent	c.765	p.T255	0.847	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA5	HGNC	ENSG00000101638				24	0	0	11	8	42.1053
PIAS2	0	genome.wustl.edu	37	18	44444187	44444187	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	44444187	44444187	T	C	SNP	PIAS2	ENST00000585916	human	ensembl	74_37	-1	known	missense	c.524	p.Q175R	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS2	HGNC	ENSG00000078043				71	0	0	34	11	24.4444
ZBTB7C	0	genome.wustl.edu	37	18	45567053	45567053	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	45567053	45567053	A	G	SNP	ZBTB7C	ENST00000332053	human	ensembl	74_37	-1	known	silent	c.426	p.D142	0.057	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828				60	0	0	25	7	21.875
CXXC1	0	genome.wustl.edu	37	18	47810865	47810865	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	47810865	47810865	C	A	SNP	CXXC1	ENST00000412036	human	ensembl	74_37	-1	known	missense	c.1100	p.R367M	0.783	NULL	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832				250	0	0	64	26	28.8889
DCC	0	genome.wustl.edu	37	18	50741932	50741932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	50741932	50741932	C	T	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.1876	p.P626S	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				158	0	0	63	30	32.2581
DCC	0	genome.wustl.edu	37	18	50976949	50976949	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	50976949	50976949	G	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	silent	c.3309	p.V1103	0.998	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				91	0	0	34	17	33.3333
MBD2	0	genome.wustl.edu	37	18	51690978	51690978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	51690978	51690978	C	T	SNP	MBD2	ENST00000256429	human	ensembl	74_37	-1	known	missense	c.1024	p.A342T	0.934	NULL	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD2	HGNC	ENSG00000134046				133	0	0	59	10	14.4928
CCBE1	0	genome.wustl.edu	37	18	57106992	57106992	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	57106992	57106992	G	A	SNP	CCBE1	ENST00000439986	human	ensembl	74_37	-1	known	nonsense	c.832	p.Q278*	0.991	pfam_Collagen	pfam_Collagen,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	CCBE1	HGNC	ENSG00000183287				88	0	0	44	23	34.3284
CDH20	0	genome.wustl.edu	37	18	59221521	59221521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	59221521	59221521	G	A	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.1999	p.D667N	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				312	0	0	89	34	27.6423
BCL2	0	genome.wustl.edu	37	18	60985607	60985607	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	60985607	60985607	C	T	SNP	BCL2	ENST00000333681	human	ensembl	74_37	-1	known	missense	c.293	p.R98H	1.000	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Apop_reg_Bcl2,prints_Apop_reg_BclX,tigrfam_Bcl2/BclX	pfam_Blc2_fam,pfam_Bcl2_BH4,smart_Bcl2_BH4,pfscan_Bcl2-like,pfscan_Bcl2_BH4,prints_Apop_reg_Bcl2,prints_Blc2_fam,prints_Apop_reg_BclX,tigrfam_Bcl2/BclX	-	no_errors	BCL2	HGNC	ENSG00000171791				92	0	0	29	9	23.6842
CCDC102B	0	genome.wustl.edu	37	18	66564824	66564824	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	66564824	66564824	T	C	SNP	CCDC102B	ENST00000358653	human	ensembl	74_37	+1	known	nonstop	c.1273	p.*425Q	0.000	NULL	NULL	-	no_errors	CCDC102B	HGNC	ENSG00000150636				31	0	0	18	17	48.5714
LRRC30	0	genome.wustl.edu	37	18	7231375	7231375	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	7231375	7231375	A	G	SNP	LRRC30	ENST00000383467	human	ensembl	74_37	+1	known	missense	c.239	p.H80R	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC30	HGNC	ENSG00000206422				75	0	0	42	19	31.1475
ZNF407	0	genome.wustl.edu	37	18	72345425	72345425	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	72345425	72345425	C	T	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.2450	p.A817V	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				272	0	0	99	34	25.5639
ZNF407	0	genome.wustl.edu	37	18	72346151	72346151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	72346151	72346151	G	A	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.3176	p.R1059H	0.902	smart_Znf_C2H2-like,smart_Znf_U1	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				206	1	0.483092	60	29	32.5843
CTDP1	0	genome.wustl.edu	37	18	77475105	77475105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	77475105	77475105	G	A	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	missense	c.1645	p.A549T	0.287	NULL	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069				49	0	0	12	3	20
KCNG2	0	genome.wustl.edu	37	18	77659162	77659162	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	77659162	77659162	G	A	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	silent	c.747	p.A249	0.714	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				41	0	0	8	7	46.6667
SOGA2	0	genome.wustl.edu	37	18	8796287	8796287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	8796287	8796287	G	A	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	missense	c.2068	p.A690T	0.998	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				176	0	0	53	29	35.3659
SOGA2	0	genome.wustl.edu	37	18	8798182	8798182	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	8798182	8798182	C	T	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	nonsense	c.2329	p.R777*	0.000	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				117	0	0	38	13	25.4902
SOGA2	0	genome.wustl.edu	37	18	8825987	8825987	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	8825987	8825987	G	A	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	silent	c.4479	p.S1493	0.004	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				73	0	0	14	11	44
ABCA7	0	genome.wustl.edu	37	19	1047260	1047260	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	1047260	1047260	C	T	SNP	ABCA7	ENST00000263094	human	ensembl	74_37	+1	known	silent	c.1950	p.F650	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687				33	0	0	10	6	37.5
TYK2	0	genome.wustl.edu	37	19	10476480	10476480	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	10476480	10476480	G	T	SNP	TYK2	ENST00000264818	human	ensembl	74_37	-1	known	missense	c.724	p.L242M	0.309	superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397				49	0	0	13	5	27.7778
AP1M2	0	genome.wustl.edu	37	19	10694657	10694657	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	10694657	10694657	G	A	SNP	AP1M2	ENST00000590923	human	ensembl	74_37	-1	known	silent	c.132	p.G44	0.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP1M2	HGNC	ENSG00000129354				19	0	0	9	2	18.1818
HMHA1	0	genome.wustl.edu	37	19	1080463	1080463	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	1080463	1080463	C	T	SNP	HMHA1	ENST00000313093	human	ensembl	74_37	+1	known	missense	c.1829	p.A610V	0.852	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448				164	0	0	45	23	33.8235
ZNF823	0	genome.wustl.edu	37	19	11833336	11833336	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	11833336	11833336	C	A	SNP	ZNF823	ENST00000341191	human	ensembl	74_37	-1	known	missense	c.1013	p.G338V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF823	HGNC	ENSG00000197933				182	0	0	106	32	23.1884
MAN2B1	0	genome.wustl.edu	37	19	12759026	12759026	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	12759026	12759026	C	G	SNP	MAN2B1	ENST00000456935	human	ensembl	74_37	-1	known	missense	c.2627	p.G876A	0.001	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774				13	0	0	2	5	71.4286
TNPO2	0	genome.wustl.edu	37	19	12817053	12817053	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	12817053	12817053	A	G	SNP	TNPO2	ENST00000425528	human	ensembl	74_37	-1	known	missense	c.1625	p.I542T	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	TNPO2	HGNC	ENSG00000105576				70	0	0	17	7	29.1667
NACC1	0	genome.wustl.edu	37	19	13248374	13248374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	13248374	13248374	C	T	SNP	NACC1	ENST00000292431	human	ensembl	74_37	+1	known	missense	c.1309	p.L437F	1.000	pfam_BEN_domain	pfam_BTB_POZ,pfam_BEN_domain,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	NACC1	HGNC	ENSG00000160877				10	0	0	3	2	40
CACNA1A	0	genome.wustl.edu	37	19	13418632	13418632	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	13418632	13418632	G	A	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	silent	c.1950	p.F650	0.409	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				187	0	0	58	22	27.5
CACNA1A	0	genome.wustl.edu	37	19	13616881	13616881	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	13616881	13616881	G	A	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.158	p.A53V	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				73	0	0	17	7	29.1667
CC2D1A	0	genome.wustl.edu	37	19	14028985	14028985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	14028985	14028985	C	T	SNP	CC2D1A	ENST00000318003	human	ensembl	74_37	+1	known	missense	c.851	p.A284V	0.132	smart_DM14	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1A	HGNC	ENSG00000132024				18	0	0	2	2	50
ZNF333	0	genome.wustl.edu	37	19	14830032	14830032	+	Silent	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	14830032	14830032	C	A	SNP	ZNF333	ENST00000292530	human	ensembl	74_37	+1	known	silent	c.1893	p.S631	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961				185	0	0	110	9	7.56303
EMR2	0	genome.wustl.edu	37	19	14863142	14863142	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	14863142	14863142	T	G	SNP	EMR2	ENST00000315576	human	ensembl	74_37	-1	known	missense	c.1787	p.K596T	0.675	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR2	HGNC	ENSG00000127507				72	0	0	39	11	22
OR1I1	0	genome.wustl.edu	37	19	15198171	15198171	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	15198171	15198171	A	G	SNP	OR1I1	ENST00000209540	human	ensembl	74_37	+1	known	missense	c.295	p.T99A	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1I1	HGNC	ENSG00000094661				105	0	0	33	16	32.6531
NOTCH3	0	genome.wustl.edu	37	19	15276888	15276888	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	15276888	15276888	G	A	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	silent	c.5377	p.L1793	0.967	pirsf_Notch,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				107	0	0	32	11	25.5814
MEX3D	0	genome.wustl.edu	37	19	1555600	1555600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	1555600	1555600	G	A	SNP	MEX3D	ENST00000388824	human	ensembl	74_37	-1	known	missense	c.1918	p.R640C	1.000	pfscan_Znf_RING	pfam_KH_dom_type_1,smart_KH_dom,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3D	HGNC	ENSG00000181588				17	0	0	6	6	50
CYP4F2	0	genome.wustl.edu	37	19	16001193	16001193	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	16001193	16001193	A	G	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	silent	c.576	p.F192	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115				210	0	0	80	40	33.3333
CHERP	0	genome.wustl.edu	37	19	16641614	16641614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	16641614	16641614	G	A	SNP	CHERP	ENST00000546361	human	ensembl	74_37	-1	known	missense	c.752	p.A251V	0.998	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872				114	0	0	26	17	39.5349
MED26	0	genome.wustl.edu	37	19	16687637	16687637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	16687637	16687637	G	A	SNP	MED26	ENST00000263390	human	ensembl	74_37	-1	known	missense	c.1004	p.A335V	0.001	NULL	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	MED26	HGNC	ENSG00000105085				38	0	0	13	4	23.5294
F2RL3	0	genome.wustl.edu	37	19	17001347	17001347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	17001347	17001347	G	A	SNP	F2RL3	ENST00000248076	human	ensembl	74_37	+1	known	missense	c.1073	p.R358Q	0.003	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prot_act_rcpt_4,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	F2RL3	HGNC	ENSG00000127533				37	0	0	10	3	23.0769
NR2F6	0	genome.wustl.edu	37	19	17343175	17343175	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	17343175	17343175	C	T	SNP	NR2F6	ENST00000291442	human	ensembl	74_37	-1	known	missense	c.1201	p.G401S	0.964	prints_COUP_TF	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR2F6	HGNC	ENSG00000160113				118	0	0	38	15	28.3019
ANO8	0	genome.wustl.edu	37	19	17435799	17435799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	17435799	17435799	G	A	SNP	ANO8	ENST00000159087	human	ensembl	74_37	-1	known	missense	c.3058	p.R1020C	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855				381	1	0.26178	115	52	31.1377
B3GNT3	0	genome.wustl.edu	37	19	17919075	17919075	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	17919075	17919075	G	A	SNP	B3GNT3	ENST00000318683	human	ensembl	74_37	+1	known	silent	c.459	p.P153	0.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT3	HGNC	ENSG00000179913				75	0	0	24	16	40
JAK3	0	genome.wustl.edu	37	19	17955109	17955109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	17955109	17955109	G	A	SNP	JAK3	ENST00000458235	human	ensembl	74_37	-1	known	missense	c.118	p.R40C	0.011	smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639				39	0	0	6	6	50
PDE4C	0	genome.wustl.edu	37	19	18321960	18321960	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	18321960	18321960	G	A	SNP	PDE4C	ENST00000355502	human	ensembl	74_37	-1	known	nonsense	c.1918	p.R640*	0.998	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650				178	1	0.558659	32	21	39.6226
ADAT3	0	genome.wustl.edu	37	19	1912977	1912977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	1912977	1912977	G	A	SNP	ADAT3	ENST00000329478	human	ensembl	74_37	+1	known	missense	c.931	p.A311T	1.000	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	ADAT3	HGNC	ENSG00000213638				134	0	0	47	11	18.9655
NCAN	0	genome.wustl.edu	37	19	19351410	19351410	+	Splice_Site	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	19351410	19351410	A	G	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	splice_site	c.3410-2	e11-2	1.000	-	-	-	no_errors	NCAN	HGNC	ENSG00000130287				148	0	0	39	14	26.4151
TSSK6	0	genome.wustl.edu	37	19	19626094	19626094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	19626094	19626094	G	A	SNP	TSSK6	ENST00000360913	human	ensembl	74_37	-1	known	missense	c.143	p.A48V	0.985	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TSSK6	HGNC	ENSG00000178093				103	0	0	35	17	32.6923
ZNF714	0	genome.wustl.edu	37	19	21300002	21300002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	21300002	21300002	G	A	SNP	ZNF714	ENST00000596143	human	ensembl	74_37	+1	known	missense	c.532	p.D178N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF714	HGNC	ENSG00000160352				164	0	0	54	26	32.5
ZNF714	0	genome.wustl.edu	37	19	21300018	21300018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	21300018	21300018	G	A	SNP	ZNF714	ENST00000596143	human	ensembl	74_37	+1	known	missense	c.548	p.R183Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF714	HGNC	ENSG00000160352				164	0	0	55	25	31.25
ZNF738	0	genome.wustl.edu	37	19	21558670	21558670	+	Splice_Site	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	21558670	21558670	G	A	SNP	ZNF738	ENST00000597492	human	ensembl	74_37	+1	known	splice_site	c.135-1	e4-1	0.476	-	-	-	no_errors	ZNF738	HGNC	ENSG00000172687				129	0	0	42	27	39.1304
ZNF208	0	genome.wustl.edu	37	19	22155306	22155306	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	22155306	22155306	T	C	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.2530	p.K844E	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				106	0	0	54	22	28.9474
ZNF257	0	genome.wustl.edu	37	19	22271811	22271811	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	22271811	22271811	A	T	SNP	ZNF257	ENST00000594947	human	ensembl	74_37	+1	known	missense	c.1259	p.Q420L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134				60	0	0	55	4	6.77966
ZNF554	0	genome.wustl.edu	37	19	2827741	2827741	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	2827741	2827741	G	T	SNP	ZNF554	ENST00000317243	human	ensembl	74_37	+1	known	nonsense	c.253	p.E85*	0.941	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF554	HGNC	ENSG00000172006				90	0	0	34	12	26.087
GPATCH1	0	genome.wustl.edu	37	19	33600752	33600752	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	33600752	33600752	G	A	SNP	GPATCH1	ENST00000170564	human	ensembl	74_37	+1	known	missense	c.1415	p.S472N	0.741	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650				122	0	0	48	15	23.8095
DMKN	0	genome.wustl.edu	37	19	36004029	36004029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	36004029	36004029	C	T	SNP	DMKN	ENST00000339686	human	ensembl	74_37	-1	known	missense	c.349	p.A117T	0.846	NULL	NULL	-	no_errors	DMKN	HGNC	ENSG00000161249				94	0	0	31	19	38
TMEM147	0	genome.wustl.edu	37	19	36038038	36038038	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	36038038	36038038	G	A	SNP	TMEM147	ENST00000222284	human	ensembl	74_37	+1	known	silent	c.447	p.A149	0.056	pfam_DUF2053_membrane	pfam_DUF2053_membrane	-	no_errors	TMEM147	HGNC	ENSG00000105677				142	0	0	53	23	30.2632
RBM42	0	genome.wustl.edu	37	19	36128234	36128234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	36128234	36128234	G	A	SNP	RBM42	ENST00000262633	human	ensembl	74_37	+1	known	missense	c.1310	p.R437H	0.984	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254				139	0	0	38	15	28.3019
ZBTB32	0	genome.wustl.edu	37	19	36206345	36206345	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	36206345	36206345	G	A	SNP	ZBTB32	ENST00000262630	human	ensembl	74_37	+1	known	missense	c.817	p.G273S	0.997	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB32	HGNC	ENSG00000011590				178	0	0	50	23	31.5068
CACTIN	0	genome.wustl.edu	37	19	3623901	3623901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	3623901	3623901	G	A	SNP	CACTIN	ENST00000221899	human	ensembl	74_37	-1	known	missense	c.223	p.R75W	1.000	NULL	pfam_Cactin_dom,pfam_Cactin_C	-	no_errors	CACTIN	HGNC	ENSG00000105298				56	0	0	13	13	50
ARHGAP33	0	genome.wustl.edu	37	19	36279117	36279117	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	36279117	36279117	G	A	SNP	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	missense	c.3650	p.R1217H	0.002	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777				94	0	0	26	21	44.6809
NPHS1	0	genome.wustl.edu	37	19	36342240	36342240	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	36342240	36342240	C	T	SNP	NPHS1	ENST00000378910	human	ensembl	74_37	-1	known	silent	c.321	p.A107	0.099	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NPHS1	HGNC	ENSG00000161270				46	0	0	17	10	37.037
ZFP14	0	genome.wustl.edu	37	19	36853090	36853090	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	36853090	36853090	C	T	SNP	ZFP14	ENST00000270001	human	ensembl	74_37	-1	known	nonsense	c.60	p.W20*	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP14	HGNC	ENSG00000142065				141	0	0	38	25	39.6825
MATK	0	genome.wustl.edu	37	19	3784221	3784221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	3784221	3784221	C	T	SNP	MATK	ENST00000395045	human	ensembl	74_37	-1	known	missense	c.266	p.R89H	0.907	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	MATK	HGNC	ENSG00000007264				124	0	0	32	11	25.5814
ZNF569	0	genome.wustl.edu	37	19	37903985	37903985	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	37903985	37903985	A	G	SNP	ZNF569	ENST00000316950	human	ensembl	74_37	-1	known	silent	c.1575	p.N525	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437				165	0	0	86	32	27.1186
RYR1	0	genome.wustl.edu	37	19	39019237	39019237	+	Splice_Site	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	39019237	39019237	A	G	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	splice_site	c.10938-2	e75-2	1.000	-	-	-	no_errors	RYR1	HGNC	ENSG00000196218				69	0	0	21	11	34.375
ACTN4	0	genome.wustl.edu	37	19	39214943	39214943	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	39214943	39214943	C	T	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	silent	c.1839	p.T613	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN4	HGNC	ENSG00000130402				80	0	0	21	6	22.2222
DYRK1B	0	genome.wustl.edu	37	19	40316498	40316498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	40316498	40316498	C	T	SNP	DYRK1B	ENST00000323039	human	ensembl	74_37	-1	known	missense	c.1747	p.A583T	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1B	HGNC	ENSG00000105204				63	0	0	18	6	25
FCGBP	0	genome.wustl.edu	37	19	40376631	40376631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	40376631	40376631	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.11791	p.P3931S	1.000	pfam_Unchr_dom_Cys-rich,superfamily_TIL_dom,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				195	0	0	66	18	21.4286
MAP3K10	0	genome.wustl.edu	37	19	40718828	40718828	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	40718828	40718828	C	T	SNP	MAP3K10	ENST00000253055	human	ensembl	74_37	+1	known	nonsense	c.1669	p.R557*	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758				78	0	0	17	9	34.6154
MAP2K2	0	genome.wustl.edu	37	19	4117504	4117504	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	4117504	4117504	G	A	SNP	MAP2K2	ENST00000262948	human	ensembl	74_37	-1	known	silent	c.216	p.F72	0.923	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K2	HGNC	ENSG00000126934				159	0	0	50	28	35.8974
CYP2B7P1	0	genome.wustl.edu	37	19	41442381	41442381	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	41442381	41442381	G	A	SNP	CYP2B7P1	ENST00000599198	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	CYP2B7P1	HGNC	ENSG00000256612				39	0	0	19	4	17.3913
CREB3L3	0	genome.wustl.edu	37	19	4164608	4164608	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	4164608	4164608	A	G	SNP	CREB3L3	ENST00000078445	human	ensembl	74_37	+1	known	missense	c.685	p.T229A	0.965	superfamily_TF_DNA-bd	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566				110	0	0	31	16	34.0426
ARHGEF1	0	genome.wustl.edu	37	19	42398310	42398310	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	42398310	42398310	C	T	SNP	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	silent	c.720	p.Y240	1.000	pfam_RGS-like_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928				50	0	0	15	2	11.7647
ARHGEF1	0	genome.wustl.edu	37	19	42399469	42399469	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	42399469	42399469	T	C	SNP	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	missense	c.970	p.S324P	0.956	NULL	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928				215	0	0	58	26	30.9524
DEDD2	0	genome.wustl.edu	37	19	42713928	42713928	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	42713928	42713928	C	T	SNP	DEDD2	ENST00000595337	human	ensembl	74_37	-1	known	silent	c.513	p.R171	1.000	NULL	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	-	no_errors	DEDD2	HGNC	ENSG00000160570				130	0	0	35	14	28.5714
CIC	0	genome.wustl.edu	37	19	42796288	42796288	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	42796288	42796288	G	A	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	silent	c.2937	p.P979	0.997	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				142	0	0	39	13	25
CEACAM8	0	genome.wustl.edu	37	19	43093693	43093693	+	Silent	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	43093693	43093693	T	G	SNP	CEACAM8	ENST00000244336	human	ensembl	74_37	-1	known	silent	c.619	p.R207	0.813	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM8	HGNC	ENSG00000124469				397	0	0	142	54	27.551
PSG2	0	genome.wustl.edu	37	19	43575989	43575989	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	43575989	43575989	T	C	SNP	PSG2	ENST00000406487	human	ensembl	74_37	-1	known	missense	c.827	p.N276S	0.002	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG2	HGNC	ENSG00000242221				472	0	0	272	19	6.52921
CHAF1A	0	genome.wustl.edu	37	19	4422729	4422729	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	4422729	4422729	A	C	SNP	CHAF1A	ENST00000301280	human	ensembl	74_37	+1	known	missense	c.1184	p.K395T	1.000	NULL	pfam_CAF1A	-	no_errors	CHAF1A	HGNC	ENSG00000167670				55	0	0	14	4	22.2222
ZNF230	0	genome.wustl.edu	37	19	44515185	44515185	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	44515185	44515185	G	A	SNP	ZNF230	ENST00000429154	human	ensembl	74_37	+1	known	missense	c.994	p.G332R	0.986	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF230	HGNC	ENSG00000159882				273	0	0	148	58	28.1553
ZNF230	0	genome.wustl.edu	37	19	44515438	44515438	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	44515438	44515438	G	A	SNP	ZNF230	ENST00000429154	human	ensembl	74_37	+1	known	missense	c.1247	p.R416Q	0.972	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF230	HGNC	ENSG00000159882				263	0	0	92	40	30.303
CEACAM20	0	genome.wustl.edu	37	19	45028150	45028150	+	RNA	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	45028150	45028150	A	G	SNP	CEACAM20	ENST00000316962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	CEACAM20	HGNC	ENSG00000176395				27	0	0	11	3	21.4286
PRKD2	0	genome.wustl.edu	37	19	47207633	47207633	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	47207633	47207633	C	T	SNP	PRKD2	ENST00000291281	human	ensembl	74_37	-1	known	missense	c.682	p.E228K	0.293	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD2	HGNC	ENSG00000105287				188	0	0	50	31	38.2716
TICAM1	0	genome.wustl.edu	37	19	4817366	4817366	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	4817366	4817366	T	C	SNP	TICAM1	ENST00000248244	human	ensembl	74_37	-1	known	missense	c.1024	p.T342A	0.000	pirsf_TICAM1	superfamily_TIR_dom,pirsf_TICAM1	-	no_errors	TICAM1	HGNC	ENSG00000127666				137	1	0.724638	47	15	24.1935
GLTSCR1	0	genome.wustl.edu	37	19	48185372	48185372	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	48185372	48185372	C	T	SNP	GLTSCR1	ENST00000396720	human	ensembl	74_37	+1	known	missense	c.2246	p.A749V	0.998	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169				12	0	0	3	3	50
NUP62	0	genome.wustl.edu	37	19	50411973	50411973	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	50411973	50411973	C	T	SNP	NUP62	ENST00000352066	human	ensembl	74_37	-1	known	silent	c.1092	p.T364	0.893	pfam_Nucleoporin_NSP1_C	pfam_Nucleoporin_NSP1_C	-	no_errors	NUP62	HGNC	ENSG00000213024				235	0	0	82	25	23.3645
ZNF473	0	genome.wustl.edu	37	19	50542498	50542498	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	50542498	50542498	G	A	SNP	ZNF473	ENST00000270617	human	ensembl	74_37	+1	known	silent	c.90	p.T30	0.284	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528				210	0	0	76	27	26.2136
MYH14	0	genome.wustl.edu	37	19	50812898	50812898	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	50812898	50812898	C	T	SNP	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	missense	c.5962	p.R1988C	0.999	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357				36	0	0	10	3	23.0769
KDM4B	0	genome.wustl.edu	37	19	5110825	5110825	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	5110825	5110825	C	T	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.1111	p.R371C	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				16	0	0	4	4	50
PPP2R1A	0	genome.wustl.edu	37	19	52714705	52714705	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	52714705	52714705	T	A	SNP	PPP2R1A	ENST00000322088	human	ensembl	74_37	+1	known	missense	c.463	p.Y155N	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568				244	0	0	67	36	34.9515
BIRC8	0	genome.wustl.edu	37	19	53792958	53792958	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	53792958	53792958	T	C	SNP	BIRC8	ENST00000426466	human	ensembl	74_37	-1	known	missense	c.670	p.S224G	0.738	pfscan_Znf_RING	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC8	HGNC	ENSG00000163098				316	0	0	123	48	28.0702
MIR518E	0	genome.wustl.edu	37	19	54233099	54233099	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	54233099	54233099	C	T	SNP	MIR518E	ENST00000385252	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR518E	HGNC	ENSG00000207987				251	0	0	66	9	12
MYADM	0	genome.wustl.edu	37	19	54377200	54377200	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	54377200	54377200	C	T	SNP	MYADM	ENST00000336967	human	ensembl	74_37	+1	known	silent	c.417	p.A139	0.547	pfam_Marvel	pfam_Marvel	-	no_errors	MYADM	HGNC	ENSG00000179820				146	0	0	54	16	22.8571
CACNG7	0	genome.wustl.edu	37	19	54444823	54444823	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	54444823	54444823	A	G	SNP	CACNG7	ENST00000222212	human	ensembl	74_37	+1	known	missense	c.524	p.Y175C	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g7su,prints_VDCC_gsu	-	no_errors	CACNG7	HGNC	ENSG00000105605				231	0	0	83	32	27.8261
LAIR1	0	genome.wustl.edu	37	19	54867847	54867847	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	54867847	54867847	C	A	SNP	LAIR1	ENST00000391742	human	ensembl	74_37	-1	known	missense	c.656	p.R219M	0.000	NULL	smart_Ig_sub	-	no_errors	LAIR1	HGNC	ENSG00000167613				73	0	0	26	14	35
LILRB1	0	genome.wustl.edu	37	19	55143520	55143520	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	55143520	55143520	C	A	SNP	LILRB1	ENST00000324602	human	ensembl	74_37	+1	known	missense	c.493	p.P165T	0.004	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB1	HGNC	ENSG00000104972				247	0	0	100	33	24.812
DNAAF3	0	genome.wustl.edu	37	19	55677184	55677184	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	55677184	55677184	A	G	SNP	DNAAF3	ENST00000455045	human	ensembl	74_37	-1	known	missense	c.32	p.L11S	0.035	NULL	NULL	-	no_errors	DNAAF3	HGNC	ENSG00000167646				12	0	0	7	3	30
SUV420H2	0	genome.wustl.edu	37	19	55858419	55858419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	55858419	55858419	C	T	SNP	SUV420H2	ENST00000255613	human	ensembl	74_37	+1	known	missense	c.991	p.R331W	0.697	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H2	HGNC	ENSG00000133247				42	0	0	14	11	44
SAFB2	0	genome.wustl.edu	37	19	5590363	5590363	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	5590363	5590363	G	A	SNP	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	silent	c.2451	p.D817	1.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				35	0	0	4	8	66.6667
ZNF524	0	genome.wustl.edu	37	19	56114133	56114133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	56114133	56114133	C	T	SNP	ZNF524	ENST00000301073	human	ensembl	74_37	+1	known	missense	c.655	p.R219C	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF524	HGNC	ENSG00000171443				43	0	0	14	5	26.3158
NLRP8	0	genome.wustl.edu	37	19	56467067	56467067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	56467067	56467067	G	A	SNP	NLRP8	ENST00000291971	human	ensembl	74_37	+1	known	missense	c.1643	p.S548N	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709				167	0	0	64	43	40.1869
C19orf70	0	genome.wustl.edu	37	19	5679395	5679395	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	5679395	5679395	G	C	SNP	C19orf70	ENST00000309324	human	ensembl	74_37	-1	known	missense	c.220	p.P74A	1.000	NULL	NULL	-	no_errors	C19orf70	HGNC	ENSG00000174917				55	0	0	13	3	18.75
ZNF71	0	genome.wustl.edu	37	19	57132704	57132704	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	57132704	57132704	G	A	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	missense	c.49	p.V17I	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				120	0	0	38	12	24
AURKC	0	genome.wustl.edu	37	19	57743478	57743478	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	57743478	57743478	G	T	SNP	AURKC	ENST00000302804	human	ensembl	74_37	+1	known	missense	c.182	p.R61L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AURKC	HGNC	ENSG00000105146				78	0	0	26	8	23.5294
ENSG00000268678	0	genome.wustl.edu	37	19	57863009	57863009	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	57863009	57863009	G	A	SNP	ENSG00000268678	ENST00000597973	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTC-444N24.13	Clone_based_vega_gene	ENSG00000268678				188	0	0	56	27	32.5301
ZNF552	0	genome.wustl.edu	37	19	58320162	58320162	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	58320162	58320162	G	A	SNP	ZNF552	ENST00000391701	human	ensembl	74_37	-1	known	missense	c.470	p.A157V	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF552	HGNC	ENSG00000178935				238	1	0.41841	83	19	18.6275
ZNF587B	0	genome.wustl.edu	37	19	58353003	58353003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	58353003	58353003	G	A	SNP	ZNF587B	ENST00000442832	human	ensembl	74_37	+1	known	missense	c.961	p.A321T	0.913	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587B	HGNC	ENSG00000269343				22	0	0	14	7	33.3333
C19orf18	0	genome.wustl.edu	37	19	58485726	58485726	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	58485726	58485726	C	T	SNP	C19orf18	ENST00000314391	human	ensembl	74_37	-1	known	silent	c.75	p.P25	0.001	NULL	NULL	-	no_errors	C19orf18	HGNC	ENSG00000177025				97	0	0	35	24	40.678
RFX2	0	genome.wustl.edu	37	19	6007164	6007164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	6007164	6007164	C	T	SNP	RFX2	ENST00000303657	human	ensembl	74_37	-1	known	missense	c.1261	p.E421K	0.992	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX2	HGNC	ENSG00000087903				86	0	0	40	4	9.09091
SLC25A23	0	genome.wustl.edu	37	19	6454638	6454638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	6454638	6454638	C	T	SNP	SLC25A23	ENST00000264088	human	ensembl	74_37	-1	known	missense	c.715	p.G239S	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A23	HGNC	ENSG00000125648				69	0	0	34	19	35.8491
ARHGEF18	0	genome.wustl.edu	37	19	7531846	7531846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	7531846	7531846	G	A	SNP	ARHGEF18	ENST00000359920	human	ensembl	74_37	+1	known	missense	c.2383	p.V795I	0.001	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880				172	0	0	48	26	35.1351
STXBP2	0	genome.wustl.edu	37	19	7707183	7707183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	7707183	7707183	C	T	SNP	STXBP2	ENST00000221283	human	ensembl	74_37	+1	known	missense	c.758	p.A253V	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP2	HGNC	ENSG00000076944				88	0	0	43	13	23.2143
SNAPC2	0	genome.wustl.edu	37	19	7986933	7986933	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	7986933	7986933	C	T	SNP	SNAPC2	ENST00000221573	human	ensembl	74_37	+1	known	missense	c.386	p.A129V	0.674	pfam_SnAPC_su2-like	pfam_SnAPC_su2-like	-	no_errors	SNAPC2	HGNC	ENSG00000104976				394	0	0	123	42	25.4545
FBN3	0	genome.wustl.edu	37	19	8171110	8171110	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	8171110	8171110	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	silent	c.4695	p.D1565	0.994	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				59	0	0	25	19	43.1818
ADAMTS10	0	genome.wustl.edu	37	19	8657677	8657677	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	8657677	8657677	C	T	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	silent	c.1557	p.T519	0.999	NULL	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				54	0	0	8	4	33.3333
ACTL9	0	genome.wustl.edu	37	19	8808703	8808703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	8808703	8808703	C	T	SNP	ACTL9	ENST00000324436	human	ensembl	74_37	-1	known	missense	c.349	p.G117S	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL9	HGNC	ENSG00000181786				80	0	0	14	18	56.25
ACTL9	0	genome.wustl.edu	37	19	8808765	8808765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	8808765	8808765	G	A	SNP	ACTL9	ENST00000324436	human	ensembl	74_37	-1	known	missense	c.287	p.T96M	0.065	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL9	HGNC	ENSG00000181786				55	0	0	17	11	39.2857
MUC16	0	genome.wustl.edu	37	19	8969323	8969323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	8969323	8969323	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.43021	p.P14341S	0.017	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				171	0	0	68	25	26.8817
MUC16	0	genome.wustl.edu	37	19	8993496	8993496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	8993496	8993496	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.41593	p.R13865C	0.000	pfam_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				162	1	0.613497	60	34	36.1702
ZNF317	0	genome.wustl.edu	37	19	9271917	9271917	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	9271917	9271917	C	T	SNP	ZNF317	ENST00000247956	human	ensembl	74_37	+1	known	silent	c.1596	p.C532	0.062	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803				114	0	0	38	13	25.4902
OR7E24	0	genome.wustl.edu	37	19	9362175	9362175	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	9362175	9362175	C	T	SNP	OR7E24	ENST00000456448	human	ensembl	74_37	+1	known	silent	c.456	p.I152	0.013	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521				110	0	0	56	11	16.4179
CHST10	0	genome.wustl.edu	37	2	101009849	101009849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	101009849	101009849	G	A	SNP	CHST10	ENST00000542617	human	ensembl	74_37	-1	known	missense	c.1073	p.P358L	0.994	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	CHST10	HGNC	ENSG00000115526				142	0	0	57	19	25
RNF149	0	genome.wustl.edu	37	2	101924856	101924856	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	101924856	101924856	G	A	SNP	RNF149	ENST00000295317	human	ensembl	74_37	-1	known	silent	c.195	p.G65	0.998	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF149	HGNC	ENSG00000163162				89	0	0	26	8	23.5294
GPR45	0	genome.wustl.edu	37	2	105858508	105858508	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	105858508	105858508	A	G	SNP	GPR45	ENST00000258456	human	ensembl	74_37	+1	known	missense	c.193	p.M65V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR45	HGNC	ENSG00000135973				247	0	0	77	37	32.4561
GPR45	0	genome.wustl.edu	37	2	105859310	105859310	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	105859310	105859310	G	A	SNP	GPR45	ENST00000258456	human	ensembl	74_37	+1	known	missense	c.995	p.R332H	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR45	HGNC	ENSG00000135973				196	0	0	61	35	36.4583
ST6GAL2	0	genome.wustl.edu	37	2	107459646	107459646	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	107459646	107459646	G	A	SNP	ST6GAL2	ENST00000361686	human	ensembl	74_37	-1	known	missense	c.788	p.T263M	0.983	NULL	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	-	no_errors	ST6GAL2	HGNC	ENSG00000144057				8	0	0	4	2	33.3333
ATP6V1C2	0	genome.wustl.edu	37	2	10908853	10908853	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	10908853	10908853	G	A	SNP	ATP6V1C2	ENST00000272238	human	ensembl	74_37	+1	known	silent	c.387	p.A129	0.840	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C2	HGNC	ENSG00000143882				159	0	0	33	13	28.2609
RANBP2	0	genome.wustl.edu	37	2	109389034	109389034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	109389034	109389034	G	A	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.8110	p.A2704T	0.028	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				94	0	0	37	22	37.2881
IL1F10	0	genome.wustl.edu	37	2	113832828	113832828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	113832828	113832828	G	A	SNP	IL1F10	ENST00000337569	human	ensembl	74_37	+1	known	missense	c.346	p.A116T	1.000	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1,prints_IL-1_beta	-	no_errors	IL1F10	HGNC	ENSG00000136697				259	0	0	130	14	9.72222
GREB1	0	genome.wustl.edu	37	2	11750856	11750856	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	11750856	11750856	C	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	silent	c.2709	p.L903	0.234	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				81	0	0	41	18	30.5085
INHBB	0	genome.wustl.edu	37	2	121104098	121104098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	121104098	121104098	G	A	SNP	INHBB	ENST00000295228	human	ensembl	74_37	+1	known	missense	c.334	p.A112T	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaB,prints_Inhibin_asu	-	no_errors	INHBB	HGNC	ENSG00000163083				25	0	0	3	4	57.1429
CNTNAP5	0	genome.wustl.edu	37	2	125504943	125504943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	125504943	125504943	G	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.2212	p.D738N	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				229	0	0	98	36	26.8657
ERCC3	0	genome.wustl.edu	37	2	128044555	128044555	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	128044555	128044555	T	C	SNP	ERCC3	ENST00000285398	human	ensembl	74_37	-1	known	missense	c.1066	p.T356A	1.000	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_Helicase_Ercc3	pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_Helicase_Ercc3,tigrfam_Helicase_Ercc3	-	no_errors	ERCC3	HGNC	ENSG00000163161				102	0	0	33	23	41.0714
WDR33	0	genome.wustl.edu	37	2	128471514	128471514	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	128471514	128471514	C	A	SNP	WDR33	ENST00000322313	human	ensembl	74_37	-1	known	missense	c.2951	p.G984V	0.996	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709				98	0	0	54	24	30.7692
POTEE	0	genome.wustl.edu	37	2	132021676	132021676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	132021676	132021676	G	A	SNP	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	missense	c.2648	p.R883Q	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219				197	1	0.505051	85	32	27.3504
TUBA3D	0	genome.wustl.edu	37	2	132238309	132238309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	132238309	132238309	C	T	SNP	TUBA3D	ENST00000321253	human	ensembl	74_37	+1	known	missense	c.1043	p.P348L	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886				116	0	0	47	29	38.1579
LCT	0	genome.wustl.edu	37	2	136567017	136567017	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	136567017	136567017	C	T	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	missense	c.2900	p.R967Q	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				132	0	0	52	24	31.5789
THSD7B	0	genome.wustl.edu	37	2	137990635	137990635	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	137990635	137990635	T	C	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	silent	c.2082	p.C694	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				70	0	0	19	13	40.625
LRP1B	0	genome.wustl.edu	37	2	141079561	141079561	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	141079561	141079561	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.12611	p.N4204S	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				121	0	0	43	19	30.6452
LRP1B	0	genome.wustl.edu	37	2	141457908	141457908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	141457908	141457908	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.6710	p.G2237D	0.999	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				176	0	0	82	35	29.9145
LRP1B	0	genome.wustl.edu	37	2	141609279	141609279	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	141609279	141609279	A	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.4653	p.S1551R	0.805	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				204	1	0.487805	83	11	11.7021
KYNU	0	genome.wustl.edu	37	2	143685243	143685243	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	143685243	143685243	T	C	SNP	KYNU	ENST00000424385	human	ensembl	74_37	+1	known	missense	c.185	p.M62T	0.993	NULL	NULL	-	no_errors	KYNU	HGNC	ENSG00000115919				203	0	0	67	34	33.6634
GTDC1	0	genome.wustl.edu	37	2	144903180	144903180	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	144903180	144903180	C	T	SNP	GTDC1	ENST00000344850	human	ensembl	74_37	-1	known	silent	c.306	p.Q102	1.000	pfam_GlycosylTrfase_1_N	pfam_GlycosylTrfase_1_N,pfam_Glyco_trans_1	-	no_errors	GTDC1	HGNC	ENSG00000121964				121	0	0	48	13	21.3115
NEB	0	genome.wustl.edu	37	2	152500609	152500609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	152500609	152500609	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.7679	p.G2560D	1.000	pfam_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				498	0	0	250	80	24.2424
NR4A2	0	genome.wustl.edu	37	2	157182695	157182695	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	157182695	157182695	A	G	SNP	NR4A2	ENST00000539077	human	ensembl	74_37	-1	known	missense	c.1540	p.F514L	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NURR_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A2	HGNC	ENSG00000153234				76	0	0	27	18	40
KCNH7	0	genome.wustl.edu	37	2	163228392	163228392	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	163228392	163228392	C	A	SNP	KCNH7	ENST00000332142	human	ensembl	74_37	-1	known	nonsense	c.3538	p.G1180*	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611				71	0	0	34	18	34.6154
PXDN	0	genome.wustl.edu	37	2	1652304	1652304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	1652304	1652304	C	T	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.3248	p.R1083Q	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				52	0	0	23	10	30.303
SCN3A	0	genome.wustl.edu	37	2	165946887	165946887	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	165946887	165946887	T	A	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	missense	c.5776	p.N1926Y	0.000	pfscan_IQ_motif_EF-hand-BS	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				66	0	0	25	14	35.8974
SCN2A	0	genome.wustl.edu	37	2	166171996	166171996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	166171996	166171996	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.1399	p.A467T	0.996	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				108	1	0.917431	51	22	30.137
SCN9A	0	genome.wustl.edu	37	2	167168191	167168191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	167168191	167168191	G	A	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.76	p.R26C	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				170	0	0	56	29	34.1176
ABCB11	0	genome.wustl.edu	37	2	169836427	169836427	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	169836427	169836427	G	A	SNP	ABCB11	ENST00000263817	human	ensembl	74_37	-1	known	silent	c.1146	p.A382	0.997	superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB11	HGNC	ENSG00000073734				82	0	0	18	10	35.7143
PPIG	0	genome.wustl.edu	37	2	170493494	170493494	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	170493494	170493494	C	T	SNP	PPIG	ENST00000260970	human	ensembl	74_37	+1	known	nonsense	c.1726	p.R576*	0.993	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398				96	0	0	22	11	33.3333
PDE11A	0	genome.wustl.edu	37	2	178936561	178936561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	178936561	178936561	G	A	SNP	PDE11A	ENST00000286063	human	ensembl	74_37	-1	known	missense	c.604	p.R202C	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655				217	0	0	90	29	24.3697
TTN	0	genome.wustl.edu	37	2	179407141	179407141	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	179407141	179407141	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.89638	p.L29880	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				54	0	0	26	7	21.2121
TTN	0	genome.wustl.edu	37	2	179612351	179612351	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	179612351	179612351	G	T	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	missense	c.14776	p.Q4926K	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				131	0	0	79	29	26.8519
MSGN1	0	genome.wustl.edu	37	2	17997882	17997882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	17997882	17997882	G	A	SNP	MSGN1	ENST00000281047	human	ensembl	74_37	+1	known	missense	c.97	p.A33T	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MSGN1	HGNC	ENSG00000151379				92	0	0	41	18	30.5085
CERKL	0	genome.wustl.edu	37	2	182468728	182468728	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	182468728	182468728	C	T	SNP	CERKL	ENST00000339098	human	ensembl	74_37	-1	known	missense	c.317	p.R106H	1.000	NULL	pfam_Diacylglycerol_kinase_cat_dom	-	no_errors	CERKL	HGNC	ENSG00000188452				38	0	0	21	19	47.5
ZSWIM2	0	genome.wustl.edu	37	2	187693320	187693320	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	187693320	187693320	T	C	SNP	ZSWIM2	ENST00000295131	human	ensembl	74_37	-1	known	silent	c.1293	p.L431	0.651	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012				93	0	0	48	21	30.4348
ZSWIM2	0	genome.wustl.edu	37	2	187713711	187713711	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	187713711	187713711	C	T	SNP	ZSWIM2	ENST00000295131	human	ensembl	74_37	-1	known	silent	c.147	p.P49	0.078	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012				119	0	0	25	24	48.9796
ANKAR	0	genome.wustl.edu	37	2	190611170	190611170	+	Silent	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	190611170	190611170	T	G	SNP	ANKAR	ENST00000313581	human	ensembl	74_37	+1	known	silent	c.4122	p.P1374	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687				263	0	0	118	44	27.1605
GLS	0	genome.wustl.edu	37	2	191760352	191760352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	191760352	191760352	G	A	SNP	GLS	ENST00000320717	human	ensembl	74_37	+1	known	missense	c.506	p.R169Q	1.000	NULL	pfam_Glutaminase,pfam_Ankyrin_rpt,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_Glutaminase	-	no_errors	GLS	HGNC	ENSG00000115419				93	0	0	47	20	29.8507
ALS2CR11	0	genome.wustl.edu	37	2	202483623	202483623	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	202483623	202483623	G	A	SNP	ALS2CR11	ENST00000286195	human	ensembl	74_37	-1	known	silent	c.231	p.N77	0.096	NULL	superfamily_C2_dom	-	no_errors	ALS2CR11	HGNC	ENSG00000155754				38	0	0	14	7	33.3333
MPP4	0	genome.wustl.edu	37	2	202520921	202520921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	202520921	202520921	C	T	SNP	MPP4	ENST00000359962	human	ensembl	74_37	-1	known	missense	c.1300	p.G434R	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP4	HGNC	ENSG00000082126				18	0	0	9	3	25
ALS2	0	genome.wustl.edu	37	2	202575807	202575807	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	202575807	202575807	C	T	SNP	ALS2	ENST00000264276	human	ensembl	74_37	-1	known	silent	c.4029	p.Q1343	0.998	NULL	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_RCC1/BLIP-II,superfamily_DH-domain,smart_MORN,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain,prints_Reg_chr_condens	-	no_errors	ALS2	HGNC	ENSG00000003393				98	0	0	43	17	28.3333
ADAM23	0	genome.wustl.edu	37	2	207482398	207482398	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	207482398	207482398	T	C	SNP	ADAM23	ENST00000374416	human	ensembl	74_37	+1	known	missense	c.2455	p.Y819H	0.925	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948				29	0	0	12	5	29.4118
KLF7	0	genome.wustl.edu	37	2	207953238	207953238	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	207953238	207953238	C	T	SNP	KLF7	ENST00000423015	human	ensembl	74_37	-1	putative	missense	c.599	p.R200Q	0.698	NULL	NULL	-	no_errors	KLF7	HGNC	ENSG00000118263				145	0	0	54	33	37.931
HS1BP3	0	genome.wustl.edu	37	2	20845118	20845118	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	20845118	20845118	C	A	SNP	HS1BP3	ENST00000304031	human	ensembl	74_37	-1	known	missense	c.180	p.E60D	0.992	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	HS1BP3	HGNC	ENSG00000118960				136	0	0	46	15	24.5902
PLEKHM3	0	genome.wustl.edu	37	2	208725856	208725856	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	208725856	208725856	T	C	SNP	PLEKHM3	ENST00000427836	human	ensembl	74_37	-1	known	missense	c.2081	p.Y694C	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHM3	HGNC	ENSG00000178385				209	0	0	103	52	33.5484
PIKFYVE	0	genome.wustl.edu	37	2	209209918	209209918	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	209209918	209209918	G	A	SNP	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	missense	c.5111	p.S1704N	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020				76	0	0	23	13	36.1111
PIKFYVE	0	genome.wustl.edu	37	2	209212722	209212722	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	209212722	209212722	C	T	SNP	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	silent	c.5349	p.T1783	0.973	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020				177	0	0	40	14	25.9259
MAP2	0	genome.wustl.edu	37	2	210559225	210559225	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	210559225	210559225	A	G	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.2331	p.E777	0.337	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				171	0	0	74	42	36.2069
MAP2	0	genome.wustl.edu	37	2	210570373	210570373	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	210570373	210570373	C	T	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	nonsense	c.4654	p.R1552*	0.074	NULL	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				226	0	0	111	34	23.4483
ERBB4	0	genome.wustl.edu	37	2	212589893	212589893	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	212589893	212589893	A	G	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.649	p.C217R	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				174	0	0	44	19	30.1587
FN1	0	genome.wustl.edu	37	2	216257776	216257776	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	216257776	216257776	A	G	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.3947	p.V1316A	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				124	0	0	43	16	27.1186
TNS1	0	genome.wustl.edu	37	2	218674687	218674687	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	218674687	218674687	A	G	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	missense	c.4820	p.V1607A	1.000	pfam_PTB,smart_PTB/PI_dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				83	0	0	23	7	23.3333
CCDC108	0	genome.wustl.edu	37	2	219900384	219900384	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	219900384	219900384	G	A	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	silent	c.360	p.P120	0.000	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				83	0	0	40	14	25.9259
SLC23A3	0	genome.wustl.edu	37	2	220033482	220033482	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	220033482	220033482	A	G	SNP	SLC23A3	ENST00000455516	human	ensembl	74_37	-1	known	missense	c.590	p.F197S	0.149	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901				72	0	0	22	8	26.6667
ANKZF1	0	genome.wustl.edu	37	2	220098560	220098560	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	220098560	220098560	C	T	SNP	ANKZF1	ENST00000323348	human	ensembl	74_37	+1	known	nonsense	c.943	p.Q315*	0.391	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKZF1	HGNC	ENSG00000163516				100	0	0	71	30	29.703
SPEG	0	genome.wustl.edu	37	2	220307904	220307904	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	220307904	220307904	C	T	SNP	SPEG	ENST00000403148	human	ensembl	74_37	+1	known	silent	c.108	p.A36	0.032	NULL	NULL	-	no_errors	SPEG	HGNC	ENSG00000072195				205	0	0	72	32	30.7692
SPEG	0	genome.wustl.edu	37	2	220331921	220331921	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	220331921	220331921	C	T	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	silent	c.2907	p.A969	1.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				231	0	0	64	23	26.4368
SERPINE2	0	genome.wustl.edu	37	2	224856607	224856607	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	224856607	224856607	C	T	SNP	SERPINE2	ENST00000258405	human	ensembl	74_37	-1	known	missense	c.598	p.E200K	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINE2	HGNC	ENSG00000135919				77	0	0	33	12	26.6667
SERPINE2	0	genome.wustl.edu	37	2	224866442	224866442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	224866442	224866442	G	A	SNP	SERPINE2	ENST00000258405	human	ensembl	74_37	-1	known	missense	c.176	p.A59V	0.978	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINE2	HGNC	ENSG00000135919				119	0	0	53	30	36.1446
DOCK10	0	genome.wustl.edu	37	2	225637972	225637972	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	225637972	225637972	T	C	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.6106	p.M2036V	1.000	pfam_DOCK_C,superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905				87	0	0	45	7	13.4615
ENSG00000236432	0	genome.wustl.edu	37	2	228102831	228102831	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	228102831	228102831	C	T	SNP	ENSG00000236432	ENST00000437673	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC097662.2	Clone_based_vega_gene	ENSG00000236432				36	0	0	27	9	25
SLC19A3	0	genome.wustl.edu	37	2	228560704	228560704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	228560704	228560704	C	T	SNP	SLC19A3	ENST00000258403	human	ensembl	74_37	-1	known	missense	c.1073	p.G358D	0.013	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A3	HGNC	ENSG00000135917				208	0	0	67	26	27.957
PID1	0	genome.wustl.edu	37	2	230020538	230020538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	230020538	230020538	C	T	SNP	PID1	ENST00000354069	human	ensembl	74_37	-1	known	missense	c.272	p.C91Y	1.000	smart_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	PID1	HGNC	ENSG00000153823				122	0	0	46	19	29.2308
SP100	0	genome.wustl.edu	37	2	231372706	231372706	+	Splice_Site	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	231372706	231372706	A	G	SNP	SP100	ENST00000340126	human	ensembl	74_37	+1	known	splice_site	c.2014-2	e23-2	0.999	-	-	-	no_errors	SP100	HGNC	ENSG00000067066				78	0	0	31	10	24.3902
ALPP	0	genome.wustl.edu	37	2	233244007	233244007	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	233244007	233244007	A	G	SNP	ALPP	ENST00000392027	human	ensembl	74_37	+1	known	silent	c.291	p.P97	0.888	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283				66	0	0	27	8	22.8571
ALPP	0	genome.wustl.edu	37	2	233244010	233244010	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	233244010	233244010	T	C	SNP	ALPP	ENST00000392027	human	ensembl	74_37	+1	known	silent	c.294	p.Y98	0.953	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283				64	0	0	26	8	23.5294
ECEL1	0	genome.wustl.edu	37	2	233350967	233350967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	233350967	233350967	C	T	SNP	ECEL1	ENST00000304546	human	ensembl	74_37	-1	known	missense	c.397	p.G133S	0.996	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551				29	0	0	8	5	38.4615
SH3BP4	0	genome.wustl.edu	37	2	235950020	235950020	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	235950020	235950020	A	G	SNP	SH3BP4	ENST00000344528	human	ensembl	74_37	+1	known	missense	c.607	p.T203A	0.066	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147				192	0	0	34	35	50.7246
PASK	0	genome.wustl.edu	37	2	242051830	242051830	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	242051830	242051830	G	A	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	missense	c.3379	p.R1127C	0.979	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				71	0	0	10	11	52.381
NCOA1	0	genome.wustl.edu	37	2	24990984	24990984	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	24990984	24990984	A	G	SNP	NCOA1	ENST00000288599	human	ensembl	74_37	+1	known	missense	c.4192	p.T1398A	1.000	NULL	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA1	HGNC	ENSG00000084676				258	0	0	104	49	32.0261
KCNK3	0	genome.wustl.edu	37	2	26950927	26950927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	26950927	26950927	G	A	SNP	KCNK3	ENST00000302909	human	ensembl	74_37	+1	known	missense	c.676	p.V226I	1.000	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK3	HGNC	ENSG00000171303				51	0	0	18	8	30.7692
SLC5A6	0	genome.wustl.edu	37	2	27424662	27424662	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	27424662	27424662	G	A	SNP	SLC5A6	ENST00000310574	human	ensembl	74_37	-1	known	silent	c.1416	p.I472	0.948	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074				81	0	0	23	17	42.5
IFT172	0	genome.wustl.edu	37	2	27683894	27683894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	27683894	27683894	C	T	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	missense	c.2509	p.A837T	0.998	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				276	0	0	104	42	28.7671
ZNF512	0	genome.wustl.edu	37	2	27821012	27821012	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	27821012	27821012	G	A	SNP	ZNF512	ENST00000355467	human	ensembl	74_37	+1	known	silent	c.168	p.S56	0.163	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512	HGNC	ENSG00000243943				165	0	0	76	34	30.9091
CLIP4	0	genome.wustl.edu	37	2	29358489	29358489	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	29358489	29358489	C	T	SNP	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	missense	c.605	p.A202V	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295				74	0	0	41	19	31.6667
ALK	0	genome.wustl.edu	37	2	29446357	29446357	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	29446357	29446357	C	T	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	silent	c.3210	p.Q1070	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094				59	0	0	18	7	28
LCLAT1	0	genome.wustl.edu	37	2	30682532	30682532	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	30682532	30682532	C	T	SNP	LCLAT1	ENST00000309052	human	ensembl	74_37	+1	known	silent	c.54	p.N18	0.001	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	LCLAT1	HGNC	ENSG00000172954				359	0	0	137	45	24.7253
NLRC4	0	genome.wustl.edu	37	2	32476259	32476259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	32476259	32476259	C	T	SNP	NLRC4	ENST00000360906	human	ensembl	74_37	-1	known	missense	c.674	p.G225D	0.001	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106				148	0	0	50	25	33.3333
LTBP1	0	genome.wustl.edu	37	2	33359928	33359928	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	33359928	33359928	G	A	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	missense	c.1102	p.G368S	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				110	0	0	36	29	44.6154
LTBP1	0	genome.wustl.edu	37	2	33488371	33488371	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	33488371	33488371	A	G	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	silent	c.2532	p.E844	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				208	0	0	92	33	26.4
RNASEH1	0	genome.wustl.edu	37	2	3604479	3604479	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	3604479	3604479	T	C	SNP	RNASEH1	ENST00000315212	human	ensembl	74_37	-1	known	silent	c.144	p.A48	0.001	pfam_RNase_H1_N,superfamily_Ribosomal_L9/RNase_H1_N,pirsf_RNase_H1_euk	pfam_RNaseH_domain,pfam_RNase_H1_N,superfamily_RNaseH-like_dom,superfamily_Ribosomal_L9/RNase_H1_N,pirsf_RNase_H1_euk,pfscan_RNaseH_domain	-	no_errors	RNASEH1	HGNC	ENSG00000171865				96	0	0	36	12	25
HEATR5B	0	genome.wustl.edu	37	2	37297376	37297376	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	37297376	37297376	C	T	SNP	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	silent	c.924	p.T308	0.994	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				269	0	0	120	49	28.9941
RMDN2	0	genome.wustl.edu	37	2	38178436	38178436	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	38178436	38178436	C	T	SNP	RMDN2	ENST00000234195	human	ensembl	74_37	+1	known	silent	c.78	p.D26	0.000	NULL	NULL	-	no_errors	RMDN2	HGNC	ENSG00000115841				142	0	0	58	42	42
SRBD1	0	genome.wustl.edu	37	2	45616440	45616440	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	45616440	45616440	G	A	SNP	SRBD1	ENST00000490133	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SRBD1	HGNC	ENSG00000068784				95	0	0	38	17	30.9091
SRBD1	0	genome.wustl.edu	37	2	45778293	45778293	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	45778293	45778293	C	G	SNP	SRBD1	ENST00000263736	human	ensembl	74_37	-1	known	missense	c.1646	p.G549A	1.000	smart_YqgF/RNaseH-like_dom	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784				71	0	0	30	8	21.0526
SRBD1	0	genome.wustl.edu	37	2	45801772	45801772	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	45801772	45801772	C	T	SNP	SRBD1	ENST00000263736	human	ensembl	74_37	-1	known	missense	c.1163	p.R388Q	1.000	pfam_Tex-like_N	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784				136	0	0	84	23	21.4953
EPAS1	0	genome.wustl.edu	37	2	46607459	46607459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	46607459	46607459	C	T	SNP	EPAS1	ENST00000263734	human	ensembl	74_37	+1	known	missense	c.1648	p.R550W	0.060	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016				195	0	0	63	22	25.8824
FSHR	0	genome.wustl.edu	37	2	49216165	49216165	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	49216165	49216165	T	A	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.475	p.T159S	0.014	NULL	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				61	0	0	20	10	33.3333
PSME4	0	genome.wustl.edu	37	2	54128645	54128645	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	54128645	54128645	G	T	SNP	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	missense	c.3127	p.L1043I	1.000	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				195	0	0	102	15	12.8205
USP34	0	genome.wustl.edu	37	2	61508272	61508272	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	61508272	61508272	T	C	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.5104	p.T1702A	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				41	0	0	19	14	42.4242
USP34	0	genome.wustl.edu	37	2	61515896	61515896	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	61515896	61515896	G	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	silent	c.4665	p.S1555	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				193	0	0	75	35	31.8182
APLF	0	genome.wustl.edu	37	2	68765314	68765314	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	68765314	68765314	A	G	SNP	APLF	ENST00000303795	human	ensembl	74_37	+1	known	missense	c.1115	p.N372S	0.005	NULL	pfam_Znf_C2H2_APLF-like,superfamily_SMAD_FHA_domain	-	no_errors	APLF	HGNC	ENSG00000169621				123	0	0	44	21	32.3077
CMPK2	0	genome.wustl.edu	37	2	7001506	7001506	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	7001506	7001506	C	T	SNP	CMPK2	ENST00000458098	human	ensembl	74_37	-1	known	silent	c.801	p.T267	0.646	superfamily_P-loop_NTPase,pirsf_UMP-CMP_kinase_mit	superfamily_P-loop_NTPase,pirsf_UMP-CMP_kinase_mit	-	no_errors	CMPK2	HGNC	ENSG00000134326				43	0	0	19	8	29.6296
SNRNP27	0	genome.wustl.edu	37	2	70131385	70131385	+	Splice_Site	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	70131385	70131385	G	A	SNP	SNRNP27	ENST00000244227	human	ensembl	74_37	+1	known	splice_site	c.414-1	e6-1	1.000	-	-	-	no_errors	SNRNP27	HGNC	ENSG00000124380				131	0	0	60	29	32.5843
MXD1	0	genome.wustl.edu	37	2	70164405	70164405	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	70164405	70164405	C	T	SNP	MXD1	ENST00000264444	human	ensembl	74_37	+1	known	silent	c.357	p.I119	0.988	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXD1	HGNC	ENSG00000059728				243	0	0	68	36	34.6154
ZNF638	0	genome.wustl.edu	37	2	71633328	71633328	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	71633328	71633328	T	C	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	missense	c.3071	p.V1024A	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				126	0	0	65	26	28.5714
RNF144A	0	genome.wustl.edu	37	2	7179767	7179767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	7179767	7179767	G	A	SNP	RNF144A	ENST00000320892	human	ensembl	74_37	+1	known	missense	c.755	p.G252D	1.000	NULL	pfam_Znf_C6HC,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF144A	HGNC	ENSG00000151692				227	0	0	97	36	27.0677
THNSL2	0	genome.wustl.edu	37	2	88474159	88474159	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	88474159	88474159	T	C	SNP	THNSL2	ENST00000324166	human	ensembl	74_37	+1	known	silent	c.225	p.D75	0.998	superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	-	no_errors	THNSL2	HGNC	ENSG00000144115				108	0	0	45	15	25
MRPS5	0	genome.wustl.edu	37	2	95766226	95766226	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	95766226	95766226	T	C	SNP	MRPS5	ENST00000272418	human	ensembl	74_37	-1	known	silent	c.924	p.Q308	0.932	pfam_Ribosomal_S5_C,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Ribosomal_S5_C,pfam_Ribosomal_S5_N,superfamily_Ribosomal_S5_D2-typ_fold,pfscan_Ribosomal_S5_N	-	no_errors	MRPS5	HGNC	ENSG00000144029				89	0	0	31	8	20.5128
ADRA2B	0	genome.wustl.edu	37	2	96780880	96780880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	96780880	96780880	G	A	SNP	ADRA2B	ENST00000409345	human	ensembl	74_37	-1	known	missense	c.1009	p.R337C	0.847	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2B_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2B_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA2B	HGNC	ENSG00000222040				22	0	0	1	7	87.5
ANKRD36	0	genome.wustl.edu	37	2	97866080	97866080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	97866080	97866080	G	A	SNP	ANKRD36	ENST00000420699	human	ensembl	74_37	+1	known	missense	c.2765	p.R922Q	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976				115	0	0	53	12	18.4615
ANKRD36	0	genome.wustl.edu	37	2	97866207	97866207	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	97866207	97866207	G	A	SNP	ANKRD36	ENST00000420699	human	ensembl	74_37	+1	known	silent	c.2802	p.K934	0.029	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976				22	0	0	18	4	18.1818
ZAP70	0	genome.wustl.edu	37	2	98349407	98349407	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	98349407	98349407	T	C	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	missense	c.625	p.Y209H	1.000	pfam_SH2,smart_SH2,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				74	0	0	28	10	26.3158
TMEM131	0	genome.wustl.edu	37	2	98377288	98377288	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	98377288	98377288	G	T	SNP	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	missense	c.4979	p.A1660D	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				138	0	0	47	18	27.6923
INPP4A	0	genome.wustl.edu	37	2	99170738	99170738	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	99170738	99170738	G	T	SNP	INPP4A	ENST00000074304	human	ensembl	74_37	+1	known	missense	c.1367	p.R456L	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4A	HGNC	ENSG00000040933				21	0	0	3	3	50
ESF1	0	genome.wustl.edu	37	20	13756530	13756530	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	13756530	13756530	G	A	SNP	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	missense	c.1024	p.R342C	1.000	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048				136	0	0	94	31	24.8
SEL1L2	0	genome.wustl.edu	37	20	13830886	13830886	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	13830886	13830886	A	G	SNP	SEL1L2	ENST00000284951	human	ensembl	74_37	-1	known	missense	c.1898	p.V633A	1.000	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251				104	1	0.952381	46	20	30.303
CRNKL1	0	genome.wustl.edu	37	20	20031250	20031250	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	20031250	20031250	G	A	SNP	CRNKL1	ENST00000377340	human	ensembl	74_37	-1	known	missense	c.551	p.P184L	1.000	NULL	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343				86	0	0	55	4	6.77966
THBD	0	genome.wustl.edu	37	20	23028480	23028480	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	23028480	23028480	G	A	SNP	THBD	ENST00000377103	human	ensembl	74_37	-1	known	silent	c.1662	p.C554	0.088	pirsf_CD93/CD141,prints_Thrombomodulin	pirsf_CD93/CD141,pfam_Tme5_EGF-like,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,prints_Thrombomodulin,pfscan_C-type_lectin	-	no_errors	THBD	HGNC	ENSG00000178726				14	0	0	6	3	33.3333
TGM6	0	genome.wustl.edu	37	20	2411645	2411645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	2411645	2411645	G	A	SNP	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	missense	c.1939	p.G647S	1.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				141	0	0	52	27	34.1772
VPS16	0	genome.wustl.edu	37	20	2847077	2847077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	2847077	2847077	G	A	SNP	VPS16	ENST00000380445	human	ensembl	74_37	+1	known	missense	c.2377	p.D793N	1.000	pfam_Vps16_C,pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305				132	1	0.75188	39	20	33.8983
CCM2L	0	genome.wustl.edu	37	20	30602726	30602726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	30602726	30602726	G	A	SNP	CCM2L	ENST00000300415	human	ensembl	74_37	+1	known	missense	c.50	p.R17Q	0.200	NULL	NULL	-	no_errors	CCM2L	HGNC	ENSG00000101331				324	0	0	117	33	22
KIF3B	0	genome.wustl.edu	37	20	30919102	30919102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	30919102	30919102	C	T	SNP	KIF3B	ENST00000375712	human	ensembl	74_37	+1	known	missense	c.2224	p.R742W	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3B	HGNC	ENSG00000101350				90	0	0	40	14	25.9259
SLC4A11	0	genome.wustl.edu	37	20	3209805	3209805	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	3209805	3209805	G	A	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	silent	c.2083	p.L695	1.000	pfam_HCO3_transpt_C	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				129	0	0	30	9	23.0769
MAP1LC3A	0	genome.wustl.edu	37	20	33147545	33147545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	33147545	33147545	G	A	SNP	MAP1LC3A	ENST00000360668	human	ensembl	74_37	+1	known	missense	c.209	p.R70H	1.000	pfam_Atg8_fam,pfam_Atg12	pfam_Atg8_fam,pfam_Atg12	-	no_errors	MAP1LC3A	HGNC	ENSG00000101460				159	0	0	60	22	26.8293
NCOA6	0	genome.wustl.edu	37	20	33345756	33345756	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	33345756	33345756	T	C	SNP	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	silent	c.795	p.Q265	0.696	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				76	0	0	45	4	8.16327
MYH7B	0	genome.wustl.edu	37	20	33567228	33567228	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	33567228	33567228	G	A	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	missense	c.253	p.A85T	1.000	pfam_Myosin_N,superfamily_Myosin_S1_N	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				90	0	0	18	7	28
MYH7B	0	genome.wustl.edu	37	20	33582020	33582020	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	33582020	33582020	T	A	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	missense	c.2642	p.L881H	1.000	superfamily_P-loop_NTPase	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				316	0	0	98	45	31.4685
TRPC4AP	0	genome.wustl.edu	37	20	33632505	33632505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	33632505	33632505	C	T	SNP	TRPC4AP	ENST00000252015	human	ensembl	74_37	-1	known	missense	c.668	p.R223Q	1.000	NULL	pfam_DUF3689	-	no_errors	TRPC4AP	HGNC	ENSG00000100991				130	1	0.763359	55	25	31.25
ERGIC3	0	genome.wustl.edu	37	20	34136287	34136287	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	34136287	34136287	C	T	SNP	ERGIC3	ENST00000447986	human	ensembl	74_37	+1	known	missense	c.487	p.R163W	1.000	pfam_Erv_C	pfam_Erv_C	-	no_errors	ERGIC3	HGNC	ENSG00000125991				77	0	0	27	12	30.7692
CPNE1	0	genome.wustl.edu	37	20	34218842	34218842	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	34218842	34218842	C	T	SNP	CPNE1	ENST00000317677	human	ensembl	74_37	-1	known	missense	c.991	p.V331M	1.000	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE1	HGNC	ENSG00000214078				181	0	0	60	31	34.0659
RBM12	0	genome.wustl.edu	37	20	34240845	34240845	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	34240845	34240845	G	A	SNP	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	silent	c.2400	p.G800	0.037	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462				93	0	0	39	17	30.3571
TTI1	0	genome.wustl.edu	37	20	36627620	36627620	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	36627620	36627620	G	A	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	silent	c.2763	p.D921	0.992	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				116	0	0	39	15	27.7778
SNHG11	0	genome.wustl.edu	37	20	37076727	37076727	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	37076727	37076727	G	A	SNP	SNHG11	ENST00000365032	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.118	-	-	-	no_errors	SNHG11	HGNC	ENSG00000174365				190	0	0	75	38	33.6283
ACTR5	0	genome.wustl.edu	37	20	37383681	37383681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	37383681	37383681	G	A	SNP	ACTR5	ENST00000243903	human	ensembl	74_37	+1	known	missense	c.857	p.G286D	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR5	HGNC	ENSG00000101442				109	0	0	57	24	29.6296
TRIB3	0	genome.wustl.edu	37	20	377077	377077	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	377077	377077	C	T	SNP	TRIB3	ENST00000422053	human	ensembl	74_37	+1	known	missense	c.901	p.R301C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	TRIB3	HGNC	ENSG00000101255				156	0	0	49	14	22.2222
CDC25B	0	genome.wustl.edu	37	20	3782935	3782935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	3782935	3782935	G	A	SNP	CDC25B	ENST00000245960	human	ensembl	74_37	+1	known	missense	c.1106	p.R369H	0.384	pfam_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25B	HGNC	ENSG00000101224				60	0	0	33	7	17.5
CHD6	0	genome.wustl.edu	37	20	40118601	40118601	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	40118601	40118601	G	T	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.1497	p.F499L	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				205	0	0	83	42	33.6
PTPRT	0	genome.wustl.edu	37	20	40980850	40980850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	40980850	40980850	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.1636	p.R546W	0.911	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				167	0	0	60	23	27.7108
ADRA1D	0	genome.wustl.edu	37	20	4202438	4202438	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	4202438	4202438	A	T	SNP	ADRA1D	ENST00000379453	human	ensembl	74_37	-1	known	missense	c.1451	p.V484D	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_ADRA1D_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	ADRA1D	HGNC	ENSG00000171873				14	0	0	3	3	50
FITM2	0	genome.wustl.edu	37	20	42935750	42935750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	42935750	42935750	C	T	SNP	FITM2	ENST00000396825	human	ensembl	74_37	-1	known	missense	c.304	p.A102T	0.111	pfam_FIT	pfam_FIT	-	no_errors	FITM2	HGNC	ENSG00000197296				81	0	0	27	10	27.027
MATN4	0	genome.wustl.edu	37	20	43933214	43933214	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	43933214	43933214	G	A	SNP	MATN4	ENST00000372754	human	ensembl	74_37	-1	known	silent	c.297	p.R99	0.433	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN4	HGNC	ENSG00000124159				42	0	0	17	7	29.1667
ACOT8	0	genome.wustl.edu	37	20	44483882	44483882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	44483882	44483882	C	T	SNP	ACOT8	ENST00000217455	human	ensembl	74_37	-1	known	missense	c.178	p.V60M	1.000	pfam_Acyl_CoA_thio_II_dom,tigrfam_Acyl_CoA_thio	pfam_Acyl_CoA_thio_II_dom,tigrfam_Acyl_CoA_thio	-	no_errors	ACOT8	HGNC	ENSG00000101473				240	0	0	65	20	23.5294
NCOA3	0	genome.wustl.edu	37	20	46276031	46276031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	46276031	46276031	G	A	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	missense	c.3467	p.R1156Q	0.994	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				124	0	0	57	22	27.8481
ARFGEF2	0	genome.wustl.edu	37	20	47628620	47628620	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	47628620	47628620	G	A	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.3917	p.R1306Q	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				105	0	0	47	14	22.9508
KCNB1	0	genome.wustl.edu	37	20	47991448	47991448	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	47991448	47991448	G	C	SNP	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	missense	c.649	p.L217V	0.996	NULL	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445				73	0	0	44	5	10.2041
TMEM189-UBE2V1	0	genome.wustl.edu	37	20	48744613	48744613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	48744613	48744613	C	T	SNP	TMEM189-UBE2V1	ENST00000341698	human	ensembl	74_37	-1	known	missense	c.590	p.R197H	0.078	pfam_KuaUb-conj-enz_UEV1	pfam_KuaUb-conj-enz_UEV1,pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	TMEM189-UBE2V1	HGNC	ENSG00000124208				94	0	0	32	18	36
NFATC2	0	genome.wustl.edu	37	20	50092134	50092134	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	50092134	50092134	G	A	SNP	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	missense	c.1396	p.R466W	0.987	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096				148	0	0	54	23	29.8701
ZFP64	0	genome.wustl.edu	37	20	50701174	50701174	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	50701174	50701174	G	A	SNP	ZFP64	ENST00000361387	human	ensembl	74_37	-1	known	silent	c.1860	p.S620	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				120	0	0	15	13	46.4286
ZNF217	0	genome.wustl.edu	37	20	52198731	52198731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	52198731	52198731	G	A	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	missense	c.635	p.S212F	0.010	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				312	0	0	123	57	31.6667
CHGB	0	genome.wustl.edu	37	20	5903119	5903119	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	5903119	5903119	A	G	SNP	CHGB	ENST00000378961	human	ensembl	74_37	+1	known	missense	c.329	p.E110G	0.058	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199				28	0	0	16	7	30.4348
CDH4	0	genome.wustl.edu	37	20	60419875	60419875	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	60419875	60419875	A	G	SNP	CDH4	ENST00000360469	human	ensembl	74_37	+1	known	missense	c.728	p.Y243C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242				64	0	0	17	8	32
MTG2	0	genome.wustl.edu	37	20	60773703	60773703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	60773703	60773703	C	T	SNP	MTG2	ENST00000370823	human	ensembl	74_37	+1	known	missense	c.482	p.T161M	1.000	pfam_GTP1_OBG_dom,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,tigrfam_GTP-bd_Obg/CgtA	pfam_GTP1_OBG_dom,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain,tigrfam_GTP-bd_Obg/CgtA,tigrfam_Small_GTP-bd_dom	-	no_errors	MTG2	HGNC	ENSG00000101181				45	0	0	15	6	28.5714
TCFL5	0	genome.wustl.edu	37	20	61488942	61488942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	61488942	61488942	C	T	SNP	TCFL5	ENST00000335351	human	ensembl	74_37	-1	known	missense	c.1043	p.R348H	0.768	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCFL5	HGNC	ENSG00000101190				110	0	0	51	38	42.6966
DIDO1	0	genome.wustl.edu	37	20	61512859	61512859	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	61512859	61512859	G	A	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	silent	c.4449	p.N1483	0.989	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				167	0	0	79	31	28.1818
RTEL1	0	genome.wustl.edu	37	20	62292794	62292794	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	62292794	62292794	G	A	SNP	RTEL1	ENST00000318100	human	ensembl	74_37	+1	known	silent	c.246	p.P82	0.000	superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366				58	0	0	26	8	23.5294
PLCB1	0	genome.wustl.edu	37	20	8639248	8639248	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	8639248	8639248	G	A	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	silent	c.759	p.Q253	1.000	pirsf_PLC-beta,pfam_PLipase_C_EF-hand-like	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				146	0	0	80	36	31.0345
NCAM2	0	genome.wustl.edu	37	21	22370891	22370891	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	22370891	22370891	C	A	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	missense	c.10	p.L4I	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				90	0	0	13	9	40.9091
NCAM2	0	genome.wustl.edu	37	21	22804504	22804504	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	22804504	22804504	G	A	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	silent	c.1557	p.P519	0.034	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				84	0	0	20	11	35.4839
SON	0	genome.wustl.edu	37	21	34922887	34922887	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	34922887	34922887	G	A	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	silent	c.1350	p.S450	0.058	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				90	0	0	11	14	56
CBR1	0	genome.wustl.edu	37	21	37444855	37444855	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	37444855	37444855	G	T	SNP	CBR1	ENST00000290349	human	ensembl	74_37	+1	known	missense	c.509	p.G170V	0.995	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	CBR1	HGNC	ENSG00000159228				77	0	0	27	21	43.75
RRP1B	0	genome.wustl.edu	37	21	45107700	45107700	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	45107700	45107700	C	T	SNP	RRP1B	ENST00000340648	human	ensembl	74_37	+1	known	missense	c.1445	p.A482V	0.005	NULL	pfam_Nop52	-	no_errors	RRP1B	HGNC	ENSG00000160208				179	0	0	46	15	24.5902
TRPM2	0	genome.wustl.edu	37	21	45810858	45810858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	45810858	45810858	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	missense	c.1390	p.R464C	1.000	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				218	0	0	55	29	34.5238
COL6A2	0	genome.wustl.edu	37	21	47545966	47545966	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	47545966	47545966	C	T	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	missense	c.2237	p.A746V	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				242	0	0	69	43	38.3929
COL6A2	0	genome.wustl.edu	37	21	47552362	47552362	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	47552362	47552362	A	G	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	missense	c.2956	p.T986A	0.888	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				53	0	0	19	8	29.6296
PCNT	0	genome.wustl.edu	37	21	47860946	47860946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	47860946	47860946	G	A	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.9572	p.R3191H	0.993	pfam_PACT_domain	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				121	0	0	64	17	20.9877
CCT8L2	0	genome.wustl.edu	37	22	17072083	17072083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	17072083	17072083	G	A	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	missense	c.1358	p.A453V	0.985	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				160	0	0	75	23	23.4694
SLC25A18	0	genome.wustl.edu	37	22	18069980	18069980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	18069980	18069980	G	A	SNP	SLC25A18	ENST00000327451	human	ensembl	74_37	+1	known	missense	c.488	p.R163H	0.979	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A18	HGNC	ENSG00000182902				252	2	0.787402	65	29	30.8511
ATP6V1E1	0	genome.wustl.edu	37	22	18082820	18082820	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	18082820	18082820	G	A	SNP	ATP6V1E1	ENST00000253413	human	ensembl	74_37	-1	known	silent	c.408	p.C136	1.000	pfam_ATPase_V1/A1-cplx_esu	pfam_ATPase_V1/A1-cplx_esu	-	no_errors	ATP6V1E1	HGNC	ENSG00000131100				134	0	0	39	19	32.7586
DGCR2	0	genome.wustl.edu	37	22	19028754	19028754	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	19028754	19028754	C	T	SNP	DGCR2	ENST00000263196	human	ensembl	74_37	-1	known	missense	c.1213	p.G405R	0.885	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,smart_VWF_C,pfscan_LDrepeatLR_classA_rpt,pfscan_C-type_lectin	-	no_errors	DGCR2	HGNC	ENSG00000070413				138	0	0	33	14	29.7872
VPREB1	0	genome.wustl.edu	37	22	22599386	22599386	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	22599386	22599386	G	A	SNP	VPREB1	ENST00000403807	human	ensembl	74_37	+1	known	silent	c.75	p.Q25	1.000	pfam_Ig_V-set,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VPREB1	HGNC	ENSG00000169575				134	0	0	40	16	28.5714
BCR	0	genome.wustl.edu	37	22	23615883	23615883	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	23615883	23615883	C	T	SNP	BCR	ENST00000305877	human	ensembl	74_37	+1	known	silent	c.2037	p.R679	0.791	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716				172	0	0	58	14	19.4444
SUSD2	0	genome.wustl.edu	37	22	24583691	24583691	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	24583691	24583691	C	T	SNP	SUSD2	ENST00000358321	human	ensembl	74_37	+1	known	silent	c.2044	p.L682	0.033	NULL	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Sushi_SCR_CCP,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994				140	0	0	36	40	52.6316
MYO18B	0	genome.wustl.edu	37	22	26286756	26286756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	26286756	26286756	C	T	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.4348	p.R1450C	1.000	superfamily_tRNA-bd_arm	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				71	0	0	27	9	25
MYO18B	0	genome.wustl.edu	37	22	26423244	26423244	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	26423244	26423244	G	A	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.7304	p.R2435H	0.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				287	0	0	55	30	35.2941
MYO18B	0	genome.wustl.edu	37	22	26423522	26423522	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	26423522	26423522	C	G	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.7582	p.P2528A	0.985	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				68	0	0	18	7	28
TFIP11	0	genome.wustl.edu	37	22	26902876	26902876	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	26902876	26902876	C	T	SNP	TFIP11	ENST00000405938	human	ensembl	74_37	-1	known	silent	c.228	p.A76	0.000	pfam_TIP_N	pfam_GCFC_dom,pfam_TIP_N,pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	TFIP11	HGNC	ENSG00000100109				106	0	0	32	17	34.6939
AP1B1	0	genome.wustl.edu	37	22	29750665	29750665	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	29750665	29750665	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	74_37	-1	known	silent	c.912	p.R304	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,smart_Armadillo,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				130	0	0	44	10	18.5185
ASCC2	0	genome.wustl.edu	37	22	30210714	30210714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	30210714	30210714	C	T	SNP	ASCC2	ENST00000307790	human	ensembl	74_37	-1	known	missense	c.652	p.G218R	0.917	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325				87	0	0	26	17	39.5349
OSM	0	genome.wustl.edu	37	22	30660085	30660085	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	30660085	30660085	C	T	SNP	OSM	ENST00000215781	human	ensembl	74_37	-1	known	silent	c.546	p.S182	0.000	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin	-	no_errors	OSM	HGNC	ENSG00000099985				53	0	0	18	9	33.3333
PLA2G3	0	genome.wustl.edu	37	22	31535952	31535952	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	31535952	31535952	T	A	SNP	PLA2G3	ENST00000215885	human	ensembl	74_37	-1	known	missense	c.389	p.K130M	0.058	NULL	pfam_PLipase_A2,superfamily_PLipase_A2_dom	-	no_errors	PLA2G3	HGNC	ENSG00000100078				70	0	0	35	4	10.2564
PATZ1	0	genome.wustl.edu	37	22	31731813	31731813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	31731813	31731813	G	A	SNP	PATZ1	ENST00000266269	human	ensembl	74_37	-1	known	missense	c.1372	p.R458C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	PATZ1	HGNC	ENSG00000100105				100	0	0	31	18	36.7347
SFI1	0	genome.wustl.edu	37	22	31957338	31957338	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	31957338	31957338	C	T	SNP	SFI1	ENST00000400288	human	ensembl	74_37	+1	known	missense	c.725	p.A242V	0.001	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089				58	0	0	15	6	28.5714
SFI1	0	genome.wustl.edu	37	22	32011096	32011096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	32011096	32011096	G	A	SNP	SFI1	ENST00000400288	human	ensembl	74_37	+1	known	missense	c.3131	p.R1044Q	0.000	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089				70	0	0	14	13	48.1481
LARGE	0	genome.wustl.edu	37	22	33712138	33712138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	33712138	33712138	G	A	SNP	LARGE	ENST00000354992	human	ensembl	74_37	-1	known	missense	c.1384	p.H462Y	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424				75	0	0	16	11	40.7407
MYH9	0	genome.wustl.edu	37	22	36718564	36718564	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	36718564	36718564	G	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	silent	c.615	p.G205	0.054	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				105	0	0	23	12	34.2857
SSTR3	0	genome.wustl.edu	37	22	37603075	37603075	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	37603075	37603075	C	T	SNP	SSTR3	ENST00000328544	human	ensembl	74_37	-1	known	silent	c.768	p.T256	0.006	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_3,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR3	HGNC	ENSG00000183473				142	0	0	44	21	32.3077
CDC42EP1	0	genome.wustl.edu	37	22	37964270	37964270	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	37964270	37964270	C	A	SNP	CDC42EP1	ENST00000249014	human	ensembl	74_37	+1	known	missense	c.619	p.L207I	1.000	NULL	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP1	HGNC	ENSG00000128283				195	0	0	53	16	23.1884
PICK1	0	genome.wustl.edu	37	22	38470374	38470374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	38470374	38470374	C	T	SNP	PICK1	ENST00000356976	human	ensembl	74_37	+1	known	missense	c.895	p.R299C	1.000	pfam_AH_dom,pfam_BAR_dom,pfscan_AH_dom	pfam_AH_dom,pfam_PDZ,pfam_BAR_dom,superfamily_PDZ,smart_PDZ,pfscan_AH_dom,pfscan_PDZ	-	no_errors	PICK1	HGNC	ENSG00000100151				84	0	0	28	5	15.1515
DDX17	0	genome.wustl.edu	37	22	38890734	38890734	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	38890734	38890734	C	T	SNP	DDX17	ENST00000396821	human	ensembl	74_37	-1	known	missense	c.1115	p.R372H	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201				220	0	0	100	36	26.4706
JOSD1	0	genome.wustl.edu	37	22	39085018	39085018	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	39085018	39085018	C	T	SNP	JOSD1	ENST00000216039	human	ensembl	74_37	-1	known	missense	c.431	p.R144Q	1.000	pfam_Josephin,pfscan_Josephin	pfam_Josephin,pfscan_Josephin	-	no_errors	JOSD1	HGNC	ENSG00000100221				170	0	0	51	36	41.3793
CACNA1I	0	genome.wustl.edu	37	22	39966799	39966799	+	Silent	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	39966799	39966799	C	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	silent	c.42	p.A14	0.348	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				59	0	0	11	10	47.619
CACNA1I	0	genome.wustl.edu	37	22	39996631	39996631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	39996631	39996631	G	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.455	p.R152H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				54	0	0	17	7	29.1667
TNRC6B	0	genome.wustl.edu	37	22	40661673	40661673	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	40661673	40661673	C	G	SNP	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	missense	c.1439	p.T480R	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				58	0	0	21	9	30
L3MBTL2	0	genome.wustl.edu	37	22	41620173	41620173	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	41620173	41620173	C	T	SNP	L3MBTL2	ENST00000216237	human	ensembl	74_37	+1	known	silent	c.1092	p.D364	0.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	L3MBTL2	HGNC	ENSG00000100395				128	0	0	57	15	20.8333
L3MBTL2	0	genome.wustl.edu	37	22	41626193	41626193	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	41626193	41626193	A	G	SNP	L3MBTL2	ENST00000216237	human	ensembl	74_37	+1	known	missense	c.2056	p.K686E	0.009	NULL	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	L3MBTL2	HGNC	ENSG00000100395				97	0	0	21	10	32.2581
ACO2	0	genome.wustl.edu	37	22	41923392	41923392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	41923392	41923392	C	T	SNP	ACO2	ENST00000216254	human	ensembl	74_37	+1	known	missense	c.2054	p.A685V	1.000	pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412				120	0	0	40	11	21.5686
WBP2NL	0	genome.wustl.edu	37	22	42423145	42423145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	42423145	42423145	C	T	SNP	WBP2NL	ENST00000328823	human	ensembl	74_37	+1	known	missense	c.890	p.A297V	0.079	NULL	pfam_WW-domain-binding,pfam_GRAM	-	no_errors	WBP2NL	HGNC	ENSG00000183066				193	0	0	82	30	26.7857
NAGA	0	genome.wustl.edu	37	22	42463223	42463223	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	42463223	42463223	G	A	SNP	NAGA	ENST00000396398	human	ensembl	74_37	-1	known	silent	c.396	p.G132	1.000	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	NAGA	HGNC	ENSG00000198951				299	0	0	98	55	35.9477
RRP7B	0	genome.wustl.edu	37	22	42972066	42972066	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	42972066	42972066	G	A	SNP	RRP7B	ENST00000357802	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.935	-	-	-	no_errors	RRP7B	HGNC	ENSG00000182841				33	0	0	12	3	20
PARVG	0	genome.wustl.edu	37	22	44602226	44602226	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	44602226	44602226	C	G	SNP	PARVG	ENST00000415224	human	ensembl	74_37	+1	known	missense	c.916	p.L306V	0.421	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVG	HGNC	ENSG00000138964				136	0	0	35	8	18.6047
FAM118A	0	genome.wustl.edu	37	22	45728354	45728354	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	45728354	45728354	T	C	SNP	FAM118A	ENST00000216214	human	ensembl	74_37	+1	known	missense	c.700	p.C234R	1.000	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom	-	no_errors	FAM118A	HGNC	ENSG00000100376				285	1	0.34965	106	50	32.0513
FBLN1	0	genome.wustl.edu	37	22	45959041	45959041	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	45959041	45959041	C	T	SNP	FBLN1	ENST00000262722	human	ensembl	74_37	+1	known	silent	c.1947	p.P649	0.070	pirsf_Fibulin-1	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,smart_Anaphylatoxin/fibulin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_Fibulin-1,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN1	HGNC	ENSG00000077942				134	0	0	61	20	24.6914
ABI3BP	0	genome.wustl.edu	37	3	100567662	100567662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	100567662	100567662	G	A	SNP	ABI3BP	ENST00000284322	human	ensembl	74_37	-1	known	missense	c.1433	p.P478L	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175				113	0	0	47	9	16.0714
ABI3BP	0	genome.wustl.edu	37	3	100593724	100593724	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	100593724	100593724	G	T	SNP	ABI3BP	ENST00000284322	human	ensembl	74_37	-1	known	missense	c.892	p.L298I	0.743	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175				19	0	0	10	4	28.5714
ATP2B2	0	genome.wustl.edu	37	3	10392233	10392233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	10392233	10392233	C	T	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	missense	c.2165	p.R722Q	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				113	0	0	30	21	41.1765
PHLDB2	0	genome.wustl.edu	37	3	111603433	111603433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	111603433	111603433	G	A	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	missense	c.509	p.R170Q	0.340	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824				107	0	0	86	27	23.8938
PHLDB2	0	genome.wustl.edu	37	3	111604167	111604167	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	111604167	111604167	A	G	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	missense	c.1243	p.S415G	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824				157	0	0	92	23	20
CD200	0	genome.wustl.edu	37	3	112063825	112063825	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	112063825	112063825	G	A	SNP	CD200	ENST00000473539	human	ensembl	74_37	+1	known	silent	c.186	p.Q62	0.998	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD200	HGNC	ENSG00000091972				115	0	0	53	15	22.0588
BOC	0	genome.wustl.edu	37	3	112993431	112993431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	112993431	112993431	C	T	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	missense	c.1444	p.R482C	0.995	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				79	0	0	41	16	28.0702
KIAA2018	0	genome.wustl.edu	37	3	113378335	113378335	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	113378335	113378335	T	C	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.2194	p.S732G	0.912	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				113	0	0	98	23	19.0083
QTRTD1	0	genome.wustl.edu	37	3	113795748	113795748	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	113795748	113795748	G	A	SNP	QTRTD1	ENST00000281273	human	ensembl	74_37	+1	known	silent	c.705	p.L235	0.994	pfam_tRNA_ribo_trans-like,superfamily_tRNA_ribo_trans-like,tigrfam_tRNA_ribo_trans-like	pfam_tRNA_ribo_trans-like,superfamily_tRNA_ribo_trans-like,tigrfam_tRNA_ribo_trans-like	-	no_errors	QTRTD1	HGNC	ENSG00000151576				84	0	0	39	13	25
UPK1B	0	genome.wustl.edu	37	3	118917942	118917942	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	118917942	118917942	C	T	SNP	UPK1B	ENST00000264234	human	ensembl	74_37	+1	known	silent	c.687	p.H229	0.402	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1B	HGNC	ENSG00000114638				80	0	0	40	17	29.8246
ARHGAP31	0	genome.wustl.edu	37	3	119120749	119120749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	119120749	119120749	G	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.1150	p.G384S	0.014	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				130	0	0	75	15	16.6667
ARHGAP31	0	genome.wustl.edu	37	3	119121085	119121085	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	119121085	119121085	C	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.1486	p.L496I	0.990	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				186	0	0	63	27	30
TIMMDC1	0	genome.wustl.edu	37	3	119222404	119222404	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	119222404	119222404	G	A	SNP	TIMMDC1	ENST00000494664	human	ensembl	74_37	+1	known	missense	c.386	p.R129Q	0.870	pfam_Tim17/Tim22/Tim23/PMP24	pfam_Tim17/Tim22/Tim23/PMP24	-	no_errors	TIMMDC1	HGNC	ENSG00000113845				24	0	0	31	2	6.06061
ADPRH	0	genome.wustl.edu	37	3	119305260	119305260	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	119305260	119305260	C	A	SNP	ADPRH	ENST00000357003	human	ensembl	74_37	+1	known	missense	c.427	p.P143T	1.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	-	no_errors	ADPRH	HGNC	ENSG00000144843				247	0	0	162	41	20.197
CD86	0	genome.wustl.edu	37	3	121828232	121828232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	121828232	121828232	G	A	SNP	CD86	ENST00000330540	human	ensembl	74_37	+1	known	missense	c.824	p.R275Q	0.001	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD86	HGNC	ENSG00000114013				245	0	0	145	40	21.6216
SYN2	0	genome.wustl.edu	37	3	12187285	12187285	+	RNA	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	12187285	12187285	A	G	SNP	SYN2	ENST00000424884	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SYN2	HGNC	ENSG00000157152				230	0	0	62	28	31.1111
SEMA5B	0	genome.wustl.edu	37	3	122658273	122658273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	122658273	122658273	T	C	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	missense	c.635	p.Q212R	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				108	0	0	42	13	23.6364
MYLK	0	genome.wustl.edu	37	3	123452835	123452835	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	123452835	123452835	C	T	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	silent	c.1008	p.P336	0.000	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				164	0	0	76	25	24.7525
ZNF148	0	genome.wustl.edu	37	3	124951658	124951658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	124951658	124951658	G	A	SNP	ZNF148	ENST00000360647	human	ensembl	74_37	-1	known	missense	c.1912	p.P638S	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF148	HGNC	ENSG00000163848				311	0	0	242	66	21.4286
UROC1	0	genome.wustl.edu	37	3	126219563	126219563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	126219563	126219563	C	T	SNP	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	missense	c.1120	p.V374M	0.001	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				263	0	0	120	21	14.8936
UROC1	0	genome.wustl.edu	37	3	126226631	126226631	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	126226631	126226631	A	G	SNP	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	missense	c.556	p.S186P	1.000	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				188	1	0.529101	86	39	31.2
PLXNA1	0	genome.wustl.edu	37	3	126736719	126736719	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	126736719	126736719	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.3644	p.G1215E	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				83	0	0	32	16	33.3333
ABTB1	0	genome.wustl.edu	37	3	127396615	127396615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	127396615	127396615	G	A	SNP	ABTB1	ENST00000232744	human	ensembl	74_37	+1	known	missense	c.958	p.V320I	0.019	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB1	HGNC	ENSG00000114626				21	0	0	15	4	21.0526
RPN1	0	genome.wustl.edu	37	3	128344800	128344800	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	128344800	128344800	A	G	SNP	RPN1	ENST00000296255	human	ensembl	74_37	-1	known	missense	c.1192	p.Y398H	1.000	pfam_Ribophorin_I	pfam_Ribophorin_I	-	no_errors	RPN1	HGNC	ENSG00000163902				111	0	0	61	22	26.506
ACAD9	0	genome.wustl.edu	37	3	128603583	128603583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	128603583	128603583	G	A	SNP	ACAD9	ENST00000308982	human	ensembl	74_37	+1	known	missense	c.238	p.E80K	0.990	pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD9	HGNC	ENSG00000177646				162	0	0	77	26	25.2427
ACAD9	0	genome.wustl.edu	37	3	128612407	128612407	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	128612407	128612407	G	A	SNP	ACAD9	ENST00000308982	human	ensembl	74_37	+1	known	missense	c.254	p.R85Q	0.008	pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD9	HGNC	ENSG00000177646				69	0	0	40	13	24.5283
HMCES	0	genome.wustl.edu	37	3	129023513	129023513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	129023513	129023513	C	T	SNP	HMCES	ENST00000383463	human	ensembl	74_37	+1	known	missense	c.910	p.P304S	0.130	NULL	pfam_DUF159,superfamily_DUF159	-	no_errors	HMCES	HGNC	ENSG00000183624				115	0	0	89	37	29.3651
COL6A6	0	genome.wustl.edu	37	3	130284028	130284028	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	130284028	130284028	C	T	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	silent	c.852	p.S284	0.971	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				167	0	0	113	32	22.069
ATP2C1	0	genome.wustl.edu	37	3	130660493	130660493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	130660493	130660493	G	A	SNP	ATP2C1	ENST00000393221	human	ensembl	74_37	+1	known	missense	c.583	p.V195I	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C1	HGNC	ENSG00000017260				99	0	0	63	14	18.1818
ACAD11	0	genome.wustl.edu	37	3	132277865	132277865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	132277865	132277865	C	T	SNP	ACAD11	ENST00000264990	human	ensembl	74_37	-1	known	missense	c.2293	p.A765T	0.972	pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303				92	0	0	48	18	27.2727
ACKR4	0	genome.wustl.edu	37	3	132320091	132320091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	132320091	132320091	G	A	SNP	ACKR4	ENST00000249887	human	ensembl	74_37	+1	known	missense	c.850	p.A284T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCRL1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	ACKR4	HGNC	ENSG00000129048				264	1	0.377358	141	52	26.943
C3orf36	0	genome.wustl.edu	37	3	133647304	133647304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	133647304	133647304	C	T	SNP	C3orf36	ENST00000408895	human	ensembl	74_37	-1	known	missense	c.344	p.C115Y	0.001	NULL	NULL	-	no_errors	C3orf36	HGNC	ENSG00000221972				46	0	0	15	7	31.8182
DZIP1L	0	genome.wustl.edu	37	3	137822592	137822592	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	137822592	137822592	G	T	SNP	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	silent	c.222	p.R74	0.568	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163				78	0	0	32	8	20
MRPS22	0	genome.wustl.edu	37	3	139074583	139074583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	139074583	139074583	C	T	SNP	MRPS22	ENST00000310776	human	ensembl	74_37	+1	known	missense	c.938	p.S313L	1.000	NULL	pfam_Ribosomal_S22_mit	-	no_errors	MRPS22	HGNC	ENSG00000175110				99	0	0	44	8	15.3846
RASA2	0	genome.wustl.edu	37	3	141327408	141327408	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	141327408	141327408	C	T	SNP	RASA2	ENST00000452898	human	ensembl	74_37	+1	known	silent	c.2097	p.D699	0.001	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,prints_Znf_Btk_motif	pfam_RasGAP,pfam_C2_dom,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA2	HGNC	ENSG00000155903				127	0	0	81	22	21.3592
PAQR9	0	genome.wustl.edu	37	3	142681341	142681341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	142681341	142681341	G	A	SNP	PAQR9	ENST00000340634	human	ensembl	74_37	-1	known	missense	c.838	p.R280C	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR9	HGNC	ENSG00000188582				128	0	0	65	25	27.7778
ZIC4	0	genome.wustl.edu	37	3	147114080	147114080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	147114080	147114080	C	T	SNP	ZIC4	ENST00000525172	human	ensembl	74_37	-1	known	missense	c.397	p.A133T	0.786	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC4	HGNC	ENSG00000174963				26	0	0	24	9	27.2727
FGD5	0	genome.wustl.edu	37	3	14862557	14862557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	14862557	14862557	C	T	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	missense	c.1979	p.T660M	0.995	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783				124	0	0	40	20	33.3333
CP	0	genome.wustl.edu	37	3	148916275	148916275	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	148916275	148916275	T	C	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	missense	c.1592	p.D531G	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457				67	0	0	51	17	25
IGSF10	0	genome.wustl.edu	37	3	151161036	151161036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	151161036	151161036	C	T	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.5699	p.G1900E	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				140	0	0	90	29	24.3697
ANKRD28	0	genome.wustl.edu	37	3	15726870	15726870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	15726870	15726870	G	A	SNP	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	missense	c.2261	p.T754M	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560				206	0	0	86	41	32.2835
PPM1L	0	genome.wustl.edu	37	3	160786870	160786870	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	160786870	160786870	T	C	SNP	PPM1L	ENST00000498165	human	ensembl	74_37	+1	known	silent	c.1008	p.F336	0.995	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1L	HGNC	ENSG00000163590				112	0	0	59	23	28.0488
SI	0	genome.wustl.edu	37	3	164755741	164755741	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	164755741	164755741	A	G	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	silent	c.2373	p.L791	0.994	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				49	0	0	42	15	26.3158
PLCL2	0	genome.wustl.edu	37	3	17056204	17056204	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	17056204	17056204	C	A	SNP	PLCL2	ENST00000418129	human	ensembl	74_37	+1	known	missense	c.2441	p.A814E	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822				275	0	0	98	29	22.8346
FNDC3B	0	genome.wustl.edu	37	3	172115243	172115243	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	172115243	172115243	T	C	SNP	FNDC3B	ENST00000336824	human	ensembl	74_37	+1	known	missense	c.3593	p.L1198S	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420				83	0	0	45	20	30.7692
GHSR	0	genome.wustl.edu	37	3	172166194	172166194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	172166194	172166194	C	T	SNP	GHSR	ENST00000241256	human	ensembl	74_37	-1	known	missense	c.10	p.A4T	0.956	prints_GHS-R	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R,prints_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853				32	0	0	14	6	30
SOX2	0	genome.wustl.edu	37	3	181430415	181430415	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	181430415	181430415	G	A	SNP	SOX2	ENST00000325404	human	ensembl	74_37	+1	known	silent	c.267	p.P89	0.962	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_TF_SOX,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX2	HGNC	ENSG00000181449				97	0	0	26	15	36.5854
MCCC1	0	genome.wustl.edu	37	3	182735069	182735069	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	182735069	182735069	G	A	SNP	MCCC1	ENST00000265594	human	ensembl	74_37	-1	known	silent	c.2034	p.I678	0.913	pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_DUF201-type,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	MCCC1	HGNC	ENSG00000078070				249	0	0	123	58	32.0442
B3GNT5	0	genome.wustl.edu	37	3	183015012	183015012	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	183015012	183015012	G	A	SNP	B3GNT5	ENST00000462559	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	B3GNT5	HGNC	ENSG00000176597				25	0	0	15	10	40
KLHL6	0	genome.wustl.edu	37	3	183273230	183273230	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	183273230	183273230	A	G	SNP	KLHL6	ENST00000341319	human	ensembl	74_37	-1	known	missense	c.212	p.L71P	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578				227	0	0	100	52	34.2105
ABCC5	0	genome.wustl.edu	37	3	183667870	183667870	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	183667870	183667870	G	A	SNP	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	silent	c.2988	p.N996	0.723	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770				74	0	0	26	11	29.7297
HTR3E	0	genome.wustl.edu	37	3	183824131	183824131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	183824131	183824131	G	A	SNP	HTR3E	ENST00000335304	human	ensembl	74_37	+1	known	missense	c.1186	p.G396S	0.749	superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Neur_channel	-	no_errors	HTR3E	HGNC	ENSG00000186038				35	0	0	11	5	31.25
EIF4G1	0	genome.wustl.edu	37	3	184044406	184044406	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	184044406	184044406	C	A	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	missense	c.3335	p.P1112H	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				89	0	0	31	14	31.1111
TPRG1	0	genome.wustl.edu	37	3	189038562	189038562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	189038562	189038562	C	T	SNP	TPRG1	ENST00000345063	human	ensembl	74_37	+1	known	missense	c.781	p.R261C	1.000	NULL	pfam_Inositol_phosphatase	-	no_errors	TPRG1	HGNC	ENSG00000188001				62	0	0	28	8	22.2222
LEPREL1	0	genome.wustl.edu	37	3	189838054	189838054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	189838054	189838054	C	T	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	missense	c.467	p.R156Q	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				34	0	0	4	6	60
UTS2B	0	genome.wustl.edu	37	3	190995910	190995910	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	190995910	190995910	C	T	SNP	UTS2B	ENST00000446788	human	ensembl	74_37	-1	known	silent	c.153	p.L51	0.013	NULL	NULL	-	no_errors	UTS2B	HGNC	ENSG00000188958				34	0	0	14	4	22.2222
KCNH8	0	genome.wustl.edu	37	3	19389422	19389422	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	19389422	19389422	T	C	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.776	p.V259A	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				167	1	0.595238	72	36	33.3333
MUC4	0	genome.wustl.edu	37	3	195498560	195498560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	195498560	195498560	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.13205	p.A4402V	1.000	smart_Nidogen_extracell_dom	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				108	0	0	25	18	41.8605
RNF168	0	genome.wustl.edu	37	3	196199488	196199488	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	196199488	196199488	G	A	SNP	RNF168	ENST00000318037	human	ensembl	74_37	-1	known	silent	c.918	p.A306	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF168	HGNC	ENSG00000163961				87	0	0	54	17	23.9437
MFI2	0	genome.wustl.edu	37	3	196746551	196746551	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	196746551	196746551	G	A	SNP	MFI2	ENST00000296351	human	ensembl	74_37	-1	known	silent	c.834	p.P278	0.000	smart_Transferrin_fam	pfam_Transferrin_fam,smart_Transferrin_fam,prints_Transferrin_fam	-	no_errors	MFI2	HGNC	ENSG00000163975				251	0	0	121	10	7.63359
KIAA0226	0	genome.wustl.edu	37	3	197444928	197444928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	197444928	197444928	C	T	SNP	KIAA0226	ENST00000296343	human	ensembl	74_37	-1	known	missense	c.139	p.V47I	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016				100	0	0	44	24	35.2941
LRRC3B	0	genome.wustl.edu	37	3	26751645	26751645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	26751645	26751645	C	T	SNP	LRRC3B	ENST00000396641	human	ensembl	74_37	+1	known	missense	c.482	p.A161V	0.996	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC3B	HGNC	ENSG00000179796				54	0	0	32	7	17.9487
NEK10	0	genome.wustl.edu	37	3	27152802	27152802	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	27152802	27152802	G	T	SNP	NEK10	ENST00000383771	human	ensembl	74_37	-1	known	silent	c.1386	p.S462	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK10	HGNC	ENSG00000163491				104	0	0	51	17	25
SLC4A7	0	genome.wustl.edu	37	3	27436549	27436549	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	27436549	27436549	T	G	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	missense	c.2761	p.T921P	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				114	0	0	67	23	25.5556
SLC4A7	0	genome.wustl.edu	37	3	27460079	27460079	+	Silent	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	27460079	27460079	G	C	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	silent	c.1557	p.L519	0.985	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				61	0	0	42	10	19.2308
SLC4A7	0	genome.wustl.edu	37	3	27465559	27465559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	27465559	27465559	C	T	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	missense	c.1235	p.S412N	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				107	0	0	73	13	15.1163
GLB1	0	genome.wustl.edu	37	3	33110382	33110382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	33110382	33110382	C	T	SNP	GLB1	ENST00000445488	human	ensembl	74_37	-1	known	missense	c.470	p.R157Q	0.985	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1	HGNC	ENSG00000170266				169	0	0	69	20	22.4719
SUSD5	0	genome.wustl.edu	37	3	33255514	33255514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	33255514	33255514	C	T	SNP	SUSD5	ENST00000309558	human	ensembl	74_37	-1	known	missense	c.196	p.A66T	0.985	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Link,pfscan_Link,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD5	HGNC	ENSG00000173705				95	0	0	45	15	25
DCLK3	0	genome.wustl.edu	37	3	36779387	36779387	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	36779387	36779387	T	C	SNP	DCLK3	ENST00000416516	human	ensembl	74_37	-1	known	missense	c.764	p.E255G	0.881	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK3	HGNC	ENSG00000163673				206	0	0	126	48	27.5862
ITGA9	0	genome.wustl.edu	37	3	37670704	37670704	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	37670704	37670704	G	A	SNP	ITGA9	ENST00000264741	human	ensembl	74_37	+1	known	silent	c.1716	p.P572	0.048	pfam_Integrin_alpha-2,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668				125	0	0	48	13	21.3115
ACAA1	0	genome.wustl.edu	37	3	38170828	38170828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	38170828	38170828	C	T	SNP	ACAA1	ENST00000411549	human	ensembl	74_37	-1	known	missense	c.455	p.R152H	0.434	NULL	pfam_Thiolase_N,superfamily_Thiolase-like	-	no_errors	ACAA1	HGNC	ENSG00000060971				99	0	0	48	11	18.6441
ACVR2B	0	genome.wustl.edu	37	3	38523799	38523799	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	38523799	38523799	G	A	SNP	ACVR2B	ENST00000352511	human	ensembl	74_37	+1	known	silent	c.1185	p.E395	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2B	HGNC	ENSG00000114739				40	0	0	31	10	24.3902
SCN5A	0	genome.wustl.edu	37	3	38592894	38592894	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	38592894	38592894	G	T	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.4969	p.L1657I	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				253	0	0	121	25	17.1233
SCN5A	0	genome.wustl.edu	37	3	38671808	38671808	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	38671808	38671808	A	G	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.386	p.V129A	0.998	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				124	0	0	55	12	17.9104
SCN11A	0	genome.wustl.edu	37	3	38924806	38924806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	38924806	38924806	C	T	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	missense	c.3137	p.R1046Q	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				106	0	0	74	15	16.8539
XIRP1	0	genome.wustl.edu	37	3	39226595	39226595	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	39226595	39226595	G	A	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	nonsense	c.4342	p.Q1448*	0.033	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				207	0	0	103	21	16.9355
RPSA	0	genome.wustl.edu	37	3	39453198	39453198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	39453198	39453198	G	A	SNP	RPSA	ENST00000301821	human	ensembl	74_37	+1	known	missense	c.557	p.R186H	1.000	superfamily_Ribosomal_S2_flav_dom,tigrfam_Ribosomal_S2_euk/arc	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2,tigrfam_Ribosomal_S2_euk/arc	-	no_errors	RPSA	HGNC	ENSG00000168028				83	0	0	63	17	21.25
ACKR2	0	genome.wustl.edu	37	3	42906947	42906947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	42906947	42906947	G	A	SNP	ACKR2	ENST00000273145	human	ensembl	74_37	+1	known	missense	c.953	p.R318H	0.000	prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_ATII_rcpt,prints_Chemokine_CXCR4	-	no_errors	ACKR2	HGNC	ENSG00000144648				228	0	0	80	36	31.0345
ZNF35	0	genome.wustl.edu	37	3	44692631	44692631	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	44692631	44692631	A	G	SNP	ZNF35	ENST00000396056	human	ensembl	74_37	+1	known	silent	c.72	p.E24	0.920	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981				83	0	0	39	21	35
KIF15	0	genome.wustl.edu	37	3	44893702	44893702	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	44893702	44893702	G	C	SNP	KIF15	ENST00000326047	human	ensembl	74_37	+1	known	missense	c.3975	p.E1325D	0.901	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808				73	0	0	35	11	23.913
ALS2CL	0	genome.wustl.edu	37	3	46722846	46722846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	46722846	46722846	G	A	SNP	ALS2CL	ENST00000434140	human	ensembl	74_37	-1	known	missense	c.1322	p.T441M	0.968	NULL	pfam_MORN,superfamily_DH-domain,smart_MORN	-	no_errors	ALS2CL	HGNC	ENSG00000178038				193	0	0	67	42	38.5321
NBEAL2	0	genome.wustl.edu	37	3	47049819	47049819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	47049819	47049819	C	T	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.7766	p.A2589V	0.989	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				23	0	0	11	9	45
PTPN23	0	genome.wustl.edu	37	3	47449901	47449901	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	47449901	47449901	C	T	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	silent	c.1251	p.I417	1.000	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				161	0	0	46	16	25.8065
COL7A1	0	genome.wustl.edu	37	3	48608692	48608692	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	48608692	48608692	C	T	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.7088	p.G2363E	0.998	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				70	0	0	24	7	22.5806
COL7A1	0	genome.wustl.edu	37	3	48630567	48630567	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	48630567	48630567	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.650	p.T217M	0.999	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				96	0	0	26	17	39.5349
CELSR3	0	genome.wustl.edu	37	3	48694579	48694579	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	48694579	48694579	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	silent	c.3951	p.N1317	0.954	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				104	0	0	24	13	35.1351
IMPDH2	0	genome.wustl.edu	37	3	49064248	49064248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	49064248	49064248	G	A	SNP	IMPDH2	ENST00000326739	human	ensembl	74_37	-1	known	missense	c.691	p.R231W	1.000	pfam_IMP_DH_GMPRt,pfam_2Npropane_dOase,smart_CBS_dom,pirsf_IMP_DH,tigrfam_IMP_DH	pfam_IMP_DH_GMPRt,pfam_CBS_dom,pfam_2Npropane_dOase,pfam_FMN-dep_DH,pfam_NanE,smart_CBS_dom,pirsf_IMP_DH,tigrfam_IMP_DH	-	no_errors	IMPDH2	HGNC	ENSG00000178035				306	0	0	107	41	27.7027
BSN	0	genome.wustl.edu	37	3	49694041	49694041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	49694041	49694041	G	A	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.7052	p.R2351Q	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				28	0	0	13	4	23.5294
MST1	0	genome.wustl.edu	37	3	49724498	49724498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	49724498	49724498	C	T	SNP	MST1	ENST00000449682	human	ensembl	74_37	-1	known	missense	c.610	p.A204T	0.003	superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531				176	1	0.564972	40	13	24.5283
CDHR4	0	genome.wustl.edu	37	3	49836222	49836222	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	49836222	49836222	C	A	SNP	CDHR4	ENST00000487256	human	ensembl	74_37	-1	novel	missense	c.532	p.G178W	0.003	NULL	NULL	-	no_errors	CDHR4	HGNC	ENSG00000187492				32	0	0	9	4	30.7692
CDHR4	0	genome.wustl.edu	37	3	49836868	49836868	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	49836868	49836868	G	T	SNP	CDHR4	ENST00000412678	human	ensembl	74_37	-1	known	missense	c.52	p.L18I	0.002	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR4	HGNC	ENSG00000187492				17	0	0	8	3	27.2727
SLC38A3	0	genome.wustl.edu	37	3	50253036	50253036	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	50253036	50253036	C	T	SNP	SLC38A3	ENST00000414604	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	SLC38A3	HGNC	ENSG00000188338				100	0	0	26	11	29.7297
HYAL2	0	genome.wustl.edu	37	3	50355798	50355798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	50355798	50355798	C	T	SNP	HYAL2	ENST00000357750	human	ensembl	74_37	-1	known	missense	c.1184	p.R395H	1.000	pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL2	HGNC	ENSG00000068001				177	0	0	47	12	20.339
GRM2	0	genome.wustl.edu	37	3	51749521	51749521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	51749521	51749521	G	A	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	missense	c.1732	p.G578S	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				137	0	0	47	14	22.9508
DNAH1	0	genome.wustl.edu	37	3	52406352	52406352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	52406352	52406352	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.6776	p.R2259H	0.946	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				99	0	0	21	20	48.7805
BAP1	0	genome.wustl.edu	37	3	52442054	52442054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	52442054	52442054	C	T	SNP	BAP1	ENST00000460680	human	ensembl	74_37	-1	known	missense	c.295	p.V99M	1.000	pfam_Peptidase_C12,prints_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930				39	0	0	15	7	31.8182
ITIH4	0	genome.wustl.edu	37	3	52861195	52861195	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	52861195	52861195	G	T	SNP	ITIH4	ENST00000266041	human	ensembl	74_37	-1	known	silent	c.270	p.T90	0.875	pfam_VIT,smart_VIT	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH4	HGNC	ENSG00000055955				135	0	0	45	12	21.0526
CHDH	0	genome.wustl.edu	37	3	53852023	53852023	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	53852023	53852023	G	A	SNP	CHDH	ENST00000315251	human	ensembl	74_37	-1	known	silent	c.1566	p.S522	0.070	pfam_GMC_OxRtase_C,pirsf_GMC_OxRdtase	pfam_GMC_OxRdtase_N,pfam_GMC_OxRtase_C,pirsf_GMC_OxRdtase	-	no_errors	CHDH	HGNC	ENSG00000016391				249	1	0.4	76	28	26.9231
CACNA2D3	0	genome.wustl.edu	37	3	54933814	54933814	+	Splice_Site	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	54933814	54933814	G	T	SNP	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	splice_site	c.2369-1	e27-1	0.999	-	-	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				25	0	0	13	5	27.7778
ERC2	0	genome.wustl.edu	37	3	55733484	55733484	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	55733484	55733484	G	A	SNP	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	silent	c.2769	p.Y923	1.000	NULL	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672				396	0	0	119	51	30
ERC2	0	genome.wustl.edu	37	3	55733486	55733486	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	55733486	55733486	A	G	SNP	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	missense	c.2767	p.Y923H	0.624	NULL	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672				401	0	0	119	49	29.1667
ERC2	0	genome.wustl.edu	37	3	55733493	55733493	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	55733493	55733493	A	G	SNP	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	silent	c.2760	p.H920	0.942	NULL	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672				393	0	0	114	55	32.5444
PRICKLE2	0	genome.wustl.edu	37	3	64138947	64138947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	64138947	64138947	C	T	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	missense	c.698	p.R233H	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637				277	0	0	82	38	31.6667
FRMD4B	0	genome.wustl.edu	37	3	69299230	69299230	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	69299230	69299230	G	A	SNP	FRMD4B	ENST00000398540	human	ensembl	74_37	-1	known	silent	c.522	p.S174	0.446	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	pfam_DUF3338,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4B	HGNC	ENSG00000114541				364	1	0.273973	185	44	19.214
MITF	0	genome.wustl.edu	37	3	70005622	70005622	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	70005622	70005622	A	C	SNP	MITF	ENST00000448226	human	ensembl	74_37	+1	known	missense	c.972	p.R324S	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MITF	HGNC	ENSG00000187098				82	0	0	39	12	23.5294
PDZRN3	0	genome.wustl.edu	37	3	73432578	73432578	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	73432578	73432578	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	missense	c.3139	p.G1047S	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				330	0	0	212	70	24.8227
OXTR	0	genome.wustl.edu	37	3	8809680	8809680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	8809680	8809680	C	T	SNP	OXTR	ENST00000316793	human	ensembl	74_37	-1	known	missense	c.194	p.R65H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Oxytocn_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Oxytocn_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OXTR	HGNC	ENSG00000180914				28	0	0	8	3	27.2727
PROS1	0	genome.wustl.edu	37	3	93619652	93619652	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	93619652	93619652	A	G	SNP	PROS1	ENST00000394236	human	ensembl	74_37	-1	known	silent	c.723	p.C241	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	PROS1	HGNC	ENSG00000184500				139	0	0	72	15	17.2414
OR5H15	0	genome.wustl.edu	37	3	97887908	97887908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	97887908	97887908	G	A	SNP	OR5H15	ENST00000356526	human	ensembl	74_37	+1	known	missense	c.365	p.R122H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H15	HGNC	ENSG00000233412				200	0	0	158	53	25.1185
TTLL3	0	genome.wustl.edu	37	3	9870735	9870735	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	9870735	9870735	A	C	SNP	TTLL3	ENST00000426895	human	ensembl	74_37	+1	known	missense	c.1639	p.S547R	0.930	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL3	HGNC	ENSG00000214021				97	0	0	40	16	28.5714
FILIP1L	0	genome.wustl.edu	37	3	99567819	99567819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	99567819	99567819	G	A	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	missense	c.2701	p.P901S	1.000	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				335	0	0	268	72	21.1765
FILIP1L	0	genome.wustl.edu	37	3	99569276	99569276	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	99569276	99569276	A	G	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	missense	c.1244	p.L415P	0.026	superfamily_Prefoldin	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				200	0	0	157	44	21.8905
IL17RC	0	genome.wustl.edu	37	3	9958929	9958929	+	RNA	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	9958929	9958929	T	C	SNP	IL17RC	ENST00000498214	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IL17RC	HGNC	ENSG00000163702				14	0	0	8	2	20
MANBA	0	genome.wustl.edu	37	4	103595217	103595217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	103595217	103595217	C	T	SNP	MANBA	ENST00000226578	human	ensembl	74_37	-1	known	missense	c.971	p.R324K	1.000	superfamily_Glyco_hydro_2_Ig-like	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323				89	0	0	33	11	25
TACR3	0	genome.wustl.edu	37	4	104512789	104512789	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	104512789	104512789	G	A	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	missense	c.940	p.P314S	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				64	0	0	19	18	48.6486
HADH	0	genome.wustl.edu	37	4	108935649	108935649	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	108935649	108935649	C	T	SNP	HADH	ENST00000403312	human	ensembl	74_37	+1	known	silent	c.501	p.S167	0.026	pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_AlaDH/PNT_NAD(H)-bd,pfam_UDP-Glc/GDP-Man_DH_N	pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,pfam_AlaDH/PNT_NAD(H)-bd,pfam_UDP-Glc/GDP-Man_DH_N,superfamily_6-PGluconate_DH_C-like	-	no_errors	HADH	HGNC	ENSG00000138796				239	0	0	85	10	10.5263
ALPK1	0	genome.wustl.edu	37	4	113333097	113333097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	113333097	113333097	G	A	SNP	ALPK1	ENST00000177648	human	ensembl	74_37	+1	known	missense	c.391	p.A131T	1.000	NULL	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331				143	0	0	26	4	13.3333
HS3ST1	0	genome.wustl.edu	37	4	11400846	11400846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	11400846	11400846	G	A	SNP	HS3ST1	ENST00000002596	human	ensembl	74_37	-1	known	missense	c.784	p.R262W	0.999	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST1	HGNC	ENSG00000002587				136	0	0	76	35	31.5315
NDST4	0	genome.wustl.edu	37	4	115998005	115998005	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	115998005	115998005	A	G	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	missense	c.188	p.M63T	0.149	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653				99	0	0	26	23	46.9388
BBS12	0	genome.wustl.edu	37	4	123663688	123663688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	123663688	123663688	G	A	SNP	BBS12	ENST00000314218	human	ensembl	74_37	+1	known	missense	c.641	p.R214Q	0.000	superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	BBS12	HGNC	ENSG00000181004				140	0	0	37	39	51.3158
PCDH10	0	genome.wustl.edu	37	4	134072881	134072881	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	134072881	134072881	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.1586	p.R529H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				192	0	0	49	34	40.9639
NKX3-2	0	genome.wustl.edu	37	4	13545732	13545732	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	13545732	13545732	T	C	SNP	NKX3-2	ENST00000382438	human	ensembl	74_37	-1	known	missense	c.307	p.S103G	0.400	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX3-2	HGNC	ENSG00000109705				23	0	0	6	3	33.3333
CRIPAK	0	genome.wustl.edu	37	4	1389215	1389215	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	1389215	1389215	C	T	SNP	CRIPAK	ENST00000324803	human	ensembl	74_37	+1	known	nonsense	c.916	p.R306*	0.023	NULL	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979				548	2	0.363636	201	28	12.2271
TIGD4	0	genome.wustl.edu	37	4	153691554	153691554	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	153691554	153691554	G	A	SNP	TIGD4	ENST00000304337	human	ensembl	74_37	-1	known	silent	c.603	p.G201	0.464	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,pfam_Centromere_CenpB_dimerisation,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD4	HGNC	ENSG00000169989				191	0	0	58	43	42.5743
C1QTNF7	0	genome.wustl.edu	37	4	15444274	15444274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	15444274	15444274	C	T	SNP	C1QTNF7	ENST00000429690	human	ensembl	74_37	+1	known	missense	c.721	p.P241S	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF7	HGNC	ENSG00000163145				183	0	0	83	37	30.8333
CC2D2A	0	genome.wustl.edu	37	4	15572057	15572057	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	15572057	15572057	A	G	SNP	CC2D2A	ENST00000413206	human	ensembl	74_37	+1	known	missense	c.3532	p.I1178V	0.996	superfamily_C2_dom,smart_C2_dom	superfamily_C2_dom,smart_C2_dom	-	no_errors	CC2D2A	HGNC	ENSG00000048342				30	0	0	12	4	25
FSTL5	0	genome.wustl.edu	37	4	162459350	162459350	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	162459350	162459350	G	T	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.1280	p.S427Y	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				339	0	0	80	52	39.3939
NPY1R	0	genome.wustl.edu	37	4	164247331	164247331	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	164247331	164247331	C	T	SNP	NPY1R	ENST00000296533	human	ensembl	74_37	-1	known	missense	c.376	p.V126M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_7TM,prints_NPY1_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY1R	HGNC	ENSG00000164128				143	0	0	38	40	51.2821
SAP30	0	genome.wustl.edu	37	4	174294658	174294658	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	174294658	174294658	A	G	SNP	SAP30	ENST00000296504	human	ensembl	74_37	+1	known	missense	c.433	p.T145A	1.000	NULL	NULL	-	no_errors	SAP30	HGNC	ENSG00000164105				210	2	0.943396	47	49	51.0417
WDR17	0	genome.wustl.edu	37	4	177082120	177082120	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	177082120	177082120	A	G	SNP	WDR17	ENST00000280190	human	ensembl	74_37	+1	known	missense	c.2789	p.Y930C	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627				80	0	0	16	20	55.5556
WDR17	0	genome.wustl.edu	37	4	177098716	177098716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	177098716	177098716	G	A	SNP	WDR17	ENST00000280190	human	ensembl	74_37	+1	known	missense	c.3760	p.G1254R	0.953	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627				136	0	0	44	31	41.3333
DCAF16	0	genome.wustl.edu	37	4	17805513	17805513	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	17805513	17805513	G	A	SNP	DCAF16	ENST00000382247	human	ensembl	74_37	-1	known	silent	c.252	p.S84	0.804	NULL	NULL	-	no_errors	DCAF16	HGNC	ENSG00000163257				213	0	0	79	23	22.549
FAT1	0	genome.wustl.edu	37	4	187518870	187518870	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	187518870	187518870	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.12334	p.V4112I	1.000	pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				69	0	0	15	7	31.8182
SLIT2	0	genome.wustl.edu	37	4	20525728	20525728	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	20525728	20525728	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.1366	p.R456C	1.000	pfam_Cys-rich_flank_reg_C,smart_Cys-rich_flank_reg_C	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				331	0	0	98	34	25.7576
POLN	0	genome.wustl.edu	37	4	2181141	2181141	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	2181141	2181141	G	T	SNP	POLN	ENST00000382865	human	ensembl	74_37	-1	known	missense	c.1073	p.P358H	0.989	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997				82	0	0	35	22	38.5965
POLN	0	genome.wustl.edu	37	4	2230912	2230912	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	2230912	2230912	G	A	SNP	POLN	ENST00000382865	human	ensembl	74_37	-1	known	missense	c.47	p.P16L	0.509	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997				139	0	0	88	35	28.4553
SEL1L3	0	genome.wustl.edu	37	4	25806253	25806253	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	25806253	25806253	C	T	SNP	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	silent	c.1686	p.T562	1.000	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490				61	0	0	23	11	32.3529
RGS12	0	genome.wustl.edu	37	4	3318853	3318853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	3318853	3318853	C	T	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	missense	c.956	p.T319M	0.116	smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				227	0	0	92	25	21.3675
TBC1D1	0	genome.wustl.edu	37	4	38138782	38138782	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	38138782	38138782	T	C	SNP	TBC1D1	ENST00000261439	human	ensembl	74_37	+1	known	silent	c.3333	p.L1111	0.015	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882				146	0	0	48	19	28.3582
RFC1	0	genome.wustl.edu	37	4	39318611	39318611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	39318611	39318611	C	T	SNP	RFC1	ENST00000381897	human	ensembl	74_37	-1	known	missense	c.1127	p.R376H	1.000	superfamily_P-loop_NTPase,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_P-loop_NTPase,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928				90	0	0	35	16	31.3725
KLB	0	genome.wustl.edu	37	4	39408649	39408649	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	39408649	39408649	G	T	SNP	KLB	ENST00000257408	human	ensembl	74_37	+1	known	missense	c.80	p.R27M	0.033	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KLB	HGNC	ENSG00000134962				92	0	0	47	21	30.8824
DCAF4L1	0	genome.wustl.edu	37	4	41984733	41984733	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	41984733	41984733	C	T	SNP	DCAF4L1	ENST00000333141	human	ensembl	74_37	+1	known	silent	c.924	p.Y308	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L1	HGNC	ENSG00000182308				165	0	0	65	30	31.5789
ATP8A1	0	genome.wustl.edu	37	4	42414995	42414995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	42414995	42414995	C	T	SNP	ATP8A1	ENST00000381668	human	ensembl	74_37	-1	known	missense	c.3433	p.V1145I	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A1	HGNC	ENSG00000124406				68	0	0	27	11	28.9474
GABRA4	0	genome.wustl.edu	37	4	46967009	46967009	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	46967009	46967009	T	G	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	missense	c.1112	p.K371T	0.810	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAa4_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				146	0	0	55	10	15.3846
GABRA4	0	genome.wustl.edu	37	4	46995418	46995418	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	46995418	46995418	G	A	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	silent	c.24	p.P8	0.994	NULL	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				252	0	0	67	25	27.1739
CORIN	0	genome.wustl.edu	37	4	47663848	47663848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	47663848	47663848	G	A	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	missense	c.1615	p.R539C	1.000	pirsf_Peptidase_S1A_corin,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				57	0	0	28	13	31.7073
CWH43	0	genome.wustl.edu	37	4	49063827	49063827	+	Splice_Site	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	49063827	49063827	A	T	SNP	CWH43	ENST00000226432	human	ensembl	74_37	+1	known	splice_site	c.2022-2	e16-2	0.993	-	-	-	no_errors	CWH43	HGNC	ENSG00000109182				50	0	0	16	12	42.8571
SPATA18	0	genome.wustl.edu	37	4	52938115	52938115	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	52938115	52938115	G	A	SNP	SPATA18	ENST00000295213	human	ensembl	74_37	+1	known	missense	c.551	p.R184H	0.969	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071				106	0	0	17	10	37.037
STK32B	0	genome.wustl.edu	37	4	5461854	5461854	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	5461854	5461854	C	T	SNP	STK32B	ENST00000282908	human	ensembl	74_37	+1	known	missense	c.808	p.R270C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK32B	HGNC	ENSG00000152953				105	0	0	42	15	26.3158
EVC2	0	genome.wustl.edu	37	4	5624499	5624499	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	5624499	5624499	T	C	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	missense	c.2266	p.N756D	0.744	NULL	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				91	0	0	38	10	20.8333
POLR2B	0	genome.wustl.edu	37	4	57897132	57897132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	57897132	57897132	C	T	SNP	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	missense	c.3503	p.A1168V	1.000	pfam_RNA_pol_Rpb2_7	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				82	0	0	23	12	34.2857
JAKMIP1	0	genome.wustl.edu	37	4	6043924	6043924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	6043924	6043924	C	T	SNP	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	missense	c.2059	p.A687T	0.999	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				129	1	0.769231	58	11	15.942
PDE6B	0	genome.wustl.edu	37	4	656917	656917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	656917	656917	G	A	SNP	PDE6B	ENST00000496514	human	ensembl	74_37	+1	known	missense	c.1861	p.G621S	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256				97	0	0	31	12	27.907
MAN2B2	0	genome.wustl.edu	37	4	6606969	6606969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	6606969	6606969	C	T	SNP	MAN2B2	ENST00000285599	human	ensembl	74_37	+1	known	missense	c.1727	p.A576V	0.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288				107	0	0	52	24	31.5789
MUC7	0	genome.wustl.edu	37	4	71347244	71347244	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	71347244	71347244	A	G	SNP	MUC7	ENST00000304887	human	ensembl	74_37	+1	known	silent	c.783	p.P261	0.042	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195				424	0	0	104	24	18.75
AMBN	0	genome.wustl.edu	37	4	71472425	71472425	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	71472425	71472425	C	T	SNP	AMBN	ENST00000322937	human	ensembl	74_37	+1	known	missense	c.1322	p.A441V	0.000	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522				95	0	0	18	12	40
USO1	0	genome.wustl.edu	37	4	76695832	76695832	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	76695832	76695832	G	A	SNP	USO1	ENST00000538159	human	ensembl	74_37	+1	known	missense	c.565	p.V189I	0.999	superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768				102	0	0	21	16	43.2432
C4orf36	0	genome.wustl.edu	37	4	87808944	87808944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	87808944	87808944	G	A	SNP	C4orf36	ENST00000295898	human	ensembl	74_37	-1	known	missense	c.323	p.A108V	0.001	NULL	NULL	-	no_errors	C4orf36	HGNC	ENSG00000163633				106	0	0	22	20	47.619
ROPN1L	0	genome.wustl.edu	37	5	10461310	10461310	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	10461310	10461310	G	A	SNP	ROPN1L	ENST00000274134	human	ensembl	74_37	+1	known	silent	c.432	p.A144	0.242	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1L	HGNC	ENSG00000145491				148	0	0	50	20	28.5714
FBXL17	0	genome.wustl.edu	37	5	107559928	107559928	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	107559928	107559928	A	G	SNP	FBXL17	ENST00000542267	human	ensembl	74_37	-1	known	missense	c.1508	p.V503A	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL17	HGNC	ENSG00000145743				42	0	0	33	16	32.6531
CTNND2	0	genome.wustl.edu	37	5	10973727	10973727	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	10973727	10973727	G	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	silent	c.3516	p.F1172	0.996	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				141	0	0	37	17	31.4815
SLC25A46	0	genome.wustl.edu	37	5	110097004	110097004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	110097004	110097004	C	T	SNP	SLC25A46	ENST00000355943	human	ensembl	74_37	+1	known	missense	c.779	p.P260L	1.000	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A46	HGNC	ENSG00000164209				156	0	0	80	45	36
CTNND2	0	genome.wustl.edu	37	5	11111073	11111073	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	11111073	11111073	G	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.2360	p.T787M	0.999	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				362	0	0	164	55	25.1142
EPB41L4A	0	genome.wustl.edu	37	5	111506045	111506045	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	111506045	111506045	G	A	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	silent	c.1692	p.S564	0.935	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				72	0	0	30	14	31.8182
REEP5	0	genome.wustl.edu	37	5	112222807	112222807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	112222807	112222807	C	T	SNP	REEP5	ENST00000379638	human	ensembl	74_37	-1	known	missense	c.425	p.R142H	1.000	pfam_TB2_DP1_HVA22	pfam_TB2_DP1_HVA22	-	no_errors	REEP5	HGNC	ENSG00000129625				89	0	0	43	22	33.8462
CTNND2	0	genome.wustl.edu	37	5	11364912	11364912	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	11364912	11364912	A	T	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.1268	p.I423N	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				110	0	0	24	16	40
CDO1	0	genome.wustl.edu	37	5	115142176	115142176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	115142176	115142176	G	A	SNP	CDO1	ENST00000250535	human	ensembl	74_37	-1	known	missense	c.443	p.T148M	0.995	pfam_Cys_dOase_I,pfam_Cysteamine_dioxygenase,superfamily_RmlC_Cupin	pfam_Cys_dOase_I,pfam_Cysteamine_dioxygenase,superfamily_RmlC_Cupin	-	no_errors	CDO1	HGNC	ENSG00000129596				85	0	0	43	14	24.5614
SEMA6A	0	genome.wustl.edu	37	5	115783003	115783003	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	115783003	115783003	G	T	SNP	SEMA6A	ENST00000257414	human	ensembl	74_37	-1	known	missense	c.2450	p.P817H	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6A	HGNC	ENSG00000092421				108	0	0	52	24	31.5789
CTXN3	0	genome.wustl.edu	37	5	126993261	126993261	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	126993261	126993261	C	T	SNP	CTXN3	ENST00000379445	human	ensembl	74_37	+1	known	silent	c.48	p.N16	0.001	pfam_Cortexin	pfam_Cortexin	-	no_errors	CTXN3	HGNC	ENSG00000205279				92	0	0	49	21	30
FBN2	0	genome.wustl.edu	37	5	127622436	127622436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	127622436	127622436	C	T	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.6986	p.R2329Q	0.971	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				90	0	0	40	12	23.0769
FBN2	0	genome.wustl.edu	37	5	127624227	127624227	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	127624227	127624227	G	A	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	silent	c.6660	p.G2220	0.994	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				123	0	0	45	22	32.8358
FBN2	0	genome.wustl.edu	37	5	127873117	127873117	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	127873117	127873117	C	T	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	silent	c.180	p.A60	0.000	pirsf_FBN	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				25	0	0	11	4	26.6667
FNIP1	0	genome.wustl.edu	37	5	131042192	131042192	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	131042192	131042192	A	C	SNP	FNIP1	ENST00000510461	human	ensembl	74_37	-1	known	missense	c.826	p.S276A	1.000	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128				124	0	0	32	19	37.2549
ACSL6	0	genome.wustl.edu	37	5	131324516	131324516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	131324516	131324516	G	A	SNP	ACSL6	ENST00000296869	human	ensembl	74_37	-1	known	missense	c.634	p.R212C	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398				259	0	0	44	22	33.3333
SLC22A5	0	genome.wustl.edu	37	5	131719977	131719977	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	131719977	131719977	G	T	SNP	SLC22A5	ENST00000435065	human	ensembl	74_37	+1	known	silent	c.708	p.V236	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A5	HGNC	ENSG00000197375				146	0	0	52	24	31.5789
AFF4	0	genome.wustl.edu	37	5	132238133	132238133	+	Splice_Site	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	132238133	132238133	C	T	SNP	AFF4	ENST00000265343	human	ensembl	74_37	-1	known	splice_site	c.1133+1	e6+1	1.000	-	-	-	no_errors	AFF4	HGNC	ENSG00000072364				95	0	0	33	4	10.8108
C5orf24	0	genome.wustl.edu	37	5	134190633	134190633	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	134190633	134190633	C	T	SNP	C5orf24	ENST00000338051	human	ensembl	74_37	+1	known	missense	c.43	p.P15S	1.000	NULL	NULL	-	no_errors	C5orf24	HGNC	ENSG00000181904				268	0	0	116	54	31.7647
H2AFY	0	genome.wustl.edu	37	5	134670542	134670542	+	RNA	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	134670542	134670542	T	C	SNP	H2AFY	ENST00000360597	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	H2AFY	HGNC	ENSG00000113648				34	0	0	14	7	33.3333
CTNNA1	0	genome.wustl.edu	37	5	138160275	138160275	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	138160275	138160275	G	T	SNP	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	missense	c.645	p.Q215H	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115				71	0	0	39	12	23.5294
PCDHA10	0	genome.wustl.edu	37	5	140237279	140237279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140237279	140237279	C	T	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	missense	c.1646	p.T549M	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120				194	0	0	52	27	34.1772
PCDHA11	0	genome.wustl.edu	37	5	140248828	140248828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140248828	140248828	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.140	p.R47H	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				202	1	0.492611	92	34	26.9841
PCDHA12	0	genome.wustl.edu	37	5	140256906	140256906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140256906	140256906	G	A	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	missense	c.1849	p.G617S	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				169	0	0	45	17	27.4194
PCDHB3	0	genome.wustl.edu	37	5	140481708	140481708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140481708	140481708	C	T	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1475	p.P492L	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				370	0	0	102	38	27.1429
PCDHB5	0	genome.wustl.edu	37	5	140516775	140516775	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140516775	140516775	A	C	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.1759	p.K587Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				211	0	0	55	22	28.5714
PCDHB5	0	genome.wustl.edu	37	5	140517298	140517298	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140517298	140517298	G	T	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.2282	p.G761V	0.004	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				395	0	0	149	15	9.14634
ENSG00000255622	0	genome.wustl.edu	37	5	140536926	140536926	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140536926	140536926	C	T	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	silent	c.1350	p.P450	0.028	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622				360	0	0	137	8	5.51724
PCDHB7	0	genome.wustl.edu	37	5	140553940	140553940	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140553940	140553940	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	silent	c.1524	p.A508	0.002	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				323	0	0	97	45	31.6901
PCDHB8	0	genome.wustl.edu	37	5	140559171	140559171	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140559171	140559171	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.1556	p.S519L	0.841	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				265	0	0	101	40	28.3688
PCDHB16	0	genome.wustl.edu	37	5	140563197	140563197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140563197	140563197	C	T	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.1063	p.P355S	0.011	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				177	0	0	92	6	6.12245
PCDHB10	0	genome.wustl.edu	37	5	140573214	140573214	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140573214	140573214	G	A	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	+1	known	silent	c.1089	p.T363	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324				128	0	0	41	34	45.3333
PCDHB12	0	genome.wustl.edu	37	5	140590223	140590223	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140590223	140590223	C	T	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	missense	c.1744	p.P582S	0.263	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				348	0	0	101	26	20.4724
PCDHB15	0	genome.wustl.edu	37	5	140627174	140627174	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140627174	140627174	G	A	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	silent	c.2028	p.A676	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				238	0	0	81	43	34.6774
PCDHGA1	0	genome.wustl.edu	37	5	140712688	140712688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140712688	140712688	G	A	SNP	PCDHGA1	ENST00000378105	human	ensembl	74_37	+1	known	missense	c.2437	p.E813K	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956				110	0	0	43	12	21.8182
PCDHGA7	0	genome.wustl.edu	37	5	140764119	140764119	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140764119	140764119	C	T	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	silent	c.1653	p.F551	0.012	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537				243	0	0	63	32	33.6842
PCDHGA9	0	genome.wustl.edu	37	5	140783163	140783163	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140783163	140783163	C	T	SNP	PCDHGA9	ENST00000573521	human	ensembl	74_37	+1	known	missense	c.644	p.S215L	0.019	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934				66	0	0	35	22	38.5965
PCDHGB6	0	genome.wustl.edu	37	5	140789345	140789345	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140789345	140789345	C	T	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	missense	c.1576	p.R526C	0.989	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				30	0	0	12	5	29.4118
PCDHGC5	0	genome.wustl.edu	37	5	140885041	140885041	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140885041	140885041	C	T	SNP	PCDHGC5	ENST00000252087	human	ensembl	74_37	+1	known	silent	c.2601	p.S867	0.962	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764				245	0	0	65	29	30.8511
PCDHGC5	0	genome.wustl.edu	37	5	140890548	140890548	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140890548	140890548	T	C	SNP	PCDHGC5	ENST00000252087	human	ensembl	74_37	+1	known	silent	c.2643	p.G881	0.003	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764				259	0	0	95	34	26.3566
DIAPH1	0	genome.wustl.edu	37	5	140908488	140908488	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	140908488	140908488	C	T	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	silent	c.2802	p.L934	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				92	0	0	33	9	21.4286
FCHSD1	0	genome.wustl.edu	37	5	141029028	141029028	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	141029028	141029028	C	T	SNP	FCHSD1	ENST00000435817	human	ensembl	74_37	-1	known	silent	c.309	p.A103	0.007	pfam_FCH_dom,smart_FCH_dom	pfam_SH3_domain,pfam_SH3_2,pfam_FCH_dom,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	FCHSD1	HGNC	ENSG00000197948				337	1	0.295858	84	56	40
PCDH1	0	genome.wustl.edu	37	5	141248471	141248471	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	141248471	141248471	A	G	SNP	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	missense	c.566	p.I189T	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453				325	0	0	141	39	21.6667
NR3C1	0	genome.wustl.edu	37	5	142780298	142780298	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	142780298	142780298	C	A	SNP	NR3C1	ENST00000231509	human	ensembl	74_37	-1	known	missense	c.107	p.G36V	1.000	pfam_Glcrtcd_rcpt,prints_Glcrtcd_rcpt	pfam_Glcrtcd_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Glcrtcd_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR3C1	HGNC	ENSG00000113580				112	0	0	58	34	36.9565
ADRB2	0	genome.wustl.edu	37	5	148206713	148206713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	148206713	148206713	G	A	SNP	ADRB2	ENST00000305988	human	ensembl	74_37	+1	known	missense	c.319	p.E107K	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB2_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRB2	HGNC	ENSG00000169252				107	0	0	54	23	29.8701
PPARGC1B	0	genome.wustl.edu	37	5	149216029	149216029	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	149216029	149216029	G	A	SNP	PPARGC1B	ENST00000309241	human	ensembl	74_37	+1	known	missense	c.2011	p.A671T	0.062	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846				170	0	0	55	21	27.6316
FAT2	0	genome.wustl.edu	37	5	150885493	150885493	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	150885493	150885493	A	G	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.12683	p.F4228S	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				391	1	0.255102	120	50	29.4118
SPARC	0	genome.wustl.edu	37	5	151043687	151043687	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	151043687	151043687	C	T	SNP	SPARC	ENST00000231061	human	ensembl	74_37	-1	known	missense	c.844	p.A282T	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Follistatin/Osteonectin_EGF,pfam_Kazal_dom,smart_Fol_N,smart_Kazal_dom	-	no_errors	SPARC	HGNC	ENSG00000113140				178	0	0	68	12	15
EBF1	0	genome.wustl.edu	37	5	158223392	158223392	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	158223392	158223392	C	T	SNP	EBF1	ENST00000313708	human	ensembl	74_37	-1	known	silent	c.870	p.G290	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,superfamily_Ig_E-set,superfamily_bHLH_dom,smart_IPT	-	no_errors	EBF1	HGNC	ENSG00000164330				124	0	0	45	16	26.2295
SLU7	0	genome.wustl.edu	37	5	159833494	159833494	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	159833494	159833494	A	G	SNP	SLU7	ENST00000297151	human	ensembl	74_37	-1	known	missense	c.1268	p.V423A	1.000	pfam_Slu7	pfam_Slu7,superfamily_Znf_CCHC	-	no_errors	SLU7	HGNC	ENSG00000164609				135	0	0	64	28	30.4348
TENM2	0	genome.wustl.edu	37	5	167674485	167674485	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	167674485	167674485	A	G	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	missense	c.6541	p.S2181G	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				92	0	0	39	12	23.5294
PANK3	0	genome.wustl.edu	37	5	167995867	167995867	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	167995867	167995867	G	A	SNP	PANK3	ENST00000239231	human	ensembl	74_37	-1	known	silent	c.165	p.N55	0.986	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK3	HGNC	ENSG00000120137				209	0	0	78	39	33.3333
SLIT3	0	genome.wustl.edu	37	5	168093688	168093688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	168093688	168093688	G	A	SNP	SLIT3	ENST00000519560	human	ensembl	74_37	-1	known	missense	c.4343	p.P1448L	0.001	NULL	pfam_EG-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347				68	0	0	21	10	32.2581
DOCK2	0	genome.wustl.edu	37	5	169454916	169454916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	169454916	169454916	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.3431	p.R1144Q	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				130	1	0.763359	44	9	16.9811
DOCK2	0	genome.wustl.edu	37	5	169454950	169454950	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	169454950	169454950	A	G	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	silent	c.3465	p.S1155	0.014	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				100	0	0	27	21	43.75
DOCK2	0	genome.wustl.edu	37	5	169483739	169483739	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	169483739	169483739	C	T	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	silent	c.4347	p.R1449	1.000	pfam_DOCK_C	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				75	0	0	28	4	12.5
CPLX2	0	genome.wustl.edu	37	5	175306962	175306962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	175306962	175306962	G	A	SNP	CPLX2	ENST00000359546	human	ensembl	74_37	+1	known	missense	c.319	p.D107N	1.000	pfam_Synaphin	pfam_Synaphin	-	no_errors	CPLX2	HGNC	ENSG00000145920				62	0	0	9	4	30.7692
SIMC1	0	genome.wustl.edu	37	5	175772305	175772305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	175772305	175772305	C	T	SNP	SIMC1	ENST00000443967	human	ensembl	74_37	+1	known	missense	c.2476	p.R826C	0.956	NULL	NULL	-	no_errors	SIMC1	HGNC	ENSG00000170085				142	1	0.699301	36	18	33.3333
CDHR2	0	genome.wustl.edu	37	5	176016134	176016134	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	176016134	176016134	T	G	SNP	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	missense	c.2959	p.F987V	0.876	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				405	0	0	123	55	30.8989
UNC5A	0	genome.wustl.edu	37	5	176306759	176306759	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	176306759	176306759	G	T	SNP	UNC5A	ENST00000329542	human	ensembl	74_37	+1	known	missense	c.2401	p.A801S	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5A	HGNC	ENSG00000113763				112	0	0	33	12	26.6667
FGFR4	0	genome.wustl.edu	37	5	176517963	176517963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	176517963	176517963	G	A	SNP	FGFR4	ENST00000292408	human	ensembl	74_37	+1	known	missense	c.461	p.R154H	1.000	pirsf_FGF_rcpt_fam,pfscan_Ig-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR4	HGNC	ENSG00000160867				101	0	0	28	12	30
HNRNPAB	0	genome.wustl.edu	37	5	177637254	177637254	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	177637254	177637254	C	T	SNP	HNRNPAB	ENST00000358344	human	ensembl	74_37	+1	known	silent	c.909	p.Y303	1.000	NULL	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPAB	HGNC	ENSG00000197451				94	0	0	27	9	25
ADAMTS2	0	genome.wustl.edu	37	5	178771083	178771083	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	178771083	178771083	G	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	silent	c.219	p.H73	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				67	0	0	9	3	25
MGAT1	0	genome.wustl.edu	37	5	180218736	180218736	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	180218736	180218736	C	T	SNP	MGAT1	ENST00000307826	human	ensembl	74_37	-1	known	silent	c.1236	p.P412	0.983	pfam_Glyco_trans_13	pfam_Glyco_trans_13	-	no_errors	MGAT1	HGNC	ENSG00000131446				112	0	0	35	11	23.913
CDH9	0	genome.wustl.edu	37	5	26881636	26881636	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	26881636	26881636	T	C	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.1979	p.N660S	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				241	0	0	112	49	30.4348
IRX2	0	genome.wustl.edu	37	5	2748586	2748586	+	Silent	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	2748586	2748586	A	C	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	silent	c.1236	p.S412	0.975	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				55	0	0	8	5	38.4615
CDH6	0	genome.wustl.edu	37	5	31299688	31299688	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	31299688	31299688	T	C	SNP	CDH6	ENST00000265071	human	ensembl	74_37	+1	known	missense	c.761	p.V254A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361				174	0	0	54	22	28.9474
PDZD2	0	genome.wustl.edu	37	5	32088318	32088318	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	32088318	32088318	G	T	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.4764	p.K1588N	0.009	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				191	0	0	70	36	33.9623
ADAMTS12	0	genome.wustl.edu	37	5	33658359	33658359	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	33658359	33658359	G	A	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.1120	p.R374C	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				248	0	0	84	35	29.4118
IRX1	0	genome.wustl.edu	37	5	3599762	3599762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	3599762	3599762	G	A	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.700	p.D234N	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				87	0	0	30	10	25
GHR	0	genome.wustl.edu	37	5	42719150	42719150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	42719150	42719150	G	A	SNP	GHR	ENST00000230882	human	ensembl	74_37	+1	known	missense	c.1541	p.C514Y	0.968	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	GHR	HGNC	ENSG00000112964				79	0	0	34	18	34.6154
ADAMTS16	0	genome.wustl.edu	37	5	5306817	5306817	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	5306817	5306817	C	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.3387	p.S1129R	0.776	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				28	0	0	15	3	16.6667
ANKRD55	0	genome.wustl.edu	37	5	55396104	55396104	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	55396104	55396104	T	C	SNP	ANKRD55	ENST00000341048	human	ensembl	74_37	-1	known	missense	c.1751	p.N584S	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD55	HGNC	ENSG00000164512				185	0	0	61	44	41.9048
RAB3C	0	genome.wustl.edu	37	5	57913586	57913586	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	57913586	57913586	A	G	SNP	RAB3C	ENST00000282878	human	ensembl	74_37	+1	known	silent	c.141	p.L47	0.901	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3C	HGNC	ENSG00000152932				105	0	0	40	21	34.4262
HTR1A	0	genome.wustl.edu	37	5	63256724	63256724	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	63256724	63256724	G	T	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	missense	c.823	p.L275M	0.121	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				106	0	0	45	17	27.4194
HTR1A	0	genome.wustl.edu	37	5	63257082	63257082	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	63257082	63257082	C	T	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	silent	c.465	p.A155	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				160	0	0	58	24	29.2683
RNF180	0	genome.wustl.edu	37	5	63509644	63509644	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	63509644	63509644	G	T	SNP	RNF180	ENST00000389100	human	ensembl	74_37	+1	known	missense	c.491	p.R164M	0.963	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF180	HGNC	ENSG00000164197				169	0	0	62	37	37.3737
NSUN2	0	genome.wustl.edu	37	5	6600045	6600045	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	6600045	6600045	G	A	SNP	NSUN2	ENST00000264670	human	ensembl	74_37	-1	known	silent	c.2298	p.P766	0.192	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT,prints_RCMT_NCL1	-	no_errors	NSUN2	HGNC	ENSG00000037474				236	0	0	70	37	34.5794
SRD5A1	0	genome.wustl.edu	37	5	6663023	6663023	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	6663023	6663023	G	A	SNP	SRD5A1	ENST00000274192	human	ensembl	74_37	+1	known	silent	c.657	p.A219	0.003	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	SRD5A1	HGNC	ENSG00000145545				164	0	0	55	27	32.9268
TNPO1	0	genome.wustl.edu	37	5	72144271	72144271	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	72144271	72144271	G	A	SNP	TNPO1	ENST00000337273	human	ensembl	74_37	+1	known	silent	c.75	p.Q25	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312				103	0	0	21	20	48.7805
HMGCR	0	genome.wustl.edu	37	5	74651260	74651260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	74651260	74651260	G	A	SNP	HMGCR	ENST00000287936	human	ensembl	74_37	+1	known	missense	c.1793	p.R598H	0.998	pfam_HMG_CoA_Rdtase,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161				208	0	0	90	41	31.2977
POLK	0	genome.wustl.edu	37	5	74877075	74877075	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	74877075	74877075	C	T	SNP	POLK	ENST00000241436	human	ensembl	74_37	+1	known	nonsense	c.736	p.R246*	0.000	pfam_DNA_repair_prot_UmuC-like,pfscan_DNA_repair_prot_UmuC-like_N	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_PolY_HhH_motif,superfamily_DNA_pol_Y-fam_little_finger,smart_Znf_Rad18_put,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLK	HGNC	ENSG00000122008				99	0	0	51	21	29.1667
POLK	0	genome.wustl.edu	37	5	74880741	74880741	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	74880741	74880741	C	T	SNP	POLK	ENST00000241436	human	ensembl	74_37	+1	known	missense	c.1216	p.H406Y	0.998	pfam_DNA_pol_Y-fam_little_finger	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_PolY_HhH_motif,superfamily_DNA_pol_Y-fam_little_finger,smart_Znf_Rad18_put,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLK	HGNC	ENSG00000122008				168	0	0	71	19	21.1111
ADCY2	0	genome.wustl.edu	37	5	7706929	7706929	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	7706929	7706929	C	T	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.1182	p.G394	0.255	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				209	0	0	76	38	33.3333
MTRR	0	genome.wustl.edu	37	5	7889244	7889244	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	7889244	7889244	A	G	SNP	MTRR	ENST00000264668	human	ensembl	74_37	+1	known	missense	c.1264	p.S422G	0.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	MTRR	HGNC	ENSG00000124275				103	0	0	35	14	28.5714
ATP6AP1L	0	genome.wustl.edu	37	5	81614036	81614036	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	81614036	81614036	G	A	SNP	ATP6AP1L	ENST00000380167	human	ensembl	74_37	+1	known	missense	c.592	p.A198T	0.001	NULL	NULL	-	no_errors	ATP6AP1L	HGNC	ENSG00000205464				126	0	0	45	12	21.0526
HAPLN1	0	genome.wustl.edu	37	5	82940335	82940335	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	82940335	82940335	C	T	SNP	HAPLN1	ENST00000274341	human	ensembl	74_37	-1	known	missense	c.622	p.G208S	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN1	HGNC	ENSG00000145681				126	0	0	41	20	32.7869
BRD9	0	genome.wustl.edu	37	5	881252	881252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	881252	881252	C	T	SNP	BRD9	ENST00000467963	human	ensembl	74_37	-1	known	missense	c.1012	p.V338M	1.000	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD9	HGNC	ENSG00000028310				63	0	0	18	9	33.3333
BRD9	0	genome.wustl.edu	37	5	884147	884147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	884147	884147	G	A	SNP	BRD9	ENST00000467963	human	ensembl	74_37	-1	known	missense	c.872	p.T291M	0.996	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD9	HGNC	ENSG00000028310				105	0	0	31	10	24.3902
SEMA5A	0	genome.wustl.edu	37	5	9122889	9122889	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	9122889	9122889	G	A	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.1660	p.H554Y	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				182	0	0	54	7	11.4754
FAM81B	0	genome.wustl.edu	37	5	94764401	94764401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	94764401	94764401	G	A	SNP	FAM81B	ENST00000283357	human	ensembl	74_37	+1	known	missense	c.751	p.A251T	0.075	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347				246	0	0	127	47	27.0115
ERAP1	0	genome.wustl.edu	37	5	96121526	96121526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	96121526	96121526	C	T	SNP	ERAP1	ENST00000296754	human	ensembl	74_37	-1	known	missense	c.1909	p.A637T	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307				83	0	0	36	19	34.5455
ERAP1	0	genome.wustl.edu	37	5	96139411	96139411	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	96139411	96139411	C	T	SNP	ERAP1	ENST00000296754	human	ensembl	74_37	-1	known	silent	c.219	p.T73	0.400	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307				245	0	0	81	39	32.5
CCNC	0	genome.wustl.edu	37	6	100006350	100006350	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	100006350	100006350	G	T	SNP	CCNC	ENST00000482541	human	ensembl	74_37	-1	putative	nonsense	c.369	p.C123*	0.006	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNC	HGNC	ENSG00000112237				142	0	0	58	30	34.0909
GRIK2	0	genome.wustl.edu	37	6	102074496	102074496	+	Silent	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	102074496	102074496	G	C	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	silent	c.525	p.V175	0.020	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				101	0	0	39	25	39.0625
TSPYL4	0	genome.wustl.edu	37	6	116573986	116573986	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	116573986	116573986	G	A	SNP	TSPYL4	ENST00000420283	human	ensembl	74_37	-1	known	nonsense	c.1186	p.R396*	0.307	NULL	pfam_NAP_family	-	no_errors	TSPYL4	HGNC	ENSG00000187189				20	0	0	5	4	44.4444
RNF217	0	genome.wustl.edu	37	6	125402611	125402611	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	125402611	125402611	A	G	SNP	RNF217	ENST00000560949	human	ensembl	74_37	+1	known	missense	c.808	p.M270V	1.000	NULL	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373				64	0	0	29	14	32.5581
ENSG00000187461	0	genome.wustl.edu	37	6	13470413	13470413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	13470413	13470413	G	A	SNP	ENSG00000187461	ENST00000558378	human	ensembl	74_37	-1	novel	missense	c.100	p.R34C	0.000	NULL	NULL	-	no_errors	AL583828.1	Clone_based_ensembl_gene	ENSG00000187461				105	0	0	32	13	28.8889
MTFR2	0	genome.wustl.edu	37	6	136560840	136560840	+	Silent	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	136560840	136560840	A	T	SNP	MTFR2	ENST00000420702	human	ensembl	74_37	-1	known	silent	c.633	p.P211	0.001	pfam_Mtfr1	pfam_Mtfr1	-	no_errors	MTFR2	HGNC	ENSG00000146410				72	0	0	33	18	35.2941
RAB32	0	genome.wustl.edu	37	6	146865194	146865194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	146865194	146865194	G	A	SNP	RAB32	ENST00000367495	human	ensembl	74_37	+1	known	missense	c.187	p.A63T	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB32	HGNC	ENSG00000118508				72	0	0	22	8	26.6667
ZBTB2	0	genome.wustl.edu	37	6	151694619	151694619	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	151694619	151694619	A	G	SNP	ZBTB2	ENST00000325144	human	ensembl	74_37	-1	known	silent	c.154	p.L52	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB2	HGNC	ENSG00000181472				166	0	0	55	36	39.5604
SYNE1	0	genome.wustl.edu	37	6	152826425	152826425	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	152826425	152826425	A	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.689	p.V230A	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				109	0	0	45	21	31.8182
VIP	0	genome.wustl.edu	37	6	153078261	153078261	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	153078261	153078261	A	C	SNP	VIP	ENST00000367244	human	ensembl	74_37	+1	known	missense	c.498	p.E166D	0.925	NULL	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP	-	no_errors	VIP	HGNC	ENSG00000146469				78	0	0	23	14	37.8378
ARID1B	0	genome.wustl.edu	37	6	157511235	157511235	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	157511235	157511235	G	T	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	silent	c.3873	p.R1291	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				232	0	0	101	45	30.8219
TULP4	0	genome.wustl.edu	37	6	158900999	158900999	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	158900999	158900999	A	G	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	missense	c.1243	p.T415A	1.000	superfamily_Tumour_necrosis_fac-like_dom	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				90	0	0	40	14	25.9259
FNDC1	0	genome.wustl.edu	37	6	159652977	159652977	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	159652977	159652977	C	A	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.1433	p.S478Y	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				98	0	0	20	13	39.3939
ATXN1	0	genome.wustl.edu	37	6	16327921	16327921	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	16327921	16327921	C	A	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	missense	c.621	p.Q207H	0.022	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				35	0	0	7	4	36.3636
SFT2D1	0	genome.wustl.edu	37	6	166738057	166738057	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	166738057	166738057	T	A	SNP	SFT2D1	ENST00000361731	human	ensembl	74_37	-1	known	missense	c.378	p.L126F	0.421	pfam_Vesicle_transpt_Got1/SFT2	pfam_Vesicle_transpt_Got1/SFT2	-	no_errors	SFT2D1	HGNC	ENSG00000198818				116	0	0	40	18	31.0345
CDKAL1	0	genome.wustl.edu	37	6	21000460	21000460	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	21000460	21000460	A	T	SNP	CDKAL1	ENST00000274695	human	ensembl	74_37	+1	known	missense	c.912	p.E304D	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996				158	0	0	83	13	13.5417
PRL	0	genome.wustl.edu	37	6	22290519	22290519	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	22290519	22290519	G	A	SNP	PRL	ENST00000306482	human	ensembl	74_37	-1	known	silent	c.376	p.L126	0.150	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	PRL	HGNC	ENSG00000172179				144	0	0	68	17	20
PRL	0	genome.wustl.edu	37	6	22290529	22290529	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	22290529	22290529	A	G	SNP	PRL	ENST00000306482	human	ensembl	74_37	-1	known	silent	c.366	p.P122	0.085	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	PRL	HGNC	ENSG00000172179				149	0	0	70	16	18.6047
DCDC2	0	genome.wustl.edu	37	6	24178686	24178686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	24178686	24178686	G	A	SNP	DCDC2	ENST00000378454	human	ensembl	74_37	-1	known	missense	c.1198	p.R400C	0.003	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	DCDC2	HGNC	ENSG00000146038				153	0	0	73	30	29.1262
HIST1H2AA	0	genome.wustl.edu	37	6	25726703	25726703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	25726703	25726703	C	T	SNP	HIST1H2AA	ENST00000297012	human	ensembl	74_37	-1	known	missense	c.53	p.R18H	0.998	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AA	HGNC	ENSG00000164508				159	0	0	62	19	23.4568
HIST1H2BJ	0	genome.wustl.edu	37	6	27100268	27100268	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	27100268	27100268	A	C	SNP	HIST1H2BJ	ENST00000339812	human	ensembl	74_37	-1	known	missense	c.262	p.S88A	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BJ	HGNC	ENSG00000124635				231	0	0	88	33	27.2727
GABBR1	0	genome.wustl.edu	37	6	29571394	29571394	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	29571394	29571394	G	T	SNP	GABBR1	ENST00000377034	human	ensembl	74_37	-1	known	missense	c.2812	p.L938M	0.970	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Peripla_BP_I,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681				23	0	0	9	4	30.7692
TRIM26	0	genome.wustl.edu	37	6	30166507	30166507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	30166507	30166507	C	T	SNP	TRIM26	ENST00000437089	human	ensembl	74_37	-1	known	missense	c.374	p.R125Q	0.985	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127				59	0	0	24	16	40
RPP21	0	genome.wustl.edu	37	6	30314573	30314573	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	30314573	30314573	T	C	SNP	RPP21	ENST00000428040	human	ensembl	74_37	+1	known	missense	c.520	p.S174P	0.000	NULL	pfam_Rpr2	-	no_errors	RPP21	HGNC	ENSG00000241370				192	0	0	68	39	36.4486
MDC1	0	genome.wustl.edu	37	6	30673725	30673725	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	30673725	30673725	G	A	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.3235	p.R1079C	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				415	0	0	129	51	28.3333
DDR1	0	genome.wustl.edu	37	6	30866732	30866732	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	30866732	30866732	G	C	SNP	DDR1	ENST00000376575	human	ensembl	74_37	+1	known	missense	c.2537	p.C846S	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580				196	0	0	78	31	28.4404
GTF2H4	0	genome.wustl.edu	37	6	30881130	30881130	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	30881130	30881130	G	A	SNP	GTF2H4	ENST00000259895	human	ensembl	74_37	+1	known	nonsense	c.1182	p.W394*	1.000	tigrfam_TFIIH_p52/Tfb2	pfam_TFIIH_p52/Tfb2,tigrfam_TFIIH_p52/Tfb2	-	no_errors	GTF2H4	HGNC	ENSG00000213780				131	0	0	49	15	23.4375
DDX39B	0	genome.wustl.edu	37	6	31504396	31504396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	31504396	31504396	G	A	SNP	DDX39B	ENST00000417556	human	ensembl	74_37	-1	known	missense	c.542	p.P181L	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX39B	HGNC	ENSG00000198563				152	0	0	81	6	6.89655
LTB	0	genome.wustl.edu	37	6	31548437	31548437	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	31548437	31548437	C	T	SNP	LTB	ENST00000483972	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LTB	HGNC	ENSG00000227507				76	0	0	32	8	20
CFB	0	genome.wustl.edu	37	6	31915553	31915553	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	31915553	31915553	C	T	SNP	CFB	ENST00000556679	human	ensembl	74_37	+1	known	silent	c.2199	p.A733	0.960	NULL	pfam_Peptidase_S1,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CFB	HGNC	ENSG00000243649				396	0	0	151	60	28.436
TNXB	0	genome.wustl.edu	37	6	32023712	32023712	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	32023712	32023712	C	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	nonsense	c.8383	p.E2795*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				114	0	0	33	10	23.2558
PSMB9	0	genome.wustl.edu	37	6	32823980	32823980	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	32823980	32823980	A	G	SNP	PSMB9	ENST00000374859	human	ensembl	74_37	+1	known	silent	c.126	p.A42	0.981	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB9	HGNC	ENSG00000240065				84	0	0	34	4	10.5263
WDR46	0	genome.wustl.edu	37	6	33255457	33255457	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	33255457	33255457	G	A	SNP	WDR46	ENST00000374617	human	ensembl	74_37	-1	known	missense	c.662	p.A221V	0.865	superfamily_WD40_repeat_dom	pfam_BING4_C_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR46	HGNC	ENSG00000227057				98	0	0	29	15	34.0909
RGL2	0	genome.wustl.edu	37	6	33259832	33259832	+	RNA	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	33259832	33259832	A	G	SNP	RGL2	ENST00000437840	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RGL2	HGNC	ENSG00000237441				54	0	0	16	8	33.3333
DAXX	0	genome.wustl.edu	37	6	33287482	33287482	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	33287482	33287482	C	G	SNP	DAXX	ENST00000266000	human	ensembl	74_37	-1	known	missense	c.1615	p.A539P	0.000	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209				174	0	0	75	24	24.2424
KIFC1	0	genome.wustl.edu	37	6	33373361	33373361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	33373361	33373361	C	T	SNP	KIFC1	ENST00000428849	human	ensembl	74_37	+1	known	missense	c.1489	p.L497F	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649				46	0	0	12	2	14.2857
ITPR3	0	genome.wustl.edu	37	6	33638469	33638469	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	33638469	33638469	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	silent	c.2463	p.A821	0.508	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				192	1	0.518135	51	16	23.8806
ITPR3	0	genome.wustl.edu	37	6	33657159	33657159	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	33657159	33657159	C	A	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.6839	p.P2280H	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				86	0	0	36	14	28
SCUBE3	0	genome.wustl.edu	37	6	35201059	35201059	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	35201059	35201059	C	T	SNP	SCUBE3	ENST00000394681	human	ensembl	74_37	+1	known	silent	c.693	p.T231	0.015	smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	SCUBE3	HGNC	ENSG00000146197				83	0	0	24	8	25
CPNE5	0	genome.wustl.edu	37	6	36712850	36712850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	36712850	36712850	G	A	SNP	CPNE5	ENST00000244751	human	ensembl	74_37	-1	known	missense	c.1406	p.A469V	1.000	pfam_Copine,smart_VWF_A,pfscan_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE5	HGNC	ENSG00000124772				68	0	0	14	8	36.3636
CMTR1	0	genome.wustl.edu	37	6	37443948	37443948	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	37443948	37443948	C	T	SNP	CMTR1	ENST00000373451	human	ensembl	74_37	+1	known	missense	c.2083	p.R695W	1.000	NULL	pfam_rRNA_MeTrfase_FtsJ_dom,pfam_G_patch_dom,smart_G_patch_dom,smart_WW_dom,pfscan_G_patch_dom	-	no_errors	CMTR1	HGNC	ENSG00000137200				187	0	0	69	25	26.5957
MDGA1	0	genome.wustl.edu	37	6	37605931	37605931	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	37605931	37605931	C	T	SNP	MDGA1	ENST00000505425	human	ensembl	74_37	-1	putative	silent	c.2826	p.A942	0.000	NULL	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA1	HGNC	ENSG00000112139				35	0	0	13	5	27.7778
KCNK17	0	genome.wustl.edu	37	6	39272337	39272337	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	39272337	39272337	G	A	SNP	KCNK17	ENST00000373231	human	ensembl	74_37	-1	known	silent	c.447	p.N149	0.987	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK17	HGNC	ENSG00000124780				277	0	0	83	32	27.8261
KCNK16	0	genome.wustl.edu	37	6	39285600	39285600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	39285600	39285600	C	T	SNP	KCNK16	ENST00000425054	human	ensembl	74_37	-1	known	missense	c.457	p.A153T	0.000	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl	-	no_errors	KCNK16	HGNC	ENSG00000095981				37	0	0	5	7	58.3333
KIF6	0	genome.wustl.edu	37	6	39507857	39507857	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	39507857	39507857	G	A	SNP	KIF6	ENST00000287152	human	ensembl	74_37	-1	known	nonsense	c.1567	p.R523*	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627				388	0	0	120	48	28.5714
CUL7	0	genome.wustl.edu	37	6	43008323	43008323	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	43008323	43008323	A	C	SNP	CUL7	ENST00000535468	human	ensembl	74_37	-1	known	missense	c.4220	p.L1407R	1.000	pfam_Cullin_N,superfamily_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090				308	0	0	158	11	6.50888
POLH	0	genome.wustl.edu	37	6	43573039	43573039	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	43573039	43573039	A	G	SNP	POLH	ENST00000372236	human	ensembl	74_37	+1	known	missense	c.1057	p.T353A	0.998	pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pirsf_DNA_pol_eta	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pirsf_DNA_pol_eta,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLH	HGNC	ENSG00000170734				33	0	0	19	5	20.8333
AARS2	0	genome.wustl.edu	37	6	44275065	44275065	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	44275065	44275065	A	G	SNP	AARS2	ENST00000244571	human	ensembl	74_37	-1	known	missense	c.961	p.Y321H	0.996	pfam_Ala-tRNA-synth_IIc_N,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608				30	0	0	13	6	31.5789
GPR116	0	genome.wustl.edu	37	6	46849830	46849830	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	46849830	46849830	G	A	SNP	GPR116	ENST00000265417	human	ensembl	74_37	-1	known	silent	c.627	p.Y209	0.934	pfam_SEA_dom	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122				340	0	0	154	10	6.09756
TFAP2D	0	genome.wustl.edu	37	6	50696967	50696967	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	50696967	50696967	C	G	SNP	TFAP2D	ENST00000008391	human	ensembl	74_37	+1	known	missense	c.825	p.N275K	1.000	pfam_TF_AP2_C,prints_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2D	HGNC	ENSG00000008197				244	0	0	94	40	29.8507
TFAP2B	0	genome.wustl.edu	37	6	50811032	50811032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	50811032	50811032	C	T	SNP	TFAP2B	ENST00000263046	human	ensembl	74_37	+1	known	missense	c.1337	p.T446I	1.000	NULL	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196				97	0	0	24	13	35.1351
PAQR8	0	genome.wustl.edu	37	6	52268987	52268987	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	52268987	52268987	T	G	SNP	PAQR8	ENST00000360726	human	ensembl	74_37	+1	known	missense	c.976	p.S326A	0.994	NULL	pfam_HlyIII-related,superfamily_C-type_lectin_fold	-	no_errors	PAQR8	HGNC	ENSG00000170915				36	0	0	14	9	39.1304
DST	0	genome.wustl.edu	37	6	56471844	56471844	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	56471844	56471844	A	T	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.7483	p.S2495T	0.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				95	0	0	48	20	29.4118
DST	0	genome.wustl.edu	37	6	56484660	56484660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	56484660	56484660	G	A	SNP	DST	ENST00000370765	human	ensembl	74_37	-1	known	missense	c.4172	p.A1391V	0.929	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914				139	0	0	71	37	34.2593
F13A1	0	genome.wustl.edu	37	6	6167765	6167765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	6167765	6167765	G	A	SNP	F13A1	ENST00000264870	human	ensembl	74_37	-1	known	missense	c.1834	p.R612C	0.948	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491				89	0	0	28	16	36.3636
HUS1B	0	genome.wustl.edu	37	6	656489	656489	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	656489	656489	G	T	SNP	HUS1B	ENST00000380907	human	ensembl	74_37	-1	known	silent	c.456	p.A152	0.000	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	-	no_errors	HUS1B	HGNC	ENSG00000188996				150	0	0	63	31	32.9787
HUS1B	0	genome.wustl.edu	37	6	656933	656933	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	656933	656933	G	A	SNP	HUS1B	ENST00000380907	human	ensembl	74_37	-1	known	silent	c.12	p.R4	0.009	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	-	no_errors	HUS1B	HGNC	ENSG00000188996				144	0	0	32	11	25.5814
EYS	0	genome.wustl.edu	37	6	66205228	66205228	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	66205228	66205228	G	A	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	missense	c.76	p.R26W	0.000	NULL	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107				143	0	0	71	34	32.381
SMAP1	0	genome.wustl.edu	37	6	71566593	71566593	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	71566593	71566593	T	G	SNP	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	missense	c.821	p.L274R	0.788	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				124	0	0	53	24	31.1688
RREB1	0	genome.wustl.edu	37	6	7229845	7229845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	7229845	7229845	C	T	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	missense	c.1513	p.P505S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				560	2	0.355872	170	59	25.7642
MTO1	0	genome.wustl.edu	37	6	74190493	74190493	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	74190493	74190493	A	G	SNP	MTO1	ENST00000415954	human	ensembl	74_37	+1	known	missense	c.1225	p.N409D	1.000	pfam_GIDA-rel,tigrfam_GidA	pfam_GIDA-rel,pfam_FAD_bind_dom,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_GidA	-	no_errors	MTO1	HGNC	ENSG00000135297				122	0	0	68	24	26.087
COL12A1	0	genome.wustl.edu	37	6	75875409	75875409	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	75875409	75875409	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.2797	p.R933C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				203	1	0.490196	93	27	22.5
LCA5	0	genome.wustl.edu	37	6	80197138	80197138	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	80197138	80197138	C	T	SNP	LCA5	ENST00000369846	human	ensembl	74_37	-1	known	silent	c.1677	p.S559	0.936	NULL	NULL	-	no_errors	LCA5	HGNC	ENSG00000135338				116	0	0	71	20	21.978
ELOVL4	0	genome.wustl.edu	37	6	80656932	80656932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	80656932	80656932	G	A	SNP	ELOVL4	ENST00000369816	human	ensembl	74_37	-1	known	missense	c.65	p.T22M	1.000	NULL	pfam_GNS1_SUR4	-	no_errors	ELOVL4	HGNC	ENSG00000118402				36	0	0	10	3	23.0769
TPBG	0	genome.wustl.edu	37	6	83074917	83074917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	83074917	83074917	G	A	SNP	TPBG	ENST00000369750	human	ensembl	74_37	+1	known	missense	c.239	p.R80H	1.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	TPBG	HGNC	ENSG00000146242				63	0	0	25	7	21.875
DOPEY1	0	genome.wustl.edu	37	6	83877689	83877689	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	83877689	83877689	A	G	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.7201	p.N2401D	0.987	NULL	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				94	0	0	30	23	43.3962
PRSS35	0	genome.wustl.edu	37	6	84233970	84233970	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	84233970	84233970	C	T	SNP	PRSS35	ENST00000369700	human	ensembl	74_37	+1	known	silent	c.810	p.D270	0.000	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	PRSS35	HGNC	ENSG00000146250				104	0	0	48	9	15.7895
SPACA1	0	genome.wustl.edu	37	6	88769196	88769196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	88769196	88769196	C	T	SNP	SPACA1	ENST00000237201	human	ensembl	74_37	+1	known	missense	c.500	p.S167L	1.000	NULL	NULL	-	no_errors	SPACA1	HGNC	ENSG00000118434				55	0	0	29	12	29.2683
MDN1	0	genome.wustl.edu	37	6	90383871	90383871	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	90383871	90383871	T	C	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.13199	p.D4400G	0.652	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				83	0	0	28	7	20
OFCC1	0	genome.wustl.edu	37	6	9933054	9933054	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	9933054	9933054	G	T	SNP	OFCC1	ENST00000316020	human	ensembl	74_37	-1	known	missense	c.409	p.L137I	1.000	NULL	NULL	-	no_errors	OFCC1	HGNC	ENSG00000181355				258	1	0.3861	107	49	31.4103
GNB2	0	genome.wustl.edu	37	7	100276158	100276158	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	100276158	100276158	G	A	SNP	GNB2	ENST00000303210	human	ensembl	74_37	+1	known	silent	c.837	p.S279	0.004	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB2	HGNC	ENSG00000172354				102	0	0	12	19	61.2903
GIGYF1	0	genome.wustl.edu	37	7	100281714	100281714	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	100281714	100281714	C	T	SNP	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	silent	c.1797	p.P599	0.079	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830				80	0	0	18	6	25
GIGYF1	0	genome.wustl.edu	37	7	100283065	100283065	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	100283065	100283065	T	C	SNP	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	missense	c.1094	p.K365R	0.051	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830				72	0	0	25	6	19.3548
CUX1	0	genome.wustl.edu	37	7	101845106	101845106	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	101845106	101845106	C	T	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	silent	c.2562	p.A854	0.004	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				69	0	0	19	14	42.4242
CUX1	0	genome.wustl.edu	37	7	101847780	101847780	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	101847780	101847780	T	C	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	missense	c.3050	p.L1017P	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				183	0	0	58	17	22.6667
C7orf50	0	genome.wustl.edu	37	7	1049694	1049694	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	1049694	1049694	T	C	SNP	C7orf50	ENST00000357429	human	ensembl	74_37	-1	known	missense	c.215	p.K72R	1.000	NULL	pfam_DUF2373	-	no_errors	C7orf50	HGNC	ENSG00000146540				48	0	0	20	20	50
HBP1	0	genome.wustl.edu	37	7	106829851	106829851	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	106829851	106829851	G	C	SNP	HBP1	ENST00000222574	human	ensembl	74_37	+1	known	missense	c.880	p.V294L	1.000	pfam_Ataxin-1_HBP1,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	pfam_Ataxin-1_HBP1,pfam_HMG_box_dom,superfamily_Ataxin-1_HBP1,superfamily_HMG_box_dom,smart_Ataxin_AXH_dom,smart_HMG_box_dom,pfscan_Ataxin-1_HBP1,pfscan_HMG_box_dom	-	no_errors	HBP1	HGNC	ENSG00000105856				132	0	0	60	19	24.0506
LRRN3	0	genome.wustl.edu	37	7	110763255	110763255	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	110763255	110763255	C	T	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	nonsense	c.427	p.Q143*	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				100	0	0	44	24	35.2941
LRRN3	0	genome.wustl.edu	37	7	110763755	110763755	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	110763755	110763755	A	G	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	silent	c.927	p.P309	0.993	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				168	0	0	53	24	31.1688
TMEM168	0	genome.wustl.edu	37	7	112423866	112423866	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	112423866	112423866	T	G	SNP	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	missense	c.1015	p.S339R	1.000	superfamily_ConA-like_lec_gl_sf	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802				337	0	0	138	52	27.3684
C7orf60	0	genome.wustl.edu	37	7	112472732	112472732	+	Splice_Site	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	112472732	112472732	T	C	SNP	C7orf60	ENST00000297145	human	ensembl	74_37	-1	known	splice_site	c.474-2	e4-2	1.000	-	-	-	no_errors	C7orf60	HGNC	ENSG00000164603				117	0	0	58	26	30.9524
CPED1	0	genome.wustl.edu	37	7	120687010	120687010	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	120687010	120687010	C	A	SNP	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	missense	c.503	p.S168Y	0.823	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				189	1	0.526316	86	37	30.0813
AASS	0	genome.wustl.edu	37	7	121738915	121738915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	121738915	121738915	C	T	SNP	AASS	ENST00000393376	human	ensembl	74_37	-1	known	missense	c.1412	p.R471H	0.000	NULL	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311				52	0	0	24	20	45.4545
TAS2R16	0	genome.wustl.edu	37	7	122635118	122635118	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	122635118	122635118	G	A	SNP	TAS2R16	ENST00000249284	human	ensembl	74_37	-1	known	silent	c.571	p.L191	0.191	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519				149	0	0	69	27	28.125
SND1	0	genome.wustl.edu	37	7	127447555	127447555	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	127447555	127447555	G	A	SNP	SND1	ENST00000354725	human	ensembl	74_37	+1	known	silent	c.1170	p.L390	0.049	pfam_Staphylococal_nuclease_OB-fold,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Staphylococal_nuclease_OB-fold	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				136	0	0	63	29	31.5217
PLXNA4	0	genome.wustl.edu	37	7	131895821	131895821	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	131895821	131895821	G	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.2179	p.L727I	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				19	0	0	13	5	27.7778
PLXNA4	0	genome.wustl.edu	37	7	131910964	131910964	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	131910964	131910964	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	silent	c.1938	p.F646	0.342	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				302	0	0	60	33	35.4839
EPHB6	0	genome.wustl.edu	37	7	142561853	142561853	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	142561853	142561853	G	A	SNP	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	missense	c.295	p.G99R	0.935	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				346	1	0.288184	107	46	30.0654
TRPV5	0	genome.wustl.edu	37	7	142622792	142622792	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	142622792	142622792	G	C	SNP	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	missense	c.954	p.S318R	1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV5,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412				76	0	0	20	14	41.1765
EPHA1	0	genome.wustl.edu	37	7	143092032	143092032	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	143092032	143092032	T	G	SNP	EPHA1	ENST00000275815	human	ensembl	74_37	-1	known	missense	c.2221	p.S741R	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904				94	0	0	39	25	39.0625
FAM115C	0	genome.wustl.edu	37	7	143400268	143400268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	143400268	143400268	G	A	SNP	FAM115C	ENST00000441159	human	ensembl	74_37	+1	known	missense	c.181	p.V61M	0.998	NULL	NULL	-	no_errors	FAM115C	HGNC	ENSG00000170379				113	0	0	24	31	56.3636
ZNF786	0	genome.wustl.edu	37	7	148768359	148768359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	148768359	148768359	C	T	SNP	ZNF786	ENST00000491431	human	ensembl	74_37	-1	known	missense	c.1505	p.R502Q	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362				72	0	0	34	18	34.6154
SSPO	0	genome.wustl.edu	37	7	149521182	149521182	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	149521182	149521182	C	T	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.882	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				29	0	0	9	3	25
SSPO	0	genome.wustl.edu	37	7	149522390	149522390	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	149522390	149522390	G	A	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				193	0	0	46	33	41.7722
GIMAP8	0	genome.wustl.edu	37	7	150171329	150171329	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	150171329	150171329	G	A	SNP	GIMAP8	ENST00000307271	human	ensembl	74_37	+1	known	silent	c.912	p.P304	0.895	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP8	HGNC	ENSG00000171115				134	0	0	94	6	6
GIMAP1	0	genome.wustl.edu	37	7	150417880	150417880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	150417880	150417880	G	A	SNP	GIMAP1	ENST00000307194	human	ensembl	74_37	+1	known	missense	c.788	p.R263Q	0.153	NULL	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP1	HGNC	ENSG00000213203				19	0	0	3	3	50
AGAP3	0	genome.wustl.edu	37	7	150819824	150819824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	150819824	150819824	G	A	SNP	AGAP3	ENST00000473312	human	ensembl	74_37	+1	known	missense	c.1141	p.V381I	1.000	NULL	pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	AGAP3	HGNC	ENSG00000133612				88	0	0	21	10	32.2581
KMT2C	0	genome.wustl.edu	37	7	151859695	151859695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	151859695	151859695	G	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.10967	p.A3656V	0.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				189	0	0	96	50	34.2466
INTS1	0	genome.wustl.edu	37	7	1539921	1539921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	1539921	1539921	C	T	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	missense	c.815	p.G272E	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				20	0	0	3	3	50
PTPRN2	0	genome.wustl.edu	37	7	157926632	157926632	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	157926632	157926632	A	G	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	silent	c.1362	p.P454	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				191	0	0	57	29	33.7209
ISPD	0	genome.wustl.edu	37	7	16445839	16445839	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	16445839	16445839	G	A	SNP	ISPD	ENST00000407010	human	ensembl	74_37	-1	known	silent	c.381	p.H127	1.000	pfam_IspD	pfam_IspD	-	no_errors	ISPD	HGNC	ENSG00000214960				120	0	0	70	15	17.6471
ELFN1	0	genome.wustl.edu	37	7	1784429	1784429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	1784429	1784429	G	A	SNP	ELFN1	ENST00000424383	human	ensembl	74_37	+1	known	missense	c.197	p.R66Q	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	ELFN1	HGNC	ENSG00000225968				12	0	0	3	2	40
TWIST1	0	genome.wustl.edu	37	7	19156599	19156599	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	19156599	19156599	G	A	SNP	TWIST1	ENST00000242261	human	ensembl	74_37	-1	known	missense	c.346	p.R116W	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TWIST1	HGNC	ENSG00000122691				46	0	0	11	4	26.6667
SP8	0	genome.wustl.edu	37	7	20824269	20824269	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	20824269	20824269	C	T	SNP	SP8	ENST00000418710	human	ensembl	74_37	-1	known	silent	c.1167	p.S389	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Antifreeze_1	-	no_errors	SP8	HGNC	ENSG00000164651				35	0	0	13	5	27.7778
MAD1L1	0	genome.wustl.edu	37	7	2108877	2108877	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	2108877	2108877	G	A	SNP	MAD1L1	ENST00000265854	human	ensembl	74_37	-1	known	silent	c.1170	p.H390	0.022	pfam_Mad1	pfam_Mad1	-	no_errors	MAD1L1	HGNC	ENSG00000002822				158	0	0	36	35	49.2958
TAX1BP1	0	genome.wustl.edu	37	7	27824919	27824919	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	27824919	27824919	C	T	SNP	TAX1BP1	ENST00000396319	human	ensembl	74_37	+1	known	silent	c.750	p.T250	0.943	pfam_CoCoA	pfam_CoCoA	-	no_errors	TAX1BP1	HGNC	ENSG00000106052				91	0	0	40	21	34.4262
NOD1	0	genome.wustl.edu	37	7	30485816	30485816	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	30485816	30485816	A	G	SNP	NOD1	ENST00000222823	human	ensembl	74_37	-1	known	silent	c.2394	p.S798	0.392	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100				252	0	0	106	46	30.2632
DPY19L2P1	0	genome.wustl.edu	37	7	35131520	35131520	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	35131520	35131520	C	T	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				76	0	0	72	5	6.49351
GLI3	0	genome.wustl.edu	37	7	42007509	42007509	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	42007509	42007509	T	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.2116	p.S706C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				183	0	0	69	25	26.5957
COA1	0	genome.wustl.edu	37	7	43688248	43688248	+	RNA	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	43688248	43688248	T	C	SNP	COA1	ENST00000459713	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COA1	HGNC	ENSG00000106603				167	0	0	80	45	36
AEBP1	0	genome.wustl.edu	37	7	44148743	44148743	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	44148743	44148743	G	T	SNP	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	missense	c.1056	p.E352D	0.682	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				92	0	0	18	8	30.7692
PURB	0	genome.wustl.edu	37	7	44924585	44924585	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	44924585	44924585	G	A	SNP	PURB	ENST00000395699	human	ensembl	74_37	-1	known	silent	c.363	p.S121	1.000	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	-	no_errors	PURB	HGNC	ENSG00000146676				23	0	0	5	3	37.5
CCM2	0	genome.wustl.edu	37	7	45115623	45115623	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	45115623	45115623	G	A	SNP	CCM2	ENST00000381112	human	ensembl	74_37	+1	known	silent	c.1365	p.A455	0.073	NULL	pfscan_PTB/PI_dom	-	no_errors	CCM2	HGNC	ENSG00000136280				66	0	0	20	11	35.4839
ABCA13	0	genome.wustl.edu	37	7	48412044	48412044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	48412044	48412044	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.11083	p.V3695I	0.130	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				132	0	0	68	32	32
ABCA13	0	genome.wustl.edu	37	7	48520733	48520733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	48520733	48520733	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.13076	p.A4359V	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				18	0	0	4	4	50
FIGNL1	0	genome.wustl.edu	37	7	50513345	50513345	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	50513345	50513345	C	T	SNP	FIGNL1	ENST00000356889	human	ensembl	74_37	-1	known	silent	c.1641	p.R547	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436				252	0	0	107	43	28.6667
FIGNL1	0	genome.wustl.edu	37	7	50514882	50514882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	50514882	50514882	C	T	SNP	FIGNL1	ENST00000356889	human	ensembl	74_37	-1	known	missense	c.104	p.R35H	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436				77	0	0	40	24	37.5
TRIM50	0	genome.wustl.edu	37	7	72727084	72727084	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	72727084	72727084	G	A	SNP	TRIM50	ENST00000333149	human	ensembl	74_37	-1	known	missense	c.1297	p.P433S	0.983	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM50	HGNC	ENSG00000146755				16	0	0	2	3	60
GTF2IRD1	0	genome.wustl.edu	37	7	73933979	73933979	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	73933979	73933979	C	T	SNP	GTF2IRD1	ENST00000265755	human	ensembl	74_37	+1	known	silent	c.846	p.S282	0.268	pirsf_TF_II-I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704				94	0	0	45	10	18.1818
STYXL1	0	genome.wustl.edu	37	7	75633097	75633097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	75633097	75633097	G	A	SNP	STYXL1	ENST00000248600	human	ensembl	74_37	-1	known	missense	c.676	p.R226C	0.888	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	STYXL1	HGNC	ENSG00000127952				94	0	0	29	15	34.0909
DTX2	0	genome.wustl.edu	37	7	76112200	76112200	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	76112200	76112200	G	A	SNP	DTX2	ENST00000324432	human	ensembl	74_37	+1	known	missense	c.644	p.R215H	1.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	HGNC	ENSG00000091073				329	1	0.30303	102	33	24.4444
RSBN1L	0	genome.wustl.edu	37	7	77379032	77379032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	77379032	77379032	G	A	SNP	RSBN1L	ENST00000334955	human	ensembl	74_37	+1	known	missense	c.995	p.R332Q	1.000	NULL	NULL	-	no_errors	RSBN1L	HGNC	ENSG00000187257				70	0	0	54	25	31.6456
GNAT3	0	genome.wustl.edu	37	7	80141143	80141143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	80141143	80141143	C	T	SNP	GNAT3	ENST00000398291	human	ensembl	74_37	-1	known	missense	c.100	p.V34I	0.946	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT3	HGNC	ENSG00000214415				41	0	0	20	7	25.9259
CACNA2D1	0	genome.wustl.edu	37	7	81591314	81591314	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	81591314	81591314	C	T	SNP	CACNA2D1	ENST00000356253	human	ensembl	74_37	-1	known	silent	c.2898	p.T966	0.011	NULL	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956				102	1	0.970874	43	16	27.1186
SEMA3A	0	genome.wustl.edu	37	7	83634741	83634741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	83634741	83634741	G	A	SNP	SEMA3A	ENST00000265362	human	ensembl	74_37	-1	known	missense	c.1274	p.T425M	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3A	HGNC	ENSG00000075213				204	0	0	71	28	28.2828
ABCB4	0	genome.wustl.edu	37	7	87032525	87032525	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	87032525	87032525	G	A	SNP	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	nonsense	c.3580	p.R1194*	1.000	pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				264	1	0.377358	124	44	26.1905
ABCB1	0	genome.wustl.edu	37	7	87160650	87160650	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	87160650	87160650	T	C	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	missense	c.2645	p.Q882R	0.995	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				216	0	0	94	40	29.8507
ADAM22	0	genome.wustl.edu	37	7	87564497	87564497	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	87564497	87564497	C	G	SNP	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	missense	c.242	p.P81R	0.072	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277				22	0	0	18	6	25
AKAP9	0	genome.wustl.edu	37	7	91670110	91670110	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	91670110	91670110	G	A	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	silent	c.4851	p.T1617	0.973	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				77	0	0	24	13	35.1351
PEX1	0	genome.wustl.edu	37	7	92146932	92146932	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	92146932	92146932	G	A	SNP	PEX1	ENST00000248633	human	ensembl	74_37	-1	known	silent	c.897	p.N299	0.000	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980				68	0	0	54	17	23.9437
RBM48	0	genome.wustl.edu	37	7	92158877	92158877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	92158877	92158877	G	A	SNP	RBM48	ENST00000265732	human	ensembl	74_37	+1	known	missense	c.199	p.A67T	1.000	NULL	NULL	-	no_errors	RBM48	HGNC	ENSG00000127993				95	0	0	53	21	28.3784
CALCR	0	genome.wustl.edu	37	7	93072952	93072952	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	93072952	93072952	T	A	SNP	CALCR	ENST00000359558	human	ensembl	74_37	-1	known	nonsense	c.868	p.K290*	0.047	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCR	HGNC	ENSG00000004948				147	0	0	75	25	25
OCM2	0	genome.wustl.edu	37	7	97616448	97616448	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	97616448	97616448	T	C	SNP	OCM2	ENST00000257627	human	ensembl	74_37	-1	known	missense	c.215	p.E72G	0.888	pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	OCM2	HGNC	ENSG00000135175				54	0	0	16	15	48.3871
ZNF394	0	genome.wustl.edu	37	7	99097689	99097689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	99097689	99097689	G	A	SNP	ZNF394	ENST00000337673	human	ensembl	74_37	-1	known	missense	c.28	p.R10C	0.002	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908				98	0	0	54	8	12.9032
ZSCAN25	0	genome.wustl.edu	37	7	99226971	99226971	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	99226971	99226971	G	A	SNP	ZSCAN25	ENST00000334715	human	ensembl	74_37	+1	known	silent	c.963	p.A321	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN25	HGNC	ENSG00000197037				104	0	0	47	23	32.8571
AZGP1	0	genome.wustl.edu	37	7	99565777	99565777	+	Splice_Site	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	99565777	99565777	C	T	SNP	AZGP1	ENST00000292401	human	ensembl	74_37	-1	known	splice_site	c.613+1	e3+1	1.000	-	-	-	no_errors	AZGP1	HGNC	ENSG00000160862				83	0	0	71	5	6.57895
AZGP1P1	0	genome.wustl.edu	37	7	99580907	99580907	+	RNA	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	99580907	99580907	C	G	SNP	AZGP1P1	ENST00000425474	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AZGP1P1	HGNC	ENSG00000214313				33	0	0	18	10	35.7143
MCM7	0	genome.wustl.edu	37	7	99695354	99695354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	99695354	99695354	C	T	SNP	MCM7	ENST00000303887	human	ensembl	74_37	-1	known	missense	c.1000	p.E334K	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508				313	0	0	217	58	21.0909
KLF10	0	genome.wustl.edu	37	8	103663847	103663847	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	103663847	103663847	G	A	SNP	KLF10	ENST00000285407	human	ensembl	74_37	-1	known	missense	c.713	p.T238M	0.546	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF10	HGNC	ENSG00000155090				78	0	0	39	19	32.7586
RP1L1	0	genome.wustl.edu	37	8	10467297	10467297	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	10467297	10467297	G	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.4311	p.A1437	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				424	0	0	177	84	32.1839
RP1L1	0	genome.wustl.edu	37	8	10469919	10469919	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	10469919	10469919	G	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.1689	p.T563	0.001	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				219	0	0	65	33	33.6735
RIMS2	0	genome.wustl.edu	37	8	104897650	104897650	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	104897650	104897650	G	C	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.823	p.D275H	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				118	0	0	51	32	38.5542
RIMS2	0	genome.wustl.edu	37	8	105001556	105001556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	105001556	105001556	G	A	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.2951	p.R984Q	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				170	0	0	75	21	21.875
XKR6	0	genome.wustl.edu	37	8	11058827	11058827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	11058827	11058827	C	T	SNP	XKR6	ENST00000416569	human	ensembl	74_37	-1	known	missense	c.22	p.G8S	1.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044				43	0	0	4	3	42.8571
BLK	0	genome.wustl.edu	37	8	11418890	11418890	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	11418890	11418890	A	G	SNP	BLK	ENST00000259089	human	ensembl	74_37	+1	known	missense	c.1109	p.E370G	0.997	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573				46	0	0	6	3	33.3333
FAM86B2	0	genome.wustl.edu	37	8	12285239	12285239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	12285239	12285239	C	T	SNP	FAM86B2	ENST00000309608	human	ensembl	74_37	-1	known	missense	c.451	p.A151T	0.015	NULL	NULL	-	no_errors	FAM86B2	HGNC	ENSG00000145002				145	0	0	25	6	19.3548
ATAD2	0	genome.wustl.edu	37	8	124346559	124346559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	124346559	124346559	C	T	SNP	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	missense	c.3215	p.R1072H	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				46	0	0	25	6	19.3548
FER1L6-AS2	0	genome.wustl.edu	37	8	125072767	125072767	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	125072767	125072767	G	A	SNP	FER1L6-AS2	ENST00000520031	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	FER1L6-AS2	HGNC	ENSG00000253868				90	0	0	13	14	51.8519
ADCY8	0	genome.wustl.edu	37	8	132052179	132052179	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	132052179	132052179	C	T	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.401	p.C134Y	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				19	0	0	9	5	35.7143
EFR3A	0	genome.wustl.edu	37	8	132968153	132968153	+	Splice_Site	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	132968153	132968153	G	A	SNP	EFR3A	ENST00000254624	human	ensembl	74_37	+1	known	splice_site	c.776+1	e7+1	1.000	-	-	-	no_errors	EFR3A	HGNC	ENSG00000132294				82	0	0	34	12	26.087
TG	0	genome.wustl.edu	37	8	133900585	133900585	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	133900585	133900585	G	A	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.2533	p.V845I	0.995	superfamily_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				129	0	0	50	17	25.3731
TG	0	genome.wustl.edu	37	8	133923712	133923712	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	133923712	133923712	A	G	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.4093	p.N1365D	1.000	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				236	0	0	74	32	30.1887
FAM135B	0	genome.wustl.edu	37	8	139164495	139164495	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	139164495	139164495	G	A	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	silent	c.2223	p.S741	0.227	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				67	0	0	28	11	28.2051
DENND3	0	genome.wustl.edu	37	8	142176321	142176321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	142176321	142176321	C	T	SNP	DENND3	ENST00000262585	human	ensembl	74_37	+1	known	missense	c.1346	p.P449L	0.275	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339				402	0	0	111	42	27.451
CYP11B1	0	genome.wustl.edu	37	8	143956560	143956560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	143956560	143956560	C	T	SNP	CYP11B1	ENST00000292427	human	ensembl	74_37	-1	known	missense	c.1211	p.R404H	0.001	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882				150	0	0	29	11	27.5
PLEC	0	genome.wustl.edu	37	8	144998376	144998376	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	144998376	144998376	C	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.6132	p.E2044D	1.000	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				52	0	0	26	7	21.2121
BOP1	0	genome.wustl.edu	37	8	145512946	145512946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	145512946	145512946	C	T	SNP	BOP1	ENST00000307404	human	ensembl	74_37	-1	known	missense	c.139	p.G47S	0.005	NULL	pfam_BOP1_N_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BOP1	HGNC	ENSG00000170727				61	0	0	31	10	24.3902
ADCK5	0	genome.wustl.edu	37	8	145617837	145617837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	145617837	145617837	G	A	SNP	ADCK5	ENST00000308860	human	ensembl	74_37	+1	known	missense	c.1445	p.R482H	1.000	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK5	HGNC	ENSG00000173137				20	0	0	6	5	45.4545
DLGAP2	0	genome.wustl.edu	37	8	1514042	1514042	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	1514042	1514042	C	T	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.1184	p.P395L	0.996	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010				34	0	0	9	4	30.7692
PCM1	0	genome.wustl.edu	37	8	17830005	17830005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	17830005	17830005	G	A	SNP	PCM1	ENST00000325083	human	ensembl	74_37	+1	known	missense	c.3752	p.R1251H	0.996	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674				189	0	0	22	21	48.8372
CSGALNACT1	0	genome.wustl.edu	37	8	19363191	19363191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	19363191	19363191	G	A	SNP	CSGALNACT1	ENST00000311540	human	ensembl	74_37	-1	known	missense	c.155	p.T52M	0.997	NULL	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				79	0	0	60	14	18.9189
LZTS1	0	genome.wustl.edu	37	8	20110994	20110994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	20110994	20110994	G	A	SNP	LZTS1	ENST00000265801	human	ensembl	74_37	-1	known	missense	c.448	p.H150Y	1.000	NULL	NULL	-	no_errors	LZTS1	HGNC	ENSG00000061337				25	0	0	15	7	31.8182
EGR3	0	genome.wustl.edu	37	8	22548122	22548122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	22548122	22548122	G	A	SNP	EGR3	ENST00000317216	human	ensembl	74_37	-1	known	missense	c.1028	p.A343V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR3	HGNC	ENSG00000179388				169	0	0	25	26	50.9804
ESCO2	0	genome.wustl.edu	37	8	27649496	27649496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	27649496	27649496	G	A	SNP	ESCO2	ENST00000305188	human	ensembl	74_37	+1	known	missense	c.1280	p.R427H	1.000	NULL	NULL	-	no_errors	ESCO2	HGNC	ENSG00000171320				138	0	0	22	30	57.6923
KCNU1	0	genome.wustl.edu	37	8	36675180	36675180	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	36675180	36675180	C	T	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	silent	c.1008	p.V336	0.991	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				176	0	0	69	36	34.2857
ADRB3	0	genome.wustl.edu	37	8	37823668	37823668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	37823668	37823668	G	A	SNP	ADRB3	ENST00000345060	human	ensembl	74_37	-1	known	missense	c.320	p.A107V	0.970	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT6_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB3_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_5HT6_rcpt	-	no_errors	ADRB3	HGNC	ENSG00000188778				25	0	0	12	12	50
ANK1	0	genome.wustl.edu	37	8	41530137	41530137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	41530137	41530137	G	A	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.4831	p.R1611W	0.975	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				346	1	0.288184	107	91	45.9596
KAT6A	0	genome.wustl.edu	37	8	41834758	41834758	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	41834758	41834758	T	C	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	silent	c.1131	p.S377	0.822	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				167	0	0	101	31	23.4848
VDAC3	0	genome.wustl.edu	37	8	42252613	42252613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	42252613	42252613	G	A	SNP	VDAC3	ENST00000392935	human	ensembl	74_37	+1	known	missense	c.79	p.V27I	1.000	pfam_Porin_Euk/Tom40	pfam_Porin_Euk/Tom40,prints_Porin_Euk	-	no_errors	VDAC3	HGNC	ENSG00000078668				114	0	0	74	19	20.4301
RP1	0	genome.wustl.edu	37	8	55542473	55542473	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	55542473	55542473	A	G	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.6031	p.N2011D	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				157	0	0	57	30	34.4828
IMPAD1	0	genome.wustl.edu	37	8	57876593	57876593	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	57876593	57876593	G	A	SNP	IMPAD1	ENST00000262644	human	ensembl	74_37	-1	known	missense	c.839	p.P280L	1.000	pfam_Inositol_monophosphatase	pfam_Inositol_monophosphatase	-	no_errors	IMPAD1	HGNC	ENSG00000104331				19	0	0	11	5	31.25
ASPH	0	genome.wustl.edu	37	8	62555985	62555985	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	62555985	62555985	A	G	SNP	ASPH	ENST00000379454	human	ensembl	74_37	-1	known	silent	c.717	p.S239	0.734	pfam_Asp-B-hydro/Triadin_dom	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363				89	0	0	64	19	22.8916
NCOA2	0	genome.wustl.edu	37	8	71041004	71041004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	71041004	71041004	G	A	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.3536	p.T1179M	0.898	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				142	0	0	38	18	32.1429
HNF4G	0	genome.wustl.edu	37	8	76459914	76459914	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	76459914	76459914	A	G	SNP	HNF4G	ENST00000396423	human	ensembl	74_37	+1	known	missense	c.350	p.E117G	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4G	HGNC	ENSG00000164749				132	0	0	72	32	30.7692
ZFHX4	0	genome.wustl.edu	37	8	77763350	77763350	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	77763350	77763350	G	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.4193	p.R1398L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				87	0	0	30	16	34.7826
PPP1R3B	0	genome.wustl.edu	37	8	8998667	8998667	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	8998667	8998667	C	T	SNP	PPP1R3B	ENST00000310455	human	ensembl	74_37	-1	known	silent	c.495	p.T165	0.009	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3B	HGNC	ENSG00000173281				263	0	0	67	42	38.5321
OSGIN2	0	genome.wustl.edu	37	8	90937493	90937493	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	90937493	90937493	T	C	SNP	OSGIN2	ENST00000451899	human	ensembl	74_37	+1	known	silent	c.1383	p.P461	0.976	NULL	NULL	-	no_errors	OSGIN2	HGNC	ENSG00000164823				168	0	0	94	53	36.0544
RUNX1T1	0	genome.wustl.edu	37	8	92988171	92988171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	92988171	92988171	G	A	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	missense	c.1343	p.A448V	0.998	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				241	1	0.413223	90	42	31.8182
POP1	0	genome.wustl.edu	37	8	99168334	99168334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	99168334	99168334	G	A	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	missense	c.2114	p.C705Y	0.162	pfam_POPLD	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				224	0	0	82	28	25.4545
GABBR2	0	genome.wustl.edu	37	9	101151210	101151210	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	101151210	101151210	G	T	SNP	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	silent	c.1455	p.L485	0.971	prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928				172	1	0.578035	80	33	29.2035
GABBR2	0	genome.wustl.edu	37	9	101304265	101304265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	101304265	101304265	G	A	SNP	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	missense	c.520	p.R174W	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928				99	0	0	39	10	20.4082
ANKS6	0	genome.wustl.edu	37	9	101542559	101542559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	101542559	101542559	C	T	SNP	ANKS6	ENST00000375018	human	ensembl	74_37	-1	known	missense	c.1280	p.R427Q	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138				15	0	0	11	8	42.1053
MRPL50	0	genome.wustl.edu	37	9	104152754	104152754	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	104152754	104152754	A	T	SNP	MRPL50	ENST00000374865	human	ensembl	74_37	-1	known	missense	c.471	p.S157R	0.538	pfam_Ribosomal_L50_mt	pfam_Ribosomal_L50_mt	-	no_errors	MRPL50	HGNC	ENSG00000136897				150	0	0	69	28	28.866
GRIN3A	0	genome.wustl.edu	37	9	104390559	104390559	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	104390559	104390559	G	C	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.2477	p.P826R	0.995	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				75	0	0	45	21	31.8182
GRIN3A	0	genome.wustl.edu	37	9	104449065	104449065	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	104449065	104449065	C	A	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.1117	p.G373W	1.000	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				48	0	0	37	16	30.1887
SMC2	0	genome.wustl.edu	37	9	106875619	106875619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	106875619	106875619	C	T	SNP	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	missense	c.1277	p.A426V	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				173	0	0	79	24	23.301
ZNF462	0	genome.wustl.edu	37	9	109691637	109691637	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	109691637	109691637	A	G	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.5444	p.H1815R	0.950	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				212	1	0.469484	64	17	20.9877
ACTL7A	0	genome.wustl.edu	37	9	111625268	111625268	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	111625268	111625268	C	T	SNP	ACTL7A	ENST00000333999	human	ensembl	74_37	+1	known	silent	c.666	p.G222	0.118	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7A	HGNC	ENSG00000187003				94	0	0	41	19	31.6667
IKBKAP	0	genome.wustl.edu	37	9	111663938	111663938	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	111663938	111663938	G	A	SNP	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	silent	c.1878	p.D626	0.607	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061				134	0	0	51	25	32.8947
KIAA0368	0	genome.wustl.edu	37	9	114246732	114246732	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	114246732	114246732	G	C	SNP	KIAA0368	ENST00000259335	human	ensembl	74_37	-1	known	missense	c.181	p.R61G	0.987	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813				32	0	0	13	9	40.9091
SUSD1	0	genome.wustl.edu	37	9	114905861	114905861	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	114905861	114905861	C	A	SNP	SUSD1	ENST00000374264	human	ensembl	74_37	-1	known	missense	c.416	p.G139V	0.998	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD1	HGNC	ENSG00000106868				159	0	0	65	31	32.2917
SLC46A2	0	genome.wustl.edu	37	9	115652937	115652937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	115652937	115652937	G	A	SNP	SLC46A2	ENST00000374228	human	ensembl	74_37	-1	known	missense	c.25	p.R9W	0.012	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	SLC46A2	HGNC	ENSG00000119457				80	0	0	18	7	28
RGS3	0	genome.wustl.edu	37	9	116346500	116346500	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	116346500	116346500	G	A	SNP	RGS3	ENST00000350696	human	ensembl	74_37	+1	known	silent	c.2808	p.S936	0.961	NULL	pfam_RGS_dom,pfam_C2_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_C2_dom,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				119	0	0	51	21	29.1667
COL27A1	0	genome.wustl.edu	37	9	116930829	116930829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	116930829	116930829	G	A	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.994	p.A332T	0.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				112	0	0	46	21	31.3433
COL27A1	0	genome.wustl.edu	37	9	116931439	116931439	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	116931439	116931439	A	G	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.1604	p.K535R	0.481	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				212	0	0	63	34	35.0515
TNC	0	genome.wustl.edu	37	9	117848533	117848533	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	117848533	117848533	C	A	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.1477	p.G493W	1.000	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				260	0	0	92	47	33.8129
BRINP1	0	genome.wustl.edu	37	9	121929994	121929994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	121929994	121929994	G	A	SNP	BRINP1	ENST00000265922	human	ensembl	74_37	-1	known	missense	c.1654	p.R552C	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP1	HGNC	ENSG00000078725				77	0	0	32	16	33.3333
CDK5RAP2	0	genome.wustl.edu	37	9	123202115	123202115	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	123202115	123202115	A	G	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.3284	p.M1095T	0.004	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				140	0	0	67	20	22.9885
STXBP1	0	genome.wustl.edu	37	9	130416073	130416073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	130416073	130416073	C	T	SNP	STXBP1	ENST00000373299	human	ensembl	74_37	+1	known	missense	c.167	p.T56M	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854				93	0	0	22	21	48.8372
SH2D3C	0	genome.wustl.edu	37	9	130506862	130506862	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	130506862	130506862	A	G	SNP	SH2D3C	ENST00000314830	human	ensembl	74_37	-1	known	missense	c.1781	p.V594A	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	SH2D3C	HGNC	ENSG00000095370				168	0	0	50	17	25.3731
NAIF1	0	genome.wustl.edu	37	9	130829254	130829254	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	130829254	130829254	C	T	SNP	NAIF1	ENST00000373078	human	ensembl	74_37	-1	known	missense	c.127	p.A43T	1.000	NULL	NULL	-	no_errors	NAIF1	HGNC	ENSG00000171169				202	0	0	89	25	21.9298
SPTAN1	0	genome.wustl.edu	37	9	131369952	131369952	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	131369952	131369952	C	T	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	silent	c.4116	p.T1372	0.972	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				275	0	0	92	41	30.8271
LRRC8A	0	genome.wustl.edu	37	9	131669843	131669843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	131669843	131669843	C	T	SNP	LRRC8A	ENST00000259324	human	ensembl	74_37	+1	known	missense	c.400	p.L134F	0.993	pfam_LRR_protein-8_N	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802				156	0	0	44	21	32.3077
FUBP3	0	genome.wustl.edu	37	9	133506105	133506105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	133506105	133506105	G	A	SNP	FUBP3	ENST00000319725	human	ensembl	74_37	+1	known	missense	c.1208	p.R403Q	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164				72	0	0	28	11	28.2051
POMT1	0	genome.wustl.edu	37	9	134387468	134387468	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	134387468	134387468	A	G	SNP	POMT1	ENST00000372228	human	ensembl	74_37	+1	known	missense	c.1093	p.T365A	1.000	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	pfam_Glyco_trans_39,pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT1	HGNC	ENSG00000130714				73	0	0	18	4	18.1818
RAPGEF1	0	genome.wustl.edu	37	9	134465325	134465325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	134465325	134465325	G	A	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	missense	c.2311	p.R771C	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263				117	0	0	32	17	34.6939
REXO4	0	genome.wustl.edu	37	9	136282974	136282974	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	136282974	136282974	G	A	SNP	REXO4	ENST00000478037	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	REXO4	HGNC	ENSG00000148300				60	0	0	38	10	20.8333
COL5A1	0	genome.wustl.edu	37	9	137593103	137593103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	137593103	137593103	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.578	p.R193H	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				57	0	0	18	12	40
COL5A1	0	genome.wustl.edu	37	9	137622231	137622231	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	137622231	137622231	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	silent	c.1074	p.G358	0.562	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				200	0	0	48	25	34.2466
PPP1R26	0	genome.wustl.edu	37	9	138378948	138378948	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	138378948	138378948	C	T	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	silent	c.2592	p.T864	0.000	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				196	0	0	60	28	31.8182
CAMSAP1	0	genome.wustl.edu	37	9	138714328	138714328	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	138714328	138714328	C	T	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.2212	p.D738N	0.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				84	0	0	37	13	26
SDCCAG3	0	genome.wustl.edu	37	9	139304631	139304631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	139304631	139304631	C	T	SNP	SDCCAG3	ENST00000357365	human	ensembl	74_37	-1	known	missense	c.131	p.G44D	0.560	NULL	NULL	-	no_errors	SDCCAG3	HGNC	ENSG00000165689				29	0	0	7	2	22.2222
SEC16A	0	genome.wustl.edu	37	9	139369735	139369735	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	139369735	139369735	G	A	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	missense	c.2333	p.P778L	0.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				47	0	0	26	16	38.0952
C9orf163	0	genome.wustl.edu	37	9	139379255	139379255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	139379255	139379255	C	T	SNP	C9orf163	ENST00000354376	human	ensembl	74_37	+1	known	missense	c.355	p.H119Y	0.001	NULL	NULL	-	no_errors	C9orf163	HGNC	ENSG00000196366				143	0	0	62	23	27.0588
AGPAT2	0	genome.wustl.edu	37	9	139571989	139571989	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	139571989	139571989	G	A	SNP	AGPAT2	ENST00000371696	human	ensembl	74_37	-1	known	nonsense	c.202	p.R68*	0.934	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,tigrfam_AGP_acyltrans	-	no_errors	AGPAT2	HGNC	ENSG00000169692				75	0	0	30	13	30.2326
KIAA1984-AS1	0	genome.wustl.edu	37	9	139699924	139699924	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	139699924	139699924	G	A	SNP	KIAA1984-AS1	ENST00000414656	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIAA1984-AS1	HGNC	ENSG00000228544				56	0	0	13	4	23.5294
ABCA2	0	genome.wustl.edu	37	9	139904081	139904081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	139904081	139904081	C	T	SNP	ABCA2	ENST00000265662	human	ensembl	74_37	-1	known	missense	c.6646	p.G2216S	0.999	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331				129	0	0	35	31	46.9697
ABCA2	0	genome.wustl.edu	37	9	139912743	139912743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	139912743	139912743	C	T	SNP	ABCA2	ENST00000265662	human	ensembl	74_37	-1	known	missense	c.1880	p.R627H	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331				178	0	0	59	11	15.7143
GRIN1	0	genome.wustl.edu	37	9	140043558	140043558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	140043558	140043558	C	T	SNP	GRIN1	ENST00000371561	human	ensembl	74_37	+1	known	missense	c.668	p.A223V	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_CaM-bd_C0_NMDA_rcpt_NR1,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN1	HGNC	ENSG00000176884				31	0	0	9	3	25
NSMF	0	genome.wustl.edu	37	9	140349733	140349733	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	140349733	140349733	T	C	SNP	NSMF	ENST00000371475	human	ensembl	74_37	-1	known	missense	c.737	p.K246R	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	NSMF	HGNC	ENSG00000165802				167	0	0	35	26	42.623
PNPLA7	0	genome.wustl.edu	37	9	140361898	140361898	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	140361898	140361898	C	A	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.2910	p.K970N	1.000	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				100	0	0	25	21	45.6522
CNTLN	0	genome.wustl.edu	37	9	17464503	17464503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	17464503	17464503	G	A	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.3413	p.R1138Q	1.000	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				157	0	0	113	41	26.6234
ACER2	0	genome.wustl.edu	37	9	19423933	19423933	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	19423933	19423933	A	G	SNP	ACER2	ENST00000340967	human	ensembl	74_37	+1	known	missense	c.182	p.N61S	1.000	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER2	HGNC	ENSG00000177076				204	0	0	96	35	26.7176
FOCAD	0	genome.wustl.edu	37	9	20866997	20866997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	20866997	20866997	C	T	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	missense	c.2176	p.H726Y	1.000	superfamily_ARM-type_fold	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				81	0	0	91	6	6.18557
FOCAD	0	genome.wustl.edu	37	9	20986390	20986390	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	20986390	20986390	G	A	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	missense	c.4832	p.R1611H	0.000	pfam_DUF3028	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				77	0	0	35	17	32.6923
IFNA6	0	genome.wustl.edu	37	9	21350366	21350366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	21350366	21350366	G	A	SNP	IFNA6	ENST00000380210	human	ensembl	74_37	-1	known	missense	c.521	p.S174F	0.023	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA6	HGNC	ENSG00000120235				542	0	0	221	102	31.5789
IFNA6	0	genome.wustl.edu	37	9	21350769	21350769	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	21350769	21350769	G	T	SNP	IFNA6	ENST00000380210	human	ensembl	74_37	-1	known	missense	c.118	p.L40I	0.400	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA6	HGNC	ENSG00000120235				193	0	0	75	44	36.9748
MIR31	0	genome.wustl.edu	37	9	21512164	21512164	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	21512164	21512164	C	T	SNP	MIR31	ENST00000362307	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR31	HGNC	ENSG00000199177				122	0	0	42	29	40.8451
ELAVL2	0	genome.wustl.edu	37	9	23705056	23705056	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	23705056	23705056	C	T	SNP	ELAVL2	ENST00000380117	human	ensembl	74_37	-1	known	missense	c.347	p.R116H	1.000	pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL2	HGNC	ENSG00000107105				121	0	0	54	29	34.9398
PTENP1	0	genome.wustl.edu	37	9	33675379	33675379	+	RNA	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	33675379	33675379	C	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				23	0	0	23	4	14.8148
DNAJB5	0	genome.wustl.edu	37	9	34996396	34996396	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	34996396	34996396	C	T	SNP	DNAJB5	ENST00000454002	human	ensembl	74_37	+1	known	missense	c.562	p.R188C	1.000	NULL	pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB5	HGNC	ENSG00000137094				162	0	0	56	18	24.3243
UNC13B	0	genome.wustl.edu	37	9	35403977	35403977	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	35403977	35403977	C	T	SNP	UNC13B	ENST00000378496	human	ensembl	74_37	+1	known	nonsense	c.4780	p.R1594*	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722				108	0	0	31	16	34.0426
TLN1	0	genome.wustl.edu	37	9	35708384	35708384	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	35708384	35708384	T	C	SNP	TLN1	ENST00000314888	human	ensembl	74_37	-1	known	missense	c.4424	p.Q1475R	1.000	NULL	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN1	HGNC	ENSG00000137076				110	0	0	43	21	32.8125
SPATA31A6	0	genome.wustl.edu	37	9	43627776	43627776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	43627776	43627776	C	T	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.911	p.R304H	0.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				560	0	0	238	119	33.3333
PPAPDC2	0	genome.wustl.edu	37	9	4662506	4662506	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	4662506	4662506	T	A	SNP	PPAPDC2	ENST00000381883	human	ensembl	74_37	+1	known	missense	c.131	p.L44H	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAPDC2	HGNC	ENSG00000205808				33	0	0	4	7	63.6364
PGM5P2	0	genome.wustl.edu	37	9	69117748	69117748	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	69117748	69117748	G	A	SNP	PGM5P2	ENST00000591037	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.835	-	-	-	no_errors	PGM5P2	HGNC	ENSG00000227558				82	0	0	53	25	32.0513
PGM5	0	genome.wustl.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	70993145	70993145	A	G	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.292	p.I98V	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				114	0	0	76	9	10.5882
PIP5K1B	0	genome.wustl.edu	37	9	71606165	71606165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	71606165	71606165	G	A	SNP	PIP5K1B	ENST00000265382	human	ensembl	74_37	+1	known	missense	c.1612	p.V538I	0.998	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1B	HGNC	ENSG00000107242				64	0	0	30	5	14.2857
TMEM2	0	genome.wustl.edu	37	9	74312964	74312964	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	74312964	74312964	C	T	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	silent	c.3534	p.P1178	0.026	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				124	0	0	49	22	30.9859
TRPM6	0	genome.wustl.edu	37	9	77415270	77415270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	77415270	77415270	G	A	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.2138	p.S713L	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				111	0	0	62	32	34.0426
KIF27	0	genome.wustl.edu	37	9	86495258	86495258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	86495258	86495258	C	T	SNP	KIF27	ENST00000297814	human	ensembl	74_37	-1	known	missense	c.2597	p.R866K	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115				146	0	0	65	19	22.619
NAA35	0	genome.wustl.edu	37	9	88624836	88624836	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	88624836	88624836	A	C	SNP	NAA35	ENST00000361671	human	ensembl	74_37	+1	known	missense	c.1280	p.H427P	1.000	NULL	pfam_NatC_AcTrfase_Mak10	-	no_errors	NAA35	HGNC	ENSG00000135040				290	0	0	108	52	32.5
GOLM1	0	genome.wustl.edu	37	9	88650320	88650320	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	88650320	88650320	G	A	SNP	GOLM1	ENST00000388711	human	ensembl	74_37	-1	known	silent	c.978	p.P326	0.000	NULL	NULL	-	no_errors	GOLM1	HGNC	ENSG00000135052				157	0	0	68	37	35.2381
FBP2	0	genome.wustl.edu	37	9	97325689	97325689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	97325689	97325689	G	A	SNP	FBP2	ENST00000375337	human	ensembl	74_37	-1	known	missense	c.760	p.H254Y	1.000	pfam_FBPase_class-1/SBPase,prints_SBPase	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPtase,prints_SBPase	-	no_errors	FBP2	HGNC	ENSG00000130957				148	0	0	52	20	27.7778
ERCC6L2	0	genome.wustl.edu	37	9	98678529	98678529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	98678529	98678529	G	A	SNP	ERCC6L2	ENST00000437817	human	ensembl	74_37	+1	known	missense	c.437	p.G146E	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L2	HGNC	ENSG00000182150				91	0	0	33	16	32.6531
ZNF367	0	genome.wustl.edu	37	9	99150630	99150630	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	99150630	99150630	G	A	SNP	ZNF367	ENST00000375256	human	ensembl	74_37	-1	known	silent	c.942	p.D314	0.007	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF367	HGNC	ENSG00000165244				131	0	0	37	16	30.1887
ZNF367	0	genome.wustl.edu	37	9	99154788	99154788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	99154788	99154788	C	T	SNP	ZNF367	ENST00000375256	human	ensembl	74_37	-1	known	missense	c.722	p.R241H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF367	HGNC	ENSG00000165244				246	0	0	89	32	26.4463
ESX1	0	genome.wustl.edu	37	X	103495266	103495266	+	Silent	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	103495266	103495266	C	G	SNP	ESX1	ENST00000372588	human	ensembl	74_37	-1	known	silent	c.864	p.G288	0.309	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_POU	-	no_errors	ESX1	HGNC	ENSG00000123576				108	0	0	39	8	17.0213
IL1RAPL2	0	genome.wustl.edu	37	X	104999216	104999216	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	104999216	104999216	A	G	SNP	IL1RAPL2	ENST00000344799	human	ensembl	74_37	+1	known	missense	c.1238	p.Q413R	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ	-	no_errors	IL1RAPL2	HGNC	ENSG00000189108				170	0	0	55	19	25.6757
MORC4	0	genome.wustl.edu	37	X	106185767	106185767	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	106185767	106185767	T	C	SNP	MORC4	ENST00000355610	human	ensembl	74_37	-1	known	missense	c.2354	p.E785G	1.000	superfamily_Prefoldin	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131				243	0	0	91	32	26.0163
VSIG1	0	genome.wustl.edu	37	X	107310351	107310351	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	107310351	107310351	C	T	SNP	VSIG1	ENST00000415430	human	ensembl	74_37	+1	known	silent	c.507	p.N169	0.000	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG1	HGNC	ENSG00000101842				356	0	0	105	60	36.3636
GUCY2F	0	genome.wustl.edu	37	X	108708382	108708382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	108708382	108708382	C	T	SNP	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	missense	c.1021	p.E341K	0.929	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890				264	0	0	77	56	42.1053
DCX	0	genome.wustl.edu	37	X	110574173	110574173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	110574173	110574173	C	T	SNP	DCX	ENST00000338081	human	ensembl	74_37	-1	known	missense	c.1148	p.R383H	1.000	pirsf_Doublecortin_chordata	pfam_Doublecortin_dom,smart_Doublecortin_dom,pirsf_Doublecortin_chordata,pfscan_Doublecortin_dom	-	no_errors	DCX	HGNC	ENSG00000077279				284	0	0	146	11	7.00637
TRPC5	0	genome.wustl.edu	37	X	111022245	111022245	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	111022245	111022245	T	C	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.2200	p.T734A	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				63	0	0	17	11	39.2857
ZCCHC16	0	genome.wustl.edu	37	X	111698264	111698264	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	111698264	111698264	T	C	SNP	ZCCHC16	ENST00000340433	human	ensembl	74_37	+1	known	missense	c.308	p.L103P	0.001	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC16	HGNC	ENSG00000187823				153	0	0	81	52	39.0977
AMOT	0	genome.wustl.edu	37	X	112025831	112025831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	112025831	112025831	C	T	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	missense	c.2177	p.R726H	1.000	pfam_Angiomotin_C	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				149	0	0	48	24	33.3333
AMOT	0	genome.wustl.edu	37	X	112054516	112054516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	112054516	112054516	C	T	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	missense	c.1498	p.E500K	1.000	superfamily_Prefoldin,prints_Angiomotin	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				368	0	0	134	56	29.4737
LRCH2	0	genome.wustl.edu	37	X	114384422	114384422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	114384422	114384422	G	A	SNP	LRCH2	ENST00000317135	human	ensembl	74_37	-1	known	missense	c.1663	p.R555W	0.998	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224				87	0	0	28	14	33.3333
DOCK11	0	genome.wustl.edu	37	X	117817145	117817145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	117817145	117817145	A	G	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	missense	c.6067	p.M2023V	1.000	pfam_DOCK_C	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251				237	0	0	84	27	24.3243
KIAA1210	0	genome.wustl.edu	37	X	118221820	118221820	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	118221820	118221820	G	A	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	nonsense	c.3373	p.Q1125*	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423				335	1	0.297619	108	30	21.7391
KIAA1210	0	genome.wustl.edu	37	X	118223448	118223448	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	118223448	118223448	A	T	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	missense	c.1745	p.V582D	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423				161	0	0	76	26	25.4902
NKRF	0	genome.wustl.edu	37	X	118723881	118723881	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	118723881	118723881	C	T	SNP	NKRF	ENST00000542113	human	ensembl	74_37	-1	known	missense	c.1552	p.A518T	1.000	smart_dsRNA-bd_dom	pfam_G_patch_dom,pfam_R3H_ss-bd,smart_dsRNA-bd_dom,smart_G_patch_dom,smart_R3H_ss-bd,pfscan_G_patch_dom,pfscan_R3H_ss-bd	-	no_errors	NKRF	HGNC	ENSG00000186416				293	0	0	142	45	24.0642
SOWAHD	0	genome.wustl.edu	37	X	118893435	118893435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	118893435	118893435	G	A	SNP	SOWAHD	ENST00000343905	human	ensembl	74_37	+1	known	missense	c.805	p.A269T	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHD	HGNC	ENSG00000187808				33	0	0	13	4	23.5294
DCAF12L1	0	genome.wustl.edu	37	X	125685584	125685584	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	125685584	125685584	C	A	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	missense	c.1008	p.Q336H	0.268	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889				145	0	0	39	16	29.0909
DCAF12L1	0	genome.wustl.edu	37	X	125685809	125685809	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	125685809	125685809	A	G	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	silent	c.783	p.S261	0.353	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889				82	0	0	28	12	30
PRPS2	0	genome.wustl.edu	37	X	12838801	12838801	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	12838801	12838801	T	C	SNP	PRPS2	ENST00000398491	human	ensembl	74_37	+1	known	missense	c.752	p.L251P	0.998	tigrfam_Rib-P_diPkinase	pfam_PRibTrfase_dom,tigrfam_Rib-P_diPkinase	-	no_errors	PRPS2	HGNC	ENSG00000101911				149	0	0	61	49	44.5455
DDX26B	0	genome.wustl.edu	37	X	134713913	134713913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	134713913	134713913	G	A	SNP	DDX26B	ENST00000370752	human	ensembl	74_37	+1	known	missense	c.2209	p.A737T	0.001	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359				114	0	0	67	14	17.284
GPR112	0	genome.wustl.edu	37	X	135429446	135429446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	135429446	135429446	G	A	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.3581	p.G1194D	0.002	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				271	0	0	122	35	22.293
BRS3	0	genome.wustl.edu	37	X	135574496	135574496	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	135574496	135574496	A	G	SNP	BRS3	ENST00000370648	human	ensembl	74_37	+1	known	missense	c.1162	p.T388A	0.000	prints_Bombesin_rcpt_3	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Bombesin_rcpt_3,prints_Bombsn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	BRS3	HGNC	ENSG00000102239				199	0	0	73	13	15.1163
GPR101	0	genome.wustl.edu	37	X	136112978	136112978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	136112978	136112978	C	T	SNP	GPR101	ENST00000298110	human	ensembl	74_37	-1	known	missense	c.856	p.A286T	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370				418	0	0	107	76	41.5301
ZIC3	0	genome.wustl.edu	37	X	136649719	136649719	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	136649719	136649719	C	T	SNP	ZIC3	ENST00000287538	human	ensembl	74_37	+1	known	missense	c.869	p.P290L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925				194	0	0	63	21	25
CSF2RA	0	genome.wustl.edu	37	X	1409361	1409361	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	1409361	1409361	G	T	SNP	CSF2RA	ENST00000417535	human	ensembl	74_37	+1	known	missense	c.605	p.G202V	0.000	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	CSF2RA	HGNC	ENSG00000198223				459	0	0	278	44	13.6646
MAGEC1	0	genome.wustl.edu	37	X	140993747	140993747	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	140993747	140993747	C	T	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.557	p.T186I	0.434	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				462	0	0	201	21	9.45946
MAGEC1	0	genome.wustl.edu	37	X	140994228	140994228	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	140994228	140994228	C	G	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.1038	p.F346L	0.175	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				448	0	0	204	34	14.2857
MAGEC1	0	genome.wustl.edu	37	X	140994234	140994234	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	140994234	140994234	T	C	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	silent	c.1044	p.S348	0.025	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				431	0	0	195	40	17.0213
MAGEC1	0	genome.wustl.edu	37	X	140994241	140994241	+	Silent	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	140994241	140994241	T	C	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	silent	c.1051	p.L351	0.019	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				399	0	0	186	40	17.6991
MAGEC1	0	genome.wustl.edu	37	X	140994247	140994247	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	140994247	140994247	A	C	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.1057	p.I353L	0.123	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				407	0	0	190	39	17.0306
MAGEC1	0	genome.wustl.edu	37	X	140996506	140996506	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	140996506	140996506	G	A	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.3316	p.A1106T	0.000	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				288	0	0	84	52	38.2353
SLITRK2	0	genome.wustl.edu	37	X	144906159	144906159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	144906159	144906159	C	T	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	missense	c.2216	p.A739V	1.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				406	0	0	108	46	29.8701
MIR509-1	0	genome.wustl.edu	37	X	146342113	146342113	+	RNA	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	146342113	146342113	C	T	SNP	MIR509-1	ENST00000385265	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR509-1	HGNC	ENSG00000208000				217	0	0	118	36	23.3766
MTMR1	0	genome.wustl.edu	37	X	149905231	149905231	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	149905231	149905231	G	A	SNP	MTMR1	ENST00000445323	human	ensembl	74_37	+1	known	silent	c.1245	p.T415	0.006	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR1	HGNC	ENSG00000063601				68	0	0	30	16	34.7826
SLC25A6	0	genome.wustl.edu	37	X	1508411	1508411	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	1508411	1508411	C	T	SNP	SLC25A6	ENST00000381401	human	ensembl	74_37	-1	known	silent	c.321	p.T107	0.955	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A6	HGNC	ENSG00000169100				356	0	0	115	86	42.7861
ZNF185	0	genome.wustl.edu	37	X	152083707	152083707	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	152083707	152083707	G	A	SNP	ZNF185	ENST00000370270	human	ensembl	74_37	+1	known	missense	c.184	p.A62T	0.275	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZNF185	HGNC	ENSG00000147394				57	0	0	19	4	17.3913
ZNF185	0	genome.wustl.edu	37	X	152113917	152113917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	152113917	152113917	G	A	SNP	ZNF185	ENST00000370270	human	ensembl	74_37	+1	known	missense	c.1411	p.A471T	0.000	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZNF185	HGNC	ENSG00000147394				29	0	0	5	5	50
ATP2B3	0	genome.wustl.edu	37	X	152815582	152815582	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	152815582	152815582	T	C	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.1661	p.L554P	1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				87	0	0	35	9	20.4545
PLXNB3	0	genome.wustl.edu	37	X	153039725	153039725	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	153039725	153039725	C	T	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	missense	c.3673	p.R1225C	0.773	pfam_IPT,superfamily_Ig_E-set	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				9	0	0	3	5	62.5
PDZD4	0	genome.wustl.edu	37	X	153069256	153069256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	153069256	153069256	C	T	SNP	PDZD4	ENST00000164640	human	ensembl	74_37	-1	known	missense	c.1862	p.R621H	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840				113	0	0	23	5	17.8571
PDZD4	0	genome.wustl.edu	37	X	153069306	153069306	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	153069306	153069306	G	A	SNP	PDZD4	ENST00000164640	human	ensembl	74_37	-1	known	silent	c.1812	p.A604	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840				38	0	0	15	6	28.5714
L1CAM	0	genome.wustl.edu	37	X	153135051	153135051	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	153135051	153135051	A	G	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	silent	c.1197	p.S399	0.105	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				51	0	0	9	8	47.0588
HCFC1	0	genome.wustl.edu	37	X	153220367	153220367	+	Silent	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	153220367	153220367	G	T	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	silent	c.3483	p.G1161	0.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				16	0	0	8	3	27.2727
HCFC1	0	genome.wustl.edu	37	X	153229698	153229698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	153229698	153229698	G	A	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	missense	c.380	p.T127M	0.973	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				368	0	0	102	33	24.4444
TKTL1	0	genome.wustl.edu	37	X	153541074	153541074	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	153541074	153541074	A	G	SNP	TKTL1	ENST00000369915	human	ensembl	74_37	+1	known	missense	c.814	p.I272V	0.003	NULL	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350				155	1	0.641026	51	32	38.5542
FLNA	0	genome.wustl.edu	37	X	153581382	153581382	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	153581382	153581382	A	G	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	silent	c.6213	p.D2071	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				63	0	0	32	6	15.7895
FAM3A	0	genome.wustl.edu	37	X	153741210	153741210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	153741210	153741210	C	T	SNP	FAM3A	ENST00000359889	human	ensembl	74_37	-1	known	missense	c.64	p.V22M	0.000	NULL	NULL	-	no_errors	FAM3A	HGNC	ENSG00000071889				212	0	0	61	17	21.7949
VBP1	0	genome.wustl.edu	37	X	154464613	154464613	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	154464613	154464613	A	G	SNP	VBP1	ENST00000286428	human	ensembl	74_37	+1	known	missense	c.488	p.D163G	1.000	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin,pirsf_Prefoldin_su-3	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin,pirsf_Prefoldin_su-3	-	no_errors	VBP1	HGNC	ENSG00000155959				247	0	0	93	38	29.0076
CLIC2	0	genome.wustl.edu	37	X	154528224	154528224	+	Splice_Site	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	154528224	154528224	C	T	SNP	CLIC2	ENST00000369449	human	ensembl	74_37	-1	known	splice_site	c.168-1	e3-1	1.000	-	-	-	no_errors	CLIC2	HGNC	ENSG00000155962				120	0	0	47	23	32.8571
IL9R	0	genome.wustl.edu	37	X	155232627	155232627	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	155232627	155232627	T	C	SNP	IL9R	ENST00000244174	human	ensembl	74_37	+1	known	missense	c.85	p.C29R	0.026	NULL	superfamily_Fibronectin_type3	-	no_errors	IL9R	HGNC	ENSG00000124334				194	1	0.512821	52	14	21.2121
ENSG00000270726	0	genome.wustl.edu	37	X	155254985	155254985	+	RNA	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	155254985	155254985	G	A	SNP	ENSG00000270726	ENST00000285718	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	AJ271736.10	Clone_based_vega_gene	ENSG00000270726				57	0	0	21	5	19.2308
KLHL34	0	genome.wustl.edu	37	X	21675537	21675537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	21675537	21675537	G	A	SNP	KLHL34	ENST00000379499	human	ensembl	74_37	-1	known	missense	c.370	p.R124C	0.832	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915				20	0	0	10	7	41.1765
PTCHD1	0	genome.wustl.edu	37	X	23412229	23412229	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	23412229	23412229	G	C	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	missense	c.2594	p.R865P	1.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186				232	0	0	78	54	40.9091
CXorf58	0	genome.wustl.edu	37	X	23953371	23953371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	23953371	23953371	G	A	SNP	CXorf58	ENST00000379211	human	ensembl	74_37	+1	known	missense	c.614	p.R205H	1.000	NULL	NULL	-	no_errors	CXorf58	HGNC	ENSG00000165182				300	0	0	138	65	32.0197
CD99	0	genome.wustl.edu	37	X	2656273	2656273	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	2656273	2656273	C	T	SNP	CD99	ENST00000381192	human	ensembl	74_37	+1	known	missense	c.508	p.R170W	0.000	pfam_CD99L2	pfam_CD99L2	-	no_errors	CD99	HGNC	ENSG00000002586				289	0	0	66	51	43.5897
GYG2	0	genome.wustl.edu	37	X	2772036	2772036	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	2772036	2772036	G	T	SNP	GYG2	ENST00000381163	human	ensembl	74_37	+1	known	missense	c.258	p.K86N	0.248	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998				93	0	0	86	5	5.49451
DCAF8L1	0	genome.wustl.edu	37	X	27998805	27998805	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	27998805	27998805	T	C	SNP	DCAF8L1	ENST00000441525	human	ensembl	74_37	-1	known	missense	c.647	p.D216G	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372				61	0	0	41	12	22.6415
ARSH	0	genome.wustl.edu	37	X	2936680	2936680	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	2936680	2936680	G	A	SNP	ARSH	ENST00000381130	human	ensembl	74_37	+1	known	silent	c.870	p.G290	0.349	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSH	HGNC	ENSG00000205667				119	0	0	55	21	27.6316
TAB3	0	genome.wustl.edu	37	X	30872538	30872538	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	30872538	30872538	G	C	SNP	TAB3	ENST00000288422	human	ensembl	74_37	-1	known	missense	c.1244	p.S415C	0.999	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625				227	0	0	143	36	20.1117
MXRA5	0	genome.wustl.edu	37	X	3261860	3261860	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	3261860	3261860	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.15	p.A5	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				50	0	0	15	3	16.6667
MAGEB16	0	genome.wustl.edu	37	X	35820609	35820609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	35820609	35820609	C	T	SNP	MAGEB16	ENST00000399992	human	ensembl	74_37	+1	known	missense	c.392	p.S131L	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB16	HGNC	ENSG00000189023				46	0	0	24	3	11.1111
FAM47C	0	genome.wustl.edu	37	X	37026823	37026823	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	37026823	37026823	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.340	p.R114W	0.008	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				272	0	0	129	10	7.19424
MED14	0	genome.wustl.edu	37	X	40542153	40542153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	40542153	40542153	C	T	SNP	MED14	ENST00000324817	human	ensembl	74_37	-1	known	missense	c.2153	p.R718H	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182				163	0	0	66	27	29.0323
CXorf36	0	genome.wustl.edu	37	X	45010795	45010795	+	RNA	SNP	T	T	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	45010795	45010795	T	A	SNP	CXorf36	ENST00000477281	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CXorf36	HGNC	ENSG00000147113				20	0	0	13	6	31.5789
CXorf36	0	genome.wustl.edu	37	X	45010931	45010931	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	45010931	45010931	C	T	SNP	CXorf36	ENST00000398000	human	ensembl	74_37	-1	known	missense	c.1268	p.R423H	1.000	NULL	NULL	-	no_errors	CXorf36	HGNC	ENSG00000147113				187	0	0	59	25	29.7619
SYN1	0	genome.wustl.edu	37	X	47478909	47478909	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	47478909	47478909	G	A	SNP	SYN1	ENST00000295987	human	ensembl	74_37	-1	known	silent	c.219	p.G73	0.987	NULL	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN1	HGNC	ENSG00000008056				46	0	0	5	8	61.5385
SLC38A5	0	genome.wustl.edu	37	X	48319068	48319068	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	48319068	48319068	C	T	SNP	SLC38A5	ENST00000317669	human	ensembl	74_37	-1	known	silent	c.1035	p.A345	0.025	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A5	HGNC	ENSG00000017483				93	0	0	23	8	25.8065
TBC1D25	0	genome.wustl.edu	37	X	48418771	48418771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	48418771	48418771	G	A	SNP	TBC1D25	ENST00000376771	human	ensembl	74_37	+1	known	missense	c.1475	p.S492N	0.280	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354				117	0	0	39	16	29.0909
ERAS	0	genome.wustl.edu	37	X	48687628	48687628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	48687628	48687628	G	A	SNP	ERAS	ENST00000338270	human	ensembl	74_37	+1	known	missense	c.95	p.R32H	0.016	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ERAS	HGNC	ENSG00000187682				31	0	0	15	5	25
KDM5C	0	genome.wustl.edu	37	X	53227713	53227713	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	53227713	53227713	G	A	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	silent	c.2475	p.C825	0.002	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				37	0	0	9	7	43.75
KDM5C	0	genome.wustl.edu	37	X	53247013	53247013	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	53247013	53247013	G	A	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	missense	c.487	p.P163S	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				95	0	0	35	13	27.0833
FGD1	0	genome.wustl.edu	37	X	54496845	54496845	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	54496845	54496845	G	A	SNP	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	silent	c.705	p.S235	0.965	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302				41	0	0	14	10	41.6667
ITIH6	0	genome.wustl.edu	37	X	54800553	54800553	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	54800553	54800553	A	G	SNP	ITIH6	ENST00000218436	human	ensembl	74_37	-1	known	silent	c.864	p.I288	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH6	HGNC	ENSG00000102313				56	0	0	30	6	16.6667
NLGN4X	0	genome.wustl.edu	37	X	5811220	5811220	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	5811220	5811220	A	G	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	missense	c.2149	p.Y717H	0.997	prints_Neuroligin	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				160	0	0	83	44	34.6457
ZC3H12B	0	genome.wustl.edu	37	X	64721989	64721989	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	64721989	64721989	G	C	SNP	ZC3H12B	ENST00000338957	human	ensembl	74_37	+1	known	missense	c.1411	p.V471L	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053				185	0	0	63	32	33.6842
LAS1L	0	genome.wustl.edu	37	X	64749526	64749526	+	Silent	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	64749526	64749526	G	A	SNP	LAS1L	ENST00000374811	human	ensembl	74_37	-1	known	silent	c.747	p.S249	0.031	NULL	pfam_Las1	-	no_errors	LAS1L	HGNC	ENSG00000001497				173	0	0	59	24	28.9157
AR	0	genome.wustl.edu	37	X	66766153	66766153	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	66766153	66766153	C	A	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	missense	c.1165	p.L389M	1.000	pfam_Andrgn_rcpt,prints_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				31	0	0	9	3	25
OPHN1	0	genome.wustl.edu	37	X	67293124	67293124	+	Silent	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	67293124	67293124	A	G	SNP	OPHN1	ENST00000355520	human	ensembl	74_37	-1	known	silent	c.1704	p.P568	0.977	superfamily_Rho_GTPase_activation_prot	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482				100	0	0	32	8	20
FAM155B	0	genome.wustl.edu	37	X	68725895	68725895	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	68725895	68725895	C	T	SNP	FAM155B	ENST00000252338	human	ensembl	74_37	+1	known	missense	c.770	p.A257V	1.000	NULL	NULL	-	no_errors	FAM155B	HGNC	ENSG00000130054				44	0	0	14	8	36.3636
DLG3	0	genome.wustl.edu	37	X	69720431	69720431	+	Splice_Site	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	69720431	69720431	G	A	SNP	DLG3	ENST00000194900	human	ensembl	74_37	+1	known	splice_site	c.2351+1	e19+1	1.000	-	-	-	no_errors	DLG3	HGNC	ENSG00000082458				111	0	0	46	12	20.6897
MED12	0	genome.wustl.edu	37	X	70348159	70348159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	70348159	70348159	G	A	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	missense	c.3223	p.A1075T	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				167	0	0	64	34	34.6939
ACRC	0	genome.wustl.edu	37	X	70823942	70823942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	70823942	70823942	C	T	SNP	ACRC	ENST00000373695	human	ensembl	74_37	+1	known	missense	c.815	p.S272L	0.000	NULL	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174				408	0	0	176	70	28.4553
SLC16A2	0	genome.wustl.edu	37	X	73744204	73744204	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	73744204	73744204	C	A	SNP	SLC16A2	ENST00000276033	human	ensembl	74_37	+1	known	missense	c.808	p.L270M	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A2	HGNC	ENSG00000147100				119	0	0	35	13	27.0833
UPRT	0	genome.wustl.edu	37	X	74517420	74517420	+	RNA	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	74517420	74517420	T	C	SNP	UPRT	ENST00000531704	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UPRT	HGNC	ENSG00000094841				109	0	0	52	11	17.4603
MAGEE2	0	genome.wustl.edu	37	X	75004553	75004553	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	75004553	75004553	A	C	SNP	MAGEE2	ENST00000373359	human	ensembl	74_37	-1	known	missense	c.334	p.S112A	0.139	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675				63	0	0	22	6	21.4286
ATRX	0	genome.wustl.edu	37	X	76814141	76814141	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	76814141	76814141	T	C	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.6503	p.Q2168R	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				158	0	0	85	45	34.6154
MAGT1	0	genome.wustl.edu	37	X	77111078	77111078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	77111078	77111078	G	A	SNP	MAGT1	ENST00000358075	human	ensembl	74_37	-1	known	missense	c.778	p.L260F	1.000	pfam_OligosaccharylTrfase_OST3/OST6	pfam_OligosaccharylTrfase_OST3/OST6,superfamily_Thioredoxin-like_fold	-	no_errors	MAGT1	HGNC	ENSG00000102158				96	0	0	38	8	17.3913
PGAM4	0	genome.wustl.edu	37	X	77224949	77224949	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	77224949	77224949	C	T	SNP	PGAM4	ENST00000458128	human	ensembl	74_37	-1	known	missense	c.187	p.V63M	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	PGAM4	HGNC	ENSG00000226784				295	1	0.337838	116	42	26.5823
DACH2	0	genome.wustl.edu	37	X	85769380	85769380	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	85769380	85769380	T	G	SNP	DACH2	ENST00000373125	human	ensembl	74_37	+1	known	missense	c.626	p.L209R	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733				55	0	0	13	5	27.7778
KLHL4	0	genome.wustl.edu	37	X	86890732	86890732	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	86890732	86890732	C	A	SNP	KLHL4	ENST00000373114	human	ensembl	74_37	+1	known	missense	c.1882	p.P628T	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271				116	0	0	27	19	41.3043
CPXCR1	0	genome.wustl.edu	37	X	88008751	88008751	+	Silent	SNP	C	C	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	88008751	88008751	C	A	SNP	CPXCR1	ENST00000276127	human	ensembl	74_37	+1	known	silent	c.336	p.S112	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	CPXCR1	HGNC	ENSG00000147183				66	0	0	21	17	44.7368
PABPC5	0	genome.wustl.edu	37	X	90690585	90690585	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	90690585	90690585	C	T	SNP	PABPC5	ENST00000312600	human	ensembl	74_37	+1	known	silent	c.9	p.S3	0.996	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC5	HGNC	ENSG00000174740				86	0	0	21	6	22.2222
PABPC5	0	genome.wustl.edu	37	X	90690988	90690988	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	90690988	90690988	G	A	SNP	PABPC5	ENST00000312600	human	ensembl	74_37	+1	known	missense	c.412	p.V138I	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC5	HGNC	ENSG00000174740				204	0	0	53	21	28.3784
SHROOM2	0	genome.wustl.edu	37	X	9864049	9864049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	9864049	9864049	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	missense	c.2101	p.D701N	1.000	pfam_ASD1	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				40	0	0	12	9	42.8571
SHROOM2	0	genome.wustl.edu	37	X	9905625	9905625	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	9905625	9905625	A	G	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	missense	c.4039	p.M1347V	1.000	pfam_ASD2	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				66	0	0	39	15	27.7778
PCDH19	0	genome.wustl.edu	37	X	99551563	99551563	+	Silent	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	99551563	99551563	C	T	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	silent	c.3159	p.R1053	0.998	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				66	0	0	33	10	23.2558
PCDH19	0	genome.wustl.edu	37	X	99662739	99662739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	99662739	99662739	C	T	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	missense	c.857	p.R286H	0.274	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				216	1	0.460829	62	24	27.907
COL11A1	0	genome.wustl.edu	37	1	103364326	103364326	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	103364326	103364326	C	-	DEL	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	frame_shift_del	c.4180	p.E1394fs	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				70	0	0	36	7	16.2791
APITD1-CORT	0	genome.wustl.edu	37	1	10511575	10511575	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	10511575	10511575	C	-	DEL	APITD1-CORT	ENST00000400900	human	ensembl	74_37	+1	known	frame_shift_del	c.418	p.Q142fs	0.032	NULL	pfam_Somatostatin/Cortistatin_C,superfamily_Histone-fold	-	no_errors	APITD1-CORT	HGNC	ENSG00000251503				58	0	0	19	7	26.9231
NTNG1	0	genome.wustl.edu	37	1	107950324	107950325	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	107950324	107950325	-	T	INS	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	frame_shift_ins	c.1081_1082	p.G362fs	1.000:1.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				107	0	0	60	28	31.8182
NOTCH2	0	genome.wustl.edu	37	1	120480571	120480571	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	120480571	120480571	T	-	DEL	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	frame_shift_del	c.3246	p.A1083fs	0.661	pirsf_Notch,pfam_EG-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				78	0	0	46	10	17.8571
MXRA8	0	genome.wustl.edu	37	1	1290110	1290110	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	1290110	1290110	G	-	DEL	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	frame_shift_del	c.901	p.R301fs	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				34	0	0	7	2	22.2222
ECM1	0	genome.wustl.edu	37	1	150484010	150484010	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	150484010	150484010	G	-	DEL	ECM1	ENST00000369049	human	ensembl	74_37	+1	known	frame_shift_del	c.867	p.E291fs	0.926	pfam_ECM1,superfamily_Serum_albumin-like	pfam_ECM1,superfamily_Serum_albumin-like	-	no_errors	ECM1	HGNC	ENSG00000143369				107	0	0	44	20	31.25
HORMAD1	0	genome.wustl.edu	37	1	150676776	150676776	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	150676776	150676776	T	-	DEL	HORMAD1	ENST00000361824	human	ensembl	74_37	-1	known	frame_shift_del	c.848	p.N283fs	0.000	NULL	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD1	HGNC	ENSG00000143452				40	0	0	13	11	45.8333
DENND4B	0	genome.wustl.edu	37	1	153916623	153916623	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	153916623	153916623	G	-	DEL	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	frame_shift_del	c.228	p.L77fs	0.944	pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				71	0	0	16	7	30.4348
SHC1	0	genome.wustl.edu	37	1	154942911	154942911	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	154942911	154942911	G	-	DEL	SHC1	ENST00000368445	human	ensembl	74_37	-1	known	frame_shift_del	c.92	p.P31fs	1.000	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691				131	0	0	34	10	22.7273
YY1AP1	0	genome.wustl.edu	37	1	155630290	155630290	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	155630290	155630290	C	-	DEL	YY1AP1	ENST00000368339	human	ensembl	74_37	-1	known	frame_shift_del	c.1825	p.V609fs	0.138	NULL	NULL	-	no_errors	YY1AP1	HGNC	ENSG00000163374				152	0	0	44	12	21.4286
ISG20L2	0	genome.wustl.edu	37	1	156696787	156696788	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	156696787	156696788	-	G	INS	ISG20L2	ENST00000313146	human	ensembl	74_37	-1	known	frame_shift_ins	c.658_657	p.C219fs	0.549:0.530	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ISG20L2	HGNC	ENSG00000143319				172	0	0	96	7	6.79612
KIRREL	0	genome.wustl.edu	37	1	158058203	158058203	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	158058203	158058203	C	-	DEL	KIRREL	ENST00000368173	human	ensembl	74_37	+1	known	frame_shift_del	c.1003	p.L337fs	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL	HGNC	ENSG00000183853				201	0	0	76	38	33.3333
CASQ1	0	genome.wustl.edu	37	1	160168836	160168837	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	160168836	160168837	-	C	INS	CASQ1	ENST00000368078	human	ensembl	74_37	+1	known	frame_shift_ins	c.977_978	p.L328fs	1.000:1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ1	HGNC	ENSG00000143318				100	0	0	53	19	26.3889
SPEN	0	genome.wustl.edu	37	1	16260655	16260655	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	16260655	16260655	A	-	DEL	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	frame_shift_del	c.7920	p.K2641fs	0.996	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				318	0	0	115	39	25.3247
C1orf112	0	genome.wustl.edu	37	1	169790867	169790867	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	169790867	169790867	T	-	DEL	C1orf112	ENST00000286031	human	ensembl	74_37	+1	known	frame_shift_del	c.750	p.F252fs	0.998	NULL	NULL	-	no_errors	C1orf112	HGNC	ENSG00000000460				93	0	0	41	12	22.6415
SLC9C2	0	genome.wustl.edu	37	1	173552688	173552688	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	173552688	173552688	A	-	DEL	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	frame_shift_del	c.597	p.F199fs	0.212	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				128	0	0	55	23	29.4872
CEP350	0	genome.wustl.edu	37	1	180063462	180063462	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	180063462	180063462	A	-	DEL	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	frame_shift_del	c.8222	p.K2743fs	0.101	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837				75	0	0	29	12	29.2683
LAMC1	0	genome.wustl.edu	37	1	183094604	183094605	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	183094604	183094605	-	T	INS	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	frame_shift_ins	c.2720_2721	p.L908fs	1.000:0.998	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				168	0	0	60	24	28.5714
C1orf21	0	genome.wustl.edu	37	1	184567582	184567582	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	184567582	184567582	A	-	DEL	C1orf21	ENST00000235307	human	ensembl	74_37	+1	known	frame_shift_del	c.314	p.I107fs	1.000	NULL	NULL	-	no_errors	C1orf21	HGNC	ENSG00000116667				62	0	0	27	11	28.9474
ASPM	0	genome.wustl.edu	37	1	197071072	197071073	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	197071072	197071073	-	A	INS	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	frame_shift_ins	c.7309_7308	p.V2436fs	0.067:0.001	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				164	0	0	96	38	28.3582
KIF14	0	genome.wustl.edu	37	1	200567386	200567387	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	200567386	200567387	-	C	INS	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	frame_shift_ins	c.2528_2527	p.V843fs	0.994:0.993	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				151	0	0	54	16	22.8571
CAMSAP2	0	genome.wustl.edu	37	1	200776602	200776602	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	200776602	200776602	T	-	DEL	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	frame_shift_del	c.498	p.Q169fs	0.252	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				178	0	0	74	31	29.5238
PPP1R12B	0	genome.wustl.edu	37	1	202462365	202462365	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	202462365	202462365	G	-	DEL	PPP1R12B	ENST00000336894	human	ensembl	74_37	+1	known	frame_shift_del	c.2065	p.E689fs	0.271	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				74	0	0	31	20	39.2157
PLEKHA6	0	genome.wustl.edu	37	1	204228411	204228411	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	204228411	204228411	C	-	DEL	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	frame_shift_del	c.982	p.V328fs	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				120	0	0	39	11	22
LAMB3	0	genome.wustl.edu	37	1	209800902	209800902	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	209800902	209800902	C	-	DEL	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	frame_shift_del	c.1311	p.S438fs	0.004	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878				116	0	0	44	11	20
FAM177B	0	genome.wustl.edu	37	1	222919894	222919895	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	222919894	222919895	AT	-	DEL	FAM177B	ENST00000360827	human	ensembl	74_37	+1	known	frame_shift_del	c.7_8	p.I3fs	0.988:0.987	NULL	NULL	-	no_errors	FAM177B	HGNC	ENSG00000197520				112	0	0	31	17	35.4167
TRIM17	0	genome.wustl.edu	37	1	228596779	228596779	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	228596779	228596779	C	-	DEL	TRIM17	ENST00000456946	human	ensembl	74_37	-1	known	frame_shift_del	c.977	p.G326fs	0.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM17	HGNC	ENSG00000162931				51	0	0	20	12	37.5
ARV1	0	genome.wustl.edu	37	1	231131567	231131568	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	231131567	231131568	AA	-	DEL	ARV1	ENST00000310256	human	ensembl	74_37	+1	known	frame_shift_del	c.510_511	p.K173fs	0.000:0.000	pfam_Arv1	pfam_Arv1	-	no_errors	ARV1	HGNC	ENSG00000173409				111	0	0	46	19	29.2308
LYST	0	genome.wustl.edu	37	1	235964219	235964220	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	235964219	235964220	-	A	INS	LYST	ENST00000389793	human	ensembl	74_37	-1	known	frame_shift_ins	c.3891_3890	p.L1297fs	1.000:1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				93	0	0	47	12	20.339
LYST	0	genome.wustl.edu	37	1	235966262	235966264	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	235966262	235966264	CTT	-	DEL	LYST	ENST00000389793	human	ensembl	74_37	-1	known	in_frame_del	c.3658_3656	p.E1219in_frame_del	1.000:1.000:1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				74	0	0	49	11	18.3333
WDR64	0	genome.wustl.edu	37	1	241850767	241850767	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	241850767	241850767	A	-	DEL	WDR64	ENST00000366552	human	ensembl	74_37	+1	known	frame_shift_del	c.814	p.R273fs	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843				70	0	0	30	18	37.5
ARID1A	0	genome.wustl.edu	37	1	27088682	27088682	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	27088682	27088682	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.2291	p.Q766fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				215	0	0	78	27	25.7143
RNF19B	0	genome.wustl.edu	37	1	33402541	33402541	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	33402541	33402541	G	-	DEL	RNF19B	ENST00000373456	human	ensembl	74_37	-1	known	frame_shift_del	c.2065	p.R689fs	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19B	HGNC	ENSG00000116514				188	0	0	104	25	19.3798
ZNF362	0	genome.wustl.edu	37	1	33741738	33741738	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	33741738	33741738	C	-	DEL	ZNF362	ENST00000373428	human	ensembl	74_37	+1	known	frame_shift_del	c.76	p.P27fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094				177	0	0	34	9	20.9302
HIVEP3	0	genome.wustl.edu	37	1	42048868	42048868	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	42048868	42048868	G	-	DEL	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	frame_shift_del	c.1601	p.P534fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				207	0	0	62	22	26.1905
SLC2A1	0	genome.wustl.edu	37	1	43392779	43392779	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	43392779	43392779	C	-	DEL	SLC2A1	ENST00000426263	human	ensembl	74_37	-1	known	frame_shift_del	c.1412	p.G471fs	0.536	prints_Glu_transpt_1	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394				157	0	0	49	22	30.9859
WDR63	0	genome.wustl.edu	37	1	85547083	85547084	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	85547083	85547084	-	A	INS	WDR63	ENST00000294664	human	ensembl	74_37	+1	known	frame_shift_ins	c.270_271	p.I92fs	1.000:1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR63	HGNC	ENSG00000162643				223	0	0	84	20	19.2308
SYDE2	0	genome.wustl.edu	37	1	85666150	85666150	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	85666150	85666150	C	-	DEL	SYDE2	ENST00000341460	human	ensembl	74_37	-1	known	frame_shift_del	c.530	p.G177fs	0.003	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE2	HGNC	ENSG00000097096				174	0	0	61	15	19.7368
LRRC8D	0	genome.wustl.edu	37	1	90400706	90400707	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	90400706	90400707	-	A	INS	LRRC8D	ENST00000337338	human	ensembl	74_37	+1	known	frame_shift_ins	c.2079_2080	p.I694fs	0.969:1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492				142	0	0	83	16	16.1616
ZNF644	0	genome.wustl.edu	37	1	91403294	91403296	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	91403294	91403296	CTT	-	DEL	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	in_frame_del	c.3436_3434	p.E1145in_frame_del	1.000:1.000:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				335	0	0	158	46	22.549
CCDC18	0	genome.wustl.edu	37	1	93667516	93667516	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	1	93667516	93667516	A	-	DEL	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	frame_shift_del	c.1120	p.V377fs	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				82	0	0	36	12	25
CHUK	0	genome.wustl.edu	37	10	101953779	101953779	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	101953779	101953779	T	-	DEL	CHUK	ENST00000370397	human	ensembl	74_37	-1	known	frame_shift_del	c.1936	p.R646fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CHUK	HGNC	ENSG00000213341				112	0	0	61	19	23.75
CNNM2	0	genome.wustl.edu	37	10	104678873	104678874	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	104678873	104678874	-	G	INS	CNNM2	ENST00000369878	human	ensembl	74_37	+1	known	frame_shift_ins	c.636_637	p.K214fs	0.414:0.996	NULL	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842				98	0	0	28	12	30
C10orf137	0	genome.wustl.edu	37	10	127412385	127412385	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	127412385	127412385	A	-	DEL	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	frame_shift_del	c.390	p.K132fs	0.995	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				230	0	0	58	33	36.2637
UROS	0	genome.wustl.edu	37	10	127483544	127483544	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	127483544	127483544	C	-	DEL	UROS	ENST00000368786	human	ensembl	74_37	-1	known	frame_shift_del	c.565	p.V189fs	0.000	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	-	no_errors	UROS	HGNC	ENSG00000188690				117	0	0	31	15	32.6087
FRG2B	0	genome.wustl.edu	37	10	135440178	135440179	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	135440178	135440179	-	G	INS	FRG2B	ENST00000425520	human	ensembl	74_37	-1	known	frame_shift_ins	c.69_68	p.Q25fs	0.030:0.035	NULL	NULL	-	no_errors	FRG2B	HGNC	ENSG00000225899				549	0	0	243	13	5.07812
FRMD4A	0	genome.wustl.edu	37	10	13696452	13696453	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	13696452	13696453	GG	-	DEL	FRMD4A	ENST00000357447	human	ensembl	74_37	-1	known	frame_shift_del	c.3014_3013	p.P1005fs	1.000:1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474				192	0	0	60	10	14.2857
CCDC7	0	genome.wustl.edu	37	10	32833205	32833205	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	32833205	32833205	A	-	DEL	CCDC7	ENST00000277657	human	ensembl	74_37	+1	known	frame_shift_del	c.1110	p.E372fs	0.121	NULL	NULL	-	no_errors	CCDC7	HGNC	ENSG00000216937				170	0	0	108	36	25
CSTF2T	0	genome.wustl.edu	37	10	53459246	53459247	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	53459246	53459247	-	C	INS	CSTF2T	ENST00000331173	human	ensembl	74_37	-1	known	frame_shift_ins	c.64_63	p.N21fs	0.999:0.942	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613				408	0	0	131	37	22.0238
ITIH5	0	genome.wustl.edu	37	10	7679376	7679376	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	7679376	7679376	A	-	DEL	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.F156fs	0.843	pfam_VIT,smart_VIT	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				122	0	0	49	15	23.4375
ANKRD1	0	genome.wustl.edu	37	10	92675945	92675945	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	92675945	92675945	T	-	DEL	ANKRD1	ENST00000371697	human	ensembl	74_37	-1	known	frame_shift_del	c.634	p.I212fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD1	HGNC	ENSG00000148677				93	0	0	48	16	25
MYOF	0	genome.wustl.edu	37	10	95168550	95168550	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	10	95168550	95168550	A	-	DEL	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	frame_shift_del	c.723	p.F241fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				145	0	0	52	18	25.7143
MUC6	0	genome.wustl.edu	37	11	1027294	1027295	+	Frame_Shift_Ins	INS	-	-	TGCT			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	1027294	1027295	-	TGCT	INS	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	frame_shift_ins	c.2205_2204	p.S736fs	0.929:0.938	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				418	0	0	119	40	25.1572
NPAT	0	genome.wustl.edu	37	11	108044068	108044069	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	108044068	108044069	-	T	INS	NPAT	ENST00000278612	human	ensembl	74_37	-1	known	frame_shift_ins	c.1643_1642	p.S548fs	0.000:0.000	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308				97	0	0	68	26	27.6596
ATM	0	genome.wustl.edu	37	11	108160451	108160451	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	108160451	108160451	A	-	DEL	ATM	ENST00000278616	human	ensembl	74_37	+1	known	frame_shift_del	c.4359	p.S1455fs	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				57	0	0	62	32	34.0426
DLAT	0	genome.wustl.edu	37	11	111904183	111904183	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	111904183	111904183	A	-	DEL	DLAT	ENST00000280346	human	ensembl	74_37	+1	known	frame_shift_del	c.716	p.V242fs	1.000	pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl,tigrfam_LAT1	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl,tigrfam_LAT1	-	no_errors	DLAT	HGNC	ENSG00000150768				44	0	0	33	7	17.5
KMT2A	0	genome.wustl.edu	37	11	118344185	118344186	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	118344185	118344186	-	C	INS	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	frame_shift_ins	c.2311_2312	p.S774fs	1.000:1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				329	0	0	164	43	20.7729
BCL9L	0	genome.wustl.edu	37	11	118779296	118779296	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	118779296	118779296	G	-	DEL	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	frame_shift_del	c.95	p.P32fs	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				225	0	0	87	21	19.4444
MFRP	0	genome.wustl.edu	37	11	119215690	119215690	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	119215690	119215690	G	-	DEL	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	frame_shift_del	c.666	p.T223fs	0.024	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				26	0	0	9	5	35.7143
IGSF9B	0	genome.wustl.edu	37	11	133801456	133801456	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	133801456	133801456	G	-	DEL	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	frame_shift_del	c.1260	p.Y421fs	0.999	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854				107	0	0	30	15	33.3333
NCAPD3	0	genome.wustl.edu	37	11	134048586	134048586	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	134048586	134048586	G	-	DEL	NCAPD3	ENST00000534548	human	ensembl	74_37	-1	known	frame_shift_del	c.2725	p.Q909fs	1.000	superfamily_ARM-type_fold,pirsf_NCAPD3	superfamily_ARM-type_fold,pirsf_NCAPD3	-	no_errors	NCAPD3	HGNC	ENSG00000151503				179	0	0	97	21	17.7966
PAX6	0	genome.wustl.edu	37	11	31812317	31812317	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	31812317	31812317	G	-	DEL	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	frame_shift_del	c.1166	p.P389fs	1.000	NULL	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372				123	0	0	47	12	20.339
CCDC73	0	genome.wustl.edu	37	11	32637520	32637520	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	32637520	32637520	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.1341	p.E448fs	0.000	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				66	0	0	22	7	24.1379
CSTF3	0	genome.wustl.edu	37	11	33106678	33106679	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	33106678	33106679	-	G	INS	CSTF3	ENST00000323959	human	ensembl	74_37	-1	known	frame_shift_ins	c.2109_2108	p.V704fs	0.316:0.999	NULL	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102				133	0	0	57	14	19.7183
CSTF3	0	genome.wustl.edu	37	11	33129474	33129474	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	33129474	33129474	T	-	DEL	CSTF3	ENST00000323959	human	ensembl	74_37	-1	known	frame_shift_del	c.331	p.T111fs	1.000	NULL	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102				59	0	0	39	18	31.5789
API5	0	genome.wustl.edu	37	11	43350435	43350436	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	43350435	43350436	-	A	INS	API5	ENST00000531273	human	ensembl	74_37	+1	known	frame_shift_ins	c.1119_1120	p.I374fs	1.000:1.000	pfam_API5,superfamily_ARM-type_fold	pfam_API5,superfamily_ARM-type_fold	-	no_errors	API5	HGNC	ENSG00000166181				124	0	0	70	16	18.6047
DGKZ	0	genome.wustl.edu	37	11	46393274	46393275	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	46393274	46393275	-	C	INS	DGKZ	ENST00000454345	human	ensembl	74_37	+1	known	frame_shift_ins	c.1344_1345	p.K448fs	1.000:1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKZ	HGNC	ENSG00000149091				38	0	0	29	9	23.6842
OR4C46	0	genome.wustl.edu	37	11	51515366	51515366	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	51515366	51515366	T	-	DEL	OR4C46	ENST00000328188	human	ensembl	74_37	+1	known	frame_shift_del	c.85	p.F30fs	0.047	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C46	HGNC	ENSG00000185926				283	0	0	123	44	26.3473
OSBP	0	genome.wustl.edu	37	11	59376060	59376061	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	59376060	59376061	CT	-	DEL	OSBP	ENST00000263847	human	ensembl	74_37	-1	known	frame_shift_del	c.719_718	p.S240fs	0.995:1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP	HGNC	ENSG00000110048				163	0	0	91	38	29.4574
SCGB1A1	0	genome.wustl.edu	37	11	62190532	62190532	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	62190532	62190532	A	-	DEL	SCGB1A1	ENST00000278282	human	ensembl	74_37	+1	known	frame_shift_del	c.245	p.I84fs	0.034	pfam_Secretoglobin,superfamily_Secretoglobin,smart_Secretoglobin,prints_Uteroglobin	pfam_Secretoglobin,superfamily_Secretoglobin,smart_Secretoglobin,prints_Uteroglobin	-	no_errors	SCGB1A1	HGNC	ENSG00000149021				297	0	0	124	20	13.8889
SLC22A10	0	genome.wustl.edu	37	11	63070011	63070012	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	63070011	63070012	-	A	INS	SLC22A10	ENST00000332793	human	ensembl	74_37	+1	known	frame_shift_ins	c.1281_1282	p.E428fs	0.007:0.409	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999				77	0	0	43	20	31.746
MALAT1	0	genome.wustl.edu	37	11	65269498	65269498	+	RNA	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	65269498	65269498	T	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				62	0	0	22	11	33.3333
FIBP	0	genome.wustl.edu	37	11	65653050	65653051	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	65653050	65653051	AA	-	DEL	FIBP	ENST00000338369	human	ensembl	74_37	-1	known	frame_shift_del	c.597_596	p.F199fs	0.999:1.000	pfam_FIBP	pfam_FIBP	-	no_errors	FIBP	HGNC	ENSG00000172500				227	0	0	80	48	37.5
C11orf80	0	genome.wustl.edu	37	11	66605851	66605851	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	66605851	66605851	A	-	DEL	C11orf80	ENST00000360962	human	ensembl	74_37	+1	known	frame_shift_del	c.1682	p.K563fs	0.458	NULL	NULL	-	no_errors	C11orf80	HGNC	ENSG00000173715				104	0	0	48	12	20
RNF169	0	genome.wustl.edu	37	11	74547254	74547254	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	74547254	74547254	G	-	DEL	RNF169	ENST00000299563	human	ensembl	74_37	+1	known	frame_shift_del	c.1606	p.G537fs	0.048	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF169	HGNC	ENSG00000166439				213	0	0	137	37	21.2644
NEU3	0	genome.wustl.edu	37	11	74705655	74705655	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	11	74705655	74705655	C	-	DEL	NEU3	ENST00000294064	human	ensembl	74_37	+1	known	frame_shift_del	c.196	p.T68fs	0.478	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU3	HGNC	ENSG00000162139				206	0	0	99	23	18.8525
POLR3B	0	genome.wustl.edu	37	12	106850939	106850939	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	106850939	106850939	A	-	DEL	POLR3B	ENST00000228347	human	ensembl	74_37	+1	known	frame_shift_del	c.2317	p.N774fs	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR3B	HGNC	ENSG00000013503				146	0	0	70	25	26.3158
MVK	0	genome.wustl.edu	37	12	110019240	110019240	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	110019240	110019240	C	-	DEL	MVK	ENST00000228510	human	ensembl	74_37	+1	known	frame_shift_del	c.412	p.A141fs	1.000	pfam_GHMP_kinase_N_dom,superfamily_Ribosomal_S5_D2-typ_fold,prints_Mevalonate/galactokinase,prints_Galkinase,tigrfam_Mev_gal_kin	pfam_GHMP_kinase_N_dom,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,prints_Mevalonate/galactokinase,prints_Galkinase,tigrfam_Mev_gal_kin	-	no_errors	MVK	HGNC	ENSG00000110921				157	0	0	36	13	26.5306
CUX2	0	genome.wustl.edu	37	12	111785646	111785647	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	111785646	111785647	-	C	INS	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	frame_shift_ins	c.3978_3979	p.K1328fs	0.000:0.007	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				240	0	0	68	24	26.087
KDM2B	0	genome.wustl.edu	37	12	121880228	121880228	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	121880228	121880228	G	-	DEL	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	frame_shift_del	c.3016	p.R1006fs	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				40	0	0	10	7	41.1765
HPD	0	genome.wustl.edu	37	12	122281717	122281718	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	122281717	122281718	CT	-	DEL	HPD	ENST00000289004	human	ensembl	74_37	-1	known	frame_shift_del	c.853_852	p.G285fs	1.000:0.977	pfam_Glyas_Fos-R_dOase_dom,pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	pfam_Glyas_Fos-R_dOase_dom,pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	-	no_errors	HPD	HGNC	ENSG00000158104				106	0	0	39	13	25
KNTC1	0	genome.wustl.edu	37	12	123087620	123087620	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	123087620	123087620	A	-	DEL	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	frame_shift_del	c.4931	p.K1646fs	1.000	pfam_RZZ-complex_KNTC1/ROD_C	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				58	0	0	24	6	20
ATP6V0A2	0	genome.wustl.edu	37	12	124233282	124233284	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	124233282	124233284	AAC	-	DEL	ATP6V0A2	ENST00000330342	human	ensembl	74_37	+1	known	in_frame_del	c.1885_1887	p.N629in_frame_del	1.000:1.000:1.000	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A2	HGNC	ENSG00000185344				219	0	0	74	30	28.8462
DUSP16	0	genome.wustl.edu	37	12	12672854	12672854	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	12672854	12672854	A	-	DEL	DUSP16	ENST00000228862	human	ensembl	74_37	-1	known	frame_shift_del	c.309	p.L104fs	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266				125	0	0	47	37	44.0476
POLE	0	genome.wustl.edu	37	12	133254022	133254023	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	133254022	133254023	-	A	INS	POLE	ENST00000320574	human	ensembl	74_37	-1	known	frame_shift_ins	c.728_727	p.W243fs	1.000:1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				129	0	0	50	11	18.0328
GUCY2C	0	genome.wustl.edu	37	12	14778829	14778829	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	14778829	14778829	T	-	DEL	GUCY2C	ENST00000261170	human	ensembl	74_37	-1	known	frame_shift_del	c.2270	p.N757fs	0.989	superfamily_Kinase-like_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_A/G_cyclase,superfamily_Peripla_BP_I,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019				100	0	0	61	35	36.4583
TM7SF3	0	genome.wustl.edu	37	12	27126980	27126981	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	27126980	27126981	CT	-	DEL	TM7SF3	ENST00000343028	human	ensembl	74_37	-1	known	frame_shift_del	c.1631_1630	p.R544fs	1.000:1.000	NULL	NULL	-	no_errors	TM7SF3	HGNC	ENSG00000064115				184	0	0	95	22	18.8034
GXYLT1	0	genome.wustl.edu	37	12	42491721	42491722	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	42491721	42491722	-	A	INS	GXYLT1	ENST00000398675	human	ensembl	74_37	-1	known	frame_shift_ins	c.979_978	p.H326fs	1.000:1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233				65	0	0	52	21	28.7671
SCAF11	0	genome.wustl.edu	37	12	46320657	46320658	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	46320657	46320658	-	G	INS	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	frame_shift_ins	c.2827_2826	p.S942fs	0.994:0.910	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218				240	0	0	141	60	29.8507
DYRK4	0	genome.wustl.edu	37	12	4719362	4719362	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	4719362	4719362	A	-	DEL	DYRK4	ENST00000010132	human	ensembl	74_37	+1	known	frame_shift_del	c.1057	p.R355fs	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219				124	0	0	61	28	31.4607
KMT2D	0	genome.wustl.edu	37	12	49432347	49432347	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	49432347	49432347	G	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.8792	p.P2931fs	0.976	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				182	0	0	52	10	16.129
NACA	0	genome.wustl.edu	37	12	57110635	57110635	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	57110635	57110635	T	-	DEL	NACA	ENST00000454682	human	ensembl	74_37	-1	known	frame_shift_del	c.4679	p.K1560fs	0.000	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACA	HGNC	ENSG00000196531				80	0	0	22	8	26.6667
MIR1228	0	genome.wustl.edu	37	12	57588352	57588352	+	RNA	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	57588352	57588352	C	-	DEL	MIR1228	ENST00000408438	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR1228	HGNC	ENSG00000221365				169	0	0	46	18	28.125
MBD6	0	genome.wustl.edu	37	12	57921002	57921002	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	57921002	57921002	C	-	DEL	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	frame_shift_del	c.2074	p.Q694fs	0.764	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				25	0	0	7	6	46.1538
NUP107	0	genome.wustl.edu	37	12	69126428	69126428	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	69126428	69126428	A	-	DEL	NUP107	ENST00000229179	human	ensembl	74_37	+1	known	frame_shift_del	c.2010	p.I672fs	0.951	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581				76	0	0	32	9	21.9512
LPCAT3	0	genome.wustl.edu	37	12	7086386	7086388	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	7086386	7086388	GAA	-	DEL	LPCAT3	ENST00000261407	human	ensembl	74_37	-1	known	in_frame_del	c.1386_1384	p.F462in_frame_del	0.998:1.000:1.000	NULL	pfam_MBOAT_fam	-	no_errors	LPCAT3	HGNC	ENSG00000111684				111	0	0	86	15	14.8515
ZFC3H1	0	genome.wustl.edu	37	12	72038781	72038781	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	72038781	72038781	T	-	DEL	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	frame_shift_del	c.1155	p.K385fs	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				82	0	0	32	12	27.2727
LRRIQ1	0	genome.wustl.edu	37	12	85449692	85449692	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	85449692	85449692	A	-	DEL	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	frame_shift_del	c.1121	p.R375fs	0.817	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				99	0	0	50	13	20.6349
MGAT4C	0	genome.wustl.edu	37	12	86373479	86373479	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	86373479	86373479	G	-	DEL	MGAT4C	ENST00000393205	human	ensembl	74_37	-1	known	frame_shift_del	c.1112	p.P371fs	1.000	NULL	pfam_Glyco_transf_54,superfamily_LSM_dom	-	no_errors	MGAT4C	HGNC	ENSG00000182050				113	0	0	68	24	26.087
CEP290	0	genome.wustl.edu	37	12	88453675	88453675	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	88453675	88453675	T	-	DEL	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_del	c.6651	p.E2218fs	0.999	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				28	0	0	6	5	45.4545
CCER1	0	genome.wustl.edu	37	12	91347369	91347369	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	91347369	91347369	A	-	DEL	CCER1	ENST00000358859	human	ensembl	74_37	-1	known	frame_shift_del	c.1151	p.L384fs	0.235	NULL	NULL	-	no_errors	CCER1	HGNC	ENSG00000197651				168	0	0	56	25	30.8642
ELK3	0	genome.wustl.edu	37	12	96641028	96641029	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	96641028	96641029	-	C	INS	ELK3	ENST00000228741	human	ensembl	74_37	+1	known	frame_shift_ins	c.518_519	p.V176fs	0.017:0.019	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK3	HGNC	ENSG00000111145				85	0	0	28	20	41.6667
ANKS1B	0	genome.wustl.edu	37	12	99446957	99446958	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	12	99446957	99446958	-	T	INS	ANKS1B	ENST00000329257	human	ensembl	74_37	-1	known	frame_shift_ins	c.2756_2755	p.I919fs	1.000:1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046				38	0	0	15	7	31.8182
ZMYM5	0	genome.wustl.edu	37	13	20426142	20426143	+	In_Frame_Ins	INS	-	-	CAT			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	20426142	20426143	-	CAT	INS	ZMYM5	ENST00000337963	human	ensembl	74_37	-1	known	in_frame_ins	c.179_178	p.60in_frame_insD	1.000:0.996	NULL	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM5	HGNC	ENSG00000132950				135	0	0	97	19	16.3793
MICU2	0	genome.wustl.edu	37	13	22069460	22069460	+	RNA	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	22069460	22069460	A	-	DEL	MICU2	ENST00000479790	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	MICU2	HGNC	ENSG00000165487				62	0	0	25	10	28.5714
SACS	0	genome.wustl.edu	37	13	23909643	23909643	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	23909643	23909643	T	-	DEL	SACS	ENST00000382292	human	ensembl	74_37	-1	known	frame_shift_del	c.8372	p.K2791fs	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				109	0	0	63	6	8.69565
BRCA2	0	genome.wustl.edu	37	13	32930668	32930668	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	32930668	32930668	A	-	DEL	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	frame_shift_del	c.7539	p.T2515fs	0.020	pfam_DNA_recomb/repair_BRCA2_hlx,superfamily_DNA_recomb/repair_BRCA2_hlx,pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				315	0	0	117	41	25.9494
RFC3	0	genome.wustl.edu	37	13	34398063	34398064	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	34398063	34398064	AA	-	DEL	RFC3	ENST00000380071	human	ensembl	74_37	+1	known	frame_shift_del	c.235_236	p.K81fs	1.000:1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC3	HGNC	ENSG00000133119				29	0	0	19	10	34.4828
NBEA	0	genome.wustl.edu	37	13	35736024	35736025	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	13	35736024	35736025	-	T	INS	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	frame_shift_ins	c.3999_4000	p.K1334fs	1.000:1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				26	0	0	4	2	33.3333
SALL2	0	genome.wustl.edu	37	14	21993446	21993446	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	21993446	21993446	C	-	DEL	SALL2	ENST00000327430	human	ensembl	74_37	-1	known	frame_shift_del	c.416	p.G139fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821				183	0	0	54	15	21.7391
OR4E2	0	genome.wustl.edu	37	14	22133375	22133375	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	22133375	22133375	T	-	DEL	OR4E2	ENST00000408935	human	ensembl	74_37	+1	known	frame_shift_del	c.79	p.F28fs	0.750	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4E2	HGNC	ENSG00000221977				233	0	0	145	8	5.22876
KIAA0391	0	genome.wustl.edu	37	14	35592700	35592700	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	35592700	35592700	T	-	DEL	KIAA0391	ENST00000534898	human	ensembl	74_37	+1	known	frame_shift_del	c.249	p.L86fs	0.277	NULL	NULL	-	no_errors	KIAA0391	HGNC	ENSG00000100890				77	0	0	39	15	27.7778
MDGA2	0	genome.wustl.edu	37	14	47530771	47530771	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	47530771	47530771	T	-	DEL	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	frame_shift_del	c.1206	p.G403fs	1.000	NULL	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				39	0	0	31	12	27.907
NID2	0	genome.wustl.edu	37	14	52534720	52534720	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	52534720	52534720	G	-	DEL	NID2	ENST00000216286	human	ensembl	74_37	-1	known	frame_shift_del	c.390	p.A131fs	0.000	smart_Nidogen_extracell_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				66	0	0	32	12	27.2727
FERMT2	0	genome.wustl.edu	37	14	53386063	53386064	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	53386063	53386064	-	T	INS	FERMT2	ENST00000343279	human	ensembl	74_37	-1	known	frame_shift_ins	c.169_168	p.D56fs	1.000:1.000	NULL	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712				173	0	0	89	29	24.5763
SNAPC1	0	genome.wustl.edu	37	14	62242911	62242911	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	62242911	62242911	T	-	DEL	SNAPC1	ENST00000216294	human	ensembl	74_37	+1	known	frame_shift_del	c.633	p.F213fs	0.961	NULL	pfam_SNAPc_SNAP43	-	no_errors	SNAPC1	HGNC	ENSG00000023608				124	0	0	42	16	27.5862
SIPA1L1	0	genome.wustl.edu	37	14	72165808	72165809	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	72165808	72165809	-	G	INS	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	frame_shift_ins	c.3485_3486	p.T1165fs	0.693:0.341	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				143	0	0	36	27	42.8571
CCDC176	0	genome.wustl.edu	37	14	74516522	74516523	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	14	74516522	74516523	AA	-	DEL	CCDC176	ENST00000394009	human	ensembl	74_37	+1	known	frame_shift_del	c.910_911	p.K304fs	0.000:0.000	NULL	NULL	-	no_errors	CCDC176	HGNC	ENSG00000119636				98	0	0	31	24	43.6364
MKRN3	0	genome.wustl.edu	37	15	23811405	23811405	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	23811405	23811405	C	-	DEL	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	frame_shift_del	c.476	p.P161fs	0.962	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455				79	0	0	26	8	23.5294
SNHG14	0	genome.wustl.edu	37	15	25227367	25227367	+	RNA	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	25227367	25227367	T	-	DEL	SNHG14	ENST00000551361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				19	0	0	9	4	30.7692
HERC2P9	0	genome.wustl.edu	37	15	28901107	28901107	+	RNA	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	28901107	28901107	A	-	DEL	HERC2P9	ENST00000528584	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.968	-	-	-	no_errors	HERC2P9	HGNC	ENSG00000206149				132	0	0	70	6	7.89474
DISP2	0	genome.wustl.edu	37	15	40659686	40659686	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	40659686	40659686	C	-	DEL	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	frame_shift_del	c.1373	p.W460fs	0.000	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				445	0	0	172	53	23.5556
GANC	0	genome.wustl.edu	37	15	42632112	42632113	+	Splice_Site	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	42632112	42632113	-	A	INS	GANC	ENST00000318010	human	ensembl	74_37	+1	known	splice_site_ins	c.2087+2_2087+1	e17+2	1.000:0.998	-	-	-	no_errors	GANC	HGNC	ENSG00000214013				119	0	0	61	16	20.7792
FRMD5	0	genome.wustl.edu	37	15	44166366	44166366	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	44166366	44166366	C	-	DEL	FRMD5	ENST00000417257	human	ensembl	74_37	-1	known	frame_shift_del	c.1430	p.G477fs	0.998	NULL	pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FRMD5	HGNC	ENSG00000171877				219	0	0	71	33	31.7308
SPG11	0	genome.wustl.edu	37	15	44905697	44905698	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	44905697	44905698	-	T	INS	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	frame_shift_ins	c.3076_3075	p.E1025fs	1.000:1.000	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133				92	0	0	44	16	26.6667
CSNK1G1	0	genome.wustl.edu	37	15	64497118	64497118	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	64497118	64497118	T	-	DEL	CSNK1G1	ENST00000303052	human	ensembl	74_37	-1	known	frame_shift_del	c.796	p.I266fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Casein_kinase-1_gamma_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1G1	HGNC	ENSG00000169118				83	0	0	47	13	21.6667
PIAS1	0	genome.wustl.edu	37	15	68438921	68438921	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	68438921	68438921	A	-	DEL	PIAS1	ENST00000249636	human	ensembl	74_37	+1	known	frame_shift_del	c.711	p.N239fs	0.999	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS1	HGNC	ENSG00000033800				123	0	0	61	24	28.2353
GLCE	0	genome.wustl.edu	37	15	69548303	69548303	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	69548303	69548303	A	-	DEL	GLCE	ENST00000261858	human	ensembl	74_37	+1	known	frame_shift_del	c.158	p.R55fs	0.918	NULL	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604				131	0	0	69	20	22.4719
GLCE	0	genome.wustl.edu	37	15	69561312	69561312	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	69561312	69561312	A	-	DEL	GLCE	ENST00000261858	human	ensembl	74_37	+1	known	frame_shift_del	c.1583	p.K529fs	1.000	pfam_C5-epim	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604				177	0	0	86	32	27.1186
MAN2C1	0	genome.wustl.edu	37	15	75651973	75651973	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	75651973	75651973	C	-	DEL	MAN2C1	ENST00000267978	human	ensembl	74_37	-1	known	frame_shift_del	c.1936	p.A646fs	0.294	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400				86	0	0	30	15	33.3333
ISL2	0	genome.wustl.edu	37	15	76634139	76634139	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	76634139	76634139	C	-	DEL	ISL2	ENST00000290759	human	ensembl	74_37	+1	known	frame_shift_del	c.1043	p.N350fs	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	ISL2	HGNC	ENSG00000159556				174	0	0	72	18	20
ADAMTS7	0	genome.wustl.edu	37	15	79063618	79063618	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	79063618	79063618	C	-	DEL	ADAMTS7	ENST00000388820	human	ensembl	74_37	-1	known	frame_shift_del	c.2404	p.V802fs	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378				45	0	0	20	8	28.5714
SH3GL3	0	genome.wustl.edu	37	15	84241366	84241367	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	84241366	84241367	-	A	INS	SH3GL3	ENST00000324537	human	ensembl	74_37	+1	known	frame_shift_ins	c.405_406	p.D136fs	1.000:1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	SH3GL3	HGNC	ENSG00000140600				120	0	0	75	22	22.6804
BLM	0	genome.wustl.edu	37	15	91310207	91310208	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	91310207	91310208	-	A	INS	BLM	ENST00000355112	human	ensembl	74_37	+1	known	frame_shift_ins	c.2261_2262	p.D757fs	1.000:0.535	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299				159	0	0	83	30	26.5487
CHD2	0	genome.wustl.edu	37	15	93547949	93547951	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	15	93547949	93547951	GAT	-	DEL	CHD2	ENST00000557381	human	ensembl	74_37	+1	putative	in_frame_del	c.4381_4383	p.D1463in_frame_del	1.000:1.000:0.804	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575				198	0	0	137	27	16.4634
BFAR	0	genome.wustl.edu	37	16	14761545	14761545	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	14761545	14761545	T	-	DEL	BFAR	ENST00000261658	human	ensembl	74_37	+1	known	frame_shift_del	c.1214	p.F406fs	0.996	NULL	pfam_SAM_type1,pfam_Znf_C3HC4_RING-type,pfam_SAM_2,superfamily_SAM/pointed,smart_Znf_RING,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	BFAR	HGNC	ENSG00000103429				285	0	0	92	24	20.6897
PALB2	0	genome.wustl.edu	37	16	23646981	23646981	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	23646981	23646981	T	-	DEL	PALB2	ENST00000261584	human	ensembl	74_37	-1	known	frame_shift_del	c.886	p.M296fs	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093				210	0	0	119	34	22.2222
RBBP6	0	genome.wustl.edu	37	16	24582804	24582804	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	24582804	24582804	A	-	DEL	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	frame_shift_del	c.4417	p.T1475fs	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				110	0	0	49	17	25.7576
CLDN9	0	genome.wustl.edu	37	16	3063810	3063810	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	3063810	3063810	C	-	DEL	CLDN9	ENST00000445369	human	ensembl	74_37	+1	known	frame_shift_del	c.447	p.L151fs	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin9	-	no_errors	CLDN9	HGNC	ENSG00000213937				104	0	0	57	19	25
SETD1A	0	genome.wustl.edu	37	16	30977360	30977360	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	30977360	30977360	C	-	DEL	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	frame_shift_del	c.2158	p.P721fs	0.622	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				190	0	0	82	23	21.9048
PRSS36	0	genome.wustl.edu	37	16	31151942	31151942	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	31151942	31151942	G	-	DEL	PRSS36	ENST00000268281	human	ensembl	74_37	-1	known	frame_shift_del	c.2038	p.L680fs	0.448	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS36	HGNC	ENSG00000178226				45	0	0	16	7	30.4348
AXIN1	0	genome.wustl.edu	37	16	347093	347093	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	347093	347093	C	-	DEL	AXIN1	ENST00000262320	human	ensembl	74_37	-1	known	frame_shift_del	c.1918	p.E640fs	0.998	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN1	HGNC	ENSG00000103126				456	0	0	139	11	7.33333
FHOD1	0	genome.wustl.edu	37	16	67267852	67267852	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	67267852	67267852	G	-	DEL	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	frame_shift_del	c.1754	p.P585fs	1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723				46	0	0	10	6	37.5
DHX38	0	genome.wustl.edu	37	16	72137666	72137666	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	72137666	72137666	G	-	DEL	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	frame_shift_del	c.1803	p.G603fs	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				72	0	0	27	11	28.9474
RHOT2	0	genome.wustl.edu	37	16	721707	721707	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	721707	721707	C	-	DEL	RHOT2	ENST00000315082	human	ensembl	74_37	+1	known	frame_shift_del	c.880	p.G296fs	1.000	pirsf_Rho_GTPase_Mt,pfam_EF_hand_assoc_2	pirsf_Rho_GTPase_Mt,pfam_EF_hand_assoc_2,pfam_MIRO-like,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,pfscan_EF_hand_dom	-	no_errors	RHOT2	HGNC	ENSG00000140983				174	0	0	53	14	20.8955
TAF1C	0	genome.wustl.edu	37	16	84213037	84213037	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	84213037	84213037	G	-	DEL	TAF1C	ENST00000378541	human	ensembl	74_37	-1	known	frame_shift_del	c.2120	p.P707fs	0.942	NULL	superfamily_WD40_repeat_dom	-	no_errors	TAF1C	HGNC	ENSG00000103168				112	0	0	29	7	19.4444
TLDC1	0	genome.wustl.edu	37	16	84514303	84514303	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	84514303	84514303	C	-	DEL	TLDC1	ENST00000343629	human	ensembl	74_37	-1	known	frame_shift_del	c.1089	p.Q364fs	0.148	pfam_TLDc,smart_TLDc	pfam_TLDc,smart_TLDc	-	no_errors	TLDC1	HGNC	ENSG00000140950				90	0	0	47	12	20.339
ANKRD11	0	genome.wustl.edu	37	16	89349356	89349356	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	89349356	89349356	T	-	DEL	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	frame_shift_del	c.3594	p.E1199fs	0.983	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				270	0	0	97	35	26.5152
ANKRD11	0	genome.wustl.edu	37	16	89349686	89349688	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	89349686	89349688	CTC	-	DEL	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	in_frame_del	c.3264_3262	p.E1088in_frame_del	1.000:1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				256	0	0	123	48	28.0702
FANCA	0	genome.wustl.edu	37	16	89831345	89831346	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	89831345	89831346	AG	-	DEL	FANCA	ENST00000389301	human	ensembl	74_37	-1	known	frame_shift_del	c.2731_2730	p.W911fs	0.998:0.979	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741				136	0	0	48	18	27.2727
FANCA	0	genome.wustl.edu	37	16	89833613	89833614	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	16	89833613	89833614	-	AG	INS	FANCA	ENST00000389301	human	ensembl	74_37	-1	known	frame_shift_ins	c.2537_2536	p.C846fs	0.968:0.921	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741				168	0	0	59	25	29.7619
RTN4RL1	0	genome.wustl.edu	37	17	1840323	1840324	+	Frame_Shift_Ins	INS	-	-	GC			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	1840323	1840324	-	GC	INS	RTN4RL1	ENST00000331238	human	ensembl	74_37	-1	known	frame_shift_ins	c.793_792	p.S264fs	0.989:0.042	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL1	HGNC	ENSG00000185924				38	0	0	5	4	44.4444
ALDH3A1	0	genome.wustl.edu	37	17	19641649	19641649	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	19641649	19641649	G	-	DEL	ALDH3A1	ENST00000225740	human	ensembl	74_37	-1	known	frame_shift_del	c.1334	p.P445fs	0.889	superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602				156	0	0	40	39	49.3671
IFT20	0	genome.wustl.edu	37	17	26657489	26657491	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	26657489	26657491	CTT	-	DEL	IFT20	ENST00000585089	human	ensembl	74_37	-1	known	in_frame_del	c.271_269	p.E90in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	IFT20	HGNC	ENSG00000109083				174	0	0	50	19	27.5362
KIAA0100	0	genome.wustl.edu	37	17	26943932	26943932	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	26943932	26943932	C	-	DEL	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	frame_shift_del	c.5996	p.G1999fs	1.000	pfam_FMP27_C	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				81	0	0	27	12	30.7692
SLFN5	0	genome.wustl.edu	37	17	33592318	33592319	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	33592318	33592319	-	C	INS	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	frame_shift_ins	c.2087_2088	p.P699fs	0.823:0.820	superfamily_P-loop_NTPase	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750				199	0	0	95	27	22.1311
SYNRG	0	genome.wustl.edu	37	17	35896180	35896180	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	35896180	35896180	T	-	DEL	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	frame_shift_del	c.3567	p.A1190fs	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114				74	0	0	36	12	25
MED1	0	genome.wustl.edu	37	17	37564099	37564099	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	37564099	37564099	G	-	DEL	MED1	ENST00000300651	human	ensembl	74_37	-1	known	frame_shift_del	c.4375	p.Q1459fs	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				122	0	0	40	21	34.4262
PPP1R1B	0	genome.wustl.edu	37	17	37785805	37785805	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	37785805	37785805	C	-	DEL	PPP1R1B	ENST00000254079	human	ensembl	74_37	+1	known	frame_shift_del	c.155	p.H54fs	1.000	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1B	HGNC	ENSG00000131771				73	0	0	28	12	30
KCNH4	0	genome.wustl.edu	37	17	40315704	40315704	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	40315704	40315704	G	-	DEL	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	frame_shift_del	c.2397	p.R800fs	0.757	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558				63	0	0	13	4	23.5294
EFCAB13	0	genome.wustl.edu	37	17	45451978	45451978	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	45451978	45451978	A	-	DEL	EFCAB13	ENST00000331493	human	ensembl	74_37	+1	known	frame_shift_del	c.1018	p.S342fs	0.000	NULL	NULL	-	no_errors	EFCAB13	HGNC	ENSG00000178852				101	0	0	64	19	22.8916
ITGA3	0	genome.wustl.edu	37	17	48157649	48157650	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	48157649	48157650	-	TG	INS	ITGA3	ENST00000320031	human	ensembl	74_37	+1	known	frame_shift_ins	c.2730_2731	p.W912fs	0.961:1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884				53	0	0	33	6	15.3846
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				145	0	0	50	16	24.2424
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				343	0	0	79	24	23.301
RNF43	0	genome.wustl.edu	37	17	56448298	56448298	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	56448298	56448298	G	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.349	p.R117fs	1.000	superfamily_PAS	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				129	0	0	46	10	17.8571
DDX42	0	genome.wustl.edu	37	17	61886281	61886281	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	61886281	61886281	G	-	DEL	DDX42	ENST00000389924	human	ensembl	74_37	+1	known	frame_shift_del	c.1125	p.A377fs	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231				187	0	0	66	23	25.8427
CSH2	0	genome.wustl.edu	37	17	61950602	61950602	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	61950602	61950602	A	-	DEL	CSH2	ENST00000392886	human	ensembl	74_37	-1	known	frame_shift_del	c.108	p.F36fs	0.154	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSH2	HGNC	ENSG00000213218				427	0	0	170	23	11.9171
CEP95	0	genome.wustl.edu	37	17	62522231	62522231	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	62522231	62522231	C	-	DEL	CEP95	ENST00000556440	human	ensembl	74_37	+1	known	frame_shift_del	c.1065	p.Q357fs	0.007	NULL	superfamily_CH-domain	-	no_errors	CEP95	HGNC	ENSG00000258890				210	0	0	85	25	22.7273
AXIN2	0	genome.wustl.edu	37	17	63532585	63532585	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	63532585	63532585	C	-	DEL	AXIN2	ENST00000307078	human	ensembl	74_37	-1	known	frame_shift_del	c.1994	p.G665fs	0.436	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN2	HGNC	ENSG00000168646				80	0	0	31	15	32.6087
TMEM256-PLSCR3	0	genome.wustl.edu	37	17	7296968	7296968	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	7296968	7296968	G	-	DEL	TMEM256-PLSCR3	ENST00000324822	human	ensembl	74_37	-1	known	frame_shift_del	c.195	p.F66fs	0.860	pfam_Scramblase	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	TMEM256-PLSCR3	HGNC	ENSG00000187838				33	0	0	27	11	28.9474
FXR2	0	genome.wustl.edu	37	17	7517825	7517826	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	7517825	7517826	-	C	INS	FXR2	ENST00000250113	human	ensembl	74_37	-1	known	frame_shift_ins	c.26_25	p.D9fs	1.000:1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245				13	0	0	7	2	22.2222
EFNB3	0	genome.wustl.edu	37	17	7612702	7612702	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	17	7612702	7612702	G	-	DEL	EFNB3	ENST00000226091	human	ensembl	74_37	+1	known	frame_shift_del	c.831	p.G279fs	0.981	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947				78	0	0	8	19	70.3704
CABYR	0	genome.wustl.edu	37	18	21736534	21736534	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	21736534	21736534	A	-	DEL	CABYR	ENST00000463087	human	ensembl	74_37	+1	known	frame_shift_del	c.1069	p.K358fs	0.000	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040				168	0	0	99	33	25
ENSG00000252258	0	genome.wustl.edu	37	18	3025533	3025533	+	RNA	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	3025533	3025533	A	-	DEL	ENSG00000252258	ENST00000516449	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA70	RFAM	ENSG00000252258				35	0	0	14	13	48.1481
CCDC178	0	genome.wustl.edu	37	18	30847010	30847010	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	30847010	30847010	T	-	DEL	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	frame_shift_del	c.1279	p.T427fs	0.005	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				44	0	0	16	16	50
CCDC178	0	genome.wustl.edu	37	18	30873148	30873148	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	30873148	30873148	T	-	DEL	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	frame_shift_del	c.1151	p.N384fs	0.004	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				85	0	0	32	10	23.8095
ST8SIA5	0	genome.wustl.edu	37	18	44262012	44262012	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	44262012	44262012	G	-	DEL	ST8SIA5	ENST00000315087	human	ensembl	74_37	-1	known	frame_shift_del	c.585	p.I196fs	0.661	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA5	HGNC	ENSG00000101638				47	0	0	19	8	29.6296
SMAD4	0	genome.wustl.edu	37	18	48575133	48575133	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	48575133	48575133	A	-	DEL	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	frame_shift_del	c.327	p.K110fs	0.993	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				145	0	0	58	27	31.7647
SMAD4	0	genome.wustl.edu	37	18	48593495	48593496	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	48593495	48593496	AG	-	DEL	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	frame_shift_del	c.1246_1247	p.E417fs	1.000:1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				134	0	0	60	27	31.0345
DSEL	0	genome.wustl.edu	37	18	65181248	65181248	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	65181248	65181248	T	-	DEL	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	frame_shift_del	c.628	p.I210fs	1.000	superfamily_Chondroitin_lyas	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				102	0	0	60	13	17.8082
ANKRD12	0	genome.wustl.edu	37	18	9254818	9254819	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	18	9254818	9254819	-	G	INS	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	frame_shift_ins	c.1553_1554	p.N520fs	1.000:0.969	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				113	0	0	49	18	26.8657
TYK2	0	genome.wustl.edu	37	19	10472526	10472526	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	10472526	10472526	G	-	DEL	TYK2	ENST00000264818	human	ensembl	74_37	-1	known	frame_shift_del	c.1879	p.L627fs	0.001	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397				276	0	0	96	22	18.6441
ILF3	0	genome.wustl.edu	37	19	10792683	10792683	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	10792683	10792683	C	-	DEL	ILF3	ENST00000449870	human	ensembl	74_37	+1	known	frame_shift_del	c.1195	p.Q401fs	1.000	pfscan_dsRNA-bd_dom	pfam_DZF,pfam_dsRNA-bd_dom,smart_DZF,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	ILF3	HGNC	ENSG00000129351				70	0	0	40	8	16.6667
CCDC151	0	genome.wustl.edu	37	19	11533253	11533255	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	11533253	11533255	CTT	-	DEL	CCDC151	ENST00000356392	human	ensembl	74_37	-1	known	in_frame_del	c.1320_1318	p.K440in_frame_del	0.001:0.000:0.000	NULL	NULL	-	no_errors	CCDC151	HGNC	ENSG00000198003				24	0	0	3	6	66.6667
GCDH	0	genome.wustl.edu	37	19	13008601	13008601	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	13008601	13008601	G	-	DEL	GCDH	ENST00000222214	human	ensembl	74_37	+1	known	frame_shift_del	c.1167	p.N392fs	0.996	pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	GCDH	HGNC	ENSG00000105607				209	0	0	68	22	24.4444
LRRC25	0	genome.wustl.edu	37	19	18507766	18507766	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	18507766	18507766	C	-	DEL	LRRC25	ENST00000339007	human	ensembl	74_37	-1	known	frame_shift_del	c.8	p.G3fs	0.003	NULL	NULL	-	no_errors	LRRC25	HGNC	ENSG00000175489				50	0	0	18	13	41.9355
FKBP8	0	genome.wustl.edu	37	19	18644139	18644139	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	18644139	18644139	C	-	DEL	FKBP8	ENST00000453489	human	ensembl	74_37	-1	known	frame_shift_del	c.1048	p.E350fs	0.998	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_PPIase_FKBP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701				30	0	0	4	3	42.8571
NDUFA13	0	genome.wustl.edu	37	19	19638852	19638852	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	19638852	19638852	C	-	DEL	NDUFA13	ENST00000252576	human	ensembl	74_37	+1	known	frame_shift_del	c.601	p.L203fs	0.026	pfam_GRIM-19	pfam_GRIM-19	-	no_errors	NDUFA13	HGNC	ENSG00000186010				48	0	0	12	7	36.8421
LOC440518	0	genome.wustl.edu	37	19	22780133	22780134	+	RNA	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	22780133	22780134	-	A	INS	LOC440518	ENST00000597408	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018:0.058	-	-	-	no_errors	CTC-457E21.3	Clone_based_vega_gene	ENSG00000269332				141	0	0	46	19	29.2308
ZNF726	0	genome.wustl.edu	37	19	24118188	24118188	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	24118188	24118188	A	-	DEL	ZNF726	ENST00000322487	human	ensembl	74_37	+1	known	frame_shift_del	c.2129	p.I712fs	0.007	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF726	HGNC	ENSG00000213967				69	0	0	17	5	22.7273
SLC39A3	0	genome.wustl.edu	37	19	2737116	2737117	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	2737116	2737117	-	AG	INS	SLC39A3	ENST00000269740	human	ensembl	74_37	-1	known	frame_shift_ins	c.140_139	p.C47fs	1.000:1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A3	HGNC	ENSG00000141873				89	0	0	31	8	20.5128
LRFN3	0	genome.wustl.edu	37	19	36431520	36431521	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	36431520	36431521	-	C	INS	LRFN3	ENST00000246529	human	ensembl	74_37	+1	known	frame_shift_ins	c.1193_1194	p.R401fs	1.000:0.999	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN3	HGNC	ENSG00000126243				191	0	0	53	18	25.3521
ZNF790	0	genome.wustl.edu	37	19	37310974	37310974	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	37310974	37310974	T	-	DEL	ZNF790	ENST00000356725	human	ensembl	74_37	-1	known	frame_shift_del	c.272	p.N91fs	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863				93	0	0	57	17	22.973
DYRK1B	0	genome.wustl.edu	37	19	40320999	40320999	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	40320999	40320999	G	-	DEL	DYRK1B	ENST00000601972	human	ensembl	74_37	-1	putative	frame_shift_del	c.388	p.H130fs	0.002	NULL	superfamily_Kinase-like_dom	-	no_errors	DYRK1B	HGNC	ENSG00000105204				116	0	0	25	8	24.2424
EGLN2	0	genome.wustl.edu	37	19	41306665	41306665	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	41306665	41306665	C	-	DEL	EGLN2	ENST00000303961	human	ensembl	74_37	+1	known	frame_shift_del	c.188	p.R65fs	0.750	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	EGLN2	HGNC	ENSG00000269858				51	0	0	18	7	28
CYP2B6	0	genome.wustl.edu	37	19	41522669	41522670	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	41522669	41522670	-	C	INS	CYP2B6	ENST00000324071	human	ensembl	74_37	+1	known	frame_shift_ins	c.1413_1414	p.Q472fs	0.289:0.974	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2A-like	-	no_errors	CYP2B6	HGNC	ENSG00000197408				72	0	0	27	8	22.8571
ERF	0	genome.wustl.edu	37	19	42753368	42753368	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	42753368	42753368	C	-	DEL	ERF	ENST00000222329	human	ensembl	74_37	-1	known	frame_shift_del	c.896	p.G299fs	0.941	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERF	HGNC	ENSG00000105722				43	0	0	13	16	55.1724
ZNF235	0	genome.wustl.edu	37	19	44792637	44792637	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	44792637	44792637	T	-	DEL	ZNF235	ENST00000291182	human	ensembl	74_37	-1	known	frame_shift_del	c.951	p.K317fs	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917				157	0	0	84	21	20
SAE1	0	genome.wustl.edu	37	19	47712448	47712450	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	47712448	47712450	CTT	-	DEL	SAE1	ENST00000270225	human	ensembl	74_37	+1	known	in_frame_del	c.981_983	p.F331in_frame_del	1.000:1.000:1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like	-	no_errors	SAE1	HGNC	ENSG00000142230				155	0	0	82	17	17.1717
ZNF114	0	genome.wustl.edu	37	19	48789818	48789818	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	48789818	48789818	T	-	DEL	ZNF114	ENST00000315849	human	ensembl	74_37	+1	known	frame_shift_del	c.937	p.Y315fs	0.070	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150				146	0	0	66	12	15.3846
ALDH16A1	0	genome.wustl.edu	37	19	49969002	49969002	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	49969002	49969002	C	-	DEL	ALDH16A1	ENST00000293350	human	ensembl	74_37	+1	known	frame_shift_del	c.1576	p.Y528fs	0.444	superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	-	no_errors	ALDH16A1	HGNC	ENSG00000161618				216	0	0	74	15	16.8539
SCAF1	0	genome.wustl.edu	37	19	50158042	50158043	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	50158042	50158043	CC	-	DEL	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	frame_shift_del	c.3533_3534	p.P1180fs	0.934:0.919	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				96	0	0	31	14	31.1111
ATF5	0	genome.wustl.edu	37	19	50434211	50434211	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	50434211	50434211	C	-	DEL	ATF5	ENST00000423777	human	ensembl	74_37	+1	known	frame_shift_del	c.104	p.L37fs	1.000	NULL	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	ATF5	HGNC	ENSG00000169136				25	0	0	4	4	50
NAPSA	0	genome.wustl.edu	37	19	50862306	50862306	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	50862306	50862306	C	-	DEL	NAPSA	ENST00000253719	human	ensembl	74_37	-1	known	frame_shift_del	c.997	p.V333fs	0.394	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	NAPSA	HGNC	ENSG00000131400				146	0	0	50	12	19.3548
NLRP9	0	genome.wustl.edu	37	19	56244545	56244545	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	56244545	56244545	A	-	DEL	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	frame_shift_del	c.652	p.S218fs	0.003	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				46	0	0	26	8	23.5294
ZNF460	0	genome.wustl.edu	37	19	57802746	57802746	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	57802746	57802746	T	-	DEL	ZNF460	ENST00000360338	human	ensembl	74_37	+1	known	frame_shift_del	c.837	p.F280fs	0.050	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714				189	0	0	78	30	27.7778
SLC25A41	0	genome.wustl.edu	37	19	6433605	6433605	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	19	6433605	6433605	G	-	DEL	SLC25A41	ENST00000321510	human	ensembl	74_37	-1	known	frame_shift_del	c.100	p.Q34fs	0.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A41	HGNC	ENSG00000181240				126	0	0	34	14	29.1667
POTEJ	0	genome.wustl.edu	37	2	131414272	131414272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	131414272	131414272	A	-	DEL	POTEJ	ENST00000409602	human	ensembl	74_37	+1	novel	frame_shift_del	c.1939	p.K649fs	0.001	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEJ	HGNC	ENSG00000222038				134	0	0	79	7	8.13953
KIF5C	0	genome.wustl.edu	37	2	149861972	149861973	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	149861972	149861973	-	A	INS	KIF5C	ENST00000435030	human	ensembl	74_37	+1	known	frame_shift_ins	c.2439_2440	p.S815fs	0.993:1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280				51	0	0	18	6	25
METTL8	0	genome.wustl.edu	37	2	172195839	172195839	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	172195839	172195839	T	-	DEL	METTL8	ENST00000392604	human	ensembl	74_37	-1	known	frame_shift_del	c.461	p.N154fs	0.000	NULL	pfam_Methyltransf_11	-	no_errors	METTL8	HGNC	ENSG00000123600				235	0	0	126	49	28
RAD51AP2	0	genome.wustl.edu	37	2	17699325	17699326	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	17699325	17699326	-	G	INS	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	frame_shift_ins	c.358_357	p.S119fs	0.003:0.002	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				121	0	0	51	17	25
SMC6	0	genome.wustl.edu	37	2	17898126	17898126	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	17898126	17898126	T	-	DEL	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	frame_shift_del	c.1306	p.I436fs	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				67	0	0	35	15	30
RBM45	0	genome.wustl.edu	37	2	178986024	178986024	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	178986024	178986024	T	-	DEL	RBM45	ENST00000286070	human	ensembl	74_37	+1	known	frame_shift_del	c.791	p.F265fs	1.000	smart_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM45	HGNC	ENSG00000155636				96	0	0	29	7	19.4444
CALCRL	0	genome.wustl.edu	37	2	188217045	188217046	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	188217045	188217046	-	A	INS	CALCRL	ENST00000392370	human	ensembl	74_37	-1	known	frame_shift_ins	c.924_923	p.L310fs	1.000:1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_CGRP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCRL	HGNC	ENSG00000064989				41	0	0	24	7	22.5806
TMEFF2	0	genome.wustl.edu	37	2	192863895	192863896	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	192863895	192863896	-	T	INS	TMEFF2	ENST00000272771	human	ensembl	74_37	-1	known	frame_shift_ins	c.576_575	p.N192fs	1.000:1.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom,pfscan_EG-like_dom	-	no_errors	TMEFF2	HGNC	ENSG00000144339				126	0	0	80	38	32.2034
SLC39A10	0	genome.wustl.edu	37	2	196544941	196544942	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	196544941	196544942	-	A	INS	SLC39A10	ENST00000359634	human	ensembl	74_37	+1	known	frame_shift_ins	c.175_176	p.Y62fs	1.000:1.000	NULL	pfam_ZIP	-	no_errors	SLC39A10	HGNC	ENSG00000196950				78	0	0	46	21	31.3433
DNAH7	0	genome.wustl.edu	37	2	196834715	196834715	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	196834715	196834715	T	-	DEL	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_del	c.2162	p.K721fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				105	0	0	57	19	25
DNAH7	0	genome.wustl.edu	37	2	196866535	196866535	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	196866535	196866535	T	-	DEL	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_del	c.1037	p.K346fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				99	0	0	38	11	22.449
HSPD1	0	genome.wustl.edu	37	2	198353864	198353864	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	198353864	198353864	T	-	DEL	HSPD1	ENST00000345042	human	ensembl	74_37	-1	known	frame_shift_del	c.1077	p.G360fs	1.000	pfam_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,superfamily_Cpn60/TCP-1,tigrfam_Chaprnin_Cpn60	pfam_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381				122	0	0	74	30	28.8462
BARD1	0	genome.wustl.edu	37	2	215646085	215646085	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	215646085	215646085	T	-	DEL	BARD1	ENST00000260947	human	ensembl	74_37	-1	known	frame_shift_del	c.513	p.D172fs	0.000	NULL	pfam_Ankyrin_rpt,pfam_BRCT_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_Ankyrin_rpt,smart_BRCT_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BRCT_dom,pfscan_Znf_RING,prints_Ankyrin_rpt	-	no_errors	BARD1	HGNC	ENSG00000138376				166	0	0	78	27	25.7143
ABCA12	0	genome.wustl.edu	37	2	215818621	215818621	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	215818621	215818621	A	-	DEL	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	frame_shift_del	c.6604	p.S2202fs	0.003	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				69	0	0	31	14	31.1111
SLC4A3	0	genome.wustl.edu	37	2	220502335	220502335	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	220502335	220502335	C	-	DEL	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	frame_shift_del	c.2649	p.P885fs	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				97	0	0	39	15	27.7778
HDAC4	0	genome.wustl.edu	37	2	240002823	240002823	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	240002823	240002823	G	-	DEL	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	frame_shift_del	c.2703	p.M902fs	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024				78	0	0	9	3	25
DNMT3A	0	genome.wustl.edu	37	2	25523009	25523009	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	25523009	25523009	G	-	DEL	DNMT3A	ENST00000264709	human	ensembl	74_37	-1	known	frame_shift_del	c.176	p.P59fs	0.778	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3A	HGNC	ENSG00000119772				53	0	0	14	17	54.8387
CRIM1	0	genome.wustl.edu	37	2	36749409	36749409	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	36749409	36749409	G	-	DEL	CRIM1	ENST00000280527	human	ensembl	74_37	+1	known	frame_shift_del	c.2381	p.C794fs	1.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938				280	0	0	120	35	22.5806
ZFP36L2	0	genome.wustl.edu	37	2	43452512	43452512	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	43452512	43452512	C	-	DEL	ZFP36L2	ENST00000282388	human	ensembl	74_37	-1	known	frame_shift_del	c.431	p.G144fs	0.783	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518				39	0	0	20	11	35.4839
ERLEC1	0	genome.wustl.edu	37	2	54042070	54042070	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	54042070	54042070	G	-	DEL	ERLEC1	ENST00000185150	human	ensembl	74_37	+1	known	frame_shift_del	c.1378	p.V461fs	1.000	superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	ERLEC1	HGNC	ENSG00000068912				99	0	0	58	11	15.942
C2orf42	0	genome.wustl.edu	37	2	70392682	70392682	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	70392682	70392682	T	-	DEL	C2orf42	ENST00000264434	human	ensembl	74_37	-1	known	frame_shift_del	c.1230	p.K410fs	1.000	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998				160	0	0	66	20	23.2558
C2orf42	0	genome.wustl.edu	37	2	70402837	70402837	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	70402837	70402837	T	-	DEL	C2orf42	ENST00000264434	human	ensembl	74_37	-1	known	frame_shift_del	c.1007	p.K336fs	1.000	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998				461	0	0	226	77	25.4125
FAHD2CP	0	genome.wustl.edu	37	2	96680936	96680937	+	RNA	DEL	GT	GT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	2	96680936	96680937	GT	-	DEL	FAHD2CP	ENST00000607780	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	FAHD2CP	HGNC	ENSG00000231584				101	0	0	46	15	24.5902
DZANK1	0	genome.wustl.edu	37	20	18396042	18396043	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	18396042	18396043	-	C	INS	DZANK1	ENST00000262547	human	ensembl	74_37	-1	known	frame_shift_ins	c.1006_1005	p.T335fs	0.003:0.001	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DZANK1	HGNC	ENSG00000089091				90	0	0	25	11	30.5556
RALGAPA2	0	genome.wustl.edu	37	20	20616123	20616123	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	20616123	20616123	T	-	DEL	RALGAPA2	ENST00000202677	human	ensembl	74_37	-1	known	frame_shift_del	c.944	p.K315fs	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA2	HGNC	ENSG00000188559				246	0	0	116	35	23.1788
RALGAPA2	0	genome.wustl.edu	37	20	20620462	20620462	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	20620462	20620462	A	-	DEL	RALGAPA2	ENST00000202677	human	ensembl	74_37	-1	known	frame_shift_del	c.633	p.L212fs	0.999	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA2	HGNC	ENSG00000188559				276	0	0	101	30	22.9008
CD93	0	genome.wustl.edu	37	20	23066469	23066469	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	23066469	23066469	C	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	frame_shift_del	c.361	p.E121fs	0.689	pirsf_CD93/CD141,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				25	0	0	5	5	50
LZTS3	0	genome.wustl.edu	37	20	3145148	3145150	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	3145148	3145150	CTT	-	DEL	LZTS3	ENST00000329152	human	ensembl	74_37	-1	known	in_frame_del	c.1974_1972	p.K658in_frame_del	0.948:1.000:1.000	NULL	NULL	-	no_errors	LZTS3	Uniprot_gn	ENSG00000088899				130	0	0	46	24	34.2857
PTPRT	0	genome.wustl.edu	37	20	40739003	40739003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	40739003	40739003	G	-	DEL	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	frame_shift_del	c.3281	p.P1094fs	0.991	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				93	0	0	42	13	23.6364
PCK1	0	genome.wustl.edu	37	20	56136615	56136617	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	56136615	56136617	GAG	-	DEL	PCK1	ENST00000319441	human	ensembl	74_37	+1	known	in_frame_del	c.148_150	p.E52in_frame_del	1.000:1.000:1.000	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK1	HGNC	ENSG00000124253				278	0	0	72	20	21.7391
COL20A1	0	genome.wustl.edu	37	20	61939422	61939423	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	61939422	61939423	-	G	INS	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	frame_shift_ins	c.755_756	p.N255fs	1.000:0.998	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				94	0	0	39	10	20.4082
HELZ2	0	genome.wustl.edu	37	20	62193251	62193251	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	62193251	62193251	G	-	DEL	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	frame_shift_del	c.6616	p.R2206fs	0.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				15	0	0	5	4	44.4444
TMX4	0	genome.wustl.edu	37	20	7967944	7967944	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	20	7967944	7967944	A	-	DEL	TMX4	ENST00000246024	human	ensembl	74_37	-1	known	frame_shift_del	c.606	p.F202fs	0.899	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX4	HGNC	ENSG00000125827				118	0	0	24	6	20
RIPK4	0	genome.wustl.edu	37	21	43166800	43166800	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	43166800	43166800	C	-	DEL	RIPK4	ENST00000352483	human	ensembl	74_37	-1	known	frame_shift_del	c.805	p.D269fs	0.320	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK4	HGNC	ENSG00000183421				76	0	0	17	10	37.037
POFUT2	0	genome.wustl.edu	37	21	46703387	46703387	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	46703387	46703387	C	-	DEL	POFUT2	ENST00000349485	human	ensembl	74_37	-1	known	frame_shift_del	c.438	p.W147fs	0.556	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866				534	0	0	146	29	16.5714
PRMT2	0	genome.wustl.edu	37	21	48080764	48080764	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	21	48080764	48080764	T	-	DEL	PRMT2	ENST00000355680	human	ensembl	74_37	+1	known	frame_shift_del	c.850	p.S286fs	1.000	pfam_Arg_MeTrfase	pfam_SH3_domain,pfam_Arg_MeTrfase,pfam_SH3_2,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_Trfase_Trm5/Tyw2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PRMT2	HGNC	ENSG00000160310				246	0	0	92	44	32.3529
PRAME	0	genome.wustl.edu	37	22	22890686	22890686	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	22	22890686	22890686	G	-	DEL	PRAME	ENST00000398741	human	ensembl	74_37	-1	known	frame_shift_del	c.1333	p.L445fs	0.014	NULL	NULL	-	no_errors	PRAME	HGNC	ENSG00000185686				143	0	0	64	13	16.8831
SENP7	0	genome.wustl.edu	37	3	101085558	101085558	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	101085558	101085558	T	-	DEL	SENP7	ENST00000394095	human	ensembl	74_37	-1	known	frame_shift_del	c.1034	p.N345fs	0.056	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468				100	0	0	66	20	23.2558
CD86	0	genome.wustl.edu	37	3	121838286	121838287	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	121838286	121838287	-	A	INS	CD86	ENST00000330540	human	ensembl	74_37	+1	known	frame_shift_ins	c.895_896	p.I301fs	0.361:0.028	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD86	HGNC	ENSG00000114013				95	0	0	89	16	15.2381
TRH	0	genome.wustl.edu	37	3	129695643	129695643	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	129695643	129695643	G	-	DEL	TRH	ENST00000302649	human	ensembl	74_37	+1	known	frame_shift_del	c.313	p.A107fs	0.490	pfam_TRH,pirsf_TRH	pfam_TRH,pirsf_TRH	-	no_errors	TRH	HGNC	ENSG00000170893				108	0	0	61	11	15.2778
ASTE1	0	genome.wustl.edu	37	3	130743303	130743303	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	130743303	130743303	T	-	DEL	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	frame_shift_del	c.848	p.K283fs	0.177	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533				153	0	0	101	33	24.6269
DZIP1L	0	genome.wustl.edu	37	3	137786534	137786534	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	137786534	137786534	G	-	DEL	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.P614fs	0.771	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163				93	0	0	24	6	20
ATR	0	genome.wustl.edu	37	3	142217557	142217557	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	142217557	142217557	T	-	DEL	ATR	ENST00000350721	human	ensembl	74_37	-1	known	frame_shift_del	c.5440	p.R1814fs	1.000	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				47	0	0	46	11	19.2982
CNTN6	0	genome.wustl.edu	37	3	1443201	1443201	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	1443201	1443201	A	-	DEL	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	frame_shift_del	c.2789	p.N931fs	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				91	0	0	27	8	22.8571
CLRN1	0	genome.wustl.edu	37	3	150690465	150690465	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	150690465	150690465	A	-	DEL	CLRN1	ENST00000328863	human	ensembl	74_37	-1	known	frame_shift_del	c.31	p.C11fs	1.000	NULL	NULL	-	no_errors	CLRN1	HGNC	ENSG00000163646				145	0	0	87	23	20.9091
SI	0	genome.wustl.edu	37	3	164735589	164735589	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	164735589	164735589	A	-	DEL	SI	ENST00000264382	human	ensembl	74_37	-1	known	frame_shift_del	c.3593	p.L1198fs	1.000	pfam_Glyco_hydro_31,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				92	0	0	68	16	19.0476
SERPINI2	0	genome.wustl.edu	37	3	167183441	167183441	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	167183441	167183441	A	-	DEL	SERPINI2	ENST00000264677	human	ensembl	74_37	-1	known	frame_shift_del	c.499	p.S167fs	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINI2	HGNC	ENSG00000114204				75	0	0	44	11	20
SEC62	0	genome.wustl.edu	37	3	169700664	169700664	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	169700664	169700664	A	-	DEL	SEC62	ENST00000337002	human	ensembl	74_37	+1	known	frame_shift_del	c.421	p.D144fs	1.000	pfam_Sec62,superfamily_ABC1_TM_dom	pfam_Sec62,superfamily_ABC1_TM_dom	-	no_errors	SEC62	HGNC	ENSG00000008952				46	0	0	37	8	17.7778
PRKCI	0	genome.wustl.edu	37	3	169998128	169998128	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	169998128	169998128	A	-	DEL	PRKCI	ENST00000295797	human	ensembl	74_37	+1	known	frame_shift_del	c.819	p.T276fs	0.995	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_PKC_zeta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCI	HGNC	ENSG00000163558				77	0	0	76	15	16.4835
TNIK	0	genome.wustl.edu	37	3	170797414	170797416	+	In_Frame_Del	DEL	TAG	TAG	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	TAG	TAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	170797414	170797416	TAG	-	DEL	TNIK	ENST00000436636	human	ensembl	74_37	-1	known	in_frame_del	c.3341_3339	p.Y1114in_frame_del	1.000:1.000:1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	TNIK	HGNC	ENSG00000154310				30	0	0	31	6	16.2162
PLD1	0	genome.wustl.edu	37	3	171451263	171451263	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	171451263	171451263	T	-	DEL	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	frame_shift_del	c.577	p.M193fs	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pirsf_PLipase_D_euk,pfscan_Phox	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651				78	0	0	45	8	15.0943
ATP11B	0	genome.wustl.edu	37	3	182602674	182602674	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	182602674	182602674	T	-	DEL	ATP11B	ENST00000323116	human	ensembl	74_37	+1	known	frame_shift_del	c.2643	p.Y884fs	1.000	tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11B	HGNC	ENSG00000058063				126	0	0	58	16	21.6216
KCNH8	0	genome.wustl.edu	37	3	19384076	19384079	+	Frame_Shift_Del	DEL	CAGA	CAGA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CAGA	CAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	19384076	19384079	CAGA	-	DEL	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	frame_shift_del	c.446_443	p.E149fs	0.117:0.982:1.000:1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				85	0	0	39	17	30.3571
PCYT1A	0	genome.wustl.edu	37	3	195969488	195969490	+	In_Frame_Del	DEL	ATC	ATC	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	195969488	195969490	ATC	-	DEL	PCYT1A	ENST00000292823	human	ensembl	74_37	-1	known	in_frame_del	c.510_508	p.D170in_frame_del	0.936:1.000:1.000	pfam_Cyt_trans-like	pfam_Cyt_trans-like,superfamily_NA-bd_OB-fold,tigrfam_Cyt_trans-like	-	no_errors	PCYT1A	HGNC	ENSG00000161217				128	0	0	74	12	13.9535
SGOL1	0	genome.wustl.edu	37	3	20212216	20212216	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	20212216	20212216	T	-	DEL	SGOL1	ENST00000263753	human	ensembl	74_37	-1	known	frame_shift_del	c.1564	p.R522fs	0.037	NULL	pfam_Shugoshin_N,pfam_Shugoshin_C	-	no_errors	SGOL1	HGNC	ENSG00000129810				34	0	0	34	16	32
GOLGA4	0	genome.wustl.edu	37	3	37367468	37367468	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	37367468	37367468	A	-	DEL	GOLGA4	ENST00000361924	human	ensembl	74_37	+1	known	frame_shift_del	c.4091	p.V1367fs	0.993	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674				52	0	0	33	7	17.5
EXOG	0	genome.wustl.edu	37	3	38565660	38565662	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	38565660	38565662	AGG	-	DEL	EXOG	ENST00000287675	human	ensembl	74_37	+1	known	in_frame_del	c.914_916	p.E306in_frame_del	0.930:0.936:1.000	NULL	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	-	no_errors	EXOG	HGNC	ENSG00000157036				241	0	0	149	54	26.601
DOCK3	0	genome.wustl.edu	37	3	51417604	51417605	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	51417604	51417605	CC	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549_5550	p.P1852fs	0.115:0.081	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				105	0	0	25	7	21.875
DNAH12	0	genome.wustl.edu	37	3	57509313	57509313	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	57509313	57509313	T	-	DEL	DNAH12	ENST00000351747	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.G93fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844				38	0	0	32	10	23.8095
FEZF2	0	genome.wustl.edu	37	3	62357717	62357717	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	62357717	62357717	T	-	DEL	FEZF2	ENST00000283268	human	ensembl	74_37	-1	known	frame_shift_del	c.827	p.N276fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266				33	0	0	6	5	45.4545
ARL13B	0	genome.wustl.edu	37	3	93761883	93761883	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	3	93761883	93761883	A	-	DEL	ARL13B	ENST00000394222	human	ensembl	74_37	+1	known	frame_shift_del	c.823	p.N277fs	1.000	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL13B	HGNC	ENSG00000169379				43	0	0	39	8	17.0213
CLGN	0	genome.wustl.edu	37	4	141313501	141313502	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	141313501	141313502	-	T	INS	CLGN	ENST00000325617	human	ensembl	74_37	-1	known	frame_shift_ins	c.1523_1522	p.T508fs	0.000:0.000	NULL	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132				150	0	0	34	21	38.1818
HAND2	0	genome.wustl.edu	37	4	174450194	174450194	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	174450194	174450194	C	-	DEL	HAND2	ENST00000359562	human	ensembl	74_37	-1	known	frame_shift_del	c.247	p.V83fs	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	HAND2	HGNC	ENSG00000164107				26	0	0	3	4	57.1429
WWC2	0	genome.wustl.edu	37	4	184166576	184166576	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	184166576	184166576	A	-	DEL	WWC2	ENST00000448232	human	ensembl	74_37	+1	known	frame_shift_del	c.610	p.M206fs	1.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC2	HGNC	ENSG00000151718				24	0	0	5	3	37.5
CYP4V2	0	genome.wustl.edu	37	4	187118245	187118245	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	187118245	187118245	T	-	DEL	CYP4V2	ENST00000378802	human	ensembl	74_37	+1	known	frame_shift_del	c.565	p.Y191fs	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4V2	HGNC	ENSG00000145476				140	0	0	46	30	39.4737
GRK4	0	genome.wustl.edu	37	4	2986250	2986251	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	2986250	2986251	-	A	INS	GRK4	ENST00000398052	human	ensembl	74_37	+1	known	frame_shift_ins	c.63_64	p.S23fs	0.978:0.983	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK4	HGNC	ENSG00000125388				134	0	0	48	11	18.6441
RGS12	0	genome.wustl.edu	37	4	3430399	3430400	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	3430399	3430400	AA	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.3526_3527	p.K1178fs	1.000:1.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				147	0	0	48	20	29.4118
AASDH	0	genome.wustl.edu	37	4	57220269	57220270	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	57220269	57220270	AA	-	DEL	AASDH	ENST00000205214	human	ensembl	74_37	-1	known	frame_shift_del	c.1319_1318	p.L440fs	1.000:0.990	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426				92	0	0	35	16	31.3725
JAKMIP1	0	genome.wustl.edu	37	4	6066711	6066712	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	6066711	6066712	-	A	INS	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	frame_shift_ins	c.1327_1326	p.G442fs	1.000:1.000	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				170	0	0	71	25	26.0417
SMR3A	0	genome.wustl.edu	37	4	71232432	71232432	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	4	71232432	71232432	T	-	DEL	SMR3A	ENST00000226460	human	ensembl	74_37	+1	known	frame_shift_del	c.126	p.P44fs	0.000	NULL	NULL	-	no_errors	SMR3A	HGNC	ENSG00000109208				197	0	0	40	24	37.5
PGGT1B	0	genome.wustl.edu	37	5	114572215	114572215	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	114572215	114572215	A	-	DEL	PGGT1B	ENST00000419445	human	ensembl	74_37	-1	known	frame_shift_del	c.484	p.C162fs	1.000	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	PGGT1B	HGNC	ENSG00000164219				102	0	0	34	23	40.3509
DMXL1	0	genome.wustl.edu	37	5	118465026	118465026	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	118465026	118465026	T	-	DEL	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	frame_shift_del	c.1223	p.L410fs	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				89	0	0	44	13	22.807
H2AFY	0	genome.wustl.edu	37	5	134724757	134724759	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	134724757	134724759	CTT	-	DEL	H2AFY	ENST00000511689	human	ensembl	74_37	-1	known	in_frame_del	c.27_25	p.K9in_frame_del	1.000:1.000:1.000	smart_Histone_H2A,pirsf_Core_histone_macro-H2A	pfam_Macro_dom,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_Macro_dom,pirsf_Core_histone_macro-H2A,prints_Histone_H2A,pfscan_Macro_dom	-	no_errors	H2AFY	HGNC	ENSG00000113648				139	0	0	36	18	33.3333
KDM3B	0	genome.wustl.edu	37	5	137756625	137756625	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	137756625	137756625	C	-	DEL	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	frame_shift_del	c.3946	p.P1317fs	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				185	0	0	67	23	25.5556
PCDH1	0	genome.wustl.edu	37	5	141244531	141244533	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	141244531	141244533	CTT	-	DEL	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	in_frame_del	c.1365_1363	p.K455in_frame_del	1.000:1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453				280	0	0	160	51	24.1706
FAT2	0	genome.wustl.edu	37	5	150907597	150907597	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	150907597	150907597	T	-	DEL	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	frame_shift_del	c.10124	p.K3375fs	0.028	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				194	0	0	92	26	22.0339
CNOT8	0	genome.wustl.edu	37	5	154254953	154254955	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	154254953	154254955	AGG	-	DEL	CNOT8	ENST00000285896	human	ensembl	74_37	+1	known	in_frame_del	c.833_835	p.E279in_frame_del	1.000:1.000:1.000	NULL	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	CNOT8	HGNC	ENSG00000155508				79	0	0	28	11	28.2051
MROH2B	0	genome.wustl.edu	37	5	41004528	41004528	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	41004528	41004528	T	-	DEL	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	frame_shift_del	c.4114	p.I1372fs	0.954	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495				205	2	0.966184	92	43	31.8519
HCN1	0	genome.wustl.edu	37	5	45303784	45303785	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	45303784	45303785	-	T	INS	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	frame_shift_ins	c.1535_1534	p.M512fs	1.000:1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				162	0	0	82	35	29.9145
MOCS2	0	genome.wustl.edu	37	5	52402940	52402940	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	52402940	52402940	G	-	DEL	MOCS2	ENST00000396954	human	ensembl	74_37	-1	known	frame_shift_del	c.65	p.P22fs	1.000	NULL	pfam_Mopterin_biosynth_MoaE,superfamily_Mopterin_biosynth_MoaE	-	no_errors	MOCS2	HGNC	ENSG00000164172				132	0	0	63	11	14.8649
TPPP	0	genome.wustl.edu	37	5	678052	678052	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	678052	678052	C	-	DEL	TPPP	ENST00000360578	human	ensembl	74_37	-1	known	frame_shift_del	c.124	p.A42fs	0.641	NULL	pfam_P25-alpha	-	no_errors	TPPP	HGNC	ENSG00000171368				33	0	0	21	7	25
PMCHL2	0	genome.wustl.edu	37	5	70671642	70671643	+	RNA	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	70671642	70671643	-	A	INS	PMCHL2	ENST00000415808	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.540:0.548	-	-	-	no_errors	PMCHL2	HGNC	ENSG00000169040				11	0	0	8	4	33.3333
ZCCHC9	0	genome.wustl.edu	37	5	80608440	80608441	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	80608440	80608441	-	A	INS	ZCCHC9	ENST00000254037	human	ensembl	74_37	+1	known	frame_shift_ins	c.775_776	p.P261fs	0.990:0.995	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC9	HGNC	ENSG00000131732				144	0	0	59	25	29.7619
ANKRD32	0	genome.wustl.edu	37	5	94030769	94030769	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	5	94030769	94030769	A	-	DEL	ANKRD32	ENST00000265140	human	ensembl	74_37	+1	known	frame_shift_del	c.2929	p.I977fs	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD32	HGNC	ENSG00000133302				71	0	0	56	12	17.6471
PAK1IP1	0	genome.wustl.edu	37	6	10705022	10705022	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	10705022	10705022	T	-	DEL	PAK1IP1	ENST00000379568	human	ensembl	74_37	+1	known	frame_shift_del	c.685	p.F230fs	0.951	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAK1IP1	HGNC	ENSG00000111845				180	0	0	71	26	26.8041
QRSL1	0	genome.wustl.edu	37	6	107088273	107088273	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	107088273	107088273	A	-	DEL	QRSL1	ENST00000369046	human	ensembl	74_37	+1	known	frame_shift_del	c.74	p.K26fs	1.000	pfam_Amidase,superfamily_Amidase_dom,tigrfam_GatA	pfam_Amidase,superfamily_Amidase_dom,tigrfam_GatA	-	no_errors	QRSL1	HGNC	ENSG00000130348				133	0	0	55	14	20.2899
TUBE1	0	genome.wustl.edu	37	6	112397206	112397206	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	112397206	112397206	T	-	DEL	TUBE1	ENST00000368662	human	ensembl	74_37	-1	known	frame_shift_del	c.746	p.K249fs	0.016	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935				260	0	0	105	42	28.5714
AKAP7	0	genome.wustl.edu	37	6	131481276	131481276	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	131481276	131481276	A	-	DEL	AKAP7	ENST00000368123	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.K57fs	0.449	pfam_Kinase-A_anchor_nucl_local_sig	pfam_Kinase-A_anchor_nucl_local_sig,pfam_Kinase-A_anchor_RI-RII-bd_dom,superfamily_RNA_ligase/cNuc_Pdiesterase	-	no_errors	AKAP7	HGNC	ENSG00000118507				100	0	0	41	19	31.6667
ARID1B	0	genome.wustl.edu	37	6	157405969	157405970	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	157405969	157405970	CT	-	DEL	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	frame_shift_del	c.2172_2173	p.P726fs	0.934:1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				178	0	0	58	12	17.1429
CDKAL1	0	genome.wustl.edu	37	6	21108632	21108632	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	21108632	21108632	A	-	DEL	CDKAL1	ENST00000274695	human	ensembl	74_37	+1	known	frame_shift_del	c.1237	p.K414fs	1.000	smart_Elp3/MiaB/NifB,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996				83	0	0	34	8	19.0476
GABBR1	0	genome.wustl.edu	37	6	29577144	29577144	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	29577144	29577144	G	-	DEL	GABBR1	ENST00000377034	human	ensembl	74_37	-1	known	frame_shift_del	c.1721	p.P574fs	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Peripla_BP_I,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681				102	0	0	50	14	21.875
PPP1R10	0	genome.wustl.edu	37	6	30570045	30570045	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	30570045	30570045	C	-	DEL	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	frame_shift_del	c.2381	p.G794fs	0.997	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				362	0	0	135	56	29.3194
PPP1R10	0	genome.wustl.edu	37	6	30570264	30570266	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	30570264	30570266	GGA	-	DEL	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	in_frame_del	c.2162_2160	p.P721in_frame_del	0.990:0.999:0.997	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				100	0	0	35	8	18.6047
DHX16	0	genome.wustl.edu	37	6	30621048	30621048	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	30621048	30621048	T	-	DEL	DHX16	ENST00000376442	human	ensembl	74_37	-1	known	frame_shift_del	c.3097	p.I1033fs	0.987	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560				143	0	0	71	23	24.4681
PRRC2A	0	genome.wustl.edu	37	6	31602641	31602641	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	31602641	31602641	C	-	DEL	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	frame_shift_del	c.5047	p.K1685fs	0.998	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				148	0	0	45	17	27.4194
NEU1	0	genome.wustl.edu	37	6	31829118	31829119	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	31829118	31829119	-	A	INS	NEU1	ENST00000375631	human	ensembl	74_37	-1	known	frame_shift_ins	c.462_461	p.Y155fs	1.000:0.993	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU1	HGNC	ENSG00000204386				124	0	0	35	12	25.5319
EHMT2	0	genome.wustl.edu	37	6	31852462	31852462	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	31852462	31852462	G	-	DEL	EHMT2	ENST00000395728	human	ensembl	74_37	-1	known	frame_shift_del	c.2734	p.L912fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371				82	0	0	19	13	40.625
SKIV2L	0	genome.wustl.edu	37	6	31937383	31937383	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	31937383	31937383	G	-	DEL	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	frame_shift_del	c.3632	p.A1213fs	1.000	pfam_DSH_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351				207	0	0	64	24	27.2727
NOTCH4	0	genome.wustl.edu	37	6	32188297	32188297	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	32188297	32188297	G	-	DEL	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	frame_shift_del	c.1044	p.G349fs	0.470	pirsf_Notch,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				277	0	0	100	11	9.90991
RPL10A	0	genome.wustl.edu	37	6	35438059	35438060	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	35438059	35438060	CA	-	DEL	RPL10A	ENST00000322203	human	ensembl	74_37	+1	known	frame_shift_del	c.414_415	p.H140fs	1.000:1.000	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like,pirsf_Ribosomal_L1	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like,pirsf_Ribosomal_L1	-	no_errors	RPL10A	HGNC	ENSG00000198755				86	0	0	35	11	23.913
STK38	0	genome.wustl.edu	37	6	36465583	36465583	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	36465583	36465583	A	-	DEL	STK38	ENST00000229812	human	ensembl	74_37	-1	known	frame_shift_del	c.1146	p.F382fs	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	STK38	HGNC	ENSG00000112079				155	0	0	47	31	39.7436
HSP90AB1	0	genome.wustl.edu	37	6	44219919	44219921	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	44219919	44219921	AGA	-	DEL	HSP90AB1	ENST00000353801	human	ensembl	74_37	+1	known	in_frame_del	c.1646_1648	p.K552in_frame_del	1.000:1.000:1.000	pfam_Hsp90_fam,pirsf_Hsp90_fam	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384				98	0	0	44	14	24.1379
CRISP1	0	genome.wustl.edu	37	6	49825088	49825088	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	49825088	49825088	A	-	DEL	CRISP1	ENST00000335847	human	ensembl	74_37	-1	known	frame_shift_del	c.26	p.L9fs	0.001	superfamily_CAP_domain	pfam_Cysteine_rich_secretory,pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	CRISP1	HGNC	ENSG00000124812				108	0	0	50	22	30.5556
DST	0	genome.wustl.edu	37	6	56716337	56716339	+	In_Frame_Del	DEL	ATC	ATC	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	56716337	56716339	ATC	-	DEL	DST	ENST00000370754	human	ensembl	74_37	-1	known	in_frame_del	c.483_481	p.D161in_frame_del	1.000:1.000:1.000	superfamily_CH-domain,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				45	0	0	27	7	20.5882
ZNF451	0	genome.wustl.edu	37	6	57015648	57015649	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	57015648	57015649	-	G	INS	ZNF451	ENST00000370706	human	ensembl	74_37	+1	known	frame_shift_ins	c.2740_2741	p.F916fs	1.000:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF451	HGNC	ENSG00000112200				257	0	0	117	48	29.0909
MMS22L	0	genome.wustl.edu	37	6	97626340	97626340	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	6	97626340	97626340	T	-	DEL	MMS22L	ENST00000275053	human	ensembl	74_37	-1	known	frame_shift_del	c.2658	p.A887fs	0.990	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MMS22L	HGNC	ENSG00000146263				208	0	0	98	34	25.7576
SRRT	0	genome.wustl.edu	37	7	100479331	100479332	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	100479331	100479332	-	G	INS	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	frame_shift_ins	c.303_304	p.G104fs	0.996:1.000	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087				77	0	0	42	10	19.2308
CADPS2	0	genome.wustl.edu	37	7	122194676	122194676	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	122194676	122194676	T	-	DEL	CADPS2	ENST00000449022	human	ensembl	74_37	-1	known	frame_shift_del	c.1403	p.N468fs	1.000	superfamily_C2_dom	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803				57	0	0	20	15	42.8571
UBN2	0	genome.wustl.edu	37	7	138978021	138978022	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	138978021	138978022	CT	-	DEL	UBN2	ENST00000473989	human	ensembl	74_37	+1	known	frame_shift_del	c.3713_3714	p.L1239fs	1.000:1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741				196	0	0	62	28	31.1111
ZNF775	0	genome.wustl.edu	37	7	150093851	150093851	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	150093851	150093851	C	-	DEL	ZNF775	ENST00000329630	human	ensembl	74_37	+1	known	frame_shift_del	c.282	p.L96fs	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF775	HGNC	ENSG00000196456				19	0	0	5	2	28.5714
SP8	0	genome.wustl.edu	37	7	20824665	20824665	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	20824665	20824665	C	-	DEL	SP8	ENST00000418710	human	ensembl	74_37	-1	known	frame_shift_del	c.771	p.L258fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Antifreeze_1	-	no_errors	SP8	HGNC	ENSG00000164651				44	0	0	9	9	50
CHN2	0	genome.wustl.edu	37	7	29546850	29546850	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	29546850	29546850	A	-	DEL	CHN2	ENST00000539406	human	ensembl	74_37	+1	known	frame_shift_del	c.1223	p.K409fs	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN2	HGNC	ENSG00000106069				90	0	0	63	13	17.1053
ADCYAP1R1	0	genome.wustl.edu	37	7	31126566	31126567	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	31126566	31126567	-	TG	INS	ADCYAP1R1	ENST00000304166	human	ensembl	74_37	+1	known	frame_shift_ins	c.833_834	p.V282fs	0.930:0.640	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549				351	0	0	124	21	14.4828
CCT6P1	0	genome.wustl.edu	37	7	65220825	65220825	+	RNA	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	65220825	65220825	T	-	DEL	CCT6P1	ENST00000442266	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	CCT6P1	HGNC	ENSG00000228409				54	0	0	39	16	29.0909
CLDN4	0	genome.wustl.edu	37	7	73246063	73246063	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	73246063	73246063	G	-	DEL	CLDN4	ENST00000340958	human	ensembl	74_37	+1	known	frame_shift_del	c.532	p.L180fs	0.998	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin4	-	no_errors	CLDN4	HGNC	ENSG00000189143				107	0	0	40	15	27.2727
PCLO	0	genome.wustl.edu	37	7	82585203	82585204	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	82585203	82585204	-	T	INS	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	frame_shift_ins	c.5066_5065	p.T1689fs	0.587:0.577	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				71	0	0	59	13	18.0556
ABCB1	0	genome.wustl.edu	37	7	87195486	87195486	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	87195486	87195486	A	-	DEL	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	frame_shift_del	c.602	p.F201fs	0.907	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				172	0	0	64	22	25.5814
TFPI2	0	genome.wustl.edu	37	7	93519517	93519517	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	93519517	93519517	C	-	DEL	TFPI2	ENST00000222543	human	ensembl	74_37	-1	known	frame_shift_del	c.203	p.G68fs	1.000	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825				102	1	0.970874	41	12	22.6415
CASD1	0	genome.wustl.edu	37	7	94174999	94174999	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	94174999	94174999	A	-	DEL	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	frame_shift_del	c.1619	p.A543fs	1.000	pfam_Cas1_AcylTrans_dom	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995				47	0	0	32	11	25.5814
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99017597	99017597	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	7	99017597	99017597	C	-	DEL	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	frame_shift_del	c.2243	p.G748fs	0.005	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919				298	0	0	101	21	17.2131
FER1L6	0	genome.wustl.edu	37	8	125072848	125072848	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	125072848	125072848	T	-	DEL	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	frame_shift_del	c.3045	p.Q1016fs	0.041	superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				115	0	0	34	18	34.6154
PHF20L1	0	genome.wustl.edu	37	8	133790151	133790151	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	133790151	133790151	A	-	DEL	PHF20L1	ENST00000486199	human	ensembl	74_37	+1	known	frame_shift_del	c.77	p.K27fs	1.000	smart_Tudor,smart_Tudor-like_plant	pfam_DUF3776,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292				175	0	0	69	20	22.4719
PPP1R16A	0	genome.wustl.edu	37	8	145727027	145727027	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	145727027	145727027	C	-	DEL	PPP1R16A	ENST00000292539	human	ensembl	74_37	+1	known	frame_shift_del	c.1328	p.H445fs	0.000	pirsf_Pase-1_reg_su_16AB_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PPP1R16A	HGNC	ENSG00000160972				35	0	0	5	5	50
KAT6A	0	genome.wustl.edu	37	8	41834610	41834610	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	41834610	41834610	G	-	DEL	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	frame_shift_del	c.1279	p.R427fs	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				183	0	0	116	28	19.4444
RB1CC1	0	genome.wustl.edu	37	8	53569498	53569498	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	53569498	53569498	T	-	DEL	RB1CC1	ENST00000025008	human	ensembl	74_37	-1	known	frame_shift_del	c.2891	p.K964fs	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287				119	0	0	62	18	22.5
PREX2	0	genome.wustl.edu	37	8	68992721	68992721	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	68992721	68992721	T	-	DEL	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	frame_shift_del	c.1686	p.S565fs	0.015	smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				80	0	0	46	11	19.2982
ZFHX4	0	genome.wustl.edu	37	8	77766490	77766495	+	In_Frame_Del	DEL	CAGCCA	CAGCCA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	CAGCCA	CAGCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	77766490	77766495	CAGCCA	-	DEL	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	in_frame_del	c.7333_7338	p.PQ2448in_frame_del	1.000:1.000:1.000:1.000:0.994:0.398	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				16	0	0	7	5	41.6667
ZFHX4	0	genome.wustl.edu	37	8	77767554	77767554	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	77767554	77767554	T	-	DEL	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_del	c.8397	p.F2800fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				77	0	0	35	14	28.5714
TMEM55A	0	genome.wustl.edu	37	8	92020972	92020972	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	92020972	92020972	T	-	DEL	TMEM55A	ENST00000285419	human	ensembl	74_37	-1	known	frame_shift_del	c.538	p.I180fs	1.000	pfam_Transmembrane_protein_55A/B	pfam_Transmembrane_protein_55A/B	-	no_errors	TMEM55A	HGNC	ENSG00000155099				160	0	0	73	18	19.7802
POP1	0	genome.wustl.edu	37	8	99162863	99162863	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	8	99162863	99162863	A	-	DEL	POP1	ENST00000349693	human	ensembl	74_37	+1	known	frame_shift_del	c.2053	p.R686fs	1.000	pfam_POPLD	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				77	0	0	40	19	32.2034
GABBR2	0	genome.wustl.edu	37	9	101125082	101125082	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	101125082	101125082	C	-	DEL	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	frame_shift_del	c.1808	p.G603fs	1.000	pfam_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928				93	0	0	29	13	30.9524
GABBR2	0	genome.wustl.edu	37	9	101304280	101304281	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	101304280	101304281	-	T	INS	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	frame_shift_ins	c.505_504	p.Y168fs	1.000:1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928				107	0	0	28	19	40.4255
ZFP37	0	genome.wustl.edu	37	9	115806416	115806416	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	115806416	115806416	T	-	DEL	ZFP37	ENST00000553380	human	ensembl	74_37	-1	known	frame_shift_del	c.527	p.N176fs	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866				131	0	0	88	28	24.1379
RAB14	0	genome.wustl.edu	37	9	123952938	123952938	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	123952938	123952938	T	-	DEL	RAB14	ENST00000373840	human	ensembl	74_37	-1	known	frame_shift_del	c.178	p.I60fs	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB14	HGNC	ENSG00000119396				134	0	0	57	11	16.1765
RABGAP1	0	genome.wustl.edu	37	9	125861042	125861043	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	125861042	125861043	AA	-	DEL	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	frame_shift_del	c.2782_2783	p.N930fs	1.000:1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				141	0	0	46	10	17.8571
ADAMTSL1	0	genome.wustl.edu	37	9	18680349	18680350	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	18680349	18680350	-	G	INS	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	frame_shift_ins	c.1176_1177	p.I395fs	1.000:1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				91	0	0	38	14	26.9231
FOCAD	0	genome.wustl.edu	37	9	20912931	20912931	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	20912931	20912931	A	-	DEL	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	frame_shift_del	c.2785	p.S931fs	1.000	superfamily_ARM-type_fold	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				64	0	0	15	12	44.4444
SMARCA2	0	genome.wustl.edu	37	9	2181665	2181665	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	2181665	2181665	A	-	DEL	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	frame_shift_del	c.4348	p.I1452fs	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				87	0	0	37	12	24.4898
KIAA0020	0	genome.wustl.edu	37	9	2838446	2838446	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	2838446	2838446	T	-	DEL	KIAA0020	ENST00000397885	human	ensembl	74_37	-1	known	frame_shift_del	c.62	p.N21fs	0.000	NULL	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608				157	0	0	80	15	15.7895
APBA1	0	genome.wustl.edu	37	9	72067044	72067045	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	72067044	72067045	AC	-	DEL	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	frame_shift_del	c.1962_1961	p.C654fs	1.000:1.000	superfamily_PDZ	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				237	0	0	110	39	26.1745
VPS13A	0	genome.wustl.edu	37	9	79930196	79930197	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	79930196	79930197	-	A	INS	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	frame_shift_ins	c.4440_4441	p.D1482fs	0.992:0.997	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				162	0	0	96	18	15.7895
VPS13A	0	genome.wustl.edu	37	9	79931169	79931169	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	79931169	79931169	A	-	DEL	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	frame_shift_del	c.4710	p.N1572fs	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				140	0	0	78	31	28.4404
SPATA31D5P	0	genome.wustl.edu	37	9	84530528	84530528	+	RNA	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	9	84530528	84530528	C	-	DEL	SPATA31D5P	ENST00000527857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA31D5P	HGNC	ENSG00000240632				102	0	0	58	21	26.5823
TCEAL1	0	genome.wustl.edu	37	X	102884976	102884978	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	102884976	102884978	GGA	-	DEL	TCEAL1	ENST00000372624	human	ensembl	74_37	+1	known	in_frame_del	c.132_134	p.E47in_frame_del	0.000:0.886:0.956	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL1	HGNC	ENSG00000172465				35	0	0	19	11	36.6667
FAM199X	0	genome.wustl.edu	37	X	103411513	103411513	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	103411513	103411513	C	-	DEL	FAM199X	ENST00000493442	human	ensembl	74_37	+1	known	frame_shift_del	c.47	p.E18fs	1.000	NULL	NULL	-	no_errors	FAM199X	HGNC	ENSG00000123575				47	0	0	6	10	62.5
NRK	0	genome.wustl.edu	37	X	105150564	105150564	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	105150564	105150564	A	-	DEL	NRK	ENST00000428173	human	ensembl	74_37	+1	known	frame_shift_del	c.1003	p.R337fs	0.999	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				28	0	0	9	5	35.7143
FRMPD4	0	genome.wustl.edu	37	X	12704241	12704241	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	12704241	12704241	T	-	DEL	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	frame_shift_del	c.599	p.F201fs	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933				169	0	0	73	47	39.1667
FRMPD4	0	genome.wustl.edu	37	X	12736566	12736566	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	12736566	12736566	T	-	DEL	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	frame_shift_del	c.3621	p.S1209fs	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933				479	0	0	165	72	30.3797
MAGEC1	0	genome.wustl.edu	37	X	140994072	140994072	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	140994072	140994072	T	-	DEL	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	frame_shift_del	c.882	p.F295fs	0.007	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				718	0	0	255	94	26.9341
SRPK3	0	genome.wustl.edu	37	X	153048555	153048555	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	153048555	153048555	C	-	DEL	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	frame_shift_del	c.730	p.S246fs	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343				100	0	0	26	7	21.2121
ACE2	0	genome.wustl.edu	37	X	15584421	15584421	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	15584421	15584421	T	-	DEL	ACE2	ENST00000252519	human	ensembl	74_37	-1	known	frame_shift_del	c.2069	p.N690fs	0.048	NULL	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE2	HGNC	ENSG00000130234				411	0	0	228	42	15.5556
SCML2	0	genome.wustl.edu	37	X	18265925	18265926	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	18265925	18265926	GA	-	DEL	SCML2	ENST00000251900	human	ensembl	74_37	-1	known	frame_shift_del	c.1534_1533	p.P512fs	0.998:0.977	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098				180	0	0	72	35	32.7103
SAT1	0	genome.wustl.edu	37	X	23802147	23802147	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	23802147	23802147	A	-	DEL	SAT1	ENST00000379251	human	ensembl	74_37	+1	known	frame_shift_del	c.439	p.N150fs	0.001	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SAT1	HGNC	ENSG00000130066				12	0	0	8	4	33.3333
MID1IP1	0	genome.wustl.edu	37	X	38664436	38664437	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	38664436	38664437	-	T	INS	MID1IP1	ENST00000336949	human	ensembl	74_37	+1	known	frame_shift_ins	c.237_238	p.A81fs	0.846:0.946	pfam_Spot_14	pfam_Spot_14	-	no_errors	MID1IP1	HGNC	ENSG00000165175				91	0	0	38	21	35.5932
KDM6A	0	genome.wustl.edu	37	X	44928976	44928976	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	44928976	44928976	G	-	DEL	KDM6A	ENST00000382899	human	ensembl	74_37	+1	known	frame_shift_del	c.2097	p.A701fs	1.000	NULL	pfam_JmjC_dom,pfam_TPR_1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050				51	0	0	19	10	34.4828
DGKK	0	genome.wustl.edu	37	X	50111890	50111890	+	RNA	DEL	T	T	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	50111890	50111890	T	-	DEL	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.486	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466				26	0	0	13	7	35
ZXDB	0	genome.wustl.edu	37	X	57620229	57620230	+	In_Frame_Ins	INS	-	-	AGC			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	57620229	57620230	-	AGC	INS	ZXDB	ENST00000374888	human	ensembl	74_37	+1	known	in_frame_ins	c.1748_1749	p.586in_frame_insA	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDB	HGNC	ENSG00000198455				309	0	0	126	24	16
ZC3H12B	0	genome.wustl.edu	37	X	64722644	64722644	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	64722644	64722644	C	-	DEL	ZC3H12B	ENST00000338957	human	ensembl	74_37	+1	known	frame_shift_del	c.2066	p.Q691fs	0.016	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053				56	0	0	24	15	38.4615
STS	0	genome.wustl.edu	37	X	7268078	7268079	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	X	7268078	7268079	AG	-	DEL	STS	ENST00000217961	human	ensembl	74_37	+1	known	frame_shift_del	c.1528_1529	p.R512fs	0.000:0.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	STS	HGNC	ENSG00000101846				165	0	0	35	16	31.3725
